EnhancerDB
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  3. rs5878982[chr6:108885993]
Enhancers that have rs5878982[chr6:108885993]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 108877863 108893955 enh9307
Liver (HepG2) Cervix (HeLa-S3) Large Intestine Blood (T-cell) Astrocyte Bone (Osteoblast) Blood (GM12878) Placenta Colon (HCT116) Peripheral Blood (MM.1S) Blood (Karpas-422) Muscle (Myoblast) Pancreas Pancreas (Panc1) Thymus Heart
Transcript factors that have rs5878982[chr6:108885993]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 108885974 108885994 RREB1 JASPAR yes 104177815
chr6 108885976 108885996 RREB1 JASPAR yes 104177816
chr6 108885981 108886001 RREB1 JASPAR yes 104177817
chr6 108885982 108886003 IRF1 JASPAR yes 104177818
chr6 108885983 108885998 FOXP1 JASPAR yes 104177819
chr6 108885984 108885999 STAT2 JASPAR yes 104177820
chr6 108885986 108885998 IRF1 JASPAR yes 104177821
chr6 108885988 108885994 TCF4 TRANSFAC yes 104177822
chr6 108885988 108886003 FOXP1 JASPAR yes 104177823
chr6 108885989 108886000 FOXP2 JASPAR yes 104177824
chr6 108885989 108886001 FOXC2 JASPAR yes 104177825
chr6 108885989 108886004 STAT2 JASPAR yes 104177826
chr6 108885989 108886010 IRF1 JASPAR yes 104177827
chr6 108885990 108886005 FOXP1 JASPAR yes 104177828
Genes associated with rs5878982[chr6:108885993], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More