EnhancerDB
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  3. rs599129[chr1:234839705]
Enhancers that have rs599129[chr1:234839705]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 234827105 234875936 enh12795
Bone Marrow (K562) Liver Astrocyte Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs599129[chr1:234839705]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 234839275 234846237 ZNF274 GTRD no Blood (GM12878) 21395924
chr1 234839298 234840125 ZNF274 GTRD no Bone Marrow (K562) 21395925
chr1 234839309 234840133 ZNF274 GTRD no Cervix (HeLa-S3) 21395926
chr1 234839326 234839734 ZNF274 GTRD no Blood (GM12878) 21395927
chr1 234839335 234840268 ZNF274 GTRD no Cervix (HeLa-S3) 21395928
chr1 234839425 234840627 ZNF143 GTRD no Epithelial (MCF-7) 21395929
chr1 234839438 234840169 ZNF143 GTRD no Epithelial (MCF-7) 21395930
chr1 234839450 234840551 ZNF143 GTRD no Epithelial (MCF-7) 21395931
chr1 234839496 234839956 ZNF274 GTRD no Blood (GM12878) 21395932
chr1 234839560 234839982 ZNF274 GTRD no Bone Marrow (K562) 21395933
chr1 234839561 234840081 ZNF274 GTRD no Liver (HepG2) 21395934
chr1 234839583 234839973 ZNF274 GTRD no Liver (HepG2) 21395935
chr1 234839586 234840056 ZNF274 GTRD no Liver (HepG2) 21395936
chr1 234839591 234839926 ZNF143 GTRD no Epithelial (MCF-7) 21395937
chr1 234839597 234840054 ZNF274 GTRD no Bone Marrow (K562) 21395938
chr1 234839599 234840000 ZNF274 GTRD no Bone Marrow (K562) 21395939
chr1 234839615 234839965 ZNF274 GTRD no Cervix (HeLa-S3) 21395940
chr1 234839617 234839943 ZNF143 GTRD no Epithelial (MCF-7) 21395941
chr1 234839620 234840105 ZNF143 GTRD no Epithelial (MCF-7) 21395942
chr1 234839649 234840080 ZNF274 GTRD no Liver (HepG2) 21395943
chr1 234839654 234840025 ZNF274 GTRD no Liver (HepG2) 21395944
chr1 234839662 234839989 ZNF274 GTRD no Cervix (HeLa-S3) 21395945
chr1 234839683 234840050 ZNF143 GTRD no Epithelial (MCF-7) 21395946
chr1 234839699 234839971 SOX2 GTRD no Neural Stem Cells (H9) 21395947
chr1 234839700 234839713 JUN JASPAR yes 36304708
Genes associated with rs599129[chr1:234839705], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More