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- rs6503553[chr17:38892712]
Enhancers that have rs6503553[chr17:38892712]
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| Chrom. |
Start |
End |
Enhancer ID |
Tissues that enhancer appears |
More |
| chr17 |
38888365 |
38893519 |
enh62616 |
|
|
Transcript factors that have rs6503553[chr17:38892712]
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| Chrom. |
Start |
End |
TF name |
Source |
Predicted site? |
Tissue |
id |
More |
|
chr17
|
38892701
|
38892716
|
ZIC3
|
JASPAR
|
yes
|
|
54237521
|
|
|
chr17
|
38892702
|
38892712
|
SP1
|
JASPAR
|
yes
|
|
54237522
|
|
|
chr17
|
38892702
|
38892712
|
ZNF740
|
JASPAR
|
yes
|
|
54237523
|
|
|
chr17
|
38892703
|
38892713
|
ZNF740
|
JASPAR
|
yes
|
|
54237524
|
|
|
chr17
|
38892704
|
38892718
|
ZIC1
|
JASPAR
|
yes
|
|
54237525
|
|
|
chr17
|
38892704
|
38892719
|
ZIC3
|
JASPAR
|
yes
|
|
54237526
|
|
|
chr17
|
38892704
|
38892719
|
ZIC4
|
JASPAR
|
yes
|
|
54237527
|
|
Genes associated with rs6503553[chr17:38892712], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
| Chrom. |
Start |
End |
Strand |
Gene name |
Ensembl ID |
TSS of gene |
Distance between TSS and SNP |
Tissue |
q Value |
id |
More |
|
chr17
|
38171614
|
38174066
|
+
|
CSF3
|
ENSG00000108342.8
|
38171614
|
718646
|
Esophagus
|
0.309773
|
15755
|
|
|
chr17
|
39873994
|
39890896
|
-
|
HAP1
|
ENSG00000173805.11
|
39890896
|
981282
|
Esophagus
|
0.275034
|
15839
|
|
|
chr17
|
38296571
|
38328436
|
+
|
CASC3
|
ENSG00000108349.10
|
38296571
|
564276
|
Liver
|
0.158845
|
15760
|
|