-
Home
- SNP
- rs6540109[chr16:87950152]
Enhancers that have rs6540109[chr16:87950152]
Back to top
| Chrom. |
Start |
End |
Enhancer ID |
Tissues that enhancer appears |
More |
| chr16 |
87948864 |
87952962 |
enh89832 |
|
|
Transcript factors that have rs6540109[chr16:87950152]
Back to top
| Chrom. |
Start |
End |
TF name |
Source |
Predicted site? |
Tissue |
id |
More |
|
chr16
|
87949335
|
87952702
|
ZNF143
|
GTRD
|
no
|
Epithelial (MCF-7)
|
108221588
|
|
|
chr16
|
87949524
|
87953760
|
ZBTB33
|
GTRD
|
no
|
Lung (A549)
|
108221589
|
|
|
chr16
|
87949779
|
87952556
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
108221590
|
|
|
chr16
|
87949983
|
87952617
|
ZNF143
|
GTRD
|
no
|
Epithelial (MCF-7)
|
108221591
|
|
|
chr16
|
87950034
|
87952900
|
ZNF143
|
GTRD
|
no
|
Epithelial (MCF-7)
|
108221592
|
|
|
chr16
|
87950037
|
87953027
|
ZBTB33
|
GTRD
|
no
|
Lung (A549)
|
108221593
|
|
|
chr16
|
87950046
|
87952839
|
ZBTB33
|
GTRD
|
no
|
Lung (A549)
|
108221594
|
|
|
chr16
|
87950058
|
87954400
|
ZNF274
|
GTRD
|
no
|
Blood (GM12878)
|
108221595
|
|
|
chr16
|
87950063
|
87953673
|
ZNF274
|
GTRD
|
no
|
Liver (HepG2)
|
108221596
|
|
|
chr16
|
87950064
|
87952622
|
ZBTB33
|
GTRD
|
no
|
Lung (A549)
|
108221597
|
|
|
chr16
|
87950064
|
87952811
|
ZNF143
|
GTRD
|
no
|
Epithelial (MCF-7)
|
108221598
|
|
|
chr16
|
87950064
|
87952867
|
ZNF274
|
GTRD
|
no
|
Blood (GM12878)
|
108221599
|
|
|
chr16
|
87950067
|
87952962
|
ZNF274
|
GTRD
|
no
|
Bone Marrow (K562)
|
108221600
|
|
|
chr16
|
87950074
|
87952917
|
ZNF274
|
GTRD
|
no
|
Bone Marrow (K562)
|
108221601
|
|
|
chr16
|
87950076
|
87952796
|
ZBTB33
|
GTRD
|
no
|
Lung (A549)
|
108221602
|
|
|
chr16
|
87950077
|
87954070
|
ZNF274
|
GTRD
|
no
|
Blood (GM12878)
|
108221603
|
|
|
chr16
|
87950079
|
87957473
|
ZNF274
|
GTRD
|
no
|
Blood (GM12878)
|
108221604
|
|
|
chr16
|
87950096
|
87954760
|
ZNF143
|
GTRD
|
no
|
Epithelial (MCF-7)
|
108221605
|
|
|
chr16
|
87950109
|
87952548
|
ZBTB33
|
GTRD
|
no
|
Lung (A549)
|
108221606
|
|
|
chr16
|
87950121
|
87952810
|
ZNF274
|
GTRD
|
no
|
Liver (HepG2)
|
108221607
|
|
|
chr16
|
87950126
|
87953116
|
ZNF274
|
GTRD
|
no
|
Liver (HepG2)
|
108221608
|
|
|
chr16
|
87950128
|
87952562
|
ZNF274
|
GTRD
|
no
|
Bone Marrow (K562)
|
108221609
|
|
|
chr16
|
87950133
|
87952613
|
ZNF143
|
GTRD
|
no
|
Epithelial (MCF-7)
|
108221610
|
|
|
chr16
|
87950140
|
87952923
|
ZNF274
|
GTRD
|
no
|
Liver (HepG2)
|
108221611
|
|
|
chr16
|
87950143
|
87950153
|
FIGLA
|
JASPAR
|
yes
|
|
12251840
|
|
|
chr16
|
87950145
|
87950163
|
IRF2
|
JASPAR
|
yes
|
|
12251842
|
|
|
chr16
|
87950146
|
87950167
|
IRF1
|
JASPAR
|
yes
|
|
12251843
|
|
|
chr16
|
87950148
|
87950163
|
PRDM1
|
JASPAR
|
yes
|
|
12251844
|
|
|
chr16
|
87950148
|
87950163
|
STAT2
|
JASPAR
|
yes
|
|
12251845
|
|
|
chr16
|
87950148
|
87953308
|
ZNF274
|
GTRD
|
no
|
Blood (GM12878)
|
108221612
|
|
|
chr16
|
87950149
|
87950163
|
STAT1
|
JASPAR
|
yes
|
|
12251846
|
|
|
chr16
|
87950150
|
87950162
|
IRF1
|
JASPAR
|
yes
|
|
12251847
|
|
|
chr16
|
87950150
|
87950164
|
IRF7
|
JASPAR
|
yes
|
|
12251848
|
|
|
chr16
|
87950150
|
87950164
|
IRF8
|
JASPAR
|
yes
|
|
12251849
|
|
|
chr16
|
87950150
|
87950165
|
IRF9
|
JASPAR
|
yes
|
|
12251850
|
|
Genes associated with rs6540109[chr16:87950152], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
| Chrom. |
Start |
End |
Strand |
Gene name |
Ensembl ID |
TSS of gene |
Distance between TSS and SNP |
Tissue |
q Value |
id |
More |
|
chr16
|
87635441
|
87731762
|
+
|
JPH3
|
ENSG00000154118.8
|
87635441
|
218390
|
Thyroid
|
0.121868
|
15146
|
|