EnhancerDB
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  3. rs66971538[chr1:204683993]
Enhancers that have rs66971538[chr1:204683993]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 204671389 204688135 enh890
Bone Marrow (K562) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Blood (OCI-LY7) Placenta Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Thymus Epithelial (MCF-7)
Transcript factors that have rs66971538[chr1:204683993]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 204682746 204685161 ZNF274 GTRD no Bone Marrow (K562) 21371055
chr1 204682746 204685161 ZNF274 GTRD no Bone Marrow (K562) 107860696
chr1 204682817 204685436 ZNF274 GTRD no Bone Marrow (K562) 21371056
chr1 204682817 204685436 ZNF274 GTRD no Bone Marrow (K562) 107860697
chr1 204683463 204686837 ZNF143 GTRD no Epithelial (MCF-7) 21371069
chr1 204683463 204686837 ZNF143 GTRD no Epithelial (MCF-7) 107860698
chr1 204683481 204684005 ZNF274 GTRD no Bone Marrow (K562) 21371070
chr1 204683524 204686157 ZNF143 GTRD no Epithelial (MCF-7) 21371071
chr1 204683524 204686157 ZNF143 GTRD no Epithelial (MCF-7) 107860699
chr1 204683561 204686179 ZNF143 GTRD no Epithelial (MCF-7) 21371072
chr1 204683561 204686179 ZNF143 GTRD no Epithelial (MCF-7) 107860700
chr1 204683562 204686281 ZNF143 GTRD no Epithelial (MCF-7) 21371073
chr1 204683562 204686281 ZNF143 GTRD no Epithelial (MCF-7) 107860701
chr1 204683569 204686929 ZNF143 GTRD no Epithelial (MCF-7) 21371074
chr1 204683569 204686929 ZNF143 GTRD no Epithelial (MCF-7) 107860702
chr1 204683625 204686107 TCF7L2 GTRD no Colon (HCT116) 107860703
chr1 204683750 204686325 TCF7L2 GTRD no Colon (HCT116) 107860704
chr1 204683794 204686709 ZNF143 GTRD no Epithelial (MCF-7) 21371075
chr1 204683794 204686709 ZNF143 GTRD no Epithelial (MCF-7) 107860705
chr1 204683820 204684244 CTCF UCSC Txn Factor no Conserved 107860706
chr1 204683858 204686201 TCF7L2 GTRD no Colon (HCT116) 107860707
chr1 204683867 204684227 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107860708
chr1 204683902 204684492 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107860709
chr1 204683905 204684229 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107860710
chr1 204683913 204684203 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107860711
chr1 204683939 204684217 RAD21 UCSC Txn Factor no Conserved 107860712
chr1 204683953 204684197 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21371076
chr1 204683953 204684197 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107860713
chr1 204683955 204684199 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107860714
chr1 204683956 204684226 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107860715
chr1 204683962 204684232 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107860716
chr1 204683966 204684196 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107860717
chr1 204683984 204684000 GLIS1 JASPAR yes 34723071
chr1 204683985 204684135 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21371077
chr1 204683985 204684135 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 107860718
Genes associated with rs66971538[chr1:204683993], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More