EnhancerDB
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  3. rs71925390[chr12:54188775]
Enhancers that have rs71925390[chr12:54188775]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 54186005 54202829 enh80200
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Epithelial (MCF-7)
Transcript factors that have rs71925390[chr12:54188775]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 54188051 54190510 ZNF143 GTRD no Epithelial (MCF-7) 21549657
chr12 54188081 54189966 ZNF143 GTRD no Epithelial (MCF-7) 21549658
chr12 54188250 54190215 ZNF274 GTRD no Cervix (HeLa-S3) 21549659
chr12 54188294 54190356 ZNF143 GTRD no Epithelial (MCF-7) 21549660
chr12 54188297 54189730 ZNF274 GTRD no Liver (HepG2) 21549661
chr12 54188308 54189258 ZNF143 GTRD no Epithelial (MCF-7) 21549662
chr12 54188308 54190438 ZNF274 GTRD no Cervix (HeLa-S3) 21549663
chr12 54188321 54189307 ZNF274 GTRD no Liver (HepG2) 21549664
chr12 54188338 54189576 ZNF143 GTRD no Epithelial (MCF-7) 21549665
chr12 54188338 54189974 ZNF143 GTRD no Epithelial (MCF-7) 21549666
chr12 54188348 54189693 ZNF143 GTRD no Epithelial (MCF-7) 21549667
chr12 54188436 54189817 ZNF274 GTRD no Liver (HepG2) 21549668
chr12 54188439 54189677 ZNF274 GTRD no Cervix (HeLa-S3) 21549669
chr12 54188445 54189755 ZNF274 GTRD no Liver (HepG2) 21549670
chr12 54188452 54189464 ZNF143 GTRD no Epithelial (MCF-7) 21549671
chr12 54188461 54189130 ZNF143 GTRD no Epithelial (MCF-7) 21549672
chr12 54188465 54189618 ZNF274 GTRD no Liver (HepG2) 21549673
chr12 54188465 54190205 ZNF274 GTRD no Cervix (HeLa-S3) 21549674
chr12 54188469 54189248 ZNF274 GTRD no Cervix (HeLa-S3) 21549675
chr12 54188474 54189021 ZNF143 GTRD no Epithelial (MCF-7) 21549676
chr12 54188478 54189154 ZNF143 GTRD no Epithelial (MCF-7) 21549677
chr12 54188499 54189568 ZNF274 GTRD no Liver (HepG2) 21549678
chr12 54188501 54189011 ZNF143 GTRD no Epithelial (MCF-7) 21549679
chr12 54188533 54189286 ZNF143 GTRD no Epithelial (MCF-7) 21549680
chr12 54188540 54188980 ZNF274 GTRD no Cervix (HeLa-S3) 21549681
chr12 54188540 54189772 ZNF274 GTRD no Liver (HepG2) 21549682
chr12 54188545 54188939 ZNF274 GTRD no Liver (HepG2) 21549683
chr12 54188545 54189197 ZNF274 GTRD no Liver (HepG2) 21549684
chr12 54188561 54189108 ZNF274 GTRD no Liver (HepG2) 21549685
chr12 54188563 54189530 ZNF274 GTRD no Cervix (HeLa-S3) 21549686
chr12 54188564 54189449 ZNF274 GTRD no Liver (HepG2) 21549687
chr12 54188569 54189573 ZNF274 GTRD no Cervix (HeLa-S3) 21549688
chr12 54188574 54189748 ZNF143 GTRD no Epithelial (MCF-7) 21549689
chr12 54188586 54189595 ZNF274 GTRD no Liver (HepG2) 21549690
chr12 54188596 54189554 ZNF143 GTRD no Epithelial (MCF-7) 21549691
chr12 54188604 54189552 ZNF274 GTRD no Cervix (HeLa-S3) 21549692
chr12 54188637 54189153 ZNF274 GTRD no Liver (HepG2) 21549693
chr12 54188649 54189537 ZNF274 GTRD no Liver (HepG2) 21549694
chr12 54188656 54189377 ZNF274 GTRD no Liver (HepG2) 21549695
chr12 54188656 54189438 ZNF274 GTRD no Liver (HepG2) 21549696
chr12 54188665 54189626 ZNF274 GTRD no Liver (HepG2) 21549697
chr12 54188666 54189169 ZNF143 GTRD no Epithelial (MCF-7) 21549698
chr12 54188667 54189438 ZNF143 GTRD no Epithelial (MCF-7) 21549699
chr12 54188675 54189366 ZNF274 GTRD no Liver (HepG2) 21549700
chr12 54188686 54189249 ZNF274 GTRD no Liver (HepG2) 21549701
chr12 54188690 54189368 ZNF143 GTRD no Epithelial (MCF-7) 21549702
chr12 54188693 54189110 ZNF274 GTRD no Liver (HepG2) 21549703
chr12 54188703 54189464 ZNF274 GTRD no Liver (HepG2) 21549704
chr12 54188709 54189187 ZNF143 GTRD no Epithelial (MCF-7) 21549705
chr12 54188711 54189155 ZNF274 GTRD no Liver (HepG2) 21549706
chr12 54188760 54188775 FOXP1 JASPAR yes 121008554
chr12 54188768 54189413 ZNF274 GTRD no Liver (HepG2) 21549707
Genes associated with rs71925390[chr12:54188775], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More