EnhancerDB
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Enhancers that have rs77645990[chr12:54220517]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 54212382 54224675 enh43743
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-MC) Peripheral Blood (MM.1S) Lung (PC-9) Pancreas (Panc1) Muscle (Myotube) Epithelial (MCF-7)
Transcript factors that have rs77645990[chr12:54220517]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 54219764 54220895 ZNF143 GTRD no Epithelial (MCF-7) 21550025
chr12 54219766 54221126 ZNF274 GTRD no Cervix (HeLa-S3) 21550026
chr12 54219772 54220952 ZNF143 GTRD no Epithelial (MCF-7) 21550027
chr12 54219819 54221318 ZNF274 GTRD no Cervix (HeLa-S3) 21550028
chr12 54219924 54220729 ZNF143 GTRD no Epithelial (MCF-7) 21550029
chr12 54219933 54220750 ZNF143 GTRD no Epithelial (MCF-7) 21550030
chr12 54219940 54220998 ZNF143 GTRD no Epithelial (MCF-7) 21550031
chr12 54219941 54220726 ZNF143 GTRD no Epithelial (MCF-7) 21550032
chr12 54219948 54220778 ZNF143 GTRD no Epithelial (MCF-7) 21550033
chr12 54219948 54221018 ZNF143 GTRD no Epithelial (MCF-7) 21550034
chr12 54219949 54220544 ZNF274 GTRD no Cervix (HeLa-S3) 21550035
chr12 54220025 54221678 ZNF274 GTRD no Cervix (HeLa-S3) 21550036
chr12 54220063 54220564 ZNF274 GTRD no Liver (HepG2) 21550039
chr12 54220079 54220658 ZNF274 GTRD no Liver (HepG2) 21550040
chr12 54220107 54220547 ZNF143 GTRD no Epithelial (MCF-7) 21550044
chr12 54220108 54220681 ZNF274 GTRD no Liver (HepG2) 21550045
chr12 54220111 54220738 ZNF143 GTRD no Epithelial (MCF-7) 21550046
chr12 54220112 54220548 ZNF274 GTRD no Cervix (HeLa-S3) 21550047
chr12 54220115 54220862 ZNF274 GTRD no Liver (HepG2) 21550048
chr12 54220116 54220626 ZNF143 GTRD no Epithelial (MCF-7) 21550049
chr12 54220117 54220523 ZNF274 GTRD no Cervix (HeLa-S3) 21550050
chr12 54220121 54220569 ZNF143 GTRD no Epithelial (MCF-7) 21550051
chr12 54220125 54220565 ZNF274 GTRD no Liver (HepG2) 21550053
chr12 54220509 54220520 STAT1 JASPAR yes 121011744
chr12 54220513 54220518 ETS2 TRANSFAC yes 121011745
Genes associated with rs77645990[chr12:54220517], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More