EnhancerDB
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  3. rs78889008[chr1:236098720]
Enhancers that have rs78889008[chr1:236098720]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 236091945 236120510 enh12806
Skin (Keratinocyte) Prostate (PC-3) Brain (SK-N-MC) Prostate (RWPE1) Blood (T-cell) Esophagus Astrocyte Lung (PC-9) Bone (Osteoblast) Blood (GM12878) Placenta Muscle (Myoblast) Breast Pancreas (Panc1) Muscle (Myotube) Uterus Thymus Stomach
Transcript factors that have rs78889008[chr1:236098720]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 236098703 236098723 RREB1 JASPAR yes 36389980
chr1 236098704 236098725 IRF1 JASPAR yes 36389981
chr1 236098708 236098720 IRF1 JASPAR yes 36389982
chr1 236098708 236098728 RREB1 JASPAR yes 36389983
chr1 236098709 236098730 IRF1 JASPAR yes 36389984
chr1 236098710 236098725 FOXP1 JASPAR yes 36389986
chr1 236098711 236098726 STAT2 JASPAR yes 36389987
chr1 236098713 236098725 IRF1 JASPAR yes 36389988
chr1 236098715 236098721 TCF4 TRANSFAC yes 36389989
chr1 236098715 236098730 FOXP1 JASPAR yes 36389990
chr1 236098716 236098727 FOXP2 JASPAR yes 36389991
chr1 236098716 236098728 FOXC2 JASPAR yes 36389992
Genes associated with rs78889008[chr1:236098720], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 235824341 236046940 - LYST ENSG00000143669.9 236046940 51780 Heart 0.12485 1972