EnhancerDB
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Enhancers that regulate LYST[ENSG00000143669.9]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 235982808 235991655 enh27641 236046940 55285
Astrocyte Prostate (PC-3) Bone (Osteoblast) Liver (HepG2)
chr1 235994307 235994722 vista5713 236046940 52218
VISTA
chr1 235999425 236008995 enh1001 236046940 37945
Brain (SK-N-MC) Liver Blood (Karpas-422) Uterus Blood (T-cell) Stomach
chr1 236017185 236029595 enh57530 236046940 17345
Cervix (HeLa-S3) Lung (A549) Peripheral Blood (MM.1S) Uterus Blood (T-cell)
chr1 236021417 236021780 vista5714 236046940 25160
VISTA
chr1 236022018 236022676 vista5715 236046940 24264
VISTA
chr1 236022682 236022818 vista5716 236046940 24122
VISTA
chr1 236025805 236026204 vista5717 236046940 20736
VISTA
chr1 236026265 236026446 vista5718 236046940 20494
VISTA
chr1 236026992 236027471 vista5719 236046940 19469
VISTA
chr1 236027883 236028291 vista5720 236046940 18649
VISTA
chr1 236030835 236031025 vista5721 236046940 15915
VISTA
chr1 236031049 236031919 vista5722 236046940 15021
VISTA
chr1 236034405 236042035 enh107445 236046940 4905
Blood (T-cell) Stomach
chr1 236039869 236040195 vista5723 236046940 6745
VISTA
chr1 236041479 236041632 vista5724 236046940 5308
VISTA
chr1 236054165 236059415 enh108414 236046940 7225
Stomach Lung (PC-9)
chr1 236062005 236089295 enh12805 236046940 15065
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673)
chr1 236080566 236081247 vista5725 236046940 33626
VISTA
chr1 236081357 236081630 vista5726 236046940 34417
VISTA
chr1 236082498 236082788 vista5727 236046940 35558
VISTA
chr1 236083263 236083651 vista5728 236046940 36323
VISTA
chr1 236091945 236120510 enh12806 236046940 45005
Skin (Keratinocyte) Prostate (PC-3) Brain (SK-N-MC) Prostate (RWPE1) Blood (T-cell) Esophagus Astrocyte Lung (PC-9) Bone (Osteoblast) Blood (GM12878) Placenta Muscle (Myoblast) Breast Pancreas (Panc1) Muscle (Myotube) Uterus Thymus Stomach
chr1 236101998 236102489 vista5729 236046940 55058
VISTA
chr1 236103652 236103741 vista5730 236046940 56712
VISTA
chr1 236105368 236105579 vista5731 236046940 58428
VISTA
chr1 236109486 236110063 vista5732 236046940 62546
VISTA
chr1 236115118 236115321 vista5733 236046940 68178
VISTA
chr1 236116403 236116669 vista5734 236046940 69463
VISTA
chr1 236118323 236118637 vista5735 236046940 71383
VISTA
chr1 236131705 236138955 enh12807 236046940 84765
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Blood (T-cell) Astrocyte Bone (Osteoblast) Placenta Muscle (Myoblast) Pancreas Pancreas (Panc1) Uterus Thymus
chr1 236135691 236135959 vista5736 236046940 88751
VISTA
Transcript facotrs that regulate LYST[ENSG00000143669.9]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 236041942 236041947 GATA2 JASPAR yes 236046940 4993 36384047
chr1 236041945 236041948 MYB TRANSFAC yes 236046940 4992 36384048
chr1 236041946 236041964 TP63 JASPAR yes 236046940 4976 36384049
chr1 236041959 236041970 FLI1 JASPAR yes 236046940 4970 36384050
chr1 236041961 236041975 E2F7 JASPAR yes 236046940 4965 36384051
chr1 236041962 236041974 E2F8 JASPAR yes 236046940 4966 36384052
chr1 236041967 236041973 NFIC JASPAR yes 236046940 4967 36384053
chr1 236041980 236041998 SRF JASPAR yes 236046940 4942 36384054
chr1 236041984 236041988 YY1 TRANSFAC yes 236046940 4952 36384055
chr1 236041994 236042006 NHLH1 JASPAR yes 236046940 4934 36384056
chr1 236041995 236042005 NHLH1 JASPAR yes 236046940 4935 36384057
chr1 236041997 236042012 MAFK JASPAR yes 236046940 4928 36384058
chr1 236042009 236042019 ALX3 JASPAR yes 236046940 4921 36384059
chr1 236042009 236042019 EMX1 JASPAR yes 236046940 4921 36384060
chr1 236042009 236042019 EMX2 JASPAR yes 236046940 4921 36384061
chr1 236042009 236042019 ESX1 JASPAR yes 236046940 4921 36384062
chr1 236042009 236042019 EVX1 JASPAR yes 236046940 4921 36384063
chr1 236042009 236042019 EVX2 JASPAR yes 236046940 4921 36384064
chr1 236042009 236042019 GBX1 JASPAR yes 236046940 4921 36384065
chr1 236042009 236042019 GSX1 JASPAR yes 236046940 4921 36384066
chr1 236042009 236042019 HOXA2 JASPAR yes 236046940 4921 36384067
chr1 236042009 236042019 HOXB2 JASPAR yes 236046940 4921 36384068
chr1 236042009 236042019 LHX2 JASPAR yes 236046940 4921 36384069
chr1 236042009 236042019 MEOX1 JASPAR yes 236046940 4921 36384070
chr1 236042009 236042019 NOTO JASPAR yes 236046940 4921 36384071
chr1 236042009 236042023 RORA JASPAR yes 236046940 4917 36384072
chr1 236042010 236042018 LBX1 JASPAR yes 236046940 4922 36384073
chr1 236042010 236042018 PDX1 JASPAR yes 236046940 4922 36384074
chr1 236042010 236042018 VAX1 JASPAR yes 236046940 4922 36384075
chr1 236042010 236042018 VAX2 JASPAR yes 236046940 4922 36384076
chr1 236042010 236042018 VSX1 JASPAR yes 236046940 4922 36384077
chr1 236042010 236042018 VSX2 JASPAR yes 236046940 4922 36384078
chr1 236042010 236042020 POU6F2 JASPAR yes 236046940 4920 36384079
chr1 236042011 236042022 PHOX2A JASPAR yes 236046940 4918 36384080
SNPs associated with LYST[ENSG00000143669.9], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 236041446 rs10803120 C T 0 Esophagus 1.001e-05 1052765
chr1 236067846 rs10927015 A C 20906 Esophagus 0.0298049 1052994
chr1 236039581 rs6674698 T C 0 Esophagus 0.319455 1052738
chr1 235255977 rs115759825 G A 568364 Heart 0.021138 1049718
chr1 236098720 rs78889008 G T 51780 Heart 0.12485 1053426
chr1 236617758 rs67500985 T C 570818 Pancreas 0.0625584 1057024
chr1 236097409 rs397754665 A AT 50469 Spleen 0.0295952 1053396
chr1 236001779 rs6668242 T C 0 Thyroid 0.00211642 1052448
chr1 236073016 rs12027894 G A 26076 Stomach 0.000205566 1053056
Details of LYST[ENSG00000143669.9]
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Genomic Location chr1:235824341-236046940[-]
TSS 236046940
Gene Name LYST
Ensembl ID ENSG00000143669.9
ENTREZID 1130
Uniprot
Q99698
Protein Name
LYST protein
Lysosomal-trafficking regulator
Expression levels of LYST[ENSG00000143669.9]
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