Information for 12-AAGAGATCAACA (Motif 12)

C G T A C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T A C G T A C T G C G T A A C G T A G T C A C G T A G T C A C G T A C G T
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets32.0 +/- 0.0bp
Average Position of motif in Background19.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ONECUT1/MA0679.2/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AAGAGATCAACA----
AAAAAATCAATAAATA
C G T A C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A C G T A A G T C C G T A A C G T A C G T A C G T A C G T
C G T A C G T A C G T A G C T A C T G A C T G A G C A T G T A C C T G A C G T A G A C T C T G A G C T A G C T A G C A T G C T A

RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AAGAGATCAACA
CAAAGKTCAA--
C G T A C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A C G T A A G T C C G T A
G A T C G T C A T C G A T C G A C T A G C A T G A G C T G T A C T C G A T C G A A C G T A C G T

PB0126.1_Gata5_2/Jaspar

Match Rank:3
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----AAGAGATCAACA-
GACAGAGATATCAGTGT
A C G T A C G T A C G T A C G T C G T A C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A C G T A A G T C C G T A A C G T
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T

Foxj2/MA0614.1/Jaspar

Match Rank:4
Score:0.61
Offset:5
Orientation:forward strand
Alignment:AAGAGATCAACA-
-----GTAAACAA
C G T A C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A C G T A A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C T A G G C A T G T C A C G T A C G T A A G T C C G T A C G T A

PH0017.1_Cux1_2/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AAGAGATCAACA---
TAGTGATCATCATTA
C G T A C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A C G T A A G T C C G T A A C G T A C G T A C G T
G A C T G C T A C A T G A G C T C A T G G C T A C G A T G A T C C G T A C A G T G A T C T C G A A G C T A C G T G C T A

LEF1/MA0768.1/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AAGAGATCAACA----
-AAAGATCAAAGGGTT
C G T A C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T

MF0005.1_Forkhead_class/Jaspar

Match Rank:7
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:AAGAGATCAACA
---AAATAAACA
C G T A C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A C G T A A G T C C G T A
A C G T A C G T A C G T T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:8
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:AAGAGATCAACA-
---DGATCRATAN
C G T A C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A C G T A A G T C C G T A A C G T
A C G T A C G T A C G T C T A G C T A G C T G A A C G T A G T C C T A G C G T A A C G T G T C A G A T C

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AAGAGATCAACA
-AGRGGTCA---
C G T A C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A C G T A A G T C C G T A
A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T

ONECUT3/MA0757.1/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AAGAGATCAACA--
AAAAAATCAATAAT
C G T A C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A C G T A A G T C C G T A A C G T A C G T
T C G A C T G A C G T A G C T A C T G A C T G A G A C T G T A C T C G A C G T A C G A T C G T A G C T A G C A T