| p-value: | 1e-4 |
| log p-value: | -1.072e+01 |
| Information Content per bp: | 1.530 |
| Number of Target Sequences with motif | 1.0 |
| Percentage of Target Sequences with motif | 50.00% |
| Number of Background Sequences with motif | 1.8 |
| Percentage of Background Sequences with motif | 0.00% |
| Average Position of motif in Targets | 27.0 +/- 0.0bp |
| Average Position of motif in Background | 91.0 +/- 0.0bp |
| Strand Bias (log2 ratio + to - strand density) | 10.0 |
| Multiplicity (# of sites on avg that occur together) | 1.00 |
| Motif File: | file (matrix) reverse opposite |
| SVG Files for Logos: | forward logo reverse opposite |
NR1H4/MA1110.1/Jaspar
| Match Rank: | 1 |
| Score: | 0.72 |
| Offset: | 3 |
| Orientation: | forward strand |
| Alignment: | ATGATAATGACC-- ---TCAATGACCTA |
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Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer
| Match Rank: | 2 |
| Score: | 0.69 |
| Offset: | -1 |
| Orientation: | forward strand |
| Alignment: | -ATGATAATGACC WATGCAAATGAG- |
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POU6F1(var.2)/MA1549.1/Jaspar
| Match Rank: | 3 |
| Score: | 0.69 |
| Offset: | 3 |
| Orientation: | forward strand |
| Alignment: | ATGATAATGACC- ---ATAATGAGGT |
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HOXA6/MA1497.1/Jaspar
| Match Rank: | 4 |
| Score: | 0.68 |
| Offset: | 2 |
| Orientation: | reverse strand |
| Alignment: | ATGATAATGACC --NNTAATTACN |
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HOXA4/MA1496.1/Jaspar
| Match Rank: | 5 |
| Score: | 0.68 |
| Offset: | 3 |
| Orientation: | reverse strand |
| Alignment: | ATGATAATGACC ---NTAATGAC- |
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|
|
NKX6-3/MA1530.1/Jaspar
| Match Rank: | 6 |
| Score: | 0.67 |
| Offset: | 2 |
| Orientation: | reverse strand |
| Alignment: | ATGATAATGACC --TTTAATGAN- |
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|
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Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer
| Match Rank: | 7 |
| Score: | 0.67 |
| Offset: | -1 |
| Orientation: | forward strand |
| Alignment: | -ATGATAATGACC TATGCWAATBAV- |
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EVX1/MA0887.1/Jaspar
| Match Rank: | 8 |
| Score: | 0.67 |
| Offset: | 2 |
| Orientation: | reverse strand |
| Alignment: | ATGATAATGACC --GNTAATTANN |
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|
|
PH0073.1_Hoxc9/Jaspar
| Match Rank: | 9 |
| Score: | 0.67 |
| Offset: | -1 |
| Orientation: | reverse strand |
| Alignment: | -ATGATAATGACC--- NNAATTAATGACCNNN |
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PH0151.1_Pou6f1_1/Jaspar
| Match Rank: | 10 |
| Score: | 0.67 |
| Offset: | -1 |
| Orientation: | forward strand |
| Alignment: | -ATGATAATGACC---- GACGATAATGAGCTTGC |
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