Information for 10-CTCTAGCCAT (Motif 28)

A G T C A C G T A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G A C T G A G T C A C G T C G T A A C T G C G T A A C T G
p-value:1e-3
log p-value:-7.287e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif19.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets72.0 +/- 0.0bp
Average Position of motif in Background126.4 +/- 70.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD3/MA0795.1/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CTCTAGCCAT
CGTCTAGACA-
A C G T A G T C A C G T A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C G T
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T

Smad4/MA1153.1/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CTCTAGCCAT
-TCTAGACA-
A G T C A C G T A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T

SMAD5/MA1557.1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTCTAGCCAT
TGTCTAGACA-
A C G T A G T C A C G T A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C G T
G A C T T C A G C A G T T G A C A C G T T G C A T A C G G T C A G A T C G C T A A C G T

ZBTB6/MA1581.1/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CTCTAGCCAT
GTCCTTGAGCCCG
A C G T A C G T A C G T A G T C A C G T A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C G T
C A T G A G C T T A G C G T A C A G C T C A G T T A C G G T C A T C A G G T A C G A T C T G A C T A C G

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CTCTAGCCAT----
----GGCCATTAAC
A G T C A C G T A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

POL004.1_CCAAT-box/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CTCTAGCCAT---
-ACTAGCCAATCA
A G T C A C G T A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CTCTAGCCAT
--BCAGACWA
A G T C A C G T A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:8
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CTCTAGCCAT
AGGTCTCTAACC--
A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C G T
C T G A T C A G A C T G C A G T A G T C G A C T A G T C A C G T C G T A G C T A A T G C G A T C A C G T A C G T

Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CTCTAGCCAT---
-TYTGACCASWRG
A G T C A C G T A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T G A C T A G T C C G A T A C T G C T G A T G A C G T A C C G T A A T C G G C A T C T G A C T A G

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CTCTAGCCAT
ATCACCCCAT
A G T C A C G T A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C G T
T C G A G C A T A T G C C T G A A T G C T A G C A G T C G T A C T C G A A G C T