Information for 5-CAATGGATAC (Motif 18)

A G T C C G T A C G T A A C G T A C T G A C T G C G T A A C G T C G T A A G T C
Reverse Opposite:
A C T G A C G T C G T A A C G T A G T C A G T C C G T A A C G T A C G T A C T G
p-value:1e-3
log p-value:-8.670e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif16.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets35.0 +/- 0.0bp
Average Position of motif in Background94.4 +/- 83.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX2/MA0143.4/Jaspar

Match Rank:1
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CAATGGATAC
AAACAATGGAA--
A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C T G A C T G C G T A A C G T C G T A A G T C
C G T A C G T A G C T A G A T C G C T A T C G A C G A T C T A G C T A G C G T A G C T A A C G T A C G T

DMRTC2/MA1479.1/Jaspar

Match Rank:2
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CAATGGATAC---
-AATTGATACATT
A G T C C G T A C G T A A C G T A C T G A C T G C G T A A C G T C G T A A G T C A C G T A C G T A C G T
A C G T G C T A C G T A G C A T A C G T A T C G G T C A G C A T G T C A A T G C C G T A G C A T C A G T

SOX13/MA1120.1/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CAATGGATAC
AAACAATGGCA--
A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C T G A C T G C G T A A C G T C G T A A G T C
C T G A T C G A C T G A A G T C G C T A C T G A G C A T C T A G T C A G T G A C G C T A A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CAATGGATAC
VRAACAATGG----
A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C T G A C T G C G T A A C G T C G T A A G T C
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CAATGGATAC
GAACAATGG----
A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C T G A C T G C G T A A C G T C G T A A G T C
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:6
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CAATGGATAC---
--NTTGATACATT
A G T C C G T A C G T A A C G T A C T G A C T G C G T A A C G T C G T A A G T C A C G T A C G T A C G T
A C G T A C G T C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T

Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer

Match Rank:7
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------CAATGGATAC
VVRRAACAATGG----
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C T G A C T G C G T A A C G T C G T A A G T C
T G A C T A G C T C A G T C G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T A C G A C G T A C G T A C G T A C G T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:8
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CAATGGATAC-
-AATGGAAAAT
A G T C C G T A C G T A A C G T A C T G A C T G C G T A A C G T C G T A A G T C A C G T
A C G T T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CAATGGATAC-----
CTACTTGGATACGGAAT
A C G T A C G T A G T C C G T A C G T A A C G T A C T G A C T G C G T A A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A T G C A C G T T C G A A T G C C A G T G A C T T C A G A C T G C G T A A C G T C G T A G A T C T A C G T A C G C G T A C G T A G C A T

DMRTA2/MA1478.1/Jaspar

Match Rank:10
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CAATGGATAC---
-AATTGTTACATT
A G T C C G T A C G T A A C G T A C T G A C T G C G T A A C G T C G T A A G T C A C G T A C G T A C G T
A C G T G C T A C G T A G C A T A G C T A C T G G C A T G C A T C T G A A G T C C G T A C G A T A C G T