Information for 6-CGTGACCTCC (Motif 28)

A G T C A C T G A C G T A C T G C G T A A G T C A G T C A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A A C T G A C T G A C G T A G T C C G T A A G T C A C T G
p-value:1e-3
log p-value:-8.434e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif16.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.0 +/- 0.0bp
Average Position of motif in Background11.5 +/- 1.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:CGTGACCTCC
-GTGACCTT-
A G T C A C T G A C G T A C T G C G T A A G T C A G T C A C G T A G T C A G T C
A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:2
Score:0.78
Offset:2
Orientation:reverse strand
Alignment:CGTGACCTCC
--TGACCYCT
A G T C A C T G A C G T A C T G C G T A A G T C A G T C A C G T A G T C A G T C
A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

PAX5/MA0014.3/Jaspar

Match Rank:3
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---CGTGACCTCC
GAGCGTGACCCC-
A C G T A C G T A C G T A G T C A C T G A C G T A C T G C G T A A G T C A G T C A C G T A G T C A G T C
T C A G C T G A T A C G A G T C T C A G G C A T T A C G C T G A T A G C A G T C G T A C A G T C A C G T

NR2C1/MA1535.1/Jaspar

Match Rank:4
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:CGTGACCTCC
-NTGACCTCN
A G T C A C T G A C G T A C T G C G T A A G T C A G T C A C G T A G T C A G T C
A C G T C T A G A G C T A T C G G T C A A G T C G T A C A G C T G A T C C A T G

COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer

Match Rank:5
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:CGTGACCTCC----
--TGACCTYTGVMC
A G T C A C T G A C G T A C T G C G T A A G T C A G T C A C G T A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G C A T T C A G T G C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A T G A C A T G C

NR2C2(var.2)/MA1536.1/Jaspar

Match Rank:6
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:CGTGACCTCC
-NTGACCTN-
A G T C A C T G A C G T A C T G C G T A A G T C A G T C A C G T A G T C A G T C
A C G T C G T A A G C T T C A G G T C A G T A C T G A C A G C T A G T C A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:CGTGACCTCC
--TGACCTYA
A G T C A C T G A C G T A C T G C G T A A G T C A G T C A C G T A G T C A G T C
A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:CGTGACCTCC
--TGACCT--
A G T C A C T G A C G T A C T G C G T A A G T C A G T C A C G T A G T C A G T C
A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T

EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer

Match Rank:9
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:CGTGACCTCC----
--TGACCYYTGVYN
A G T C A C T G A C G T A C T G C G T A A G T C A G T C A C G T A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C A G T C G A G T A C A G T C A G C T A G T C C G A T C A T G T G C A A G T C A G T C

ZNF135/MA1587.1/Jaspar

Match Rank:10
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CGTGACCTCC---
CCTCGACCTCCTGA
A C G T A G T C A C T G A C G T A C T G C G T A A G T C A G T C A C G T A G T C A G T C A C G T A C G T A C G T
A G T C A G T C A G C T A G T C T C A G C T G A T A G C A G T C A G C T A T G C G A T C G A C T T C A G C T G A