Information for 3-GCCTAGTAGA (Motif 28)

A C T G A G T C A G T C A C G T C G T A A C T G A C G T C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T C G T A A G T C A C G T C G T A A C T G A C T G A G T C
p-value:1e-3
log p-value:-9.141e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets93.0 +/- 0.0bp
Average Position of motif in Background99.9 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GCCTAGTAGA---
GCACAYAGTAGGKCY
A C G T A C G T A C T G A G T C A G T C A C G T C G T A A C T G A C G T C G T A A C T G C G T A A C G T A C G T A C G T
C T A G G A T C T C G A A T G C T C G A A G C T C T G A A C T G A C G T C T G A A C T G A C T G A C G T A G T C G A T C

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GCCTAGTAGA
AGGCCTAG----
A C G T A C G T A C T G A G T C A G T C A C G T C G T A A C T G A C G T C G T A A C T G C G T A
T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T A C G T

NFIC/MA0161.2/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GCCTAGTAGA
NNTGCCAAGNN--
A C G T A C G T A C G T A C T G A G T C A G T C A C G T C G T A A C T G A C G T C G T A A C T G C G T A
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCCTAGTAGA
AGGCCTNG----
A C G T A C G T A C T G A G T C A G T C A C G T C G T A A C T G A C G T C G T A A C T G C G T A
C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T A C G T

PB0181.1_Spdef_2/Jaspar

Match Rank:5
Score:0.58
Offset:-7
Orientation:forward strand
Alignment:-------GCCTAGTAGA
GATAACATCCTAGTAG-
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C G T C G T A A C T G A C G T C G T A A C T G C G T A
C T A G C G T A A C G T G C T A C T G A A G T C C G T A C G A T G A T C A G T C A G C T G C T A A C T G G C A T C G T A T C A G A C G T

ZKSCAN1/MA1585.1/Jaspar

Match Rank:6
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GCCTAGTAGA--
--ATAGTAGGTG
A C T G A G T C A G T C A C G T C G T A A C T G A C G T C G T A A C T G C G T A A C G T A C G T
A C G T A C G T T C G A A G C T T G C A C T A G A C G T G T C A A T C G C A T G A G C T T A C G

ZSCAN29/MA1602.1/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCCTAGTAGA--
NCNGTGTAGACG
A C T G A G T C A G T C A C G T C G T A A C T G A C G T C G T A A C T G C G T A A C G T A C G T
A T G C G A T C A G T C T A C G A G C T C T A G C A G T C T G A A C T G T C G A A G T C T C A G

HOXC13/MA0907.1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCCTAGTAGA--
-GCTCGTAAAAA
A C T G A G T C A G T C A C G T C G T A A C T G A C G T C G T A A C T G C G T A A C G T A C G T
A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PH0048.1_Hoxa13/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GCCTAGTAGA----
AAACCTCGTAAAATTT
A C G T A C G T A C T G A G T C A G T C A C G T C G T A A C T G A C G T C G T A A C T G C G T A A C G T A C G T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

HMBOX1/MA0895.1/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GCCTAGTAGA-
-ACTAGTTAAC
A C T G A G T C A G T C A C G T C G T A A C T G A C G T C G T A A C T G C G T A A C G T
A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C