Information for 2-GCGTATTG (Motif 36)

A C T G A G T C A C T G A C G T C G T A A C G T A C G T A C T G
Reverse Opposite:
A G T C C G T A C G T A A C G T C G T A A G T C A C T G A G T C
p-value:1e-2
log p-value:-5.645e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif120.3
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets153.0 +/- 0.0bp
Average Position of motif in Background92.0 +/- 120.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0106.1_Arid5a_2/Jaspar

Match Rank:1
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----GCGTATTG----
TNNTTTCGTATTNNANN
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C T G A C G T C G T A A C G T A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A G C T T C G A G C A T G A C T G A C T A T G C A T C G A C G T T G C A A C G T C G A T A C T G G C A T C T G A G A C T T A C G

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GCGTATTG-
NNTGTGGATTSS
A C G T A C G T A C G T A C T G A G T C A C T G A C G T C G T A A C G T A C G T A C T G A C G T
C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G

Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer

Match Rank:3
Score:0.66
Offset:3
Orientation:forward strand
Alignment:GCGTATTG---
---TATTGAYY
A C T G A G T C A C T G A C G T C G T A A C G T A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T G C A T C G T A C G A T G A C T A C T G C T G A G A C T G A T C

PB0183.1_Sry_2/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCGTATTG--------
CNNNTATTGTTCNNNNN
A C G T A C T G A G T C A C T G A C G T C G T A A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A

FOXH1/MA0479.1/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCGTATTG--
TGTGGATTNNN
A C G T A C T G A G T C A C T G A C G T C G T A A C G T A C G T A C T G A C G T A C G T
C G A T A C T G A C G T A C T G C A T G C G T A G C A T A C G T A T C G T C A G T C G A

PB0143.1_Klf7_2/Jaspar

Match Rank:6
Score:0.62
Offset:-7
Orientation:reverse strand
Alignment:-------GCGTATTG--
NNNTNGGGCGTATNNTN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C T G A C G T C G T A A C G T A C G T A C T G A C G T A C G T
G T C A C G T A A C T G G C A T C A G T C T A G A C T G A C T G G A T C C T A G A C G T G C T A G C A T T C A G G A T C A G C T A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCGTATTG--------
AATCAATTGTTCCGCTA
A C G T A C T G A G T C A C T G A C G T C G T A A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G A C T C A G A G C T A T G C G C T A C G T A A G C T C G A T A T C G C G A T A G C T A T G C T G A C A C T G G A T C C A G T T C G A

Sox17/MA0078.1/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GCGTATTG--
-CTCATTGTC
A C T G A G T C A C T G A C G T C G T A A C G T A C G T A C T G A C G T A C G T
A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C

SOX8/MA0868.2/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GCGTATTG----
--CCATTGTTCT
A C T G A G T C A C T G A C G T C G T A A C G T A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A T G C G A T C C G T A C A G T C G A T T C A G C G A T G A C T G A T C A C G T

Sox5/MA0087.1/Jaspar

Match Rank:10
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GCGTATTG---
----ATTGTTA
A C T G A G T C A C T G A C G T C G T A A C G T A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T