Information for 4-CTCGGGTCAA (Motif 16)

A G T C A C G T A G T C A C T G A C T G A C T G A C G T A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G C G T A A G T C A G T C A G T C A C T G C G T A A C T G
p-value:1e-3
log p-value:-8.973e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets169.0 +/- 0.0bp
Average Position of motif in Background146.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0153.1_Nr2f2_2/Jaspar

Match Rank:1
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---CTCGGGTCAA---
CGCGCCGGGTCACGTA
A C G T A C G T A C G T A G T C A C G T A G T C A C T G A C T G A C T G A C G T A G T C C G T A C G T A A C G T A C G T A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

PB0157.1_Rara_2/Jaspar

Match Rank:2
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---CTCGGGTCAA---
AGAGCGGGGTCAAGTA
A C G T A C G T A C G T A G T C A C G T A G T C A C T G A C T G A C T G A C G T A G T C C G T A C G T A A C G T A C G T A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

PB0030.1_Hnf4a_1/Jaspar

Match Rank:3
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---CTCGGGTCAA----
CTCCAGGGGTCAATTGA
A C G T A C G T A C G T A G T C A C G T A G T C A C T G A C T G A C T G A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.71
Offset:3
Orientation:forward strand
Alignment:CTCGGGTCAA
---AGGTCA-
A G T C A C G T A G T C A C T G A C T G A C T G A C G T A G T C C G T A C G T A
A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T

EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer

Match Rank:5
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CTCGGGTCAA
NRBCARRGGTCA-
A C G T A C G T A C G T A G T C A C G T A G T C A C T G A C T G A C T G A C G T A G T C C G T A C G T A
T C A G T C A G A C G T G T A C G C T A T C A G C T G A A C T G A C T G A G C T A G T C C G T A A C G T

NR2C1/MA1535.1/Jaspar

Match Rank:6
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CTCGGGTCAA
-CGAGGTCAC
A G T C A C G T A G T C A C T G A C T G A C T G A C G T A G T C C G T A C G T A
A C G T G T A C C T A G T C G A A C T G A C T G A C G T A T G C C T G A G A T C

NR2C2(var.2)/MA1536.1/Jaspar

Match Rank:7
Score:0.68
Offset:2
Orientation:forward strand
Alignment:CTCGGGTCAA
--GAGGTCAT
A G T C A C G T A G T C A C T G A C T G A C T G A C G T A G T C C G T A C G T A
A C G T A C G T T C A G T C G A A C T G A C T G A C G T A G T C C T G A G C A T

PB0057.1_Rxra_1/Jaspar

Match Rank:8
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CTCGGGTCAA----
NTNNNGGGGTCANGNNN
A C G T A C G T A C G T A G T C A C G T A G T C A C T G A C T G A C T G A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CTCGGGTCAA
-TRAGGTCA-
A G T C A C G T A G T C A C T G A C T G A C T G A C G T A G T C C G T A C G T A
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:10
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CTCGGGTCAA---
CAAAGGTCAAGGG
A G T C A C G T A G T C A C T G A C T G A C T G A C G T A G T C C G T A C G T A A C G T A C G T A C G T
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G