Information for 9-GTTGAGGGAC (Motif 17)

A C T G A C G T A C G T A C T G C G T A A C T G A C T G A C T G C G T A A G T C
Reverse Opposite:
A C T G A C G T A G T C A G T C A G T C A C G T A G T C C G T A C G T A A G T C
p-value:1e-3
log p-value:-8.009e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif31.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets61.0 +/- 0.0bp
Average Position of motif in Background83.3 +/- 85.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PKNOX1/MA0782.2/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GTTGAGGGAC-----
TTTGAGTGACAGCTA
A C T G A C G T A C G T A C T G C G T A A C T G A C T G A C T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T
C G A T G C A T C G A T T C A G C T G A A C T G C G A T A T C G C T G A G A T C C G T A A C T G T A G C A G C T C T G A

PBX3/MA1114.1/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GTTGAGGGAC------
GGGTGAGTGACAGGCGG
A C G T A C T G A C G T A C G T A C T G C G T A A C T G A C T G A C T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
T A C G A C T G A C T G C G A T T C A G C G T A A C T G C A G T T A C G C T G A T A G C C T G A A C T G T A C G A T G C T C A G A T C G

NKX2-5/MA0063.2/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GTTGAGGGAC
NNTTGAGTGNN
A C G T A C T G A C G T A C G T A C T G C G T A A C T G A C T G A C T G C G T A A G T C
C G A T A G C T C G A T G C A T C T A G C G T A C T A G G A C T C T A G A C T G A G C T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GTTGAGGGAC---
-BTGABTGACAGS
A C T G A C G T A C G T A C T G C G T A A C T G A C T G A C T G C G T A A G T C A C G T A C G T A C G T
A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GTTGAGGGAC---
-NTGATTGACAGN
A C T G A C G T A C G T A C T G C G T A A C T G A C T G A C T G C G T A A G T C A C G T A C G T A C G T
A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GTTGAGGGAC-
CTTGAGTGGCT
A C T G A C G T A C G T A C T G C G T A A C T G A C T G A C T G C G T A A G T C A C G T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Znf281/MA1630.1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GTTGAGGGAC-
GGTGGGGGAGG
A C T G A C G T A C G T A C T G C G T A A C T G A C T G A C T G C G T A A G T C A C G T
C T A G T A C G A G C T T A C G T A C G T A C G A T C G A C T G G T C A C A T G T C A G

ZNF282/MA1154.1/Jaspar

Match Rank:8
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----GTTGAGGGAC--
NTCGTGTTGTGGGAAAG
A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C G T A C T G C G T A A C T G A C T G A C T G C G T A A G T C A C G T A C G T
T A C G G A C T G T A C T A C G C A G T T A C G C G A T G C A T C T A G C A G T T A C G C T A G A T C G G C T A G C T A C G T A T A C G

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GTTGAGGGAC----
--TGAGTGACAGSC
A C T G A C G T A C G T A C T G C G T A A C T G A C T G A C T G C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

NKX2-2/MA1645.1/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GTTGAGGGAC--
NNNTTGAGTGGNNN
A C G T A C G T A C T G A C G T A C G T A C T G C G T A A C T G A C T G A C T G C G T A A G T C A C G T A C G T
C G A T C G A T A G T C A G C T C A G T T A C G C G T A C A T G C G A T C T A G A C T G G C A T C G A T C T G A