Information for 6-ATATTAAGAGGG (Motif 6)

C G T A A C G T C G T A A C G T A C G T C G T A C G T A A C T G C G T A A C T G A C T G A C T G
Reverse Opposite:
A G T C A G T C A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C G T C G T A A C G T
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets123.0 +/- 0.0bp
Average Position of motif in Background127.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0115.1_Nkx2-6/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-ATATTAAGAGGG---
AATNTTAAGTGGNTNN
A C G T C G T A A C G T C G T A A C G T A C G T C G T A C G T A A C T G C G T A A C T G A C T G A C T G A C G T A C G T A C G T
C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--ATATTAAGAGGG--
ANATTTTACGAGNNNN
A C G T A C G T C G T A A C G T C G T A A C G T A C G T C G T A C G T A A C T G C G T A A C T G A C T G A C T G A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

Nkx3-1/MA0124.2/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:ATATTAAGAGGG
---TTAAGTGGT
C G T A A C G T C G T A A C G T A C G T C G T A C G T A A C T G C G T A A C T G A C T G A C T G
A C G T A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T

Arid5a/MA0602.1/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---ATATTAAGAGGG
CTAATATTGCTAAA-
A C G T A C G T A C G T C G T A A C G T C G T A A C G T A C G T C G T A C G T A A C T G C G T A A C T G A C T G A C T G
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---ATATTAAGAGGG
CTAATATTGCTAAA-
A C G T A C G T A C G T C G T A A C G T C G T A A C G T A C G T C G T A C G T A A C T G C G T A A C T G A C T G A C T G
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-ATATTAAGAGGG---
AATTTCAAGTGGCTTN
A C G T C G T A A C G T C G T A A C G T A C G T C G T A C G T A A C T G C G T A A C T G A C T G A C T G A C G T A C G T A C G T
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A

Arid3b/MA0601.1/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-ATATTAAGAGGG
NTAATTAATAT--
A C G T C G T A A C G T C G T A A C G T A C G T C G T A C G T A A C T G C G T A A C T G A C T G A C T G
A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T A C G T A C G T

PH0114.1_Nkx2-5/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-ATATTAAGAGGG---
AAATTCAAGTGGNTTN
A C G T C G T A A C G T C G T A A C G T A C G T C G T A C G T A A C T G C G T A A C T G A C T G A C T G A C G T A C G T A C G T
C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A

PH0068.1_Hoxc13/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--ATATTAAGAGGG--
NAATTTTACGAGNTNN
A C G T A C G T C G T A A C G T C G T A A C G T A C G T C G T A C G T A A C T G C G T A A C T G A C T G A C T G A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

HOXC13/MA0907.1/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:ATATTAAGAGGG
NTTTTACGAGN-
C G T A A C G T C G T A A C G T A C G T C G T A C G T A A C T G C G T A A C T G A C T G A C T G
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C A C G T