Information for 9-CAGTTCATCCAG (Motif 9)

A G T C C G T A A C T G A C G T A C G T A G T C C G T A A C G T A G T C A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A C T G C G T A A C G T A C T G C G T A C G T A A G T C A C G T A C T G
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets187.0 +/- 0.0bp
Average Position of motif in Background116.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR1I3/MA1534.1/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CAGTTCATCCAG
AAAGTTCAT----
A C G T A G T C C G T A A C T G A C G T A C G T A G T C C G T A A C G T A G T C A G T C C G T A A C T G
C G T A C T G A C T G A A C T G A C G T C A G T A G T C C T G A G A C T A C G T A C G T A C G T A C G T

NR1I2/MA1533.1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CAGTTCATCCAG-----
GAGTTCATNGAGTTCAN
A G T C C G T A A C T G A C G T A C G T A G T C C G T A A C G T A G T C A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T
T C A G T C G A C T A G A C G T A C G T G A T C C T G A G A C T A G T C T A C G C T G A A C T G A C G T A C G T G A T C T C G A G A C T

DPRX/MA1480.1/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CAGTTCATCCAG
-AGATAATCCC-
A G T C C G T A A C T G A C G T A C G T A G T C C G T A A C G T A G T C A G T C C G T A A C T G
A C G T T C G A T A C G G T C A A C G T T G C A C G T A A C G T G T A C A G T C A T G C A C G T

VDR/MA0693.2/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CAGTTCATCCAG
TGAGTTCA-----
A C G T A G T C C G T A A C T G A C G T A C G T A G T C C G T A A C G T A G T C A G T C C G T A A C T G
G A C T T C A G C T G A A C T G A C G T C A G T G A T C C T G A A C G T A C G T A C G T A C G T A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CAGTTCATCCAG---
NNCATTCATTCATNNN
A C G T A G T C C G T A A C T G A C G T A C G T A G T C C G T A A C G T A G T C A G T C C G T A A C T G A C G T A C G T A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

RHOXF1/MA0719.1/Jaspar

Match Rank:6
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CAGTTCATCCAG
---ATAATCCC-
A G T C C G T A A C T G A C G T A C G T A G T C C G T A A C G T A G T C A G T C C G T A A C T G
A C G T A C G T A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CAGTTCATCCAG
CACTTCCTCT--
A G T C C G T A A C T G A C G T A C G T A G T C C G T A A C G T A G T C A G T C C G T A A C T G
A T G C C T G A A T G C C G A T A C G T A G T C A G T C A G C T A T G C G C A T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CAGTTCATCCAG
--GCTAATCC--
A G T C C G T A A C T G A C G T A C G T A G T C C G T A A C G T A G T C A G T C C G T A A C T G
A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T

RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CAGTTCATCCAG
CAAAGKTCAA----
A C G T A C G T A G T C C G T A A C T G A C G T A C G T A G T C C G T A A C G T A G T C A G T C C G T A A C T G
G A T C G T C A T C G A T C G A C T A G C A T G A G C T G T A C T C G A T C G A A C G T A C G T A C G T A C G T

PB0149.1_Myb_2/Jaspar

Match Rank:10
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------CAGTTCATCCAG
NNNTGGCAGTTGGTNN--
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C G T A C G T A G T C C G T A A C G T A G T C A G T C C G T A A C T G
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G A C G T A C G T