Information for 1-TTTATAGGTATT (Motif 1)

A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C T G A C G T C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A A C G T C G T A A G T C A G T C A C G T C G T A A C G T C G T A C G T A C G T A
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets6.0 +/- 0.0bp
Average Position of motif in Background193.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TTTATAGGTATT
TTTTATKRGG---
A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C T G A C G T C G T A A C G T A C G T
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T A C G T A C G T

BCL6B/MA0731.1/Jaspar

Match Rank:2
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---TTTATAGGTATT--
TGCTTTCTAGGAATTCA
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C T G A C G T C G T A A C G T A C G T A C G T A C G T
A G C T C T A G A G T C A C G T A C G T A C G T A G T C A C G T C G T A A C T G A C T G C T G A C G T A A G C T A G C T T G A C T G C A

PH0078.1_Hoxd13/Jaspar

Match Rank:3
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----TTTATAGGTATT
NNANTTTTATTGGNNN-
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C T G A C G T C G T A A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G A C G T

HOXA13/MA0650.2/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TTTATAGGTATT
GTTTTATTGGN---
A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C T G A C G T C G T A A C G T A C G T
C A T G C A G T A C G T A G C T A G C T C G T A A C G T A C G T C T A G A T C G A C T G A C G T A C G T A C G T

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TTTATAGGTATT
TTTTATTRGN---
A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C T G A C G T C G T A A C G T A C G T
C G A T A C G T A C G T G C A T C G T A G A C T C A G T C T A G A T C G G A T C A C G T A C G T A C G T

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TTTATAGGTATT
NTTTTATDRG----
A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C T G A C G T C G T A A C G T A C G T
C T A G G C A T A C G T G C A T G A C T C G T A G A C T C A T G C T A G A T C G A C G T A C G T A C G T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:7
Score:0.66
Offset:-8
Orientation:reverse strand
Alignment:--------TTTATAGGTATT
NNNNNNCTTTTATAN-----
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C T G A C G T C G T A A C G T A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T A C G T A C G T

TBP/MA0108.2/Jaspar

Match Rank:8
Score:0.66
Offset:-8
Orientation:reverse strand
Alignment:--------TTTATAGGTATT
NNNNNNCTTTTATAN-----
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C T G A C G T C G T A A C G T A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T A C G T A C G T

HOXB13/MA0901.2/Jaspar

Match Rank:9
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TTTATAGGTATT
NNATTTTATTGGNN--
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C T G A C G T C G T A A C G T A C G T
C G T A C G T A C G T A C G A T C G A T C G A T G C A T T G C A G C A T C G A T C T A G C A T G G C A T G C A T A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:10
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TTTATAGGTATT
NNAATTTTATTGGNTN-
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C T G A C G T C G T A A C G T A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T A C G T