Information for 13-GTTAATGGATAC (Motif 13)

A C T G A C G T A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C G T C G T A A G T C
Reverse Opposite:
A C T G A C G T C G T A A C G T A G T C A G T C C G T A A C G T A C G T C G T A C G T A A G T C
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets193.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1/MA1608.1/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-GTTAATGGATAC
NNCTAATGGNN--
A C G T A C T G A C G T A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C G T C G T A A G T C
A C G T T C A G G A T C C G A T C T G A C G T A G A C T C A T G C T A G T G C A G A C T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GTTAATGGATAC
GTTAATGGCC--
A C T G A C G T A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C G T C G T A A G T C
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:3
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GTTAATGGATAC
GKTAATGR----
A C T G A C G T A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C G T C G T A A G T C
A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T A C G T A C G T A C G T

VENTX/MA0724.1/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GTTAATGGATAC
-CTAATCGNT--
A C T G A C G T A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C G T C G T A A G T C
A C G T G A T C A C G T C G T A C G T A C A G T A G T C C T A G A C T G G C A T A C G T A C G T

CUX2/MA0755.1/Jaspar

Match Rank:5
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GTTAATGGATAC
--TAATCGATAA
A C T G A C G T A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C G T C G T A A G T C
A C G T A C G T G C A T C T G A C T G A A G C T A G T C C T A G C G T A G C A T G C T A G C T A

CUX1/MA0754.1/Jaspar

Match Rank:6
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GTTAATGGATAC
--TAATCGATAA
A C T G A C G T A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C G T C G T A A G T C
A C G T A C G T G A C T C T G A C T G A A G C T A G T C T C A G C G T A G C A T T G C A G T C A

DMRTC2/MA1479.1/Jaspar

Match Rank:7
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GTTAATGGATAC---
---AATTGATACATT
A C T G A C G T A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C G T C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T G C T A C G T A G C A T A C G T A T C G G T C A G C A T G T C A A T G C C G T A G C A T C A G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GTTAATGGATAC
-CTAATKGV---
A C T G A C G T A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C G T C G T A A G T C
A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T A C G T A C G T

PB0135.1_Hoxa3_2/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GTTAATGGATAC-
CCTTAATNGNTTTT
A C G T A C T G A C G T A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C G T C G T A A G T C A C G T
A G T C A T G C G A C T C G A T C G T A C G T A A C G T T C A G A C T G G C A T C G A T G A C T C A G T A G C T

PH0088.1_Isl2/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GTTAATGGATAC--
AAATTAATTGATTTNG
A C G T A C G T A C T G A C G T A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C G T C G T A A G T C A C G T A C G T
C T G A G C T A G T C A G A C T G C A T C G T A C G T A A C G T A C G T C T A G T C G A C A G T C A G T C A G T C G A T C A T G