Information for 3-CCTGTTTTACTG (Motif 3)

A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C T G
Reverse Opposite:
A G T C C G T A A C T G A C G T C G T A C G T A C G T A C G T A A G T C C G T A A C T G A C T G
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets33.0 +/- 0.0bp
Average Position of motif in Background111.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD13/MA0909.2/Jaspar

Match Rank:1
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CCTGTTTTACTG--
---GTTTTATTGGG
A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C T G A C G T A C G T A G C T A C G T C G T A A G C T A C G T A C T G A T C G A T C G

HOXA13/MA0650.2/Jaspar

Match Rank:2
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CCTGTTTTACTG--
---GTTTTATTGGN
A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T C A T G C A G T A C G T A G C T A G C T C G T A A C G T A C G T C T A G A T C G A C T G

GRHL2/MA1105.2/Jaspar

Match Rank:3
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----CCTGTTTTACTG
NAAACCTGTTTN----
A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C T G
G T C A T C G A C T G A C T G A A T G C G A T C C G A T A T C G G A C T G A C T A G C T A C G T A C G T A C G T A C G T A C G T

HOXB13/MA0901.2/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CCTGTTTTACTG---
-NNATTTTATTGGNN
A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C T G A C G T A C G T A C G T
A C G T C G T A C G T A C G T A C G A T C G A T C G A T G C A T T G C A G C A T C G A T C T A G C A T G G C A T G C A T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CCTGTTTTACTG--
--DGWTTTATGRCN
A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C T G A C G T A C G T
A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

PB0141.1_Isgf3g_2/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CCTGTTTTACTG
NNGTANTGTTTTNC--
A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C T G
G A C T C T G A C A T G C G A T G T C A T G C A G C A T A T C G G A C T G C A T G C A T G C A T A T C G T G A C A C G T A C G T

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CCTGTTTTACTG-
---NTTTTATDRG
A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C T G A C G T
A C G T A C G T A C G T C T A G G C A T A C G T G C A T G A C T C G T A G A C T C A T G C T A G A T C G

IKZF1/MA1508.1/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CCTGTTTTACTG
NCTTCCTGTTNN----
A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C T G
T C G A A G T C G C A T A G C T A G T C G A T C G C A T A T C G A G C T A C G T A G C T A G T C A C G T A C G T A C G T A C G T

CDX2/MA0465.2/Jaspar

Match Rank:9
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CCTGTTTTACTG---
---NTTTTATTGCNN
A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T C G A T G C A T C G A T G C A T G C A T T C G A G A C T C A G T C T A G G A T C G C A T G A C T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:10
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CCTGTTTTACTG--
----TTTAATTGCN
A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C