Information for 2-AAAGTAGGCCAA (Motif 2)

C G T A C G T A C G T A A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G A C T G A G T C A G T C A C G T C G T A A G T C A C G T A C G T A C G T
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets25.0 +/- 0.0bp
Average Position of motif in Background137.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:1
Score:0.74
Offset:0
Orientation:forward strand
Alignment:AAAGTAGGCCAA
WAABTAGGTCAV
C G T A C G T A C G T A A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A C G T A
C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G

RORA(var.2)/MA0072.1/Jaspar

Match Rank:2
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--AAAGTAGGCCAA
TATAAGTAGGTCAA
A C G T A C G T C G T A C G T A C G T A A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A C G T A
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:3
Score:0.73
Offset:0
Orientation:forward strand
Alignment:AAAGTAGGCCAA---
AAWCTAGGTCARDNN
C G T A C G T A C G T A A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A C G T A A C G T A C G T A C G T
C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A

RORC/MA1151.1/Jaspar

Match Rank:4
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-AAAGTAGGCCAA
ATAAGTAGGTCA-
A C G T C G T A C G T A C G T A A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A C G T A
C T G A C G A T G C T A C G T A A C T G A C G T T C G A C A T G C T A G A C G T A G T C C T G A A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.72
Offset:1
Orientation:forward strand
Alignment:AAAGTAGGCCAA
-AAYTAGGTCA-
C G T A C G T A C G T A A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A C G T A
A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:6
Score:0.72
Offset:1
Orientation:forward strand
Alignment:AAAGTAGGCCAA
-AAYTAGGTCA-
C G T A C G T A C G T A A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A C G T A
A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T

ZKSCAN1/MA1585.1/Jaspar

Match Rank:7
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AAAGTAGGCCAA
ATAGTAGGTG--
C G T A C G T A C G T A A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A C G T A
T C G A A G C T T G C A C T A G A C G T G T C A A T C G C A T G A G C T T A C G A C G T A C G T

RORB/MA1150.1/Jaspar

Match Rank:8
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AAAGTAGGCCAA
-AATTAGGTCAC
C G T A C G T A C G T A A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A C G T A
A C G T C G T A G C T A C G A T A C G T C T G A A C T G C T A G A G C T G A T C C T G A G A T C

NFYB/MA0502.2/Jaspar

Match Rank:9
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:AAAGTAGGCCAA----
----NTGGCCAATGAG
C G T A C G T A C G T A A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C A C G T C T A G T C A G G A T C G T A C G T C A T C G A C G A T T A C G T C G A T A C G

ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer

Match Rank:10
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AAAGTAGGCCAA
GCACAYAGTAGGKCY-
A C G T A C G T A C G T A C G T C G T A C G T A C G T A A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A C G T A
C T A G G A T C T C G A A T G C T C G A A G C T C T G A A C T G A C G T C T G A A C T G A C T G A C G T A G T C G A T C A C G T