Information for 2-GCCATTCACG (Motif 26)

A C T G A G T C A G T C C G T A A C G T A C G T A G T C C G T A A G T C A C T G
Reverse Opposite:
A G T C A C T G A C G T A C T G C G T A C G T A A C G T A C T G A C T G A G T C
p-value:1e-4
log p-value:-9.623e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets169.0 +/- 0.0bp
Average Position of motif in Background62.6 +/- 7.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-GCCATTCACG
GGCCATTAAC-
A C G T A C T G A G T C A G T C C G T A A C G T A C G T A G T C C G T A A G T C A C T G
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:2
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GCCATTCACG-----
-ACATTCATGACACG
A C T G A G T C A G T C C G T A A C G T A C G T A G T C C G T A A G T C A C T G A C G T A C G T A C G T A C G T A C G T
A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----GCCATTCACG
ACTAGCCAATCA--
A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C G T A C G T A G T C C G T A A G T C A C T G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T

NFYC/MA1644.1/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GCCATTCACG
AGCCAATCAGA
A C G T A C T G A G T C A G T C C G T A A C G T A C G T A G T C C G T A A G T C A C T G
T C G A C T A G A G T C G T A C G C T A T C G A G A C T T A G C T C G A T A C G T G C A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:5
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GCCATTCACG
SCTGTCAVTCAV-
A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C G T A C G T A G T C C G T A A G T C A C T G
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

NFYA/MA0060.3/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCCATTCACG
AACCAATCAGA
A C G T A C T G A G T C A G T C C G T A A C G T A C G T A G T C C G T A A G T C A C T G
T C G A C T G A A G T C G A T C G C T A T C G A G A C T T A G C T C G A T A C G T G C A

PB0170.1_Sox17_2/Jaspar

Match Rank:7
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GCCATTCACG----
GACCACATTCATACAAT
A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C G T A C G T A G T C C G T A A G T C A C T G A C G T A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GCCATTCACG
NCTGTCAATCAN-
A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C G T A C G T A G T C C G T A A G T C A C T G
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T

MSANTD3/MA1523.1/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCCATTCACG
GTACACTCAC-
A C G T A C T G A G T C A G T C C G T A A C G T A C G T A G T C C G T A A G T C A C T G
A T C G A C G T T G C A G A T C C G T A G A T C G C A T G A T C G T C A G T A C A C G T

PB0138.1_Irf4_2/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCCATTCACG-----
AGTATTCTCGGTTGC
A C T G A G T C A G T C C G T A A C G T A C G T A G T C C G T A A G T C A C T G A C G T A C G T A C G T A C G T A C G T
T C A G T A C G A G C T G C T A G A C T C A G T G A T C A G C T G A T C T C A G T C A G C G A T G A C T C A T G A T G C