Information for 11-ATGAGTAATTAG (Motif 12)

C G T A A C G T A C T G C G T A A C T G A C G T C G T A C G T A A C G T A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A C G T A A C G T A C G T C G T A A G T C A C G T A G T C C G T A A C G T
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets172.0 +/- 0.0bp
Average Position of motif in Background77.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD3/MA0912.2/Jaspar

Match Rank:1
Score:0.79
Offset:4
Orientation:reverse strand
Alignment:ATGAGTAATTAG
----GTAATTAG
C G T A A C G T A C T G C G T A A C T G A C G T C G T A C G T A A C G T A C G T C G T A A C T G
A C G T A C G T A C G T A C G T T A C G A G C T G T C A C G T A A C G T A C G T C T G A T C A G

PH0039.1_Mnx1/Jaspar

Match Rank:2
Score:0.78
Offset:1
Orientation:forward strand
Alignment:ATGAGTAATTAG-----
-GTACTAATTAGTGGCG
C G T A A C G T A C T G C G T A A C T G A C G T C G T A C G T A A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C T G A C G T T G C A A T G C G A C T G T C A C G T A G A C T A C G T C T G A A T C G A C G T C T A G T A C G G A T C T A C G

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:3
Score:0.74
Offset:5
Orientation:forward strand
Alignment:ATGAGTAATTAG-
-----TAATTAGN
C G T A A C G T A C T G C G T A A C T G A C G T C G T A C G T A A C G T A C G T C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C

VSX2/MA0726.1/Jaspar

Match Rank:4
Score:0.74
Offset:4
Orientation:reverse strand
Alignment:ATGAGTAATTAG
----NTAATTAG
C G T A A C G T A C T G C G T A A C T G A C G T C G T A C G T A A C G T A C G T C G T A A C T G
A C G T A C G T A C G T A C G T T G A C G A C T C G T A C T G A A C G T C G A T C T G A T C A G

PH0061.1_Hoxb6/Jaspar

Match Rank:5
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-ATGAGTAATTAG---
TATTGGTAATTACCTT
A C G T C G T A A C G T A C T G C G T A A C T G A C G T C G T A C G T A A C G T A C G T C G T A A C T G A C G T A C G T A C G T
G C A T G C T A C A G T C A G T A T C G A C T G A G C T G T C A C G T A C G A T C A G T C T G A G T A C T A G C C A G T A G C T

VAX2/MA0723.1/Jaspar

Match Rank:6
Score:0.74
Offset:4
Orientation:reverse strand
Alignment:ATGAGTAATTAG
----NTAATTAG
C G T A A C G T A C T G C G T A A C T G A C G T C G T A C G T A A C G T A C G T C G T A A C T G
A C G T A C G T A C G T A C G T T C A G G A C T G T C A G C T A C G A T C A G T C T G A T C A G

EMX1/MA0612.2/Jaspar

Match Rank:7
Score:0.74
Offset:4
Orientation:forward strand
Alignment:ATGAGTAATTAG
----CTAATTAG
C G T A A C G T A C T G C G T A A C T G A C G T C G T A C G T A A C G T A C G T C G T A A C T G
A C G T A C G T A C G T A C G T A T G C G A C T G T C A C G T A A C G T A C G T C G T A T A C G

HOXB7/MA1501.1/Jaspar

Match Rank:8
Score:0.73
Offset:3
Orientation:forward strand
Alignment:ATGAGTAATTAG-
---GGTAATTAAC
C G T A A C G T A C T G C G T A A C T G A C G T C G T A C G T A A C G T A C G T C G T A A C T G A C G T
A C G T A C G T A C G T T C A G A C T G A G C T G T C A G T C A A C G T G C A T C T G A T C G A T A G C

VSX1/MA0725.1/Jaspar

Match Rank:9
Score:0.73
Offset:4
Orientation:reverse strand
Alignment:ATGAGTAATTAG
----NTAATTAG
C G T A A C G T A C T G C G T A A C T G A C G T C G T A C G T A A C G T A C G T C G T A A C T G
A C G T A C G T A C G T A C G T T G C A G A C T G T C A C T G A A G C T C A G T C T G A C T A G

EMX2/MA0886.1/Jaspar

Match Rank:10
Score:0.73
Offset:3
Orientation:forward strand
Alignment:ATGAGTAATTAG-
---GCTAATTAGC
C G T A A C G T A C T G C G T A A C T G A C G T C G T A C G T A A C G T A C G T C G T A A C T G A C G T
A C G T A C G T A C G T T C A G A T G C G A C T G T C A C G T A A C G T A C G T C G T A T C A G A T G C