Information for 20-GGGCAAATTC (Motif 33)

A C T G A C T G A C T G A G T C C G T A C G T A C G T A A C G T A C G T A G T C
Reverse Opposite:
A C T G C G T A C G T A A C G T A C G T A C G T A C T G A G T C A G T C A G T C
p-value:1e-2
log p-value:-6.739e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif33.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets90.0 +/- 0.0bp
Average Position of motif in Background132.1 +/- 70.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GGGCAAATTC--
--GGAAATTCCC
A C T G A C T G A C T G A G T C C G T A C G T A C G T A A C G T A C G T A G T C A C G T A C G T
A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

THAP1/MA0597.1/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GGGCAAATTC
TNNGGGCAG----
A C G T A C G T A C G T A C T G A C T G A C T G A G T C C G T A C G T A C G T A A C G T A C G T A G T C
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T

PB0171.1_Sox18_2/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GGGCAAATTC-----
GGACTGAATTCATGCC
A C G T A C T G A C T G A C T G A G T C C G T A C G T A C G T A A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T
C T A G A C T G C T G A A T G C A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A C G A T C T A G G T A C T G A C

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GGGCAAATTC--
--GGAAATTCCC
A C T G A C T G A C T G A G T C C G T A C G T A C G T A A C G T A C G T A G T C A C G T A C G T
A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

HIC2/MA0738.1/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GGGCAAATTC
NGTGGGCAT----
A C G T A C G T A C G T A C T G A C T G A C T G A G T C C G T A C G T A C G T A A C G T A C G T A G T C
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:6
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------GGGCAAATTC
NNNNTTGGGCACNNCN
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C T G A G T C C G T A C G T A C G T A A C G T A C G T A G T C
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

HNF4G/MA0484.2/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GGGCAAATTC----
-TCCAAAGTCCAGA
A C T G A C T G A C T G A G T C C G T A C G T A C G T A A C G T A C G T A G T C A C G T A C G T A C G T A C G T
A C G T C A G T A G T C G A T C T C G A T C G A C T G A A C T G C A G T G A T C G A T C C G T A T C A G C T G A

HNF4A/MA0114.4/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GGGCAAATTC----
-TCCAAAGTCCAAA
A C T G A C T G A C T G A G T C C G T A C G T A C G T A A C G T A C G T A G T C A C G T A C G T A C G T A C G T
A C G T C A G T G A T C G A T C T G C A T C G A C T G A A C T G C A G T G A T C G A T C C G T A C T G A C T G A

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GGGCAAATTC---
-GGGAAATCCCCN
A C T G A C T G A C T G A G T C C G T A C G T A C G T A A C G T A C G T A G T C A C G T A C G T A C G T
A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

PAX4/MA0068.2/Jaspar

Match Rank:10
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GGGCAAATTC-
---CTAATTAG
A C T G A C T G A C T G A G T C C G T A C G T A C G T A A C G T A C G T A G T C A C G T
A C G T A C G T A C G T A G T C C A G T G C T A C G T A A C G T G C A T G T C A T C A G