Information for 1-GCCGTCGGGT (Motif 1)

A C T G A G T C A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T
Reverse Opposite:
C G T A A G T C A G T C A G T C A C T G C G T A A G T C A C T G A C T G A G T C
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets126.0 +/- 0.0bp
Average Position of motif in Background139.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0179.1_Sp100_2/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCCGTCGGGT-----
TCCGTCGCTTAAAAG
A C T G A G T C A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T G C G A T C T C A G G C A T T G A C A C T G G A T C A C G T C A G T G C T A C G T A G C T A C G T A A C T G

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GCCGTCGGGT-
TGCCCNGGGGCA
A C G T A C T G A G T C A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T A C G T
G A C T T A C G T A G C A G T C A G T C A C T G T C A G T C A G T C A G A T C G A T G C C T G A

TFAP2B/MA0811.1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCCGTCGGGT-
TGCCCTNGGGCA
A C G T A C T G A G T C A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T A C G T
G A C T T A C G A T G C A G T C A G T C A G C T T C A G T C A G C T A G A T C G A T G C C T G A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCCGTCGGGT
-CTGTCTGG-
A C T G A G T C A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T
A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T

TFAP2C/MA0524.2/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCCGTCGGGT-
TGCCCTNGGGCA
A C G T A C T G A G T C A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T A C G T
G A C T T A C G A T G C G A T C A G T C A G C T T C A G T C A G C T A G A T C G A T G C C T G A

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCCGTCGGGT--
NTGCCCTAGGGCAA
A C G T A C G T A C T G A G T C A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T A C G T A C G T
C G T A G A C T T A C G A T G C A G T C A G T C A G C T T C G A T C A G C T A G A T C G A T G C C T G A G C T A

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCCGTCGGGT--
NTGCCCANNGGTNA
A C G T A C G T A C T G A G T C A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T A C G T A C G T
T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCCGTCGGGT
VBSYGTCTGG-
A C G T A C T G A G T C A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GCCGTCGGGT--
NTGCCCTTGGGCGN
A C G T A C G T A C T G A G T C A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T A C G T A C G T
G A T C G C A T T C A G G T A C G A T C G A T C C G A T G A C T C T A G C T A G C A T G A G T C C T A G T A C G

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GCCGTCGGGT----
NNTNNTGTCTGGNNTNG
A C G T A C G T A C G T A C T G A G T C A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G