Information for 7-GTCTAGTCAG (Motif 28)

A C T G A C G T A G T C A C G T C G T A A C T G A C G T A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G C G T A A G T C A C G T C G T A A C T G C G T A A G T C
p-value:1e-3
log p-value:-8.842e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets86.0 +/- 0.0bp
Average Position of motif in Background87.8 +/- 84.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD5/MA1557.1/Jaspar

Match Rank:1
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-GTCTAGTCAG
TGTCTAGACA-
A C G T A C T G A C G T A G T C A C G T C G T A A C T G A C G T A G T C C G T A A C T G
G A C T T C A G C A G T T G A C A C G T T G C A T A C G G T C A G A T C G C T A A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:2
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-GTCTAGTCAG
CGTCTAGACA-
A C G T A C T G A C G T A G T C A C G T C G T A A C T G A C G T A G T C C G T A A C T G
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T

Smad4/MA1153.1/Jaspar

Match Rank:3
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GTCTAGTCAG
TGTCTAGA---
A C G T A C T G A C G T A G T C A C G T C G T A A C T G A C G T A G T C C G T A A C T G
G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A A C G T A C G T A C G T

ZSCAN29/MA1602.1/Jaspar

Match Rank:4
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GTCTAGTCAG-
CGTCTACACGGG
A C G T A C T G A C G T A G T C A C G T C G T A A C T G A C G T A G T C C G T A A C T G A C G T
A G T C C T A G A G C T G T A C A G C T G C T A G A T C C T G A A T G C T C A G C T A G T A C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GTCTAGTCAG
CTGTCTGG----
A C G T A C G T A C T G A C G T A G T C A C G T C G T A A C T G A C G T A G T C C G T A A C T G
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T

PH0040.1_Hmbox1/Jaspar

Match Rank:6
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GTCTAGTCAG----
GAAAACTAGTTAACATC
A C G T A C G T A C G T A C T G A C G T A G T C A C G T C G T A A C T G A C G T A G T C C G T A A C T G A C G T A C G T A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GTCTAGTCAG--
--TGAGTCAGCA
A C T G A C G T A G T C A C G T C G T A A C T G A C G T A G T C C G T A A C T G A C G T A C G T
A C G T A C G T G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GTCTAGTCAG
VBSYGTCTGG----
A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T C G T A A C T G A C G T A G T C C G T A A C T G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GTCTAGTCAG
TWGTCTGV----
A C G T A C G T A C T G A C G T A G T C A C G T C G T A A C T G A C G T A G T C C G T A A C T G
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T

Mafb/MA0117.2/Jaspar

Match Rank:10
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GTCTAGTCAG------
----NGTCAGCANTTT
A C T G A C G T A G T C A C G T C G T A A C T G A C G T A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T C A T A C G A G C T G T A C C T G A C A T G T A G C C T G A G C A T C G A T G C A T G C A T