Information for 13-GAGTGCCATA (Motif 30)

A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C G T C G T A
Reverse Opposite:
A C G T C G T A A C G T A C T G A C T G A G T C C G T A A G T C A C G T A G T C
p-value:1e-3
log p-value:-7.675e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif13.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets7.0 +/- 0.0bp
Average Position of motif in Background95.0 +/- 66.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PKNOX1/MA0782.2/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GAGTGCCATA--
TTTGAGTGACAGCTA
A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C G T C G T A A C G T A C G T
C G A T G C A T C G A T T C A G C T G A A C T G C G A T A T C G C T G A G A T C C G T A A C T G T A G C A G C T C T G A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGCCATA
CTYRAGTGSY---
A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C G T C G T A
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGCCATA
TTGAGTGSTT--
A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C G T C G T A
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGCCATA
CTTGAGTGGCT--
A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C G T C G T A
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GAGTGCCATA
-CGTGCCAAG
A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C G T C G T A
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GAGTGCCATA-
-GGTGCCAAGT
A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C G T C G T A A C G T
A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GAGTGCCATA
BTBRAGTGSN---
A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C G T C G T A
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GAGTGCCATA
TTRAGTGSYK--
A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C G T C G T A
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T

PBX3/MA1114.1/Jaspar

Match Rank:9
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GAGTGCCATA---
GGGTGAGTGACAGGCGG
A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C G T C G T A A C G T A C G T A C G T
T A C G A C T G A C T G C G A T T C A G C G T A A C T G C A G T T A C G C T G A T A G C C T G A A C T G T A C G A T G C T C A G A T C G

NKX2-5/MA0063.2/Jaspar

Match Rank:10
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----GAGTGCCATA
NNTTGAGTGNN---
A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C G T C G T A
C G A T A G C T C G A T G C A T C T A G C G T A C T A G G A C T C T A G A C T G A G C T A C G T A C G T A C G T