Information for 8-AAGGCATTCACA (Motif 10)

C G T A C G T A A C T G A C T G A G T C C G T A A C G T A C G T A G T C C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T A C T G C G T A C G T A A C G T A C T G A G T C A G T C A C G T A C G T
p-value:1e-4
log p-value:-1.023e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets21.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0170.1_Sox17_2/Jaspar

Match Rank:1
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AAGGCATTCACA----
GACCACATTCATACAAT
A C G T C G T A C G T A A C T G A C T G A G T C C G T A A C G T A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

PB0178.1_Sox8_2/Jaspar

Match Rank:2
Score:0.58
Offset:3
Orientation:forward strand
Alignment:AAGGCATTCACA-----
---ACATTCATGACACG
C G T A C G T A A C T G A C T G A G T C C G T A A C G T A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

PH0137.1_Pitx1/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AAGGCATTCACA--
TTAGAGGGATTAACAAT
A C G T A C G T A C G T C G T A C G T A A C T G A C T G A G T C C G T A A C G T A C G T A G T C C G T A A G T C C G T A A C G T A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

PB0028.1_Hbp1_1/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AAGGCATTCACA--
NNCATTCATTCATNNN
A C G T A C G T C G T A C G T A A C T G A C T G A G T C C G T A A C G T A C G T A G T C C G T A A G T C C G T A A C G T A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

TBX21/MA0690.1/Jaspar

Match Rank:5
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:AAGGCATTCACA----
------TTCACACCTT
C G T A C G T A A C T G A C T G A G T C C G T A A C G T A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A G C T T G A C C T G A G T A C T C G A T G A C G A T C G A C T G A C T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:6
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:AAGGCATTCACA----
------TTMACACCTT
C G T A C G T A A C T G A C T G A G T C C G T A A C G T A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T

TBR1/MA0802.1/Jaspar

Match Rank:7
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:AAGGCATTCACA---
-----TTTCACACCT
C G T A C G T A A C T G A C T G A G T C C G T A A C G T A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C G A T G A C T T G A C C T G A T A G C T C G A T A G C G A T C G A C T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:8
Score:0.56
Offset:5
Orientation:forward strand
Alignment:AAGGCATTCACA---
-----ATTAACACCT
C G T A C G T A A C T G A C T G A G T C C G T A A C G T A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T

PH0121.1_Obox1/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AAGGCATTCACA--
TTAAGGGGATTAACTAC
A C G T A C G T A C G T C G T A C G T A A C T G A C T G A G T C C G T A A C G T A C G T A G T C C G T A A G T C C G T A A C G T A C G T
C A G T C G A T T C G A T C G A C T A G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C G T A G T A C C G A T G C T A A G T C

Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer

Match Rank:10
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:AAGGCATTCACA---
-----TTTCACACCT
C G T A C G T A A C T G A C T G A G T C C G T A A C G T A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T G A C T T A G C C G T A G A T C C G T A T G A C G A T C G A C T