Information for 5-CAGAGTATTTAT (Motif 5)

A G T C C G T A A C T G C G T A A C T G A C G T C G T A A C G T A C G T A C G T C G T A A C G T
Reverse Opposite:
C G T A A C G T C G T A C G T A C G T A A C G T C G T A A G T C A C G T A G T C A C G T A C T G
p-value:1e-4
log p-value:-1.043e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets68.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CAGAGTATTTAT
--GAATATTCAT
A G T C C G T A A C T G C G T A A C T G A C G T C G T A A C G T A C G T A C G T C G T A A C G T
A C G T A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T

FOXL1/MA0033.2/Jaspar

Match Rank:2
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:CAGAGTATTTAT
-----TGTTTAC
A G T C C G T A A C T G C G T A A C T G A C G T C G T A A C G T A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C A G T C T A G A C G T C A G T A C G T C T G A G A T C

MF0005.1_Forkhead_class/Jaspar

Match Rank:3
Score:0.61
Offset:5
Orientation:forward strand
Alignment:CAGAGTATTTAT--
-----TGTTTATTT
A G T C C G T A A C T G C G T A A C T G A C G T C G T A A C G T A C G T A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C T A G A G C T G A C T C A G T C T G A A G C T C A G T A G C T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CAGAGTATTTAT
--GHATATKCAT
A G T C C G T A A C T G C G T A A C T G A C G T C G T A A C G T A C G T A C G T C G T A A C G T
A C G T A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CAGAGTATTTAT----
-AAATGATTTATGGCT
A G T C C G T A A C T G C G T A A C T G A C G T C G T A A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C T G A C G T A C G T A C G A T C T A G C G T A C G A T C G A T C A G T T C G A A G C T C A T G C T A G A G T C G A C T

POL012.1_TATA-Box/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CAGAGTATTTAT--
NNNNNNCTTTTATAN
A C G T A G T C C G T A A C T G C G T A A C T G A C G T C G T A A C G T A C G T A C G T C G T A A C G T A C G T A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

TBP/MA0108.2/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CAGAGTATTTAT--
NNNNNNCTTTTATAN
A C G T A G T C C G T A A C T G C G T A A C T G A C G T C G T A A C G T A C G T A C G T C G T A A C G T A C G T A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:8
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CAGAGTATTTAT----
----DGWTTTATGRCN
A G T C C G T A A C T G C G T A A C T G A C G T C G T A A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:9
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CAGAGTATTTAT----
----NTGTTTAYATWW
A G T C C G T A A C T G C G T A A C T G A C G T C G T A A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A C G T C T A G A C G T A C G T A C G T C G T A A G C T T G C A G A C T C G T A C G T A

Foxq1/MA0040.1/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CAGAGTATTTAT-
--TATTGTTTATT
A G T C C G T A A C T G C G T A A C T G A C G T C G T A A C G T A C G T A C G T C G T A A C G T A C G T
A C G T A C G T G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T