Information for 1-TTTAATCCCG (Motif 1)

A C G T A C G T A C G T C G T A C G T A A C G T A G T C A G T C A G T C A C T G
Reverse Opposite:
A G T C A C T G A C T G A C T G C G T A A C G T A C G T C G T A C G T A C G T A
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets186.0 +/- 0.0bp
Average Position of motif in Background138.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0124.1_Obox5_1/Jaspar

Match Rank:1
Score:0.83
Offset:-4
Orientation:reverse strand
Alignment:----TTTAATCCCG---
NANANTTAATCCCNNNN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A G T C A G T C A G T C A C T G A C G T A C G T A C G T
C A T G C G T A C T G A C T G A C G A T G C A T C G A T C G T A C G T A C G A T G A T C A G T C A G T C A G C T A G T C G A C T C G T A

PITX2/MA1547.1/Jaspar

Match Rank:2
Score:0.81
Offset:1
Orientation:forward strand
Alignment:TTTAATCCCG
-ATAATCCC-
A C G T A C G T A C G T C G T A C G T A A C G T A G T C A G T C A G T C A C T G
A C G T G T C A C G A T C T G A C G T A A C G T A G T C A G T C T G A C A C G T

PH0137.1_Pitx1/Jaspar

Match Rank:3
Score:0.81
Offset:-3
Orientation:reverse strand
Alignment:---TTTAATCCCG----
NTTGTTAATCCCTCTNN
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A G T C A G T C A G T C A C T G A C G T A C G T A C G T A C G T
C G T A C A G T G A C T C A T G G A C T C G A T C G T A C G T A A C G T G A T C A G T C A G T C G A C T A G T C A G C T T G C A C T G A

PITX3/MA0714.1/Jaspar

Match Rank:4
Score:0.81
Offset:0
Orientation:forward strand
Alignment:TTTAATCCCG
CTTAATCCC-
A C G T A C G T A C G T C G T A C G T A A C G T A G T C A G T C A G T C A C T G
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T

PITX1/MA0682.2/Jaspar

Match Rank:5
Score:0.80
Offset:1
Orientation:forward strand
Alignment:TTTAATCCCG
-CTAATCCC-
A C G T A C G T A C G T C G T A C G T A A C G T A G T C A G T C A G T C A C T G
A C G T G A T C A C G T C G T A C G T A A C G T G T A C A G T C G T A C A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.80
Offset:2
Orientation:forward strand
Alignment:TTTAATCCCG
--TAATCCCN
A C G T A C G T A C G T C G T A C G T A A C G T A G T C A G T C A G T C A C T G
A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:7
Score:0.79
Offset:0
Orientation:forward strand
Alignment:TTTAATCCCG
NYTAATCCYB
A C G T A C G T A C G T C G T A C G T A A C G T A G T C A G T C A G T C A C T G
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

PH0130.1_Otx2/Jaspar

Match Rank:8
Score:0.79
Offset:-4
Orientation:reverse strand
Alignment:----TTTAATCCCG---
GANNATTAATCCCTNNN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A G T C A G T C A G T C A C T G A C G T A C G T A C G T
C A T G G T C A G A T C C T G A T C G A G A C T C G A T C G T A C G T A C A G T G A T C A G T C A G T C A G C T G C T A G A T C G T C A

PH0125.1_Obox5_2/Jaspar

Match Rank:9
Score:0.79
Offset:-4
Orientation:forward strand
Alignment:----TTTAATCCCG---
GATAATTAATCCCTCTT
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A G T C A G T C A G T C A C T G A C G T A C G T A C G T
A C T G C G T A A G C T C T G A C G T A G C A T C G A T C G T A C G T A C A G T G T A C A G T C A G T C A G C T A G T C G A C T A G C T

OTX2/MA0712.2/Jaspar

Match Rank:10
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-TTTAATCCCG-
NNCTAATCCCNN
A C G T A C G T A C G T A C G T C G T A C G T A A C G T A G T C A G T C A G T C A C T G A C G T
G C A T G C A T G A T C G C A T C G T A G T C A C A G T G A T C G A T C G A T C G C A T C G A T