Information for 2-CCGTGTTAAG (Motif 2)

A G T C A G T C A C T G A C G T A C T G A C G T A C G T C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T C G T A C G T A A G T C C G T A A G T C A C T G A C T G
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets135.0 +/- 0.0bp
Average Position of motif in Background61.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0184.1_Tbp_2/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCGTGTTAAG-----
CCGATTTAAGCGACC
A G T C A G T C A C T G A C G T A C T G A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
T G A C A T G C A T C G C G T A G A C T C G A T C G A T G T C A G C T A A T C G T A G C A C T G G C T A A C G T G T A C

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CCGTGTTAAG
AGGTGTTAAT
A G T C A G T C A C T G A C G T A C T G A C G T A C G T C G T A C G T A A C T G
C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCGTGTTAAG
AAGGTGTKAA-
A C G T A G T C A G T C A C T G A C G T A C T G A C G T A C G T C G T A C G T A A C T G
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T

TBX6/MA1567.1/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCGTGTTAAG
GAGGTGTGAA-
A C G T A G T C A G T C A C T G A C G T A C T G A C G T A C G T C G T A C G T A A C T G
C T A G C T G A T A C G T A C G G A C T C T A G G A C T A C T G C T G A C G T A A C G T

PB0109.1_Bbx_2/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCGTGTTAAG-----
NNNNCTGTTAACNNTNN
A C G T A C G T A G T C A G T C A C T G A C G T A C T G A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A G T C G A T C T G C A C G T A T A G C A G C T C A T G C A G T A G C T C T G A G T C A G A T C T C G A C T G A C G A T A G T C C T G A

TBX20/MA0689.1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCGTGTTAAG
TAGGTGTGAAG
A C G T A G T C A G T C A C T G A C G T A C T G A C G T A C G T C G T A C G T A A C T G
C G A T C T G A T C A G A C T G A C G T A C T G C A G T C A T G C G T A C G T A T C A G

TBX2/MA0688.1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCGTGTTAAG
AAGGTGTGAAA
A C G T A G T C A G T C A C T G A C G T A C T G A C G T A C G T C G T A C G T A A C T G
C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A

Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCGTGTTAAG-
-NBWGATAAGR
A G T C A G T C A C T G A C G T A C T G A C G T A C G T C G T A C G T A A C T G A C G T
A C G T T A C G A T G C G C T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CCGTGTTAAG--
--CAGATAAGGN
A G T C A G T C A C T G A C G T A C T G A C G T A C G T C G T A C G T A A C T G A C G T A C G T
A C G T A C G T T A G C G C T A A C T G C G T A A C G T C G T A C G T A T A C G T C A G T C G A

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CCGTGTTAAG--
--NAGATAAGNN
A G T C A G T C A C T G A C G T A C T G A C G T A C G T C G T A C G T A A C T G A C G T A C G T
A C G T A C G T T A C G G C T A A C T G C G T A A C G T C G T A C T G A T A C G T C A G T C G A