Information for 1-CTCATAAAGTAC (Motif 3)

A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G A C G T C G T A A G T C
Reverse Opposite:
A C T G A C G T C G T A A G T C A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C T G
p-value:1e-4
log p-value:-9.944e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets6.0 +/- 0.0bp
Average Position of motif in Background85.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CTCATAAAGTAC
AAAGCTCGTAAAATTT
A C G T A C G T A C G T A C G T A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G A C G T C G T A A G T C
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CTCATAAAGTAC
AAACCTCGTAAAATTT
A C G T A C G T A C G T A C G T A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G A C G T C G T A A G T C
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

HOXC13/MA0907.1/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTCATAAAGTAC
GCTCGTAAAAA--
A C G T A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G A C G T C G T A A G T C
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CTCATAAAGTAC
CCYMATAAAA---
A C G T A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G A C G T C G T A A G T C
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CTCATAAAGTAC
NGYCATAAAWCH-
A C G T A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G A C G T C G T A A G T C
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTCATAAAGTAC
CYHATAAAAN--
A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G A C G T C G T A A G T C
T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C A C G T A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTCATAAAGTAC
GTCGTAAAAT--
A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G A C G T C G T A A G T C
T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T A C G T A C G T

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CTCATAAAGTAC
NCYAATAAAA---
A C G T A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G A C G T C G T A A G T C
C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTCATAAAGTAC
VGCCATAAAA---
A C G T A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G A C G T C G T A A G T C
T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A A C G T A C G T A C G T

PH0112.1_Nkx2-3/Jaspar

Match Rank:10
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CTCATAAAGTAC------
--CNTTAAGTACTTAANG
A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G