Information for 2-CAGGACAAGYAA (Motif 2)

A T G C C G T A C T A G A C T G C G T A A T G C C T G A G C T A C T A G A G T C G T C A T C G A
Reverse Opposite:
A C G T A C G T T C A G A G T C C A G T A G C T T A C G G A C T G T A C A G T C A C G T A T C G
p-value:1e-6
log p-value:-1.391e+01
Information Content per bp:1.660
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif36.36%
Number of Background Sequences with motif574.8
Percentage of Background Sequences with motif0.73%
Average Position of motif in Targets109.0 +/- 28.7bp
Average Position of motif in Background97.0 +/- 67.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CAGGACAAGYAA
TRAGGTCA-----
A C G T A T G C C G T A C T A G A C T G C G T A A T G C C T G A G C T A C T A G A G T C G T C A T C G A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T

RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CAGGACAAGYAA
CAAAGKTCAA----
A C G T A C G T A T G C C G T A C T A G A C T G C G T A A T G C C T G A G C T A C T A G A G T C G T C A T C G A
G A T C G T C A T C G A T C G A C T A G C A T G A G C T G T A C T C G A T C G A A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CAGGACAAGYAA
AAGGTCAC----
A T G C C G T A C T A G A C T G C G T A A T G C C T G A G C T A C T A G A G T C G T C A T C G A
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CAGGACAAGYAA
-AGGTCA-----
A T G C C G T A C T A G A C T G C G T A A T G C C T G A G C T A C T A G A G T C G T C A T C G A
A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T

ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer

Match Rank:5
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CAGGACAAGYAA
NBYCAAGGTCAC----
A C G T A C G T A C G T A C G T A T G C C G T A C T A G A C T G C G T A A T G C C T G A G C T A C T A G A G T C G T C A T C G A
A T C G A T G C A G C T T A G C T C G A C T G A C T A G A C T G C A G T A T G C C T G A G T A C A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CAGGACAAGYAA-
-AGGTCAAGGTCA
A T G C C G T A C T A G A C T G C G T A A T G C C T G A G C T A C T A G A G T C G T C A T C G A A C G T
A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CAGGACAAGYAA
NACAGGAAAT----
A C G T A C G T A T G C C G T A C T A G A C T G C G T A A T G C C T G A G C T A C T A G A G T C G T C A T C G A
T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CAGGACAAGYAA
ATCAAGGTCA-----
A C G T A C G T A C G T A T G C C G T A C T A G A C T G C G T A A T G C C T G A G C T A C T A G A G T C G T C A T C G A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CAGGACAAGYAA
CAAGGHCANV---
A C G T A T G C C G T A C T A G A C T G C G T A A T G C C T G A G C T A C T A G A G T C G T C A T C G A
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T A C G T

NR2F2/MA1111.1/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CAGGACAAGYAA
CAAAGGTCAAA---
A C G T A C G T A T G C C G T A C T A G A C T G C G T A A T G C C T G A G C T A C T A G A G T C G T C A T C G A
G A T C G T C A C G T A C T G A C A T G C T A G A C G T G A T C C T G A C T G A C T G A A C G T A C G T A C G T