Information for 7-AGGGTTATTAGA (Motif 7)

C G T A A C T G A C T G A C T G A C G T A C G T C G T A A C G T A C G T C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T C G T A C G T A A C G T C G T A C G T A A G T C A G T C A G T C A C G T
p-value:1e-4
log p-value:-1.122e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets106.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD3/MA0912.2/Jaspar

Match Rank:1
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:AGGGTTATTAGA
---GTAATTAG-
C G T A A C T G A C T G A C T G A C G T A C G T C G T A A C G T A C G T C G T A A C T G C G T A
A C G T A C G T A C G T T A C G A G C T G T C A C G T A A C G T A C G T C T G A T C A G A C G T

PH0049.1_Hoxa2/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGGGTTATTAGA----
AAGGTAATTAGCTCAT
C G T A A C T G A C T G A C T G A C G T A C G T C G T A A C G T A C G T C G T A A C T G C G T A A C G T A C G T A C G T A C G T
C T G A T G C A C T A G A T C G G A C T T G C A G T C A A C G T A C G T C T G A T A C G G A T C G A C T G T A C C G T A C G A T

EVX2/MA0888.1/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AGGGTTATTAGA
--GGTAATTAGC
C G T A A C T G A C T G A C T G A C G T A C G T C G T A A C G T A C G T C G T A A C T G C G T A
A C G T A C G T T A C G T A C G G A C T T G C A T C G A A C G T A G C T C T G A T A C G A T G C

HOXB7/MA1501.1/Jaspar

Match Rank:4
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AGGGTTATTAGA
--GGTAATTAAC
C G T A A C T G A C T G A C T G A C G T A C G T C G T A A C G T A C G T C G T A A C T G C G T A
A C G T A C G T T C A G A C T G A G C T G T C A G T C A A C G T G C A T C T G A T C G A T A G C

PH0052.1_Hoxa5/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGGGTTATTAGA----
ACGGTAATTAGCTCAG
C G T A A C T G A C T G A C T G A C G T A C G T C G T A A C G T A C G T C G T A A C T G C G T A A C G T A C G T A C G T A C G T
T C G A T G A C C T A G A C T G G A C T G T C A G T C A A C G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A C T A G

VAX2/MA0723.1/Jaspar

Match Rank:6
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:AGGGTTATTAGA
---NTAATTAG-
C G T A A C T G A C T G A C T G A C G T A C G T C G T A A C G T A C G T C G T A A C T G C G T A
A C G T A C G T A C G T T C A G G A C T G T C A G C T A C G A T C A G T C T G A T C A G A C G T

EVX1/MA0887.1/Jaspar

Match Rank:7
Score:0.62
Offset:2
Orientation:forward strand
Alignment:AGGGTTATTAGA
--GGTAATTAGC
C G T A A C T G A C T G A C T G A C G T A C G T C G T A A C G T A C G T C G T A A C T G C G T A
A C G T A C G T T C A G T A C G G A C T T C G A T C G A A C G T G A C T C T G A A T C G T A G C

HOXA2/MA0900.2/Jaspar

Match Rank:8
Score:0.62
Offset:3
Orientation:forward strand
Alignment:AGGGTTATTAGA
---GTAATTAG-
C G T A A C T G A C T G A C T G A C G T A C G T C G T A A C G T A C G T C G T A A C T G C G T A
A C G T A C G T A C G T T A C G A G C T T G C A C G T A A C G T A C G T C T G A T A C G A C G T

VAX1/MA0722.1/Jaspar

Match Rank:9
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:AGGGTTATTAGA
---NTAATTAG-
C G T A A C T G A C T G A C T G A C G T A C G T C G T A A C G T A C G T C G T A A C T G C G T A
A C G T A C G T A C G T C T A G G A C T G T C A G C T A C A G T C A G T C T G A T C A G A C G T

HOXA6/MA1497.1/Jaspar

Match Rank:10
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AGGGTTATTAGA
--GGTAATTAAC
C G T A A C T G A C T G A C T G A C G T A C G T C G T A A C G T A C G T C G T A A C T G C G T A
A C G T A C G T A C T G A T C G A G C T G T C A T C G A A C G T C G A T C G T A C T G A A T G C