Information for 13-CACAAATATTAA (Motif 13)

A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C G T A C G T A C T G A C G T A C T G
p-value:1e-4
log p-value:-9.834e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif5.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets64.0 +/- 0.0bp
Average Position of motif in Background105.9 +/- 65.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.68
Offset:2
Orientation:forward strand
Alignment:CACAAATATTAA----
--CTAATATTGCTAAA
A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.68
Offset:2
Orientation:forward strand
Alignment:CACAAATATTAA----
--CTAATATTGCTAAA
A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

Arid3b/MA0601.1/Jaspar

Match Rank:3
Score:0.63
Offset:5
Orientation:forward strand
Alignment:CACAAATATTAA----
-----ATATTAATTAA
A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

Arid3a/MA0151.1/Jaspar

Match Rank:4
Score:0.59
Offset:7
Orientation:forward strand
Alignment:CACAAATATTAA-
-------ATTAAA
A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CACAAATATTAA-
CTCATGAATATTCAT
A C G T A C G T A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T C G T A C G T A A C G T
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

MF0010.1_Homeobox_class/Jaspar

Match Rank:6
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CACAAATATTAA
---AATTATT--
A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T C G T A C G T A
A C G T A C G T A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CACAAATATTAA-
---GAATATTCAT
A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T C G T A C G T A A C G T
A C G T A C G T A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CACAAATATTAA
GGTTAAACATTAA
A C G T A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T C G T A C G T A
C T A G C T A G G C A T C G A T C T G A G T C A G C T A A T G C C G T A C A G T G A C T C G T A T G C A

PB0148.1_Mtf1_2/Jaspar

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CACAAATATTAA-----
---AAATAAGAAAAAAC
A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A C G T A G C T A C A G T G C T A G C T A C A T G G T C A G C T A G C T A G C T A T G C A C G T A T G A C

PB0093.1_Zfp105_1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CACAAATATTAA---
AACAAACAACAAGAG
A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T
G C T A C G T A G A T C G T C A C G T A G C T A G A T C C T G A C G T A G T A C C T G A G C T A C A T G C G T A C T A G