Information for 21-GCTAGCAAACCA (Motif 21)

A C T G A G T C A C G T C G T A A C T G A G T C C G T A C G T A C G T A A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G A C G T A C G T A C G T A C T G A G T C A C G T C G T A A C T G A G T C
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets102.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0168.1_Hnf1b/Jaspar

Match Rank:1
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GCTAGCAAACCA--
ANNNCTAGTTAACNGNN
A C G T A C G T A C G T A C T G A G T C A C G T C G T A A C T G A G T C C G T A C G T A C G T A A G T C A G T C C G T A A C G T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:2
Score:0.57
Offset:6
Orientation:forward strand
Alignment:GCTAGCAAACCA----
------AAACCACANN
A C T G A G T C A C G T C G T A A C T G A G T C C G T A C G T A C G T A A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:3
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GCTAGCAAACCA
KGTTGCTAGGMAACA-
A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A A C T G A G T C C G T A C G T A C G T A A G T C A G T C C G T A
C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:4
Score:0.56
Offset:5
Orientation:forward strand
Alignment:GCTAGCAAACCA---
-----NAAACCACAG
A C T G A G T C A C G T C G T A A C T G A G T C C G T A C G T A C G T A A G T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCTAGCAAACCA
VGCTGGCA-----
A C G T A C T G A G T C A C G T C G T A A C T G A G T C C G T A C G T A C G T A A G T C A G T C C G T A
T A G C T A C G A T G C C A G T T C A G T A C G G A T C C T G A A C G T A C G T A C G T A C G T A C G T

FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GCTAGCAAACCA
GCTAARTAAACA
A C T G A G T C A C G T C G T A A C T G A G T C C G T A C G T A C G T A A G T C A G T C C G T A
A T C G G A T C G C A T T C G A G C T A T C G A G C A T G T C A C G T A G T C A G A T C G C T A

FOXN3/MA1489.1/Jaspar

Match Rank:7
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GCTAGCAAACCA
----GTAAACAA
A C T G A G T C A C G T C G T A A C T G A G T C C G T A C G T A C G T A A G T C A G T C C G T A
A C G T A C G T A C G T A C G T A C T G A C G T C G T A C G T A C G T A A G T C C G T A C G T A

PB0121.1_Foxj3_2/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCTAGCAAACCA-----
AACACCAAAACAAAGGA
A C T G A G T C A C G T C G T A A C T G A G T C C G T A C G T A C G T A A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

PB0208.1_Zscan4_2/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCTAGCAAACCA----
CGAAGCACACAAAATA
A C T G A G T C A C G T C G T A A C T G A G T C C G T A C G T A C G T A A G T C A G T C C G T A A C G T A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PB0054.1_Rfx3_1/Jaspar

Match Rank:10
Score:0.53
Offset:-7
Orientation:forward strand
Alignment:-------GCTAGCAAACCA----
TGTGACCCTTAGCAACCGATTAA
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A A C T G A G T C C G T A C G T A C G T A A G T C A G T C C G T A A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A