Information for 3-AGTAGTATGA (Motif 13)

C G T A A C T G A C G T C G T A A C T G A C G T C G T A A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A A C G T C G T A A G T C A C G T C G T A A G T C A C G T
p-value:1e-4
log p-value:-9.833e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif5.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets78.0 +/- 0.0bp
Average Position of motif in Background122.2 +/- 64.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:1
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGTAGTATGA---
-GWAAYHTGABMC
C G T A A C T G A C G T C G T A A C T G A C G T C G T A A C G T A C T G C G T A A C G T A C G T A C G T
A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

PB0181.1_Spdef_2/Jaspar

Match Rank:2
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGTAGTATGA----
CTACTAGGATGTNNTN
A C G T A C G T C G T A A C T G A C G T C G T A A C T G A C G T C G T A A C G T A C T G C G T A A C G T A C G T A C G T A C G T
A G T C G C A T C G T A T G A C C G A T T C G A T A C G C A T G C G T A G A C T C T A G G A C T C G A T T C G A G C A T G A T C

PB0154.1_Osr1_2/Jaspar

Match Rank:3
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------AGTAGTATGA
NNNTTAGGTAGCNTNT
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A A C T G A C G T C G T A A C G T A C T G C G T A
A C T G C A G T G C T A C A G T A G C T C G T A C T A G A C T G C G A T C T G A C T A G A G T C C T G A C G A T C T A G G A C T

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:4
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------AGTAGTATGA-
ACTCCAAGTACTTGGAA
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A A C T G A C G T C G T A A C G T A C T G C G T A A C G T
T C G A G T A C C G A T A T G C T A G C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A C T G T C A G T G C A G T C A

ZKSCAN1/MA1585.1/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AGTAGTATGA-
-ATAGTAGGTG
C G T A A C T G A C G T C G T A A C T G A C G T C G T A A C G T A C T G C G T A A C G T
A C G T T C G A A G C T T G C A C T A G A C G T G T C A A T C G C A T G A G C T T A C G

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AGTAGTATGA---
-GTGGCGTGACNG
C G T A A C T G A C G T C G T A A C T G A C G T C G T A A C G T A C T G C G T A A C G T A C G T A C G T
A C G T T C A G A C G T C A T G A C T G A T G C A T C G A C G T A T C G C T G A A G T C G A T C C A T G

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AGTAGTATGA-
-ATGGGGTGAT
C G T A A C T G A C G T C G T A A C T G A C G T C G T A A C G T A C T G C G T A A C G T
A C G T T C G A A G C T C A T G A C T G A T C G T A C G G A C T A T C G C G T A A G C T

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:8
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--AGTAGTATGA--------
GAAGTANCACGAATNMRAGT
A C G T A C G T C G T A A C T G A C G T C G T A A C T G A C G T C G T A A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T

PB0050.1_Osr1_1/Jaspar

Match Rank:9
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------AGTAGTATGA
ATTTACAGTAGCAAAA
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A A C T G A C G T C G T A A C G T A C T G C G T A
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

PB0155.1_Osr2_2/Jaspar

Match Rank:10
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------AGTAGTATGA
NNTGTAGGTAGCANNT
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A A C T G A C G T C G T A A C G T A C T G C G T A
A C T G C T A G C G A T C A T G A G C T C G T A C T A G A C T G C G A T C T G A T A C G A G T C C T G A C T G A C T A G G A C T