Information for 9-CTGCCAATTGAA (Motif 10)

A G T C A C G T A C T G A G T C A G T C C G T A C G T A A C G T A C G T A C T G C G T A C G T A
Reverse Opposite:
A C G T A C G T A G T C C G T A C G T A A C G T A C G T A C T G A C T G A G T C C G T A A C T G
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets111.0 +/- 0.0bp
Average Position of motif in Background153.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CTGCCAATTGAA
GGTGCCAAGT---
A C G T A G T C A C G T A C T G A G T C A G T C C G T A C G T A A C G T A C G T A C T G C G T A C G T A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CTGCCAATTGAA
CGTGCCAAG----
A C G T A G T C A C G T A C T G A G T C A G T C C G T A C G T A A C G T A C G T A C T G C G T A C G T A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

NFIC/MA0161.2/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCAATTGAA
NNTGCCAAGNN--
A C G T A G T C A C G T A C T G A G T C A G T C C G T A C G T A A C G T A C G T A C T G C G T A C G T A
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A A C G T A C G T

PH0171.1_Nkx2-1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTGCCAATTGAA---
TAAGCCACTTGAAATT
A C G T A G T C A C G T A C T G A G T C A G T C C G T A C G T A A C G T A C G T A C T G C G T A C G T A A C G T A C G T A C G T
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTGCCAATTGAA
TTGCCAAG----
A G T C A C G T A C T G A G T C A G T C C G T A C G T A A C G T A C G T A C T G C G T A C G T A
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T

PB0068.1_Sox1_1/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CTGCCAATTGAA-----
-AATCAATTCAATAATT
A G T C A C G T A C T G A G T C A G T C C G T A C G T A A C G T A C G T A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

PH0114.1_Nkx2-5/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTGCCAATTGAA---
TAAGCCACTTGAATTT
A C G T A G T C A C G T A C T G A G T C A G T C C G T A C G T A A C G T A C G T A C T G C G T A C G T A A C G T A C G T A C G T
G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T

PH0111.1_Nkx2-2/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTGCCAATTGAA----
ATAACCACTTGAAAATT
A C G T A G T C A C G T A C T G A G T C A G T C C G T A C G T A A C G T A C G T A C T G C G T A C G T A A C G T A C G T A C G T A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

NKX2-3/MA0672.1/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CTGCCAATTGAA
--ACCACTTGAA
A G T C A C G T A C T G A G T C A G T C C G T A C G T A A C G T A C G T A C T G C G T A C G T A
A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

LHX2/MA0700.2/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CTGCCAATTGAA
-AACCAATTAAT
A G T C A C G T A C T G A G T C A G T C C G T A C G T A A C G T A C G T A C T G C G T A C G T A
A C G T C G T A C G T A A T G C G A T C G C T A G C T A C G A T C G A T G C T A C G T A G C A T