Information for 11-GAAAAATTTAGG (Motif 10)

A C T G C G T A C G T A C G T A C G T A C G T A A C G T A C G T A C G T C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A G T C
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets187.0 +/- 0.0bp
Average Position of motif in Background164.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0173.1_Sox21_2/Jaspar

Match Rank:1
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----GAAAAATTTAGG
NNNNNGAACAATTGANN
A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G T A C G T A C G T A A C G T A C G T A C G T C G T A A C T G A C T G
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

PB0165.1_Sox11_2/Jaspar

Match Rank:2
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GAAAAATTTAGG
NNCNNAACAATTNT--
A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G T A C G T A C G T A A C G T A C G T A C G T C G T A A C T G A C T G
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T A C G T A C G T

POU4F1/MA0790.1/Jaspar

Match Rank:3
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GAAAAATTTAGG
ATGAATAATTAATG
A C G T A C G T A C T G C G T A C G T A C G T A C G T A C G T A A C G T A C G T A C G T C G T A A C T G A C T G
T C G A G A C T C T A G G T C A G C T A C G A T C G T A C G T A C G A T C G A T C G T A T C G A G A C T C A T G

PB0072.1_Sox5_1/Jaspar

Match Rank:4
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GAAAAATTTAGG
TTTAGAACAATAAAAT
A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G T A C G T A C G T A A C G T A C G T A C G T C G T A A C T G A C T G
C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T

MF0010.1_Homeobox_class/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GAAAAATTTAGG
-AATAATT----
A C T G C G T A C G T A C G T A C G T A C G T A A C G T A C G T A C G T C G T A A C T G A C T G
A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T A C G T A C G T A C G T A C G T

PB0063.1_Sox13_1/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GAAAAATTTAGG
TTAAGAACAATAAATT
A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G T A C G T A C G T A A C G T A C G T A C G T C G T A A C T G A C T G
C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T

PB0175.1_Sox4_2/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GAAAAATTTAGG-
TNCNNAACAATTTTTNC
A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G T A C G T A C G T A A C G T A C G T A C G T C G T A A C T G A C T G A C G T
G A C T G A C T G A T C A T G C G A C T C T G A C G T A A G T C C G T A C T G A G A C T G A C T G A C T G A C T C G A T A G T C A T G C

NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:8
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----GAAAAATTTAGG---
NANTGGAAAAANTGAGTCAN
A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G T A C G T A C G T A A C G T A C G T A C G T C G T A A C T G A C T G A C G T A C G T A C G T
T A C G C T G A T C G A C G A T C T A G C T A G T C G A C T G A T C G A T C G A C G T A T C G A G C A T C A T G C G T A T A C G G C A T T G A C C G T A A G C T

POU4F3/MA0791.1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GAAAAATTTAGG--
ATGCATAATTAATGAG
A C G T A C G T A C T G C G T A C G T A C G T A C G T A C G T A A C G T A C G T A C G T C G T A A C T G A C T G A C G T A C G T
C T G A A G C T C A T G G T A C G C T A C G A T C G T A C G T A C G A T C G A T C G T A C T G A G A C T C A T G G T C A T C A G

PB0074.1_Sox8_1/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GAAAAATTTAGG-
TNNAGAACAATANATNN
A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G T A C G T A C G T A A C G T A C G T A C G T C G T A A C T G A C T G A C G T
G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C