Information for 9-CAACGTGATA (Motif 27)

A G T C C G T A C G T A A G T C A C T G A C G T A C T G C G T A A C G T C G T A
Reverse Opposite:
A C G T C G T A A C G T A G T C C G T A A G T C A C T G A C G T A C G T A C T G
p-value:1e-3
log p-value:-8.574e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets157.0 +/- 0.0bp
Average Position of motif in Background44.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SIX1/MA1118.1/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CAACGTGATA
GTAACCTGATA
A C G T A G T C C G T A C G T A A G T C A C T G A C G T A C T G C G T A A C G T C G T A
C A T G C G A T G C T A C G T A G A T C G T A C G C A T C T A G C G T A A C G T G T C A

NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CAACGTGATA
KCCACGTGAC-
A C G T A G T C C G T A C G T A A G T C A C T G A C G T A C T G C G T A A C G T C G T A
A C T G T G A C G T A C C G T A A G T C T A C G A C G T A C T G G T C A A G T C A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CAACGTGATA
GGGTACGTGC--
A C G T A C G T A G T C C G T A C G T A A G T C A C T G A C G T A C T G C G T A A C G T C G T A
C T A G A T C G T C A G C A G T C T G A A T G C A C T G A G C T A C T G G T A C A C G T A C G T

Arnt/MA0004.1/Jaspar

Match Rank:4
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CAACGTGATA
-CACGTG---
A G T C C G T A C G T A A G T C A C T G A C G T A C T G C G T A A C G T C G T A
A C G T G T A C C T G A A G T C A C T G A C G T A C T G A C G T A C G T A C G T

TFE3/MA0831.2/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CAACGTGATA
-CACGTGAC-
A G T C C G T A C G T A A G T C A C T G A C G T A C T G C G T A A C G T C G T A
A C G T A G T C C G T A A G T C T C A G A C G T A C T G T G C A A G T C A C G T

MLX/MA0663.1/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CAACGTGATA
ATCACGTGAT-
A C G T A G T C C G T A C G T A A G T C A C T G A C G T A C T G C G T A A C G T C G T A
C T G A A C G T A G T C C T G A A G T C C A T G C G A T C A T G C T G A G A C T A C G T

MAX::MYC/MA0059.1/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CAACGTGATA
ACCACGTGCTC
A C G T A G T C C G T A C G T A A G T C A C T G A C G T A C T G C G T A A C G T C G T A
C T G A A G T C A G T C C T G A A G T C C T A G A C G T A C T G A T C G A G C T G A T C

c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CAACGTGATA
NCCACGTG---
A C G T A G T C C G T A C G T A A G T C A C T G A C G T A C T G C G T A A C G T C G T A
T C G A T A G C T G A C C T G A A G T C A C T G G A C T C A T G A C G T A C G T A C G T

MLXIPL/MA0664.1/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CAACGTGATA
ATCACGTGAT-
A C G T A G T C C G T A C G T A A G T C A C T G A C G T A C T G C G T A A C G T C G T A
C T G A C G A T A G T C G T C A A G T C A T C G G C A T A T C G G T C A G A C T A C G T

PB0105.1_Arid3a_2/Jaspar

Match Rank:10
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CAACGTGATA-----
NNATNTGATANNNNN
A G T C C G T A C G T A A G T C A C T G A C G T A C T G C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T
G T C A C T G A G C T A A G C T G C A T G A C T A T C G T C G A A G C T T C G A A G T C A T C G A C T G C A T G C A G T