Information for 6-ATCTTAGGTC (Motif 24)

C G T A A C G T A G T C A C G T A C G T C G T A A C T G A C T G A C G T A G T C
Reverse Opposite:
A C T G C G T A A G T C A G T C A C G T C G T A C G T A A C T G C G T A A C G T
p-value:1e-3
log p-value:-8.236e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif12.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets192.0 +/- 0.0bp
Average Position of motif in Background70.2 +/- 60.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.61
Offset:5
Orientation:forward strand
Alignment:ATCTTAGGTC-
-----AGGTCA
C G T A A C G T A G T C A C G T A C G T C G T A A C T G A C T G A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.61
Offset:3
Orientation:forward strand
Alignment:ATCTTAGGTC-
---TRAGGTCA
C G T A A C G T A G T C A C G T A C G T C G T A A C T G A C T G A C G T A G T C A C G T
A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:3
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----ATCTTAGGTC-
GGTCANYTGAGGWCA
A C G T A C G T A C G T A C G T C G T A A C G T A G T C A C G T A C G T C G T A A C T G A C T G A C G T A G T C A C G T
C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:ATCTTAGGTC-----
AAWCTAGGTCARDNN
C G T A A C G T A G T C A C G T A C G T C G T A A C T G A C T G A C G T A G T C A C G T A C G T A C G T A C G T A C G T
C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A

NR2C2(var.2)/MA1536.1/Jaspar

Match Rank:5
Score:0.58
Offset:4
Orientation:forward strand
Alignment:ATCTTAGGTC--
----GAGGTCAT
C G T A A C G T A G T C A C G T A C G T C G T A A C T G A C T G A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T T C A G T C G A A C T G A C T G A C G T A G T C C T G A G C A T

EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-ATCTTAGGTC-
NRBCARRGGTCA
A C G T C G T A A C G T A G T C A C G T A C G T C G T A A C T G A C T G A C G T A G T C A C G T
T C A G T C A G A C G T G T A C G C T A T C A G C T G A A C T G A C T G A G C T A G T C C G T A

ZKSCAN1/MA1585.1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:ATCTTAGGTC
ATAGTAGGTG
C G T A A C G T A G T C A C G T A C G T C G T A A C T G A C T G A C G T A G T C
T C G A A G C T T G C A C T A G A C G T G T C A A T C G C A T G A G C T T A C G

NR2F2/MA1111.1/Jaspar

Match Rank:8
Score:0.58
Offset:2
Orientation:forward strand
Alignment:ATCTTAGGTC---
--CAAAGGTCAAA
C G T A A C G T A G T C A C G T A C G T C G T A A C T G A C T G A C G T A G T C A C G T A C G T A C G T
A C G T A C G T G A T C G T C A C G T A C T G A C A T G C T A G A C G T G A T C C T G A C T G A C T G A

RORA(var.2)/MA0072.1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--ATCTTAGGTC--
TATAAGTAGGTCAA
A C G T A C G T C G T A A C G T A G T C A C G T A C G T C G T A A C T G A C T G A C G T A G T C A C G T A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

NR2C1/MA1535.1/Jaspar

Match Rank:10
Score:0.57
Offset:3
Orientation:forward strand
Alignment:ATCTTAGGTC--
---CGAGGTCAC
C G T A A C G T A G T C A C G T A C G T C G T A A C T G A C T G A C G T A G T C A C G T A C G T
A C G T A C G T A C G T G T A C C T A G T C G A A C T G A C T G A C G T A T G C C T G A G A T C