Information for 19-CCCTGAATGGCT (Motif 20)

A G T C A G T C A G T C A C G T A C T G C G T A C G T A A C G T A C T G A C T G A G T C A C G T
Reverse Opposite:
C G T A A C T G A G T C A G T C C G T A A C G T A C G T A G T C C G T A A C T G A C T G A C T G
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets170.0 +/- 0.0bp
Average Position of motif in Background147.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CCCTGAATGGCT---
---TGATTGGCTANN
A G T C A G T C A G T C A C G T A C T G C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

NFYA/MA0060.3/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CCCTGAATGGCT
-NCTGATTGGNN
A G T C A G T C A G T C A C G T A C T G C G T A C G T A A C G T A C T G A C T G A G T C A C G T
A C G T A C G T A T G C A G C T A T C G C T G A A G C T C G A T C T A G T C A G G A C T A G C T

NFYC/MA1644.1/Jaspar

Match Rank:3
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CCCTGAATGGCT
-NCTGATTGGNN
A G T C A G T C A G T C A C G T A C T G C G T A C G T A A C G T A C T G A C T G A G T C A C G T
A C G T A C G T A T G C A G C T A T C G C T G A A G C T C G A T C A T G T C A G G A T C A G C T

NFY(CCAAT)/Promoter/Homer

Match Rank:4
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CCCTGAATGGCT
--CCGATTGGCT
A G T C A G T C A G T C A C G T A C T G C G T A C G T A A C G T A C T G A C T G A G T C A C G T
A C G T A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CCCTGAATGGCT
-CTTGAGTGGCT
A G T C A G T C A G T C A C G T A C T G C G T A C G T A A C G T A C T G A C T G A G T C A C G T
A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CCCTGAATGGCT
--GTTAATGGCC
A G T C A G T C A G T C A C G T A C T G C G T A C G T A A C G T A C T G A C T G A G T C A C G T
A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

PB0178.1_Sox8_2/Jaspar

Match Rank:7
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CCCTGAATGGCT
NNTNTCATGAATGT--
A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C G T A C T G C G T A C G T A A C G T A C T G A C T G A G T C A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCCTGAATGGCT---
ACTATGAATGAATGAT
A C G T A G T C A G T C A G T C A C G T A C T G C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

ZNF16/MA1654.1/Jaspar

Match Rank:9
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CCCTGAATGGCT-------
AAAACCTTCCATGGCTCCCTATT
A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C G T A C T G C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T C G A T C G A T G C A T C G A G A T C G A T C G A C T A G C T A G T C G T A C C T G A A C G T C T A G C T A G G A T C A G C T A T G C G T A C G A T C G A C T T G C A A G C T A C G T

Hmx1/MA0896.1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CCCTGAATGGCT---
ANNCATTAATTGCTNGN
A C G T A C G T A G T C A G T C A G T C A C G T A C T G C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T