Information for 4-GCATGCATATGT (Motif 4)

A C T G A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C T G A C G T
Reverse Opposite:
C G T A A G T C C G T A A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C T G A G T C
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.75
Offset:2
Orientation:forward strand
Alignment:GCATGCATATGT
--ATGMATATDC
A C T G A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C T G A C G T
A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

Bhlha15/MA0607.1/Jaspar

Match Rank:2
Score:0.73
Offset:4
Orientation:forward strand
Alignment:GCATGCATATGT
----CCATATGT
A C T G A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C T G A C G T
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C G T G T C A A C G T A C T G A G C T

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:3
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GCATGCATATGT----
-YATGCATATRCATRT
A C T G A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T

Twist2/MA0633.1/Jaspar

Match Rank:4
Score:0.69
Offset:3
Orientation:forward strand
Alignment:GCATGCATATGT-
---ACCATATGTT
A C T G A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C T G A C G T A C G T
A C G T A C G T A C G T C T G A G T A C A G T C C G T A A G C T C T G A A C G T A C T G A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GCATGCATATGT
--ATGAATATTC
A C T G A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C T G A C G T
A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

POU2F2/MA0507.1/Jaspar

Match Rank:6
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GCATGCATATGT-
ATATGCAAATNNN
A C T G A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C T G A C G T A C G T
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Atoh1/MA0461.2/Jaspar

Match Rank:7
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:GCATGCATATGT-
---ANCATATGTT
A C T G A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C T G A C G T A C G T
A C G T A C G T A C G T C T G A T G C A G T A C G C T A A C G T G T C A A G C T A C T G A C G T A G C T

NEUROG1/MA0623.2/Jaspar

Match Rank:8
Score:0.66
Offset:3
Orientation:forward strand
Alignment:GCATGCATATGT-
---GACATATGTC
A C T G A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C T G A C G T A C G T
A C G T A C G T A C G T T C A G T G C A A T G C C T G A G A C T C T G A A G C T A C T G A C G T A G T C

NEUROG2/MA0669.1/Jaspar

Match Rank:9
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GCATGCATATGT-
---GACATATGTT
A C T G A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C T G A C G T A C G T
A C G T A C G T A C G T C T A G T C G A A G T C C G T A A C G T T G C A A G C T C T A G A C G T A G C T

BHLHE22/MA0818.1/Jaspar

Match Rank:10
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GCATGCATATGT-
---ANCATATGGT
A C T G A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C T G A C G T A C G T
A C G T A C G T A C G T C T G A T C G A T G A C C T G A A C G T C T G A G A C T A C T G A C T G A G C T