Information for 7-TCTAATGAATAC (Motif 9)

A C G T A G T C A C G T C G T A C G T A A C G T A C T G C G T A C G T A A C G T C G T A A G T C
Reverse Opposite:
A C T G A C G T C G T A A C G T A C G T A G T C C G T A A C G T A C G T C G T A A C T G C G T A
p-value:1e-4
log p-value:-1.121e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets94.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TCTAATGAATAC
NNTNTCATGAATGT
A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C T G C G T A C G T A A C G T C G T A A G T C
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

HOXB4/MA1499.1/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TCTAATGAATAC
-NTAATGAT---
A C G T A G T C A C G T C G T A C G T A A C G T A C T G C G T A C G T A A C G T C G T A A G T C
A C G T A G T C A G C T G T C A C G T A A G C T A C T G C T G A A G C T A C G T A C G T A C G T

HOXC4/MA1504.1/Jaspar

Match Rank:3
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TCTAATGAATAC
-NTAATGAN---
A C G T A G T C A C G T C G T A C G T A A C G T A C T G C G T A C G T A A C G T C G T A A G T C
A C G T A G C T A G C T C G T A C G T A A G C T A C T G C T G A A G T C A C G T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.65
Offset:4
Orientation:forward strand
Alignment:TCTAATGAATAC--
----ATGAATATTC
A C G T A G T C A C G T C G T A C G T A A C G T A C T G C G T A C G T A A C G T C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

HOXD4/MA1507.1/Jaspar

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TCTAATGAATAC
-NTAATGAN---
A C G T A G T C A C G T C G T A C G T A A C G T A C T G C G T A C G T A A C G T C G T A A G T C
A C G T G A T C A G C T C G T A C G T A A G C T A C T G C T G A A G C T A C G T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.65
Offset:4
Orientation:forward strand
Alignment:TCTAATGAATAC--
----ATGMATATDC
A C G T A G T C A C G T C G T A C G T A A C G T A C T G C G T A C G T A A C G T C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

Isl1/MA1608.1/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TCTAATGAATAC
NNCTAATGGNN--
A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C T G C G T A C G T A A C G T C G T A A G T C
A C G T T C A G G A T C C G A T C T G A C G T A G A C T C A T G C T A G T G C A G A C T A C G T A C G T

ARGFX/MA1463.1/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TCTAATGAATAC
TCTAATTAAA--
A C G T A G T C A C G T C G T A C G T A A C G T A C T G C G T A C G T A A C G T C G T A A G T C
C A G T G A T C G A C T G T C A C G T A A C G T A G C T C T G A C T G A G T C A A C G T A C G T

HOXB3/MA0903.1/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TCTAATGAATAC
NNTAATTANN--
A C G T A G T C A C G T C G T A C G T A A C G T A C T G C G T A C G T A A C G T C G T A A G T C
A C T G A G T C C G A T C T G A C T G A A G C T A C G T C T G A A T C G G A C T A C G T A C G T

PH0135.1_Phox2a/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TCTAATGAATAC--
NNACTAATTAATNNNN
A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C T G C G T A C G T A A C G T C G T A A G T C A C G T A C G T
A T G C A G C T T C G A G A T C A G C T G T C A C G T A A G C T A C G T C T G A C T G A A G C T C A T G T G A C A G C T T C A G