Information for 12-AGTCAGAAATCA (Motif 12)

C G T A A C T G A C G T A G T C C G T A A C T G C G T A C G T A C G T A A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A C G T A C G T A C G T A G T C A C G T A C T G C G T A A G T C A C G T
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets181.0 +/- 0.0bp
Average Position of motif in Background91.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX2/MA1113.2/Jaspar

Match Rank:1
Score:0.73
Offset:1
Orientation:forward strand
Alignment:AGTCAGAAATCA--
-GTCATAAATCATT
C G T A A C T G A C G T A G T C C G T A A C T G C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C G T
A C G T T C A G G A C T G T A C C T G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G A C T G C A T

PH0037.1_Hdx/Jaspar

Match Rank:2
Score:0.73
Offset:0
Orientation:forward strand
Alignment:AGTCAGAAATCA-----
AAGGCGAAATCATCGCA
C G T A A C T G A C G T A G T C C G T A A C T G C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:3
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:AGTCAGAAATCA---
NNCCATAAATCATNN
C G T A A C T G A C G T A G T C C G T A A C T G C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C G T A C G T
C T G A T C A G G A T C G T A C T C G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G C A T G C A T G A C T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AGTCAGAAATCA
GGCCATAAATCA
C G T A A C T G A C G T A G T C C G T A A C T G C G T A C G T A C G T A A C G T A G T C C G T A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

MEIS1(var.2)/MA1639.1/Jaspar

Match Rank:5
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AGTCAGAAATCA--
-GTCATCAATCATT
C G T A A C T G A C G T A G T C C G T A A C T G C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C G T
A C G T C T A G G A C T G A T C C T G A C A G T G T A C G T C A G C T A G C A T G T A C G C T A G C A T G C A T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:6
Score:0.62
Offset:2
Orientation:forward strand
Alignment:AGTCAGAAATCA
--TCATCAATCA
C G T A A C T G A C G T A G T C C G T A A C T G C G T A C G T A C G T A A C G T A G T C C G T A
A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:7
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGTCAGAAATCA-
-NCYATMAATCAY
C G T A A C T G A C G T A G T C C G T A A C T G C G T A C G T A C G T A A C G T A G T C C G T A A C G T
A C G T T A C G G A T C G A T C C T G A A G C T G T C A G C T A T C G A C G A T G A T C G C T A G A C T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AGTCAGAAATCA
TGAGTCAGCA----
A C G T A C G T C G T A A C T G A C G T A G T C C G T A A C T G C G T A C G T A C G T A A C G T A G T C C G T A
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T

MAFG/MA0659.2/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGTCAGAAATCA--
GAGTCAGCATTTTTT
A C G T C G T A A C T G A C G T A G T C C G T A A C T G C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C G T
C T A G C G T A T A C G C G A T G T A C C G T A A C T G G A T C C G T A C G A T G C A T G C A T G A C T G A C T G C A T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGTCAGAAATCA
RGCCATYAATCA
C G T A A C T G A C G T A G T C C G T A A C T G C G T A C G T A C G T A A C G T A G T C C G T A
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A