Information for 3-CAACACTGAGCT (Motif 5)

A G T C C G T A C G T A A G T C C G T A A G T C A C G T A C T G C G T A A C T G A G T C A C G T
Reverse Opposite:
C G T A A C T G A G T C A C G T A G T C C G T A A C T G A C G T A C T G A C G T A C G T A C T G
p-value:1e-4
log p-value:-1.023e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets36.0 +/- 0.0bp
Average Position of motif in Background87.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox11/MA0869.1/Jaspar

Match Rank:1
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CAACACTGAGCT----
-AACACTGAAATTGTT
A G T C C G T A C G T A A G T C C G T A A G T C A C G T A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T T C G A C G T A A G T C G T C A G T A C A C G T C T A G G T C A C T G A C G T A A C G T A C G T A C T G A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:2
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CAACACTGAGCT
MRSCACTYAA--
A G T C C G T A C G T A A G T C C G T A A G T C A C G T A C T G C G T A A C T G A G T C A C G T
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T

PH0152.1_Pou6f1_2/Jaspar

Match Rank:3
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CAACACTGAGCT---
AAACATAATGAGGTTGC
A C G T A C G T A G T C C G T A C G T A A G T C C G T A A G T C A C G T A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T
T C G A G T C A G C T A T A G C G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G T A C G G C A T C A G T A C T G G T A C

Sox5/MA0087.1/Jaspar

Match Rank:4
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CAACACTGAGCT
NAACAAT-----
A G T C C G T A C G T A A G T C C G T A A G T C A C G T A C T G C G T A A C T G A G T C A C G T
G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CAACACTGAGCT
AAGCACTTAA--
A G T C C G T A C G T A A G T C C G T A A G T C A C G T A C T G C G T A A C T G A G T C A C G T
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:6
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CAACACTGAGCT-
AATGAACAATGGAATT
A C G T A C G T A C G T A G T C C G T A C G T A A G T C C G T A A G T C A C G T A C T G C G T A A C T G A G T C A C G T A C G T
C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

MF0011.1_HMG_class/Jaspar

Match Rank:7
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CAACACTGAGCT
-AACAAT-----
A G T C C G T A C G T A A G T C C G T A A G T C A C G T A C T G C G T A A C T G A G T C A C G T
A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T A C G T A C G T A C G T

PB0062.1_Sox12_1/Jaspar

Match Rank:8
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----CAACACTGAGCT
NTTNAGAACAATTA---
A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A G T C C G T A A G T C A C G T A C T G C G T A A C T G A G T C A C G T
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:9
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CAACACTGAGCT
-ACCACTTAA--
A G T C C G T A C G T A A G T C C G T A A G T C A C G T A C T G C G T A A C T G A G T C A C G T
A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T

PH0151.1_Pou6f1_1/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CAACACTGAGCT---
GACGATAATGAGCTTGC
A C G T A C G T A G T C C G T A C G T A A G T C C G T A A G T C A C G T A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T
T A C G G C T A T G A C T A C G G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G A T C G G C A T C A G T C T A G G T A C