Information for 9-TGTCATAGTT (Motif 17)

A C G T A C T G A C G T A G T C C G T A A C G T C G T A A C T G A C G T A C G T
Reverse Opposite:
C G T A C G T A A G T C A C G T C G T A A C G T A C T G C G T A A G T C C G T A
p-value:1e-3
log p-value:-7.888e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif35.4
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets62.0 +/- 0.0bp
Average Position of motif in Background122.4 +/- 56.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEIS1/MA0498.2/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TGTCATAGTT
NTGTCAN----
A C G T A C G T A C T G A C G T A G T C C G T A A C G T C G T A A C T G A C G T A C G T
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TGTCATAGTT
CCTGTCAA----
A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C G T C G T A A C T G A C G T A C G T
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TGTCATAGTT
YTGWCADY---
A C G T A C G T A C T G A C G T A G T C C G T A A C G T C G T A A C T G A C G T A C G T
G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C A C G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TGTCATAGTT
TGACCTARTT
A C G T A C T G A C G T A G T C C G T A A C G T C G T A A C T G A C G T A C G T
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TGTCATAGTT
TGACCTARTT
A C G T A C T G A C G T A G T C C G T A A C G T C G T A A C T G A C G T A C G T
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

PH0169.1_Tgif1/Jaspar

Match Rank:6
Score:0.64
Offset:-7
Orientation:reverse strand
Alignment:-------TGTCATAGTT
NNNCAGCTGTCAATATN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C G T C G T A A C T G A C G T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TGTCATAGTT-
BTGACCTAVTTW
A C G T A C G T A C T G A C G T A G T C C G T A A C G T C G T A A C T G A C G T A C G T A C G T
A G T C A C G T T C A G T C G A A G T C A G T C A G C T C T G A T C A G C G A T G C A T G C A T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TGTCATAGTT
TGTCANYT--
A C G T A C T G A C G T A G T C C G T A A C G T C G T A A C T G A C G T A C G T
A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TGTCATAGTT
GCTGTCAA----
A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C G T C G T A A C T G A C G T A C G T
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T

PH0164.1_Six4/Jaspar

Match Rank:10
Score:0.62
Offset:-7
Orientation:reverse strand
Alignment:-------TGTCATAGTT
TNNNNGGTGTCATNTNT
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C G T C G T A A C T G A C G T A C G T
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T