Information for 3-GAAATGAAGGAT (Motif 5)

A C T G C G T A C G T A C G T A A C G T A C T G C G T A C G T A A C T G A C T G C G T A A C G T
Reverse Opposite:
C G T A A C G T A G T C A G T C A C G T A C G T A G T C C G T A A C G T A C G T A C G T A G T C
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets31.0 +/- 0.0bp
Average Position of motif in Background194.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GAAATGAAGGAT
GGYAATGAAA---
A C G T A C T G C G T A C G T A C G T A A C G T A C T G C G T A C G T A A C T G A C T G C G T A A C G T
C T A G T A C G G A C T T G C A T G C A C G A T T A C G C T G A T C G A C T G A A C G T A C G T A C G T

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GAAATGAAGGAT
CGGAAGTGAAAC--
A C G T A C G T A C T G C G T A C G T A C G T A A C G T A C T G C G T A C G T A A C T G A C T G C G T A A C G T
T G A C C T A G T C A G G T C A C G T A T C A G C G A T T C A G T C G A T G C A C T G A T A G C A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:3
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GAAATGAAGGAT---
---ATGATKGATGRC
A C T G C G T A C G T A C G T A A C G T A C T G C G T A C G T A A C T G A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:4
Score:0.62
Offset:4
Orientation:forward strand
Alignment:GAAATGAAGGAT--
----TGATKGATGR
A C T G C G T A C G T A C G T A A C G T A C T G C G T A C G T A A C T G A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G

PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GAAATGAAGGAT
GGAAGTGAAAST-
A C G T A C T G C G T A C G T A C G T A A C G T A C T G C G T A C G T A A C T G A C T G C G T A A C G T
C T A G C T A G C G T A C G T A T A C G C G A T C T A G C T G A C T G A C G T A T A C G G A C T A C G T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GAAATGAAGGAT
AGAAACGAAAGT-
A C G T A C T G C G T A C G T A C G T A A C G T A C T G C G T A C G T A A C T G A C T G C G T A A C G T
T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T A C G T

ZNF24/MA1124.1/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GAAATGAAGGAT--
-GAATGAATGAATG
A C T G C G T A C G T A C G T A A C G T A C T G C G T A C G T A A C T G A C T G C G T A A C G T A C G T A C G T
A C G T C T A G T C G A C T G A A G C T C T A G C T G A T C G A A G C T C T A G T C G A C T G A A G C T C T A G

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GAAATGAAGGAT
GGCMATGAAA---
A C G T A C T G C G T A C G T A C G T A A C G T A C T G C G T A C G T A A C T G A C T G C G T A A C G T
C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A A C G T A C G T A C G T

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GAAATGAAGGAT
HDGYAATGAAAN--
A C G T A C G T A C T G C G T A C G T A C G T A A C G T A C T G C G T A C G T A A C T G A C T G C G T A A C G T
G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A A C G T A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:GAAATGAAGGAT-----
------AAGGATATNTN
A C T G C G T A C G T A C G T A A C G T A C T G C G T A C G T A A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T