Information for 9-CATGCATTATAA (Motif 10)

A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T A C T G
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets116.0 +/- 0.0bp
Average Position of motif in Background115.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0079.1_Sry_1/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CATGCATTATAA-----
-TATAATTATAATATTC
A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A C A G T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C T G A C G A T C A G T T G A C

PB0174.1_Sox30_2/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CATGCATTATAA-----
-NCGTATTATAATCNTA
A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A T G C A G T C A C T G A C G T G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G A C G C A T C A G T C T G A

PH0148.1_Pou3f3/Jaspar

Match Rank:3
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CATGCATTATAA-
AAAATATGCATAATAAA
A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A C G T A A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

PB0069.1_Sox21_1/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CATGCATTATAA-----
-TTTAATTATAATTAAG
A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G A C T G C A T G A C T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C A T G

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:5
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CATGCATTATAA--
WYATGCATWATGCAT
A C G T A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A C G T A A C G T A C G T
C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CATGCATTATAA--
TCATGAATWATTCAT
A C G T A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A C G T A A C G T A C G T
G A C T G A T C G C T A C G A T C T A G G T C A C G T A C G A T G C A T C G T A G C A T C A G T A G T C G T C A C A G T

PB0064.1_Sox14_1/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CATGCATTATAA-----
-GCTAATTATAATTATC
A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C A T G G A T C G A C T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C A G T G T A C

PB0187.1_Tcf7_2/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CATGCATTATAA----
-CCGTATTATAAACAA
A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CATGCATTATAA-
-ATGCATAATTCA
A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A C G T A A C G T
A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

POU4F1/MA0790.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CATGCATTATAA---
-ATGAATAATTAATG
A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A C G T A A C G T A C G T A C G T
A C G T T C G A G A C T C T A G G T C A G C T A C G A T C G T A C G T A C G A T C G A T C G T A T C G A G A C T C A T G