Information for 7-CTGGTAACTTTA (Motif 9)

A G T C A C G T A C T G A C T G A C G T C G T A C G T A A G T C A C G T A C G T A C G T C G T A
Reverse Opposite:
A C G T C G T A C G T A C G T A A C T G A C G T A C G T C G T A A G T C A G T C C G T A A C T G
p-value:1e-4
log p-value:-1.023e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets9.0 +/- 0.0bp
Average Position of motif in Background40.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0109.1_Bbx_2/Jaspar

Match Rank:1
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CTGGTAACTTTA-
NNNNCTGTTAACNNTNN
A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C T G A C G T C G T A C G T A A G T C A C G T A C G T A C G T C G T A A C G T
A G T C G A T C T G C A C G T A T A G C A G C T C A T G C A G T A G C T C T G A G T C A G A T C T C G A C T G A C G A T A G T C C T G A

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:2
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CTGGTAACTTTA---
---GWAAYHTGAKMC
A G T C A C G T A C T G A C T G A C G T C G T A C G T A A G T C A C G T A C G T A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CTGGTAACTTTA
SCCTAGCAACAG--
A C G T A C G T A G T C A C G T A C T G A C T G A C G T C G T A C G T A A G T C A C G T A C G T A C G T C G T A
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T

SIX1/MA1118.1/Jaspar

Match Rank:4
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CTGGTAACTTTA--
---GTAACCTGATA
A G T C A C G T A C T G A C T G A C G T C G T A C G T A A G T C A C G T A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T C A T G C G A T G C T A C G T A G A T C G T A C G C A T C T A G C G T A A C G T G T C A

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:5
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CTGGTAACTTTA---
---GWAAYHTGABMC
A G T C A C G T A C T G A C T G A C G T C G T A C G T A A G T C A C G T A C G T A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

RBPJ/MA1116.1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CTGGTAACTTTA
CCTGGGAAAG---
A C G T A G T C A C G T A C T G A C T G A C G T C G T A C G T A A G T C A C G T A C G T A C G T C G T A
A G T C T A G C A G C T T C A G A C T G A C T G C G T A G T C A T G C A T A C G A C G T A C G T A C G T

THAP11/MA1573.1/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CTGGTAACTTTA-----
TGCTGGGAAATGTAGTCCN
A C G T A C G T A G T C A C G T A C T G A C T G A C G T C G T A C G T A A G T C A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A G C T A C T G G A T C A G C T C T A G A C T G C T A G T C G A T C G A C G T A A G C T C T A G C A G T C T G A T C A G A C G T G A T C A G T C A G C T

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CTGGTAACTTTA
-TGTTTACTTT-
A G T C A C G T A C T G A C T G A C G T C G T A C G T A A G T C A C G T A C G T A C G T C G T A
A C G T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T A C G T

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CTGGTAACTTTA
-TGTTTACTTT-
A G T C A C G T A C T G A C T G A C G T C G T A C G T A A G T C A C G T A C G T A C G T C G T A
A C G T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CTGGTAACTTTA
CAGGTAAGTAT-
A G T C A C G T A C T G A C T G A C G T C G T A C G T A A G T C A C G T A C G T A C G T C G T A
T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T A C G T