Information for 4-GGGTCGTCAA (Motif 27)

A C T G A C T G A C T G A C G T A G T C A C T G A C G T A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G C G T A A G T C A C T G C G T A A G T C A G T C A G T C
p-value:1e-3
log p-value:-8.762e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif5.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets6.0 +/- 0.0bp
Average Position of motif in Background18.0 +/- 22.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0067.1_Hoxc12/Jaspar

Match Rank:1
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--GGGTCGTCAA-----
TTAGGTCGTAAAATTTC
A C G T A C G T A C T G A C T G A C T G A C G T A G T C A C T G A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
G A C T G C A T T C G A T C A G T C A G A G C T G T A C C T A G A C G T G C T A C G T A G C T A G C T A G C A T A G C T C G A T G A T C

HOXC11/MA0651.1/Jaspar

Match Rank:2
Score:0.75
Offset:1
Orientation:forward strand
Alignment:GGGTCGTCAA--
-GGTCGTAAAAT
A C T G A C T G A C T G A C G T A G T C A C T G A C G T A G T C C G T A C G T A A C G T A C G T
A C G T C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T

HOXC12/MA0906.1/Jaspar

Match Rank:3
Score:0.74
Offset:1
Orientation:forward strand
Alignment:GGGTCGTCAA--
-GGTCGTAAAAA
A C T G A C T G A C T G A C G T A G T C A C T G A C G T A G T C C G T A C G T A A C G T A C G T
A C G T C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A

HOXD10/MA1506.1/Jaspar

Match Rank:4
Score:0.74
Offset:1
Orientation:forward strand
Alignment:GGGTCGTCAA--
-GGTCGTAAAAC
A C T G A C T G A C T G A C G T A G T C A C T G A C G T A G T C C G T A C G T A A C G T A C G T
A C G T T C A G T C A G A G C T G T A C T C A G A C G T C G T A C G T A G T C A G C T A G A T C

Hoxa11/MA0911.1/Jaspar

Match Rank:5
Score:0.74
Offset:1
Orientation:forward strand
Alignment:GGGTCGTCAA---
-GGTCGTAAAATT
A C T G A C T G A C T G A C G T A G T C A C T G A C G T A G T C C G T A C G T A A C G T A C G T A C G T
A C G T C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T

PH0077.1_Hoxd12/Jaspar

Match Rank:6
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--GGGTCGTCAA-----
CAAGGTCGTAAAATCTT
A C G T A C G T A C T G A C T G A C T G A C G T A G T C A C T G A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T

PH0076.1_Hoxd11/Jaspar

Match Rank:7
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--GGGTCGTCAA-----
TAAGGTCGTAAAATCCT
A C G T A C G T A C T G A C T G A C T G A C G T A G T C A C T G A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T C A G T C A G A G C T G A T C C T A G A C G T C G T A C G T A G C T A G C T A G C A T G A T C G A T C C A G T

HOXD12/MA0873.1/Jaspar

Match Rank:8
Score:0.72
Offset:1
Orientation:forward strand
Alignment:GGGTCGTCAA--
-AGTCGTAAAAA
A C T G A C T G A C T G A C G T A G T C A C T G A C G T A G T C C G T A C G T A A C G T A C G T
A C G T T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

HOXB9/MA1503.1/Jaspar

Match Rank:9
Score:0.72
Offset:2
Orientation:forward strand
Alignment:GGGTCGTCAA--
--GTCGTAAAAT
A C T G A C T G A C T G A C G T A G T C A C T G A C G T A G T C C G T A C G T A A C G T A C G T
A C G T A C G T T C A G A G C T A G T C T C A G A C G T G C T A C G T A G T C A G C T A G A C T

HOXC9/MA0485.2/Jaspar

Match Rank:10
Score:0.71
Offset:2
Orientation:forward strand
Alignment:GGGTCGTCAA--
--GTCGTAAAAT
A C T G A C T G A C T G A C G T A G T C A C T G A C G T A G T C C G T A C G T A A C G T A C G T
A C G T A C G T T C A G A G C T A G T C C T A G A C G T C G T A C G T A G T C A G C T A G A C T