Information for 2-CTAACCCCGG (Motif 2)

A G T C A C G T C G T A C G T A A G T C A G T C A G T C A G T C A C T G A C T G
Reverse Opposite:
A G T C A G T C A C T G A C T G A C T G A C T G A C G T A C G T C G T A A C T G
p-value:1e-4
log p-value:-1.122e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets109.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CTAACCCCGG
-TAATCCCN-
A G T C A C G T C G T A C G T A A G T C A G T C A G T C A G T C A C T G A C T G
A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T

PB0185.1_Tcf1_2/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CTAACCCCGG---
NNTAATCCNGNCNN
A C G T A G T C A C G T C G T A C G T A A G T C A G T C A G T C A G T C A C T G A C T G A C G T A C G T A C G T
G A T C G T A C G C A T T G C A G T C A G A C T G T A C A G T C T C A G A T C G C T A G A G T C T G C A C G T A

PITX3/MA0714.1/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTAACCCCGG
CTTAATCCC--
A C G T A G T C A C G T C G T A C G T A A G T C A G T C A G T C A G T C A C T G A C T G
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T A C G T

PITX1/MA0682.2/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CTAACCCCGG
CTAATCCC--
A G T C A C G T C G T A C G T A A G T C A G T C A G T C A G T C A C T G A C T G
G A T C A C G T C G T A C G T A A C G T G T A C A G T C G T A C A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTAACCCCGG
GCTAATCC---
A C G T A G T C A C G T C G T A C G T A A G T C A G T C A G T C A G T C A C T G A C T G
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T

PITX2/MA1547.1/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CTAACCCCGG
ATAATCCC--
A G T C A C G T C G T A C G T A A G T C A G T C A G T C A G T C A C T G A C T G
G T C A C G A T C T G A C G T A A C G T A G T C A G T C T G A C A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CTAACCCCGG
NYTAATCCYB-
A C G T A G T C A C G T C G T A C G T A A G T C A G T C A G T C A G T C A C T G A C T G
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T

OTX2/MA0712.2/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CTAACCCCGG
NNCTAATCCCNN
A C G T A C G T A G T C A C G T C G T A C G T A A G T C A G T C A G T C A G T C A C T G A C T G
G C A T G C A T G A T C G C A T C G T A G T C A C A G T G A T C G A T C G A T C G C A T C G A T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:9
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTAACCCCGG
YTAATCCY--
A G T C A C G T C G T A C G T A A G T C A G T C A G T C A G T C A C T G A C T G
G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:10
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----CTAACCCCGG-
GNNAGCTAATCCCCCN
A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A A G T C A G T C A G T C A G T C A C T G A C T G A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T