Information for 1-GTCAGACCGA (Motif 1)

A C T G A C G T A G T C C G T A A C T G C G T A A G T C A G T C A C T G C G T A
Reverse Opposite:
A C G T A G T C A C T G A C T G A C G T A G T C A C G T A C T G C G T A A G T C
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets142.0 +/- 0.0bp
Average Position of motif in Background71.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GTCAGACCGA
-CCAGACAG-
A C T G A C G T A G T C C G T A A C T G C G T A A G T C A G T C A C T G C G T A
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GTCAGACCGA
AGGTGHCAGACA--
A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C T G C G T A A G T C A G T C A C T G C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GTCAGACCGA
AGGTGNCAGACAG-
A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C T G C G T A A G T C A G T C A C T G C G T A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:4
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GTCAGACCGA-----
WNAGTCADAVTGAAACTN
A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C T G C G T A A G T C A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G C A T T A C G C G T A A T C G G C A T T A G C G C T A C G T A G C T A T G C A C G A T T C A G C T G A T C G A T C G A T A G C G A C T T C A G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GTCAGACCGA
ATGCCAGACN--
A C G T A C G T A C T G A C G T A G T C C G T A A C T G C G T A A G T C A G T C A C T G C G T A
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T

TBX15/MA0803.1/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GTCAGACCGA
-TCACACCT-
A C T G A C G T A G T C C G T A A C T G C G T A A G T C A G T C A C T G C G T A
A C G T G A C T T G A C T C G A A T G C T G C A A G T C G A T C G A C T A C G T

TBX1/MA0805.1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GTCAGACCGA
-TCACACCT-
A C T G A C G T A G T C C G T A A C T G C G T A A G T C A G T C A C T G C G T A
A C G T A C G T T G A C C T G A A T G C T C G A A G T C A G T C G A C T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GTCAGACCGA-
-CCAGACRSVB
A C T G A C G T A G T C C G T A A C T G C G T A A G T C A G T C A C T G C G T A A C G T
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

MGA/MA0801.1/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GTCAGACCGA
-TCACACCT-
A C T G A C G T A G T C C G T A A C T G C G T A A G T C A G T C A C T G C G T A
A C G T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T A C G T

IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GTCAGACCGA---
BAGTCATANTGAAAG
A C G T A C G T A C T G A C G T A G T C C G T A A C T G C G T A A G T C A G T C A C T G C G T A A C G T A C G T A C G T
A C T G C G T A A T C G C G A T T G A C C G T A C G A T G C T A G T C A C G A T T C A G C T G A C T G A C T G A T A C G