Information for 2-GATCGCTTAG (Motif 2)

A C T G C G T A A C G T A G T C A C T G A G T C A C G T A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A C G T A A C T G A G T C A C T G C G T A A C G T A G T C
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets36.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CUX2/MA0755.1/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GATCGCTTAG
TTATCGATTA-
A C G T A C T G C G T A A C G T A G T C A C T G A G T C A C G T A C G T C G T A A C T G
C G A T C G A T C G T A G C A T G A T C T C A G T C G A G A C T G A C T C G T A A C G T

BARHL2/MA0635.1/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GATCGCTTAG-
-ANCGTTTANN
A C T G C G T A A C G T A G T C A C T G A G T C A C G T A C G T C G T A A C T G A C G T
A C G T C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C

CUX1/MA0754.1/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GATCGCTTAG
NTATCGATTA-
A C G T A C T G C G T A A C G T A G T C A C T G A G T C A C G T A C G T C G T A A C T G
C A G T A C G T C G T A G C A T A G T C T C A G T C G A G A C T G A C T C T G A A C G T

VENTX/MA0724.1/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GATCGCTTAG
-ACCGATTAG
A C T G C G T A A C G T A G T C A C T G A G T C A C G T A C G T C G T A A C T G
A C G T C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G

BARHL1/MA0877.2/Jaspar

Match Rank:5
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GATCGCTTAG
--NCGTTTAN
A C T G C G T A A C G T A G T C A C T G A G T C A C G T A C G T C G T A A C T G
A C G T A C G T G T A C G A T C C T A G G C A T A C G T G C A T C G T A A T C G

PAX7/MA0680.1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GATCGCTTAG
TAATCGATTA-
A C G T A C T G C G T A A C G T A G T C A C T G A G T C A C G T A C G T C G T A A C T G
C G A T T G C A G T C A G A C T A G T C T C A G C G T A C G A T G A C T G C T A A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:7
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GATCGCTTAG
--BCMATTAG
A C T G C G T A A C G T A G T C A C T G A G T C A C G T A C G T C G T A A C T G
A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G

PAX3/MA0780.1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GATCGCTTAG
TAATCGATTA-
A C G T A C T G C G T A A C G T A G T C A C T G A G T C A C G T A C G T C G T A A C T G
C G A T T C G A G T C A A G C T A G T C T C A G C T G A A C G T G A C T G C T A A C G T

CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GATCGCTTAG
TATCGATNAN
A C T G C G T A A C G T A G T C A C T G A G T C A C G T A C G T C G T A A C T G
A C G T T G C A A G C T G A T C C T A G C T G A A G C T G T C A T C G A C G T A

PH0044.1_Homez/Jaspar

Match Rank:10
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GATCGCTTAG---
AAAACATCGTTTTTAAG
A C G T A C G T A C G T A C G T A C T G C G T A A C G T A G T C A C T G A G T C A C G T A C G T C G T A A C T G A C G T A C G T A C G T
C G T A G C A T G C T A G C T A T G A C G C T A A C G T G T A C A C T G C G A T C G A T G C A T G A C T A G C T G C T A C T G A C T A G