Information for 4-TTATAAAATGCC (Motif 4)

A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A C G T A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C C G T A A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets93.0 +/- 0.0bp
Average Position of motif in Background98.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL012.1_TATA-Box/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TTATAAAATGCC---
GTATAAAAGGCGGGG
A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TTATAAAATGCC---
GTATAAAAGGCGGGG
A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TTATAAAATGCC
CYHATAAAAN---
A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A C G T A C T G A G T C A G T C
T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C A C G T A C G T A C G T

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TTATAAAATGCC
NCYAATAAAA----
A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A C G T A C T G A G T C A G T C
C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:5
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----TTATAAAATGCC
CTACCAATAAAATTCT
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A C G T A C T G A G T C A G T C
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TTATAAAATGCC
GTCATAAAAN---
A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A C G T A C T G A G T C A G T C
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:7
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TTATAAAATGCC
CCYMATAAAA----
A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A C G T A C T G A G T C A G T C
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T

PH0046.1_Hoxa10/Jaspar

Match Rank:8
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----TTATAAAATGCC
TAGGTAATAAAATTCA
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A C G T A C T G A G T C A G T C
C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A

HOXA10/MA0899.1/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TTATAAAATGCC
GGTAATAAAAA---
A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A C G T A C T G A G T C A G T C
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T A C G T A C G T

PB0174.1_Sox30_2/Jaspar

Match Rank:10
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----TTATAAAATGCC
TAAGATTATAATACGG-
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A C G T A C T G A G T C A G T C
G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G A C G T