Information for 1-GTTCATAA (Motif 5)

A C T G A C G T A C G T A T G C C G T A A C G T C G T A C G T A
Reverse Opposite:
C G A T A C G T C G T A A C G T A T C G C G T A G T C A A G T C
p-value:1e-5
log p-value:-1.178e+01
Information Content per bp:1.898
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif44.44%
Number of Background Sequences with motif1521.2
Percentage of Background Sequences with motif1.60%
Average Position of motif in Targets125.6 +/- 50.6bp
Average Position of motif in Background97.4 +/- 91.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR1I3/MA1534.1/Jaspar

Match Rank:1
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---GTTCATAA
AAAGTTCAT--
A C G T A C G T A C G T A C T G A C G T A C G T A T G C C G T A A C G T C G T A C G T A
C G T A C T G A C T G A A C T G A C G T C A G T A G T C C T G A G A C T A C G T A C G T

VDR/MA0693.2/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---GTTCATAA
TGAGTTCA---
A C G T A C G T A C G T A C T G A C G T A C G T A T G C C G T A A C G T C G T A C G T A
G A C T T C A G C T G A A C T G A C G T C A G T G A T C C T G A A C G T A C G T A C G T

PH0012.1_Cdx1/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GTTCATAA-----
TAAGGTAATAAAATTA
A C G T A C G T A C G T A C T G A C G T A C G T A T G C C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

PH0013.1_Cdx2/Jaspar

Match Rank:4
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GTTCATAA-----
AAAGGTAATAAAATTT
A C G T A C G T A C G T A C T G A C G T A C G T A T G C C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

HOXC10/MA0905.1/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GTTCATAA---
-GTCGTAAAAT
A C T G A C G T A C G T A T G C C G T A A C G T C G T A C G T A A C G T A C G T A C G T
A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

HOXD10/MA1506.1/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GTTCATAA---
GGTCGTAAAAC
A C T G A C G T A C G T A T G C C G T A A C G T C G T A C G T A A C G T A C G T A C G T
T C A G T C A G A G C T G T A C T C A G A C G T C G T A C G T A G T C A G C T A G A T C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:7
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GTTCATAA---
-GTCATAAAAN
A C T G A C G T A C G T A T G C C G T A A C G T C G T A C G T A A C G T A C G T A C G T
A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

PH0073.1_Hoxc9/Jaspar

Match Rank:8
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GTTCATAA-----
GGAGGTCATTAATTAT
A C G T A C G T A C G T A C T G A C G T A C G T A T G C C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

CDX4/MA1473.1/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GTTCATAA---
GGCAATAAAAC
A C T G A C G T A C G T A T G C C G T A A C G T C G T A C G T A A C G T A C G T A C G T
C A T G T C A G A G T C T G C A C G T A A C G T C G T A C G T A G T C A G T C A A G T C

NR2C2(var.2)/MA1536.1/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GTTCATAA
GAGGTCAT--
A C G T A C G T A C T G A C G T A C G T A T G C C G T A A C G T C G T A C G T A
T C A G T C G A A C T G A C T G A C G T A G T C C T G A G C A T A C G T A C G T