Information for 13-TCTATAAAACAC (Motif 13)

A C G T A G T C A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C C G T A A G T C
Reverse Opposite:
A C T G A C G T A C T G A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G C G T A
p-value:1e-4
log p-value:-9.834e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif5.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets193.0 +/- 0.0bp
Average Position of motif in Background81.7 +/- 69.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0078.1_Hoxd13/Jaspar

Match Rank:1
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---TCTATAAAACAC-
CTACCAATAAAATTCT
A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C C G T A A G T C A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.69
Offset:1
Orientation:forward strand
Alignment:TCTATAAAACAC----
-GTATAAAAGGCGGGG
A C G T A G T C A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:3
Score:0.69
Offset:1
Orientation:forward strand
Alignment:TCTATAAAACAC----
-GTATAAAAGGCGGGG
A C G T A G T C A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

HOXA13/MA0650.2/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TCTATAAAACAC
CCCAATAAAAC--
A C G T A C G T A G T C A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C C G T A A G T C
T G A C T A G C A G T C G T C A C G T A A C G T C T G A C T G A C G T A G T C A G T A C A C G T A C G T

HOXD13/MA0909.2/Jaspar

Match Rank:5
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TCTATAAAACAC
CCCAATAAAAC--
A C G T A C G T A G T C A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C C G T A A G T C
T A G C T A G C A G T C G T C A C T G A C G A T C G T A C T G A G T C A T G C A T G A C A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TCTATAAAACAC
NGYCATAAAWCH-
A C G T A C G T A G T C A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C C G T A A G T C
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T

HOXB13/MA0901.2/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TCTATAAAACAC
AACCAATAAAATTT
A C G T A C G T A C G T A G T C A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C C G T A A G T C
C G T A C G T A G T A C G A T C G C T A C G T A A C G T C G T A G C T A G C T A G C T A G C A T G C A T G C A T

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TCTATAAAACAC
KGCCATAAAA---
A C G T A C G T A G T C A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C C G T A A G T C
C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A A C G T A C G T A C G T

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TCTATAAAACAC
CYHATAAAAN--
A C G T A G T C A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C C G T A A G T C
T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C A C G T A C G T

CDX1/MA0878.2/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TCTATAAAACAC
GGCCATAAAAC--
A C G T A C G T A G T C A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C C G T A A G T C
C A T G C T A G A G T C T G A C C G T A A C G T C T G A C G T A C T G A G T C A A G T C A C G T A C G T