Information for 2-CCTGACTGGC (Motif 25)

A G T C A G T C A C G T A C T G C G T A A G T C A C G T A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C C G T A A C T G A C G T A G T C C G T A A C T G A C T G
p-value:1e-3
log p-value:-8.642e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif8.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets138.0 +/- 0.0bp
Average Position of motif in Background81.2 +/- 58.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFYA/MA0060.3/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CCTGACTGGC-
NCTGATTGGNN
A G T C A G T C A C G T A C T G C G T A A G T C A C G T A C T G A C T G A G T C A C G T
A C G T A T G C A G C T A T C G C T G A A G C T C G A T C T A G T C A G G A C T A G C T

NFYC/MA1644.1/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CCTGACTGGC-
NCTGATTGGNN
A G T C A G T C A C G T A C T G C G T A A G T C A C G T A C T G A C T G A G T C A C G T
A C G T A T G C A G C T A T C G C T G A A G C T C G A T C A T G T C A G G A T C A G C T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CCTGACTGGC---
-BTGABTGACAGS
A G T C A G T C A C G T A C T G C G T A A G T C A C G T A C T G A C T G A G T C A C G T A C G T A C G T
A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CCTGACTGGC----
--TGATTGGCTANN
A G T C A G T C A C G T A C T G C G T A A G T C A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

NFY(CCAAT)/Promoter/Homer

Match Rank:5
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CCTGACTGGC-
-CCGATTGGCT
A G T C A G T C A C G T A C T G C G T A A G T C A C G T A C T G A C T G A G T C A C G T
A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CCTGACTGGC
-CTGTCTGG-
A G T C A G T C A C G T A C T G C G T A A G T C A C G T A C T G A C T G A G T C
A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CCTGACTGGC-
CTTGAGTGGCT
A G T C A G T C A C G T A C T G C G T A A G T C A C G T A C T G A C T G A G T C A C G T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CCTGACTGGC---
-NTGATTGACAGN
A G T C A G T C A C G T A C T G C G T A A G T C A C G T A C T G A C T G A G T C A C G T A C G T A C G T
A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CCTGACTGGC----
NNTNNTGTCTGGNNTNG
A C G T A C G T A C G T A G T C A G T C A C G T A C T G C G T A A G T C A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:10
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------CCTGACTGGC
GTCATGCHTGRCTGS-
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C T G C G T A A G T C A C G T A C T G A C T G A G T C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T