Information for 5-TTAATATTGCTA (Motif 5)

A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C G T A C T G A G T C A C G T C G T A
Reverse Opposite:
A C G T C G T A A C T G A G T C C G T A C G T A A C G T C G T A A C G T A C G T C G T A C G T A
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets100.0 +/- 0.0bp
Average Position of motif in Background160.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.81
Offset:0
Orientation:forward strand
Alignment:TTAATATTGCTA--
CTAATATTGCTAAA
A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.81
Offset:0
Orientation:forward strand
Alignment:TTAATATTGCTA--
CTAATATTGCTAAA
A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

Arid3b/MA0601.1/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TTAATATTGCTA
NTAATTAATAT-----
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C G T A C T G A G T C A C G T C G T A
A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TTAATATTGCTA
TTTAAT-------
A C G T A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C G T A C T G A G T C A C G T C G T A
G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TTAATATTGCTA
ATGAATATTC---
A C G T A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C G T A C T G A G T C A C G T C G T A
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T

Sox5/MA0087.1/Jaspar

Match Rank:6
Score:0.57
Offset:5
Orientation:forward strand
Alignment:TTAATATTGCTA
-----ATTGTTA
A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C G T A C T G A G T C A C G T C G T A
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T

CDX2/MA0465.2/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TTAATATTGCTA
NTTTTATTGCNN
A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C G T A C T G A G T C A C G T C G T A
C G A T G C A T C G A T G C A T G C A T T C G A G A C T C A G T C T A G G A T C G C A T G A C T

PB0145.1_Mafb_2/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TTAATATTGCTA---
ANATTTTTGCAANTN
A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C G T A C G T
C G T A G A C T C G T A C G A T G C A T C G A T G C A T A G C T C T A G T A G C T G C A T G C A G C A T A G C T C A T G

PB0042.1_Mafk_1/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TTAATATTGCTA----
-TAAAAATGCTGACTT
A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C G T A C G T A C G T
A C G T C G A T C G T A C G T A C G T A G C T A C G T A G A C T C A T G G T A C G C A T C A T G C G T A A G T C G C A T G A C T

PB0146.1_Mafk_2/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TTAATATTGCTA--
GAAAAAATTGCAAGG
A C G T A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C G T
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G