Information for 1-GCGAGGTACA (Motif 1)

A C T G A G T C A C T G C G T A A C T G A C T G A C G T C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T C G T A A G T C A G T C A C G T A G T C A C T G A G T C
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets159.0 +/- 0.0bp
Average Position of motif in Background147.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GCGAGGTACA-
-CCAGGAACAG
A C T G A G T C A C T G C G T A A C T G A C T G A C G T C G T A A G T C C G T A A C G T
A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

PB0156.1_Plagl1_2/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GCGAGGTACA----
GCTGGGGGGTACCCCTT
A C G T A C G T A C G T A C T G A G T C A C T G C G T A A C T G A C T G A C G T C G T A A G T C C G T A A C G T A C G T A C G T A C G T
C T A G A G T C G C A T C T A G C A T G A C T G C T A G A C T G A C T G A C G T C T G A G A T C G T A C G T A C G A T C G A C T C G A T

PB0039.1_Klf7_1/Jaspar

Match Rank:3
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------GCGAGGTACA
NNAGGGGCGGGGTNNA
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C T G C G T A A C T G A C T G A C G T C G T A A G T C C G T A
G C T A C G A T C T G A C T A G C T A G A C T G A C T G G A T C C A T G A C T G C A T G C A T G A G C T G A T C T C A G C G T A

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:4
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCGAGGTACA-
-VCAGGTRDRY
A C T G A G T C A C T G C G T A A C T G A C T G A C G T C G T A A G T C C G T A A C G T
A C G T T G C A G T A C C G T A A T C G A C T G A C G T C T A G C G A T T C G A A G T C

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GCGAGGTACA-----
ACTCCAAGTACTTGGAA
A C G T A C G T A C T G A G T C A C T G C G T A A C T G A C T G A C G T C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
T C G A G T A C C G A T A T G C T A G C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A C T G T C A G T G C A G T C A

DMRT3/MA0610.1/Jaspar

Match Rank:6
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GCGAGGTACA--
-NTTGATACATT
A C T G A G T C A C T G C G T A A C T G A C T G A C G T C G T A A G T C C G T A A C G T A C G T
A C G T C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T

KLF3/MA1516.1/Jaspar

Match Rank:7
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GCGAGGTACA
NGGGCGTGGTC--
A C G T A C G T A C G T A C T G A G T C A C T G C G T A A C T G A C T G A C G T C G T A A G T C C G T A
C G A T C T A G A C T G A C T G G A T C C A T G A G C T C T A G A T C G A G C T G A T C A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GCGAGGTACA-------
-CGAAGCACACAAAATA
A C T G A G T C A C T G C G T A A C T G A C T G A C G T C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

POL011.1_XCPE1/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GCGAGGTACA
GGGCGGGACC
A C T G A G T C A C T G C G T A A C T G A C T G A C G T C G T A A G T C C G T A
A C T G A T C G A C T G A G T C A C T G A C T G C T A G C G T A A T G C G T A C

POL006.1_BREu/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GCGAGGTACA
GGCGCGCT---
A C G T A C T G A G T C A C T G C G T A A C T G A C T G A C G T C G T A A G T C C G T A
C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T A C G T