Information for 9-GAATCTTTTATA (Motif 9)

A C T G C G T A C G T A A C G T A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A
Reverse Opposite:
A C G T C G T A A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C G T A C G T A G T C
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets135.0 +/- 0.0bp
Average Position of motif in Background99.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.67
Offset:3
Orientation:forward strand
Alignment:GAATCTTTTATA---
---CCTTTTATAGNC
A C T G C G T A C G T A A C G T A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GAATCTTTTATA-
NNNNNNCTTTTATAN
A C G T A C G T A C T G C G T A C G T A A C G T A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

TBP/MA0108.2/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GAATCTTTTATA-
NNNNNNCTTTTATAN
A C G T A C G T A C T G C G T A C G T A A C G T A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:GAATCTTTTATA---
-----TTTTATTRGN
A C T G C G T A C G T A A C G T A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C G T G C A T C G T A G A C T C A G T C T A G A T C G G A T C

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:5
Score:0.61
Offset:5
Orientation:forward strand
Alignment:GAATCTTTTATA---
-----TTTTATKRGG
A C T G C G T A C G T A A C G T A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.61
Offset:5
Orientation:forward strand
Alignment:GAATCTTTTATA---
-----TTTTATGGCM
A C T G C G T A C G T A A C G T A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GAATCTTTTATA--
----NTTTTATDRG
A C T G C G T A C G T A A C G T A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C T A G G C A T A C G T G C A T G A C T C G T A G A C T C A T G C T A G A T C G

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:8
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GAATCTTTTATA---
---DGWTTTATGRCN
A C T G C G T A C G T A A C G T A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

PH0078.1_Hoxd13/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GAATCTTTTATA-----
-NNANTTTTATTGGNNN
A C T G C G T A C G T A A C G T A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

HSF2/MA0770.1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GAATCTTTTATA-
GAANGTTCTAGAA
A C T G C G T A C G T A A C G T A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C G T
T C A G C T G A G C T A G A T C T C A G G C A T C A G T G A T C A G C T T C G A A C T G G T C A G C T A