Information for 2-TTTGTTGATGGA (Motif 3)

A C G T A C G T A C G T A C T G A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A
Reverse Opposite:
A C G T A G T C A G T C C G T A A C G T A G T C C G T A C G T A A G T C C G T A C G T A C G T A
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets20.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0134.1_Pbx1/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TTTGTTGATGGA---
NNNNNATTGATGNGTGN
A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C G T A C G T
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

Foxj2/MA0614.1/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TTTGTTGATGGA
-TTGTTTAC---
A C G T A C G T A C G T A C T G A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A
A C G T C G A T A C G T C T A G A C G T C G A T A C G T C G T A A G T C A C G T A C G T A C G T

PB0016.1_Foxj1_1/Jaspar

Match Rank:3
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TTTGTTGATGGA
NNNNTTTGTTTACNNT
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A
G T C A G T C A G C A T C A G T G C A T C A G T C G A T C T A G C G A T C G A T C A G T C T G A A G T C C G A T G C A T C G A T

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:4
Score:0.63
Offset:5
Orientation:forward strand
Alignment:TTTGTTGATGGA---
-----TGATKGATGR
A C G T A C G T A C G T A C T G A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G

PB0093.1_Zfp105_1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TTTGTTGATGGA-
NTNTTGTTGTTTGTN
A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T
G A T C C G A T G T A C C G A T G A C T C A T G G C A T A G C T C T A G C G A T C G A T C A G T C T A G G A C T C G A T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TTTGTTGATGGA-
---GTTAATGGCC
A C G T A C G T A C G T A C T G A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T
A C G T A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:7
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:TTTGTTGATGGA----
----ATGATKGATGRC
A C G T A C G T A C G T A C T G A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

MF0011.1_HMG_class/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TTTGTTGATGGA
ATTGTT------
A C G T A C G T A C G T A C T G A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A
G C T A A C G T G A C T C T A G G C A T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TTTGTTGATGGA
TTTGATTGATGN-
A C G T A C G T A C G T A C G T A C T G A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G A C G T

SOX4/MA0867.2/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TTTGTTGATGGA
NCCTTTGTTC-----
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A
A G T C A G T C G A T C C G A T A G C T A G C T T A C G C G A T A G C T G A T C A C G T A C G T A C G T A C G T A C G T