Information for 1-CACCGTGCCG (Motif 1)

A G T C C G T A A G T C A G T C A C T G A C G T A C T G A G T C A G T C A C T G
Reverse Opposite:
A G T C A C T G A C T G A G T C C G T A A G T C A C T G A C T G A C G T A C T G
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets63.0 +/- 0.0bp
Average Position of motif in Background137.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL006.1_BREu/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CACCGTGCCG
-AGCGCGCC-
A G T C C G T A A G T C A G T C A C T G A C G T A C T G A G T C A G T C A C T G
A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T

ZFP57/MA1583.1/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CACCGTGCCG----
-GCATTGCCGCAGT
A G T C C G T A A G T C A G T C A C T G A C G T A C T G A G T C A G T C A C T G A C G T A C G T A C G T A C G T
A C G T A T C G A T G C T C G A A C G T A C G T A T C G G A T C T A G C C T A G A T G C T C G A T A C G A G C T

Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer

Match Rank:3
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CACCGTGCCG--
--NANTGCSGCA
A G T C C G T A A G T C A G T C A C T G A C G T A C T G A G T C A G T C A C T G A C G T A C G T
A C G T A C G T G A T C G C T A C A G T A C G T T A C G A G T C A T G C C T A G A G T C T C G A

HIF1A/MA1106.1/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CACCGTGCCG
GTACGTGCCC
A G T C C G T A A G T C A G T C A C T G A C G T A C T G A G T C A G T C A C T G
T A C G A G C T C G T A A G T C C T A G A G C T T C A G G T A C A T G C A T G C

Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CACCGTGCCG-
NHGTCGTGAYDN
A C G T A G T C C G T A A G T C A G T C A C T G A C G T A C T G A G T C A G T C A C T G A C G T
C T A G G T C A C A T G A C G T A T G C T C A G C A G T A C T G G T C A A G T C C G A T A G T C

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CACCGTGCCG
GGACGTGC--
A G T C C G T A A G T C A G T C A C T G A C G T A C T G A G T C A G T C A C T G
T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:7
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CACCGTGCCG-
TGGCACCATGCCAA
A C G T A C G T A C G T A G T C C G T A A G T C A G T C A C T G A C G T A C T G A G T C A G T C A C T G A C G T
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

MYC/MA0147.3/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CACCGTGCCG
GGCCACGTGCCC
A C G T A C G T A G T C C G T A A G T C A G T C A C T G A C G T A C T G A G T C A G T C A C T G
T A C G T A C G T A G C T G A C C T G A A G T C T C A G A G C T A T C G A T G C A G T C A T G C

NFIX(var.2)/MA1528.1/Jaspar

Match Rank:9
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----CACCGTGCCG--
NNTGGCACNNTGCCAAN
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C A G T C A C T G A C G T A C T G A G T C A G T C A C T G A C G T A C G T
T A G C G A T C C A G T A C T G A C T G G T A C C T G A G T A C T A G C T C A G G A C T C A T G A G T C A G T C T G C A C G T A T A G C

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CACCGTGCCG
RTACGTGC--
A G T C C G T A A G T C A G T C A C T G A C G T A C T G A G T C A G T C A C T G
C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T