Information for 3-CCCTGAATGGGC (Motif 3)

A G T C A G T C A G T C A C G T A C T G C G T A C G T A A C G T A C T G A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C A G T C C G T A A C G T A C G T A G T C C G T A A C T G A C T G A C T G
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets133.0 +/- 0.0bp
Average Position of motif in Background15.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0170.1_Sox17_2/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CCCTGAATGGGC--
NTTNTATGAATGTGNNC
A C G T A C G T A C G T A G T C A G T C A G T C A C G T A C T G C G T A C G T A A C G T A C T G A C T G A C T G A G T C A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

PB0178.1_Sox8_2/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CCCTGAATGGGC
NNTNTCATGAATGT--
A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C G T A C T G C G T A C G T A A C G T A C T G A C T G A C T G A G T C
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T

NFYA/MA0060.3/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CCCTGAATGGGC
-NCTGATTGGNN
A G T C A G T C A G T C A C G T A C T G C G T A C G T A A C G T A C T G A C T G A C T G A G T C
A C G T A C G T A T G C A G C T A T C G C T G A A G C T C G A T C T A G T C A G G A C T A G C T

NFYC/MA1644.1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CCCTGAATGGGC
-NCTGATTGGNN
A G T C A G T C A G T C A C G T A C T G C G T A C G T A A C G T A C T G A C T G A C T G A G T C
A C G T A C G T A T G C A G C T A T C G C T G A A G C T C G A T C A T G T C A G G A T C A G C T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCCTGAATGGGC
--GTTAATGGCC
A G T C A G T C A G T C A C G T A C T G C G T A C G T A A C G T A C T G A C T G A C T G A G T C
A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

SRF/MA0083.3/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCCTGAATGGGC-
TGNCCATATATGGTCA
A C G T A C G T A C G T A G T C A G T C A G T C A C G T A C T G C G T A C G T A A C G T A C T G A C T G A C T G A G T C A C G T
G C A T A C T G G T C A G A T C A T G C C G T A C G A T T G C A A G C T G C T A G C A T T C A G A T C G C A G T T G A C C G T A

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CCCTGAATGGGC---
---TGATTGGCTANN
A G T C A G T C A G T C A C G T A C T G C G T A C G T A A C G T A C T G A C T G A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCCTGAATGGGC
CCATATATGGNA
A G T C A G T C A G T C A C G T A C T G C G T A C G T A A C G T A C T G A C T G A C T G A G T C
A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A

NFY(CCAAT)/Promoter/Homer

Match Rank:9
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CCCTGAATGGGC
--CCGATTGGCT
A G T C A G T C A G T C A C G T A C T G C G T A C G T A A C G T A C T G A C T G A C T G A G T C
A C G T A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T

Dux/MA0611.1/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CCCTGAATGGGC
--TTGATTGN--
A G T C A G T C A G T C A C G T A C T G C G T A C G T A A C G T A C T G A C T G A C T G A G T C
A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G A C G T A C G T