Information for 2-AGGCAATATTTA (Motif 2)

C G T A A C T G A C T G A G T C C G T A C G T A A C G T C G T A A C G T A C G T A C G T C G T A
Reverse Opposite:
A C G T C G T A C G T A C G T A A C G T C G T A A C G T A C G T A C T G A G T C A G T C A C G T
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets152.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.68
Offset:2
Orientation:forward strand
Alignment:AGGCAATATTTA----
--CTAATATTGCTAAA
C G T A A C T G A C T G A G T C C G T A C G T A A C G T C G T A A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.68
Offset:2
Orientation:forward strand
Alignment:AGGCAATATTTA----
--CTAATATTGCTAAA
C G T A A C T G A C T G A G T C C G T A C G T A A C G T C G T A A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

FOXB1/MA0845.1/Jaspar

Match Rank:3
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:AGGCAATATTTA----
-----ATATTTACATA
C G T A A C T G A C T G A G T C C G T A C G T A A C G T C G T A A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G A C T T C G A C G A T C G A T A C G T C T G A G A T C G C T A G A C T C G T A

FOXC1/MA0032.2/Jaspar

Match Rank:4
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:AGGCAATATTTA----
-----ATATTTACATA
C G T A A C T G A C T G A G T C C G T A C G T A A C G T C G T A A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G A C T T C G A G A C T C A G T C A G T C G T A A G T C G C T A G A C T C G T A

PB0146.1_Mafk_2/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AGGCAATATTTA-
CCTTGCAATTTTTNN
A C G T A C G T C G T A A C T G A C T G A G T C C G T A C G T A A C G T C G T A A C G T A C G T A C G T C G T A A C G T
A G T C T A G C C A G T A C G T C T A G G T A C C T G A G T C A C G A T C G A T G A C T G A C T A G C T C A G T A G T C

MF0010.1_Homeobox_class/Jaspar

Match Rank:6
Score:0.59
Offset:4
Orientation:forward strand
Alignment:AGGCAATATTTA
----AATAATT-
C G T A A C T G A C T G A G T C C G T A C G T A A C G T C G T A A C G T A C G T A C G T C G T A
A C G T A C G T A C G T A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:AGGCAATATTTA-
---GAATATTCAT
C G T A A C T G A C T G A G T C C G T A C G T A A C G T C G T A A C G T A C G T A C G T C G T A A C G T
A C G T A C G T A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T

FOXL1/MA0033.2/Jaspar

Match Rank:8
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:AGGCAATATTTA-
------TGTTTAC
C G T A A C T G A C T G A G T C C G T A C G T A A C G T C G T A A C G T A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T C T A G A C G T C A G T A C G T C T G A G A T C

FOXA1/MA0148.4/Jaspar

Match Rank:9
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:AGGCAATATTTA---
---NNATGTTTACAT
C G T A A C T G A C T G A G T C C G T A C G T A A C G T C G T A A C G T A C G T A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T G C T A G T A C G C T A C G A T C T A G G C A T C A G T A C G T C T G A G A T C G C T A G C A T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---AGGCAATATTTA
NACAGGAAAT-----
A C G T A C G T A C G T C G T A A C T G A C T G A G T C C G T A C G T A A C G T C G T A A C G T A C G T A C G T C G T A
T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T A C G T A C G T