Information for 13-CAGTAACGAGAT (Motif 13)

A G T C C G T A A C T G A C G T C G T A C G T A A G T C A C T G C G T A A C T G C G T A A C G T
Reverse Opposite:
C G T A A C G T A G T C A C G T A G T C A C T G A C G T A C G T C G T A A G T C A C G T A C T G
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets177.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:1
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CAGTAACGAGAT--
--GWAAYHTGAKMC
A G T C C G T A A C T G A C G T C G T A C G T A A G T C A C T G C G T A A C T G C G T A A C G T A C G T A C G T
A C G T A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

HOXA9/MA0594.2/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CAGTAACGAGAT
NNTTTACGAC--
A G T C C G T A A C T G A C G T C G T A C G T A A G T C A C T G C G T A A C T G C G T A A C G T
A T G C C T A G C G A T C G A T C G A T C T G A A G T C C A T G C T G A A G T C A C G T A C G T

SIX1/MA1118.1/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CAGTAACGAGAT-
--GTAACCTGATA
A G T C C G T A A C T G A C G T C G T A C G T A A G T C A C T G C G T A A C T G C G T A A C G T A C G T
A C G T A C G T C A T G C G A T G C T A C G T A G A T C G T A C G C A T C T A G C G T A A C G T G T C A

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:4
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CAGTAACGAGAT--
--GWAAYHTGABMC
A G T C C G T A A C T G A C G T C G T A C G T A A G T C A C T G C G T A A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

SREBF2(var.2)/MA0828.1/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CAGTAACGAGAT
--GTCACGTGAT
A G T C C G T A A C T G A C G T C G T A C G T A A G T C A C T G C G T A A C T G C G T A A C G T
A C G T A C G T T C A G G C A T T A G C C T G A A T G C T A C G G A C T A T C G C G T A A G C T

PH0040.1_Hmbox1/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CAGTAACGAGAT---
GANGTTAACTAGTTTNN
A C G T A C G T A G T C C G T A A C T G A C G T C G T A C G T A A G T C A C T G C G T A A C T G C G T A A C G T A C G T A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

POU6F1(var.2)/MA1549.1/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CAGTAACGAGAT
--ATAATGAGGT
A G T C C G T A A C T G A C G T C G T A C G T A A G T C A C T G C G T A A C T G C G T A A C G T
A C G T A C G T C T G A G A C T T C G A C G T A A C G T A C T G G C T A A C T G T A C G C G A T

RFX7/MA1554.1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CAGTAACGAGAT
NTAGCAACG----
A C G T A G T C C G T A A C T G A C G T C G T A C G T A A G T C A C T G C G T A A C T G C G T A A C G T
C T G A G A C T T C G A T A C G G A T C C T G A C T G A A T G C T A C G A C G T A C G T A C G T A C G T

SIX2/MA1119.1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CAGTAACGAGAT--
AACTGAAACCTGATAC
A C G T A C G T A G T C C G T A A C T G A C G T C G T A C G T A A G T C A C T G C G T A A C T G C G T A A C G T A C G T A C G T
G C T A G C T A T G A C C G A T C A T G G C T A G T C A C T G A G A T C G T A C G C A T C T A G C G T A A C G T G T C A G A T C

MLX/MA0663.1/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CAGTAACGAGAT
--ATCACGTGAT
A G T C C G T A A C T G A C G T C G T A C G T A A G T C A C T G C G T A A C T G C G T A A C G T
A C G T A C G T C T G A A C G T A G T C C T G A A G T C C A T G C G A T C A T G C T G A G A C T