Information for 4-GCCCAGACGTGA (Motif 7)

A C T G A G T C A G T C A G T C C G T A A C T G C G T A A G T C A C T G A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A A G T C A C T G A C G T A G T C A C G T A C T G A C T G A C T G A G T C
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.0 +/- 0.0bp
Average Position of motif in Background15.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---GCCCAGACGTGA--
CAAATCCAGACATCACA
A C G T A C G T A C G T A C T G A G T C A G T C A G T C C G T A A C T G C G T A A G T C A C T G A C G T A C T G C G T A A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:GCCCAGACGTGA
--CCAGACRSVB
A C T G A G T C A G T C A G T C C G T A A C T G C G T A A G T C A C T G A C G T A C T G C G T A
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GCCCAGACGTGA
TGCCCAGNHW---
A C G T A C T G A G T C A G T C A G T C C G T A A C T G C G T A A G T C A C T G A C G T A C T G C G T A
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GCCCAGACGTGA
--CCAGACAG--
A C T G A G T C A G T C A G T C C G T A A C T G C G T A A G T C A C T G A C G T A C T G C G T A
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GCCCAGACGTGA
-TCCAGATGTT-
A C T G A G T C A G T C A G T C C G T A A C T G C G T A A G T C A C T G A C G T A C T G C G T A
A C G T A C G T T G A C A G T C C G T A A T C G G T C A A C G T A T C G A G C T A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:6
Score:0.64
Offset:4
Orientation:forward strand
Alignment:GCCCAGACGTGA
----RTACGTGC
A C T G A G T C A G T C A G T C C G T A A C T G C G T A A G T C A C T G A C G T A C T G C G T A
A C G T A C G T A C G T A C G T C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C

TWIST1/MA1123.2/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCCCAGACGTGA
ATTCCAGATGTTT
A C G T A C T G A G T C A G T C A G T C C G T A A C T G C G T A A G T C A C T G A C G T A C T G C G T A
C G T A C G A T C G A T T G A C G T A C C G T A A C T G T G C A G A C T A C T G A C G T A G C T G C A T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GCCCAGACGTGA
NTGCCCANNGGTNA
A C G T A C G T A C T G A G T C A G T C A G T C C G T A A C T G C G T A A G T C A C T G A C G T A C T G C G T A
T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:9
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCCCAGACGTGA---
TCCCAGMCRAGCCCC
A C T G A G T C A G T C A G T C C G T A A C T G C G T A A G T C A C T G A C G T A C T G C G T A A C G T A C G T A C G T
A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:10
Score:0.62
Offset:4
Orientation:forward strand
Alignment:GCCCAGACGTGA
----GGACGTGC
A C T G A G T C A G T C A G T C C G T A A C T G C G T A A G T C A C T G A C G T A C T G C G T A
A C G T A C G T A C G T A C G T T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C