Information for 16-TTCAGTGGCTCA (Motif 16)

A C G T A C G T A G T C C G T A A C T G A C G T A C T G A C T G A G T C A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A C T G A G T C A G T C C G T A A G T C A C G T A C T G C G T A C G T A
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets23.0 +/- 0.0bp
Average Position of motif in Background61.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:1
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----TTCAGTGGCTCA-
NTNNTTAAGTGGNTNAN
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C G T A C T G A C T G A G T C A C G T A G T C C G T A A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

PH0115.1_Nkx2-6/Jaspar

Match Rank:2
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----TTCAGTGGCTCA
AATNTTAAGTGGNTNN
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C G T A C T G A C T G A G T C A C G T A G T C C G T A
C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A

NKX2-2/MA1645.1/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---TTCAGTGGCTCA
NNNTTGAGTGGNNN-
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C G T A C T G A C T G A G T C A C G T A G T C C G T A
C G A T C G A T A G T C A G C T C A G T T A C G C G T A C A T G C G A T C T A G A C T G G C A T C G A T C T G A A C G T

PH0114.1_Nkx2-5/Jaspar

Match Rank:4
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----TTCAGTGGCTCA
AAATTCAAGTGGNTTN
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C G T A C T G A C T G A G T C A C G T A G T C C G T A
C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TTCAGTGGCTCA
CTTGAGTGGCT--
A C G T A C G T A C G T A G T C C G T A A C T G A C G T A C T G A C T G A G T C A C G T A G T C C G T A
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T

PH0171.1_Nkx2-1/Jaspar

Match Rank:6
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TTCAGTGGCTCA
AANTTCAAGTGGCTTN
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C G T A C T G A C T G A G T C A C G T A G T C C G T A
C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A

NKX2-5/MA0063.2/Jaspar

Match Rank:7
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TTCAGTGGCTCA
NNTTGAGTGNN---
A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C G T A C T G A C T G A G T C A C G T A G T C C G T A
C G A T A G C T C G A T G C A T C T A G C G T A C T A G G A C T C T A G A C T G A G C T A C G T A C G T A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:8
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TTCAGTGGCTCA
AATTTCAAGTGGCTTN
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C G T A C T G A C T G A G T C A C G T A G T C C G T A
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:9
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TTCAGTGGCTCA
GTAGGTCACTGGGTCA
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C G T A C T G A C T G A G T C A C G T A G T C C G T A
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A

NR1D1/MA1531.1/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TTCAGTGGCTCA-
GGGTCAGTAGGTCAG
A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C G T A C T G A C T G A G T C A C G T A G T C C G T A A C G T
T C A G C A T G C T A G A C G T A G T C C G T A T A C G A C G T T C G A A C T G C T A G A C G T A G T C C T G A C T A G