Information for 2-TCTGGCCTAC (Motif 11)

A C G T A G T C A C G T A C T G A C T G A G T C A G T C A C G T C G T A A G T C
Reverse Opposite:
A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A A C T G C G T A
p-value:1e-4
log p-value:-9.246e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif9.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets194.0 +/- 0.0bp
Average Position of motif in Background71.4 +/- 69.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--TCTGGCCTAC
GGTCTGGCAT--
A C G T A C G T A C G T A G T C A C G T A C T G A C T G A G T C A G T C A C G T C G T A A G T C
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TCTGGCCTAC---
NNHYTGACCTAGWTT
A C G T A C G T A C G T A G T C A C G T A C T G A C T G A G T C A G T C A C G T C G T A A G T C A C G T A C G T A C G T
A C G T G A T C G A C T G A T C A C G T A C T G T C G A A G T C A G T C A G C T C T G A T C A G C G A T C G A T G C A T

PB0094.1_Zfp128_1/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TCTGGCCTAC-----
TCTTTGGCGTACCCTAA
A C G T A C G T A C G T A G T C A C G T A C T G A C T G A G T C A G T C A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T G A T C G C A T C A G T C A G T C A T G C T A G A G T C C T A G A C G T C G T A G T A C T A G C A G T C A G C T G T C A C T G A

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:4
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TCTGGCCTAC
--AGGCCTAG
A C G T A G T C A C G T A C T G A C T G A G T C A G T C A C G T C G T A A G T C
A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G

RORC/MA1151.1/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TCTGGCCTAC----
--TGACCTANTTAN
A C G T A G T C A C G T A C T G A C T G A G T C A G T C A C G T C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G A C T T C A G T G C A G A T C G T A C A G C T T G C A T A G C G C A T C G A T G C T A G A C T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TCTGGCCTAC--
--TGACCTARTT
A C G T A G T C A C G T A C T G A C T G A G T C A G T C A C G T C G T A A G T C A C G T A C G T
A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TCTGGCCTAC--
--TGACCTARTT
A C G T A G T C A C G T A C T G A C T G A G T C A G T C A C G T C G T A A G T C A C G T A C G T
A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TCTGGCCTAC
CNAGGCCT--
A C G T A G T C A C G T A C T G A C T G A G T C A G T C A C G T C G T A A G T C
A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TCTGGCCTAC-----
-TTGACCTANTTATN
A C G T A G T C A C G T A C T G A C T G A G T C A G T C A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TCTGGCCTAC---
-BTGACCTAVTTW
A C G T A G T C A C G T A C T G A C T G A G T C A G T C A C G T C G T A A G T C A C G T A C G T A C G T
A C G T A G T C A C G T T C A G T C G A A G T C A G T C A G C T C T G A T C A G C G A T G C A T G C A T