Information for 17-CCTCACAAATAA (Motif 20)

A G T C A G T C A C G T A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A A C G T A C G T A C G T A C T G A C G T A C T G C G T A A C T G A C T G
p-value:1e-4
log p-value:-1.023e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets27.0 +/- 0.0bp
Average Position of motif in Background33.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0150.1_Pou4f3/Jaspar

Match Rank:1
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCTCACAAATAA--
GACNTCATTAATAANN
A C G T A C G T A G T C A G T C A C G T A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A A C G T A C G T
C T A G C T G A T G A C G A T C C A G T G T A C C G T A C G A T C G A T C G T A C T G A C G A T C G T A G T C A A G T C C G A T

PBX2/MA1113.2/Jaspar

Match Rank:2
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CCTCACAAATAA--
-GTCATAAATCATT
A G T C A G T C A C G T A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A A C G T A C G T
A C G T T C A G G A C T G T A C C T G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G A C T G C A T

PB0172.1_Sox1_2/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CCTCACAAATAA--
NNNTAACAATTATAN
A C G T A G T C A G T C A C G T A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A A C G T A C G T
A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G

TBX20/MA0689.1/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CCTCACAAATAA
CTTCACACCTA-
A G T C A G T C A C G T A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A
A G T C G C A T G C A T G T A C G T C A T G A C G T C A G T A C A G T C G A C T G C T A A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CCTCACAAATAA
CCYMATAAAA--
A G T C A G T C A C G T A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CCTCACAAATAA-
AAAGCTCGTAAAATTT
A C G T A C G T A C G T A G T C A G T C A C G T A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CCTCACAAATAA
BMRVACAAWGGV
A G T C A G T C A C G T A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A
A T G C T G A C C T G A T A C G C G T A A G T C C G T A C G T A C G T A C T A G T C A G T G C A

PH0048.1_Hoxa13/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CCTCACAAATAA-
AAACCTCGTAAAATTT
A C G T A C G T A C G T A G T C A G T C A C G T A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CCTCACAAATAA---
NNCCATAAATCATNN
A G T C A G T C A C G T A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A A C G T A C G T A C G T
C T G A T C A G G A T C G T A C T C G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G C A T G C A T G A C T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CCTCACAAATAA-
-DCYAAAAATAGM
A G T C A G T C A C G T A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A A C G T
A C G T C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C