Information for 1-TAAGAAAATTAT (Motif 2)

A C G T C G T A C G T A A C T G C G T A C G T A C G T A C G T A A C G T A C G T C G T A A C G T
Reverse Opposite:
C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T A G T C A C G T A C G T C G T A
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets7.0 +/- 0.0bp
Average Position of motif in Background75.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PHOX2B/MA0681.2/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--TAAGAAAATTAT--
TTTAATCAAATTATAT
A C G T A C G T A C G T C G T A C G T A A C T G C G T A C G T A C G T A C G T A A C G T A C G T C G T A A C G T A C G T A C G T
C G A T G C A T G C A T C G T A C G T A G C A T G A T C G C T A G C T A C G T A C G A T G C A T C G T A C G A T G C T A G C A T

PROP1/MA0715.1/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TAAGAAAATTAT
TAATTTAATTA-
A C G T C G T A C G T A A C T G C G T A C G T A C G T A C G T A A C G T A C G T C G T A A C G T
G C A T C G T A C T G A G C A T G A C T C G A T G T C A C T G A C G A T G A C T C G T A A C G T

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TAAGAAAATTAT
NTAATBNAATTA-
A C G T A C G T C G T A C G T A A C T G C G T A C G T A C G T A C G T A A C G T A C G T C G T A A C G T
G T A C G C A T C T G A C G T A G A C T A G C T C A T G T G C A C T G A A C G T G A C T C G T A A C G T

PHOX2A/MA0713.1/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TAAGAAAATTAT
TAATTTAATTA-
A C G T C G T A C G T A A C T G C G T A C G T A C G T A C G T A A C G T A C G T C G T A A C G T
G C A T C T G A C T G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A A C G T

Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer

Match Rank:5
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TAAGAAAATTAT
TAATTNAATTAA
A C G T C G T A C G T A A C T G C G T A C G T A C G T A C G T A A C G T A C G T C G T A A C G T
A C G T C G T A C G T A A C G T A G C T A C G T C T G A C G T A A C G T A C G T C G T A G C T A

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TAAGAAAATTAT
YTAATYNRATTA-
A C G T A C G T C G T A C G T A A C T G C G T A C G T A C G T A C G T A A C G T A C G T C G T A A C G T
G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A A C G T

POU3F2/MA0787.1/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TAAGAAAATTAT
TTATGCAAATTA-
A C G T A C G T C G T A C G T A A C T G C G T A C G T A C G T A C G T A A C G T A C G T C G T A A C G T
C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:8
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----TAAGAAAATTAT-
AATGCAATAAAATTTAT
A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G C G T A C G T A C G T A C G T A A C G T A C G T C G T A A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

PH0021.1_Dlx2/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TAAGAAAATTAT---
CTGANNTAATTATNNN
A C G T A C G T C G T A C G T A A C T G C G T A C G T A C G T A C G T A A C G T A C G T C G T A A C G T A C G T A C G T A C G T
T A G C G A C T C A T G C T G A C T A G T A C G G A C T C G T A C G T A C G A T A C G T C T G A G A C T G A C T A G T C A G T C

POU1F1/MA0784.1/Jaspar

Match Rank:10
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TAAGAAAATTAT
AATATGCAAATTAG
A C G T A C G T A C G T C G T A C G T A A C T G C G T A C G T A C G T A C G T A A C G T A C G T C G T A A C G T
C G T A C G T A C G A T C T G A G A C T C A T G A G T C G C T A C G T A G T C A C G A T A C G T C G T A C T A G