Information for 9-GCCACTCATC (Motif 25)

A C T G A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C G T A G T C
Reverse Opposite:
A C T G C G T A A C G T A C T G C G T A A C T G A C G T A C T G A C T G A G T C
p-value:1e-3
log p-value:-7.950e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif16.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets73.0 +/- 0.0bp
Average Position of motif in Background80.7 +/- 84.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX2-2/MA1645.1/Jaspar

Match Rank:1
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--GCCACTCATC--
TAACCACTCAAGAA
A C G T A C G T A C T G A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C G T A G T C A C G T A C G T
G A C T G C T A C G T A T G A C G A T C G C T A G T A C G C A T A T G C G T C A T C G A T C A G G C T A G C T A

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GCCACTCATC
AGCCACTCAAG
A C G T A C T G A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C G T A G T C
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GCCACTCATC
AASCACTCAA-
A C G T A C T G A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C G T A G T C
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T

NKX2-5/MA0063.2/Jaspar

Match Rank:4
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GCCACTCATC-
ACCACTCAAAA
A C T G A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C G T A G T C A C G T
T C G A T G A C G A T C C T G A G A T C G C A T G A T C C G T A G C T A T C G A G C T A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:5
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---GCCACTCATC
SCTGTCAVTCAV-
A C G T A C G T A C G T A C T G A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C G T A G T C
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

MSANTD3/MA1523.1/Jaspar

Match Rank:6
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GCCACTCATC
GTACACTCAC-
A C G T A C T G A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C G T A G T C
A T C G A C G T T G C A G A T C C G T A G A T C G C A T G A T C G T C A G T A C A C G T

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GCCACTCATC
RGGGCACTAACY
A C G T A C G T A C T G A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C G T A G T C
T C G A C A T G C A T G T A C G G T A C T C G A A G T C C A G T C T G A C G T A A G T C G A C T

PKNOX1/MA0782.2/Jaspar

Match Rank:8
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----GCCACTCATC
NNGCTGTCACTCANN
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C G T A G T C
G A C T T C G A A T C G T G A C G C A T C T A G G A C T T A G C G C T A T G A C G A C T A G T C G C T A C G T A G C T A

POL004.1_CCAAT-box/Jaspar

Match Rank:9
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GCCACTCATC
ACTAGCCAATCA--
A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C G T A G T C
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GCCACTCATC
NCTGTCAATCAN-
A C G T A C G T A C G T A C T G A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C G T A G T C
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T