Information for 1-AGCCAACGAG (Motif 5)

C G T A A C T G A G T C A G T C C G T A C G T A A G T C A C T G C G T A A C T G
Reverse Opposite:
A G T C A C G T A G T C A C T G A C G T A C G T A C T G A C T G A G T C A C G T
p-value:1e-3
log p-value:-8.872e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif9.09%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets86.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGCCAACGAG
AGCCAATCGG
C G T A A C T G A G T C A G T C C G T A C G T A A G T C A C T G C G T A A C T G
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFYB/MA0502.2/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--AGCCAACGAG
NTGGCCAATGAG
A C G T A C G T C G T A A C T G A G T C A G T C C G T A C G T A A G T C A C T G C G T A A C T G
A G T C A C G T C T A G T C A G G A T C G T A C G T C A T C G A C G A T T A C G T C G A T A C G

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AGCCAACGAG
CGTGCCAAG---
A C G T A C G T C G T A A C T G A G T C A G T C C G T A C G T A A G T C A C T G C G T A A C T G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---AGCCAACGAG
ACTAGCCAATCA-
A C G T A C G T A C G T C G T A A C T G A G T C A G T C C G T A C G T A A G T C A C T G C G T A A C T G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

NFYA/MA0060.3/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGCCAACGAG-
AACCAATCAGA
C G T A A C T G A G T C A G T C C G T A C G T A A G T C A C T G C G T A A C T G A C G T
T C G A C T G A A G T C G A T C G C T A T C G A G A C T T A G C T C G A T A C G T G C A

NFYC/MA1644.1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGCCAACGAG-
AGCCAATCAGA
C G T A A C T G A G T C A G T C C G T A C G T A A G T C A C T G C G T A A C T G A C G T
T C G A C T A G A G T C G T A C G C T A T C G A G A C T T A G C T C G A T A C G T G C A

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGCCAACGAG
ATGCCAACC--
A C G T C G T A A C T G A G T C A G T C C G T A C G T A A G T C A C T G C G T A A C T G
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGCCAACGAG
BCAGACWA----
A C G T A C G T C G T A A C T G A G T C A G T C C G T A C G T A A G T C A C T G C G T A A C T G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AGCCAACGAG
GGTGCCAAGT--
A C G T A C G T C G T A A C T G A G T C A G T C C G T A C G T A A G T C A C T G C G T A A C T G
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGCCAACGAG
CAGCC------
A C G T C G T A A C T G A G T C A G T C C G T A C G T A A G T C A C T G C G T A A C T G
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T