Information for 14-AAAGTGTCTC (Motif 20)

C G T A C G T A C G T A A C T G A C G T A C T G A C G T A G T C A C G T A G T C
Reverse Opposite:
A C T G C G T A A C T G C G T A A G T C C G T A A G T C A C G T A C G T A C G T
p-value:1e-3
log p-value:-7.492e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif52.2
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets97.0 +/- 0.0bp
Average Position of motif in Background96.6 +/- 80.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AAAGTGTCTC
TTRAGTGSYK-
A C G T C G T A C G T A C G T A A C T G A C G T A C T G A C G T A G T C A C G T A G T C
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T

PB0117.1_Eomes_2/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AAAGTGTCTC---
GCGGAGGTGTCGCCTC
A C G T A C G T A C G T C G T A C G T A C G T A A C T G A C G T A C T G A C G T A G T C A C G T A G T C A C G T A C G T A C G T
T A C G A T C G T C A G C T A G C T G A T A C G A T C G A G C T T C A G C G A T G A T C A C T G T A G C A G T C A G C T T A G C

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AAAGTGTCTC
-AGGTGTCA-
C G T A C G T A C G T A A C T G A C G T A C T G A C G T A G T C A C G T A G T C
A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AAAGTGTCTC
TTAAGTGCTT-
A C G T C G T A C G T A C G T A A C T G A C G T A C T G A C G T A G T C A C G T A G T C
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T

Nkx3-2/MA0122.3/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AAAGTGTCTC-
NTTAAGTGGTTNN
A C G T A C G T C G T A C G T A C G T A A C T G A C G T A C T G A C G T A G T C A C G T A G T C A C G T
C G A T G C A T C G A T C T G A C G T A C A T G C G A T C T A G A C T G G C A T G C A T G C T A G C A T

NKX2-3/MA0672.1/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AAAGTGTCTC
NTCAAGTGGN--
A C G T A C G T C G T A C G T A C G T A A C T G A C G T A C T G A C G T A G T C A C G T A G T C
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AAAGTGTCTC
NTCAAGTGG---
A C G T A C G T C G T A C G T A C G T A A C T G A C G T A C T G A C G T A G T C A C G T A G T C
A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AAAGTGTCTC
TTAAGTGGT--
A C G T C G T A C G T A C G T A A C T G A C G T A C T G A C G T A G T C A C G T A G T C
G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T A C G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:9
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----AAAGTGTCTC-
AATNTTAAGTGGNTNN
A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G T A A C T G A C G T A C T G A C G T A G T C A C G T A G T C A C G T
C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A

PB0165.1_Sox11_2/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AAAGTGTCTC---
AAAATTGTTATGAA
A C G T C G T A C G T A C G T A A C T G A C G T A C T G A C G T A G T C A C G T A G T C A C G T A C G T A C G T
C G T A C T G A C T G A C T G A A C G T G A C T T C A G C G A T G A C T G C T A C A G T T C A G C T G A C G T A