Information for 12-TAAGCTTGGTCA (Motif 12)

A C G T C G T A C G T A A C T G A G T C A C G T A C G T A C T G A C T G A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A G T C A G T C C G T A C G T A A C T G A G T C A C G T A C G T C G T A
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets189.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:TAAGCTTGGTCA
-AAGCTTG----
A C G T C G T A C G T A A C T G A G T C A C G T A C G T A C T G A C T G A C G T A G T C C G T A
A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TAAGCTTGGTCA-
TATAAGTAGGTCAA
A C G T A C G T C G T A C G T A A C T G A G T C A C G T A C G T A C T G A C T G A C G T A G T C C G T A A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:3
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TAAGCTTGGTCA----
-AAWCTAGGTCARDNN
A C G T C G T A C G T A A C T G A G T C A C G T A C G T A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T
A C G T C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.66
Offset:2
Orientation:forward strand
Alignment:TAAGCTTGGTCA
--AAYTAGGTCA
A C G T C G T A C G T A A C T G A G T C A C G T A C G T A C T G A C T G A C G T A G T C C G T A
A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.66
Offset:2
Orientation:forward strand
Alignment:TAAGCTTGGTCA
--AAYTAGGTCA
A C G T C G T A C G T A A C T G A G T C A C G T A C G T A C T G A C T G A C G T A G T C C G T A
A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:6
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TAAGCTTGGTCA-
-WAABTAGGTCAV
A C G T C G T A C G T A A C T G A G T C A C G T A C G T A C T G A C T G A C G T A G T C C G T A A C G T
A C G T C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G

RORC/MA1151.1/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TAAGCTTGGTCA
ATAAGTAGGTCA
A C G T C G T A C G T A A C T G A G T C A C G T A C G T A C T G A C T G A C G T A G T C C G T A
C T G A C G A T G C T A C G T A A C T G A C G T T C G A C A T G C T A G A C G T A G T C C T G A

RORB/MA1150.1/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:forward strand
Alignment:TAAGCTTGGTCA-
--AATTAGGTCAC
A C G T C G T A C G T A A C T G A G T C A C G T A C G T A C T G A C T G A C G T A G T C C G T A A C G T
A C G T A C G T C G T A G C T A C G A T A C G T C T G A A C T G C T A G A G C T G A T C C T G A G A T C

RORA/MA0071.1/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:TAAGCTTGGTCA
--ATCAAGGTCA
A C G T C G T A C G T A A C T G A G T C A C G T A C G T A C T G A C T G A C G T A G T C C G T A
A C G T A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.58
Offset:6
Orientation:forward strand
Alignment:TAAGCTTGGTCA
------AGGTCA
A C G T C G T A C G T A A C T G A G T C A C G T A C G T A C T G A C T G A C G T A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A