Information for 4-GTCAGGGATTAG (Motif 5)

A C T G A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C G T A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A C G T A A C G T A G T C A G T C A G T C A C G T A C T G C G T A A G T C
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.0 +/- 0.0bp
Average Position of motif in Background141.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GSC/MA0648.1/Jaspar

Match Rank:1
Score:0.76
Offset:3
Orientation:reverse strand
Alignment:GTCAGGGATTAG-
---NNGGATTAGN
A C T G A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C G T A C G T C G T A A C T G A C G T
A C G T A C G T A C G T C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C

OTX2/MA0712.2/Jaspar

Match Rank:2
Score:0.76
Offset:2
Orientation:forward strand
Alignment:GTCAGGGATTAG--
--AAGGGATTAGAA
A C T G A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C G T A C G T C G T A A C T G A C G T A C G T
A C G T A C G T G C T A C G T A C T A G C T A G C T A G G T C A C A G T G C A T C G T A C T A G C G T A C G T A

PITX1/MA0682.2/Jaspar

Match Rank:3
Score:0.75
Offset:4
Orientation:reverse strand
Alignment:GTCAGGGATTAG
----NGGATTAN
A C T G A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C G T A C G T C G T A A C T G
A C G T A C G T A C G T A C G T C A T G T C A G C A T G G T C A A C G T A C G T C G T A C T A G

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:4
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:GTCAGGGATTAG-
---VRGGATTARN
A C T G A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C G T A C G T C G T A A C T G A C G T
A C G T A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

PITX2/MA1547.1/Jaspar

Match Rank:5
Score:0.74
Offset:4
Orientation:reverse strand
Alignment:GTCAGGGATTAG
----GGGATTAN
A C T G A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C G T A C G T C G T A A C T G
A C G T A C G T A C G T A C G T A C T G T C A G C T A G G T C A A C G T A G C T C G T A C A G T

PITX3/MA0714.1/Jaspar

Match Rank:6
Score:0.74
Offset:4
Orientation:reverse strand
Alignment:GTCAGGGATTAG-
----GGGATTANN
A C T G A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C G T A C G T C G T A A C T G A C G T
A C G T A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

PH0035.1_Gsc/Jaspar

Match Rank:7
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GTCAGGGATTAG-----
NNAAGGGATTAACGANT
A C T G A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T C G T A G T C A C T G A T A C G C T A G C T A G G T C A A C G T A G C T C G T A C T G A A G T C C A T G C G T A A G C T C G A T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:8
Score:0.73
Offset:4
Orientation:forward strand
Alignment:GTCAGGGATTAG
----RGGATTAR
A C T G A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C G T A C G T C G T A A C T G
A C G T A C G T A C G T A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:9
Score:0.73
Offset:5
Orientation:reverse strand
Alignment:GTCAGGGATTAG-
-----GGATTAGC
A C T G A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C G T A C G T C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

GSC2/MA0891.1/Jaspar

Match Rank:10
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:GTCAGGGATTAG-
---GNGGATTAGN
A C T G A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C G T A C G T C G T A A C T G A C G T
A C G T A C G T A C G T C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G