Information for 11-TGTGTGACACTC (Motif 12)

A C G T A C T G A C G T A C T G A C G T A C T G C G T A A G T C C G T A A G T C A C G T A G T C
Reverse Opposite:
A C T G C G T A A C T G A C G T A C T G A C G T A G T C C G T A A G T C C G T A A G T C C G T A
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets160.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TGTGTGACACTC
TGTCTGDCACCT
A C G T A C T G A C G T A C T G A C G T A C T G C G T A A G T C C G T A A G T C A C G T A G T C
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

PKNOX1/MA0782.2/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TGTGTGACACTC-
TTTGAGTGACAGCTA
A C G T A C G T A C G T A C T G A C G T A C T G A C G T A C T G C G T A A G T C C G T A A G T C A C G T A G T C A C G T
C G A T G C A T C G A T T C A G C T G A A C T G C G A T A T C G C T G A G A T C C G T A A C T G T A G C A G C T C T G A

PBX3/MA1114.1/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TGTGTGACACTC--
GGGTGAGTGACAGGCGG
A C G T A C G T A C G T A C G T A C T G A C G T A C T G A C G T A C T G C G T A A G T C C G T A A G T C A C G T A G T C A C G T A C G T
T A C G A C T G A C T G C G A T T C A G C G T A A C T G C A G T T A C G C T G A T A G C C T G A A C T G T A C G A T G C T C A G A T C G

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TGTGTGACACTC
TGAGTGACAGSC
A C G T A C T G A C G T A C T G A C G T A C T G C G T A A G T C C G T A A G T C A C G T A G T C
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGTGTGACACTC
CTGTCTGTCACCT
A C G T A C G T A C T G A C G T A C T G A C G T A C T G C G T A A G T C C G T A A G T C A C G T A G T C
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGTGTGACACTC
AGGTGTGAAM---
A C G T A C G T A C T G A C G T A C T G A C G T A C T G C G T A A G T C C G T A A G T C A C G T A G T C
C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TGTGTGACACTC
BTGABTGACAGS-
A C G T A C G T A C T G A C G T A C T G A C G T A C T G C G T A A G T C C G T A A G T C A C G T A G T C
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TGTGTGACACTC
NTGATTGACAGN-
A C G T A C G T A C T G A C G T A C T G A C G T A C T G C G T A A G T C C G T A A G T C A C G T A G T C
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T

MGA/MA0801.1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TGTGTGACACTC
AGGTGTGA-----
A C G T A C G T A C T G A C G T A C T G A C G T A C T G C G T A A G T C C G T A A G T C A C G T A G T C
C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A A C G T A C G T A C G T A C G T A C G T

ZNF75D/MA1601.1/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TGTGTGACACTC
ATGTGGGAAA---
A C G T A C G T A C T G A C G T A C T G A C G T A C T G C G T A A G T C C G T A A G T C A C G T A G T C
T C G A C A G T C T A G G A C T T C A G C A T G A T C G G T C A T C G A C T G A A C G T A C G T A C G T