Information for 5-AATAATAAAATA (Motif 5)

C G T A C G T A A C G T C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C G T C G T A
Reverse Opposite:
A C G T C G T A A C G T A C G T A C G T A C G T C G T A A C G T A C G T C G T A A C G T A C G T
p-value:1e-2
log p-value:-6.615e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif125.1
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets149.0 +/- 0.0bp
Average Position of motif in Background105.8 +/- 69.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0075.1_Hoxd10/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--AATAATAAAATA---
AATGCAATAAAATTTAT
A C G T A C G T C G T A C G T A A C G T C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C G T C G T A A C G T A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:2
Score:0.72
Offset:1
Orientation:forward strand
Alignment:AATAATAAAATA
-GTCATAAAAN-
C G T A C G T A A C G T C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C G T C G T A
A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T

HOXB13/MA0901.2/Jaspar

Match Rank:3
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-AATAATAAAATA-
AACCAATAAAATTT
A C G T C G T A C G T A A C G T C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C G T C G T A A C G T
C G T A C G T A G T A C G A T C G C T A C G T A A C G T C G T A G C T A G C T A G C T A G C A T G C A T G C A T

PH0038.1_Hlx/Jaspar

Match Rank:4
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-AATAATAAAATA--
CCATAATTAATTACA
A C G T C G T A C G T A A C G T C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C G T C G T A A C G T A C G T
G T A C G T A C G T C A G A C T G C T A C G T A G A C T G C A T C T G A C T G A G C A T C G A T C T G A G A T C G T C A

HOXA10/MA0899.1/Jaspar

Match Rank:5
Score:0.71
Offset:0
Orientation:forward strand
Alignment:AATAATAAAATA
GGTAATAAAAA-
C G T A C G T A A C G T C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C G T C G T A
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:6
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--AATAATAAAATA--
CTACCAATAAAATTCT
A C G T A C G T C G T A C G T A A C G T C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C G T C G T A A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

PH0046.1_Hoxa10/Jaspar

Match Rank:7
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--AATAATAAAATA--
TAGGTAATAAAATTCA
A C G T A C G T C G T A C G T A A C G T C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C G T C G T A A C G T A C G T
C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A

PH0057.1_Hoxb13/Jaspar

Match Rank:8
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--AATAATAAAATA--
AACCCAATAAAATTCG
A C G T A C G T C G T A C G T A A C G T C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C G T C G T A A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AATAATAAAATA
NCYAATAAAA--
C G T A C G T A A C G T C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C G T C G T A
C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:10
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AATAATAAAATA--
AGAGCCATAAAATTCG
A C G T A C G T C G T A C G T A A C G T C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C G T C G T A A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G