Information for 18-GCCTGGCACACT (Motif 19)

A C T G A G T C A G T C A C G T A C T G A C T G A G T C C G T A A G T C C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G A C G T A C T G A C G T A C T G A G T C A G T C C G T A A C T G A C T G A G T C
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets128.0 +/- 0.0bp
Average Position of motif in Background55.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GCCTGGCACACT
-CCAGGAACAG-
A C T G A G T C A G T C A C G T A C T G A C T G A G T C C G T A A G T C C G T A A G T C A C G T
A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GCCTGGCACACT-----
-CGAAGCACACAAAATA
A C T G A G T C A G T C A C G T A C T G A C T G A G T C C G T A A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCCTGGCACACT
TGTCTGDCACCT-
A C G T A C T G A G T C A G T C A C G T A C T G A C T G A G T C C G T A A G T C C G T A A G T C A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCCTGGCACACT
VGCTGGCA----
A C T G A G T C A G T C A C G T A C T G A C T G A G T C C G T A A G T C C G T A A G T C A C G T
T A G C T A C G A T G C C A G T T C A G T A C G G A T C C T G A A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GCCTGGCACACT
-CTTGGCAA---
A C T G A G T C A G T C A C G T A C T G A C T G A G T C C G T A A G T C C G T A A G T C A C G T
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCCTGGCACACT
CTGTCTGTCACCT-
A C G T A C G T A C T G A G T C A G T C A C G T A C T G A C T G A G T C C G T A A G T C C G T A A G T C A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GCCTGGCACACT
-NTTGGCANN--
A C T G A G T C A G T C A C G T A C T G A C T G A G T C C G T A A G T C C G T A A G T C A C G T
A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

NFIC/MA0161.2/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCCTGGCACACT
TACTTGGCAGA--
A C G T A C T G A G T C A G T C A C G T A C T G A C T G A G T C C G T A A G T C C G T A A G T C A C G T
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A A C G T A C G T

ZBTB12/MA1649.1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCCTGGCACACT
ATCTGGAACCC-
A C T G A G T C A G T C A C G T A C T G A C T G A G T C C G T A A G T C C G T A A G T C A C G T
T C G A A G C T T A G C A G C T T C A G C A T G T G C A C T G A G A T C G T A C A G T C A C G T

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCCTGGCACACT
GGTTGGCAT---
A C T G A G T C A G T C A C G T A C T G A C T G A G T C C G T A A G T C C G T A A G T C A C G T
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T