Information for 2-TGTAGATTTCAT (Motif 3)

A C G T A C T G A C G T C G T A A C T G C G T A A C G T A C G T A C G T A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G C G T A C G T A C G T A A C G T A G T C A C G T C G T A A G T C C G T A
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets161.0 +/- 0.0bp
Average Position of motif in Background84.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXH1/MA0479.1/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TGTAGATTTCAT
TGTGGATTNNN-
A C G T A C T G A C G T C G T A A C T G C G T A A C G T A C G T A C G T A G T C C G T A A C G T
C G A T A C T G A C G T A C T G C A T G C G T A G C A T A C G T A T C G T C A G T C G A A C G T

PB0125.1_Gata3_2/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TGTAGATTTCAT-------
TTTTGTAGATTTTATCGACTTA
A C G T A C G T A C G T A C G T A C T G A C G T C G T A A C T G C G T A A C G T A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T A C G T G C A T C A G T T C A G A G C T G C T A C T A G G C T A G A C T C G A T A C G T G A C T C T G A A C G T G A T C C T A G T C G A A T G C C G A T G C A T G T C A

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TGTAGATTTCAT
NNTGTGGATTSS--
A C G T A C G T A C G T A C T G A C G T C G T A A C T G C G T A A C G T A C G T A C G T A G T C C G T A A C G T
C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G A C G T A C G T

Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:TGTAGATTTCAT----
------TTTCATTRCC
A C G T A C T G A C G T C G T A A C T G C G T A A C G T A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T A G C T G A C T A T G C G C T A A C G T A C G T C T G A A T G C G A T C

NR1I3/MA1534.1/Jaspar

Match Rank:5
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TGTAGATTTCAT
---AAAGTTCAT
A C G T A C T G A C G T C G T A A C T G C G T A A C G T A C G T A C G T A G T C C G T A A C G T
A C G T A C G T A C G T C G T A C T G A C T G A A C T G A C G T C A G T A G T C C T G A G A C T

GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGTAGATTTCAT--------
NDBAGATRWTATCTVNNNNN
A C G T A C T G A C G T C G T A A C T G C G T A A C G T A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C A G T A T G C C G T A A C T G C G T A A C G T T C G A G C T A G A C T C G T A A C G T A G T C C G A T T A C G G C A T A G C T G A T C G A C T G A C T

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:TGTAGATTTCAT----
------TTTCATKGCC
A C G T A C T G A C G T C G T A A C T G C G T A A C G T A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C G T C G A T A G T C G T C A A G C T C A G T C T A G A T G C G A T C

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGTAGATTTCAT--
ATGAATWATTCATGA
A C G T A C G T A C T G A C G T C G T A A C T G C G T A A C G T A C G T A C G T A G T C C G T A A C G T A C G T A C G T
G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A

PB0126.1_Gata5_2/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TGTAGATTTCAT---
GACAGAGATATCAGTGT
A C G T A C G T A C G T A C T G A C G T C G T A A C T G C G T A A C G T A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TGTAGATTTCAT-
---TGGTTTCAGT
A C G T A C T G A C G T C G T A A C T G C G T A A C G T A C G T A C G T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T