Information for 11-GGCAAGTTCTTT (Motif 11)

A C T G A C T G A G T C C G T A C G T A A C T G A C G T A C G T A G T C A C G T A C G T A C G T
Reverse Opposite:
C G T A C G T A C G T A A C T G C G T A C G T A A G T C A C G T A C G T A C T G A G T C A G T C
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets157.0 +/- 0.0bp
Average Position of motif in Background157.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GGCAAGTTCTTT
AAGGCAAGTGT---
A C G T A C G T A C T G A C T G A G T C C G T A C G T A A C T G A C G T A C G T A G T C A C G T A C G T A C G T
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T

NR1I3/MA1534.1/Jaspar

Match Rank:2
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GGCAAGTTCTTT
--AAAGTTCAT-
A C T G A C T G A G T C C G T A C G T A A C T G A C G T A C G T A G T C A C G T A C G T A C G T
A C G T A C G T C G T A C T G A C T G A A C T G A C G T C A G T A G T C C T G A G A C T A C G T

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:3
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GGCAAGTTCTTT---
ACTCCAAGTACTTGGAA
A C G T A C G T A C T G A C T G A G T C C G T A C G T A A C T G A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
T C G A G T A C C G A T A T G C T A G C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A C T G T C A G T G C A G T C A

PH0112.1_Nkx2-3/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GGCAAGTTCTTT---
CNTTAAGTACTTAANG
A C G T A C T G A C T G A G T C C G T A C G T A A C T G A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:5
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GGCAAGTTCTTT
-TTAAGTGCTT-
A C T G A C T G A G T C C G T A C G T A A C T G A C G T A C G T A G T C A C G T A C G T A C G T
A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T

HIF1A/MA1106.1/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GGCAAGTTCTTT
NNGCACGTNC---
A C G T A C T G A C T G A G T C C G T A C G T A A C T G A C G T A C G T A G T C A C G T A C G T A C G T
T A C G T A C G C A T G A G T C T C G A A G T C C T A G G A C T T C G A A T G C A C G T A C G T A C G T

PH0117.1_Nkx3-1/Jaspar

Match Rank:7
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GGCAAGTTCTTT----
TACTAAGTACTTAAATG
A C G T A C T G A C T G A G T C C G T A C G T A A C T G A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

PB0014.1_Esrra_1/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GGCAAGTTCTTT---
TATTCAAGGTCATGCGA
A C G T A C G T A C T G A C T G A G T C C G T A C G T A A C T G A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GGCAAGTTCTTT
GGGAATTTCC--
A C T G A C T G A G T C C G T A C G T A A C T G A C G T A C G T A G T C A C G T A C G T A C G T
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T

ESRRB/MA0141.3/Jaspar

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GGCAAGTTCTTT
-TCAAGGTCATA
A C T G A C T G A G T C C G T A C G T A A C T G A C G T A C G T A G T C A C G T A C G T A C G T
A C G T G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A