Information for 12-CCCAAGCCACTT (Motif 12)

A G T C A G T C A G T C C G T A C G T A A C T G A G T C A G T C C G T A A G T C A C G T A C G T
Reverse Opposite:
C G T A C G T A A C T G A C G T A C T G A C T G A G T C A C G T A C G T A C T G A C T G A C T G
p-value:1e-4
log p-value:-1.034e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets86.0 +/- 0.0bp
Average Position of motif in Background75.1 +/- 62.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0171.1_Nkx2-1/Jaspar

Match Rank:1
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CCCAAGCCACTT------
--TAAGCCACTTGAAATT
A G T C A G T C A G T C C G T A C G T A A C T G A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

PH0115.1_Nkx2-6/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CCCAAGCCACTT------
--TAAGCCACTTAACATT
A G T C A G T C A G T C C G T A C G T A A C T G A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

PH0114.1_Nkx2-5/Jaspar

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CCCAAGCCACTT------
--TAAGCCACTTGAATTT
A G T C A G T C A G T C C G T A C G T A A C T G A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T

PH0113.1_Nkx2-4/Jaspar

Match Rank:4
Score:0.68
Offset:2
Orientation:forward strand
Alignment:CCCAAGCCACTT------
--TAAGCCACTTGAAATT
A G T C A G T C A G T C C G T A C G T A A C T G A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CCCAAGCCACTT------
-CTTAACCACTTAAGGAT
A G T C A G T C A G T C C G T A C G T A A C T G A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:6
Score:0.64
Offset:5
Orientation:forward strand
Alignment:CCCAAGCCACTT---
-----ACCACTTGAA
A G T C A G T C A G T C C G T A C G T A A C T G A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

Nkx3-1/MA0124.2/Jaspar

Match Rank:7
Score:0.64
Offset:5
Orientation:forward strand
Alignment:CCCAAGCCACTT--
-----ACCACTTAA
A G T C A G T C A G T C C G T A C G T A A C T G A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:8
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:CCCAAGCCACTT--
----MRSCACTYAA
A G T C A G T C A G T C C G T A C G T A A C T G A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

ZNF682/MA1599.1/Jaspar

Match Rank:9
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CCCAAGCCACTT-
CGGGCCAAGCCCCTAT
A C G T A C G T A C G T A G T C A G T C A G T C C G T A C G T A A C T G A G T C A G T C C G T A A G T C A C G T A C G T A C G T
A G T C T C A G C T A G T C A G T A G C A G T C T G C A T G C A A C T G A G T C A G T C A T G C G T A C C G A T T C G A A G C T

PH0004.1_Nkx3-2/Jaspar

Match Rank:10
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CCCAAGCCACTT------
-CATAACCACTTAACAAC
A G T C A G T C A G T C C G T A C G T A A C T G A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C