Information for 10-GTGAGGGCTT (Motif 17)

A C T G A C G T A C T G C G T A A C T G A C T G A C T G A G T C A C G T A C G T
Reverse Opposite:
C G T A C G T A A C T G A G T C A G T C A G T C A C G T A G T C C G T A A G T C
p-value:1e-3
log p-value:-6.977e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif87.7
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets162.0 +/- 0.0bp
Average Position of motif in Background85.9 +/- 86.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GTGAGGGCTT
TTAAGTGCTT
A C T G A C G T A C T G C G T A A C T G A C T G A C T G A G T C A C G T A C G T
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GTGAGGGCTT
CTTGAGTGGCT
A C G T A C T G A C G T A C T G C G T A A C T G A C T G A C T G A G T C A C G T A C G T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

ZNF682/MA1599.1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GTGAGGGCTT------
NNAGGGGCTTGGCCNN
A C T G A C G T A C T G C G T A A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T C G A A G C T G C T A C A T G A T C G T C A G C T A G T A G C A C G T A C G T T C A G A T C G A G T C G A T C A G T C T C A G

EGR1/MA0162.4/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GTGAGGGCTT--
GNGCGTGGGCGTGN
A C G T A C G T A C T G A C G T A C T G C G T A A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T
T A C G A C T G T C A G A G T C T A C G A C G T T A C G A T C G T A C G G A T C T C A G A C G T T A C G A C T G

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GTGAGGGCTT-
---NGGGATTA
A C T G A C G T A C T G C G T A A C T G A C T G A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A

Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GTGAGGGCTT
HAWGRGGCCM-
A C G T A C T G A C G T A C T G C G T A A C T G A C T G A C T G A G T C A C G T A C G T
G A C T T C G A C G A T T A C G C T A G T A C G A C T G A T G C G T A C G T A C A C G T

Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer

Match Rank:7
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GTGAGGGCTT
YSTGGGTGGTCT-
A C G T A C G T A C G T A C T G A C G T A C T G C G T A A C T G A C T G A C T G A G T C A C G T A C G T
A G T C A T C G G C A T C A T G A C T G A T C G C G A T C T A G A C T G A G C T T G A C G A C T A C G T

EGR4/MA0733.1/Jaspar

Match Rank:8
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GTGAGGGCTT--
AANTGCGTGGGCGTNN
A C G T A C G T A C G T A C G T A C T G A C G T A C T G C G T A A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T
C G T A C G T A C G T A A C G T T C A G T A G C T C A G C A G T T C A G A C T G T C A G G T A C T C A G C A G T C T G A C T G A

THAP1/MA0597.1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GTGAGGGCTT
-TNNGGGCAG
A C T G A C G T A C T G C G T A A C T G A C T G A C T G A G T C A C G T A C G T
A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GTGAGGGCTT
TTGAGTGSTT
A C T G A C G T A C T G C G T A A C T G A C T G A C T G A G T C A C G T A C G T
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T