Information for 5-TCCACTCAGCTT (Motif 5)

A C G T A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C T G A G T C A C G T A C G T
Reverse Opposite:
C G T A C G T A A C T G A G T C A C G T A C T G C G T A A C T G A C G T A C T G A C T G C G T A
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets186.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX2-2/MA1645.1/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--TCCACTCAGCTT
TAACCACTCAAGAA
A C G T A C G T A C G T A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C T G A G T C A C G T A C G T
G A C T G C T A C G T A T G A C G A T C G C T A G T A C G C A T A T G C G T C A T C G A T C A G G C T A G C T A

MSANTD3/MA1523.1/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TCCACTCAGCTT
GTACACTCAC---
A C G T A C G T A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C T G A G T C A C G T A C G T
A T C G A C G T T G C A G A T C C G T A G A T C G C A T G A T C G T C A G T A C A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TCCACTCAGCTT
AGCCACTCAAG--
A C G T A C G T A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C T G A G T C A C G T A C G T
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TCCACTCAGCTT
MRSCACTYAA---
A C G T A C G T A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C T G A G T C A C G T A C G T
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T

NFYA/MA0060.3/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TCCACTCAGCTT
AACCAATCAGA--
A C G T A C G T A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C T G A G T C A C G T A C G T
T C G A C T G A A G T C G A T C G C T A T C G A G A C T T A G C T C G A T A C G T G C A A C G T A C G T

NFYC/MA1644.1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TCCACTCAGCTT
AGCCAATCAGA--
A C G T A C G T A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C T G A G T C A C G T A C G T
T C G A C T A G A G T C G T A C G C T A T C G A G A C T T A G C T C G A T A C G T G C A A C G T A C G T

ZNF354C/MA0130.1/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TCCACTCAGCTT
ATCCAC-------
A C G T A C G T A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C T G A G T C A C G T A C G T
T G C A G C A T A G T C A G T C C G T A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NKX2-5/MA0063.2/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TCCACTCAGCTT
ACCACTCAAAA-
A C G T A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C T G A G T C A C G T A C G T
T C G A T G A C G A T C C T G A G A T C G C A T G A T C C G T A G C T A T C G A G C T A A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TCCACTCAGCTT
AASCACTCAA---
A C G T A C G T A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C T G A G T C A C G T A C G T
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TCCACTCAGCTT
NSCACTYVAV--
A C G T A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C T G A G T C A C G T A C G T
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T