Information for 8-ACTGCCCCACTT (Motif 8)

C G T A A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T
Reverse Opposite:
C G T A C G T A A C T G A C G T A C T G A C T G A C T G A C T G A G T C C G T A A C T G A C G T
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets118.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:ACTGCCCCACTT-
-BTGACCTAVTTW
C G T A A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T A C G T
A C G T A G T C A C G T T C A G T C G A A G T C A G T C A G C T C T G A T C A G C G A T G C A T G C A T

RORC/MA1151.1/Jaspar

Match Rank:2
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:ACTGCCCCACTT--
--TGACCTANTTAN
C G T A A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G A C T T C A G T G C A G A T C G T A C A G C T T G C A T A G C G C A T C G A T G C T A G A C T

Wt1/MA1627.1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ACTGCCCCACTT
CCCCTCCCCCACAC
A C G T A C G T C G T A A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T
G A T C A G T C G T A C T A G C C A G T A T G C A G T C A G T C G T A C A T G C C T G A A T G C T G C A A G T C

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:4
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--ACTGCCCCACTT-
NNHYTGACCTAGWTT
A C G T A C G T C G T A A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T A C G T
A C G T G A T C G A C T G A T C A C G T A C T G T C G A A G T C A G T C A G C T C T G A T C A G C G A T C G A T G C A T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:ACTGCCCCACTT
--TGACCTARTT
C G T A A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T
A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:6
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:ACTGCCCCACTT
--TGACCTARTT
C G T A A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T
A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:ACTGCCCCACTT
MCTCCCMCRCAB
C G T A A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T
G T A C G A T C C A G T A G T C A G T C A G T C T G C A G A T C C T G A A T G C G T C A A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:8
Score:0.65
Offset:5
Orientation:forward strand
Alignment:ACTGCCCCACTT---
-----ACCACTTGAA
C G T A A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

Nkx3-1/MA0124.2/Jaspar

Match Rank:9
Score:0.63
Offset:5
Orientation:forward strand
Alignment:ACTGCCCCACTT--
-----ACCACTTAA
C G T A A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A

RORA(var.2)/MA0072.1/Jaspar

Match Rank:10
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:ACTGCCCCACTT---
-TTGACCTANTTATN
C G T A A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A