Information for 3-TTCAAGGATGAC (Motif 3)

A C G T A C G T A G T C C G T A C G T A A C T G A C T G C G T A A C G T A C T G C G T A A G T C
Reverse Opposite:
A C T G A C G T A G T C C G T A A C G T A G T C A G T C A C G T A C G T A C T G C G T A C G T A
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets34.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX6/MA0069.1/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TTCAAGGATGAC--
TTCACGCATGAGTT
A C G T A C G T A G T C C G T A C G T A A C T G A C T G C G T A A C G T A C T G C G T A A G T C A C G T A C G T
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T

ZNF136/MA1588.1/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TTCAAGGATGAC
GAATTCTTGGTTGAC
A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C T G C G T A A C G T A C T G C G T A A G T C
T C A G C G T A T C G A C G A T A G C T G A T C A G C T C A G T C T A G C T A G G A C T C A G T C T A G C T G A G T A C

PB0181.1_Spdef_2/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TTCAAGGATGAC---
CTACTAGGATGTNNTN
A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C T G C G T A A C G T A C T G C G T A A G T C A C G T A C G T A C G T
A G T C G C A T C G T A T G A C C G A T T C G A T A C G C A T G C G T A G A C T C T A G G A C T C G A T T C G A G C A T G A T C

PAX1/MA0779.1/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TTCAAGGATGAC-
NGCANTCATGCGTGACG
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C T G C G T A A C G T A C T G C G T A A G T C A C G T
C A G T A C T G G T A C C T G A A T C G A G C T T A G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A G T A C T A C G

PAX9/MA0781.1/Jaspar

Match Rank:5
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TTCAAGGATGAC-
TGCAGTCATGCGTGACG
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C T G C G T A A C G T A C T G C G T A A G T C A C G T
C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G

RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TTCAAGGATGAC
AGGTCAAGGTCA--
A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C T G C G T A A C G T A C T G C G T A A G T C
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T A C G T

STAT1/MA0137.3/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TTCAAGGATGAC
TTTCCAGGAAA--
A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C T G C G T A A C G T A C T G C G T A A G T C
A C G T A G C T A C G T T G A C G A T C C T G A C T A G C A T G C T G A G T C A C T G A A C G T A C G T

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:8
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----TTCAAGGATGAC
NNNCTTTCCAGGAAA--
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C T G C G T A A C G T A C T G C G T A A G T C
G A C T C G A T T C A G G A T C G A C T A G C T A G C T A G T C G A T C C G T A C T A G C T A G T C G A T C G A C T G A A C G T A C G T

STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TTCAAGGATGAC
NTTTCCNGGAAA--
A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C T G C G T A A C G T A C T G C G T A A G T C
T C A G A G C T A C G T A C G T G T A C G A T C C G T A C T A G C A T G G T C A C G T A T C G A A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TTCAAGGATGAC
NTCAAGGTCA--
A C G T A C G T A G T C C G T A C G T A A C T G A C T G C G T A A C G T A C T G C G T A A G T C
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T