Information for 19-GAGATGATAGAC (Motif 21)

A C T G C G T A A C T G C G T A A C G T A C T G C G T A A C G T C G T A A C T G C G T A A G T C
Reverse Opposite:
A C T G A C G T A G T C A C G T C G T A A C G T A G T C C G T A A C G T A G T C A C G T A G T C
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets66.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GAGATGATAGAC--
-AGGTGNCAGACAG
A C T G C G T A A C T G C G T A A C G T A C T G C G T A A C G T C G T A A C T G C G T A A G T C A C G T A C G T
A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GAGATGATAGAC-
-AGGTGHCAGACA
A C T G C G T A A C T G C G T A A C G T A C T G C G T A A C G T C G T A A C T G C G T A A G T C A C G T
A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:3
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GAGATGATAGAC---
---RTGATTKATRGN
A C T G C G T A A C T G C G T A A C G T A C T G C G T A A C G T C G T A A C T G C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C G A T C T A G C G T A A G C T C G A T C A G T C T G A G A C T C T A G C T A G A T G C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GAGATGATAGAC---
---NTGATTGACAGN
A C T G C G T A A C T G C G T A A C G T A C T G C G T A A C G T C G T A A C T G C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:5
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GAGATGATAGAC---
---ATGATKGATGRC
A C T G C G T A A C T G C G T A A C G T A C T G C G T A A C G T C G T A A C T G C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

PB0059.1_Six6_1/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GAGATGATAGAC----
ANANNTGATACCCNATN
A C G T A C T G C G T A A C T G C G T A A C G T A C T G C G T A A C G T C G T A A C T G C G T A A G T C A C G T A C G T A C G T A C G T
C T G A C G A T C G T A G C A T C T G A G A C T C T A G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A C T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GAGATGATAGAC
GGTGYTGACAGS-
A C G T A C T G C G T A A C T G C G T A A C G T A C T G C G T A A C G T C G T A A C T G C G T A A G T C
T C A G A T C G G A C T A C T G G A C T C A G T C T A G C G T A G T A C C G T A C T A G A T C G A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GAGATGATAGAC---
---BTGABTGACAGS
A C T G C G T A A C T G C G T A A C G T A C T G C G T A A C G T C G T A A C T G C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

TCF7L2/MA0523.1/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GAGATGATAGAC-
AAAGATCAAAGGAA
A C G T A C T G C G T A A C T G C G T A A C G T A C T G C G T A A C G T C G T A A C T G C G T A A G T C A C G T
C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A

PH0161.1_Six1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GAGATGATAGAC----
ANNNATGATACCCCATC
A C G T A C T G C G T A A C T G C G T A A C G T A C T G C G T A A C G T C G T A A C T G C G T A A G T C A C G T A C G T A C G T A C G T
G T C A T G C A C G T A G T C A C T G A G A C T C A T G C G T A A G C T G T C A A G T C A T G C A G T C A G T C G C T A C G A T G A T C