Information for 2-AATTTAAATTGC (Motif 4)

C G T A C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C C G T A C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C G T
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets18.0 +/- 0.0bp
Average Position of motif in Background134.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:AATTTAAATTGC
-ATTTGAATT--
C G T A C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C G T A C T G A G T C
A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T

PH0063.1_Hoxb8/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AATTTAAATTGC----
TTTATTAATTGCNNGN
C G T A C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C G T A C T G A G T C A C G T A C G T A C G T A C G T
G C A T G A C T A C G T C T G A C G A T G C A T C G T A C G T A A C G T C A G T C T A G G A T C G T A C T C A G A T C G C G A T

ISL2/MA0914.1/Jaspar

Match Rank:3
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:AATTTAAATTGC
----TTAAGTGC
C G T A C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C G T A C T G A G T C
A C G T A C G T A C G T A C G T G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C

HOXD9/MA0913.2/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AATTTAAATTGC
--NTTTTATTGC
C G T A C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C G T A C T G A G T C
A C G T A C G T C T A G C A G T A C G T C G A T C G A T C G T A A G C T C A G T T C A G A G T C

Hmx1/MA0896.1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AATTTAAATTGC----
ANNCATTAATTGCTNGN
A C G T C G T A C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C G T A C T G A G T C A C G T A C G T A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AATTTAAATTGC----
ANNCATTAATTGCTNGN
A C G T C G T A C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C G T A C T G A G T C A C G T A C G T A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

PROP1/MA0715.1/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AATTTAAATTGC
TAATTTAATTA--
A C G T C G T A C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C G T A C T G A G T C
G C A T C G T A C T G A G C A T G A C T C G A T G T C A C T G A C G A T G A C T C G T A A C G T A C G T

Hmx3/MA0898.1/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AATTTAAATTGC----
ATTNNTTAATTGCTTGT
A C G T C G T A C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C G T A C T G A G T C A C G T A C G T A C G T A C G T
G C T A G C A T A G C T A G T C C G A T G C A T G C A T C T G A C G T A C A G T G A C T C T A G G A T C A G C T A C G T T A C G A C G T

PH0043.1_Hmx3/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AATTTAAATTGC----
ATTNNTTAATTGCTTGT
A C G T C G T A C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C G T A C T G A G T C A C G T A C G T A C G T A C G T
G C T A G C A T A G C T A G T C C G A T G C A T G C A T C T G A C G T A C A G T G A C T C T A G G A T C A G C T A C G T T A C G A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:10
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:AATTTAAATTGC-
---TTTAATTGCN
C G T A C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C G T A C T G A G T C A C G T
A C G T A C G T A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C