Information for 6-CAAGGTACATAG (Motif 6)

A G T C C G T A C G T A A C T G A C T G A C G T C G T A A G T C C G T A A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A A C G T A C T G A C G T C G T A A G T C A G T C A C G T A C G T A C T G
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets75.0 +/- 0.0bp
Average Position of motif in Background110.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4A/MA0114.4/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CAAGGTACATAG
TCCAAAGTCCAAA-
A C G T A C G T A G T C C G T A C G T A A C T G A C T G A C G T C G T A A G T C C G T A A C G T C G T A A C T G
C A G T G A T C G A T C T G C A T C G A C T G A A C T G C A G T G A T C G A T C C G T A C T G A C T G A A C G T

HNF4G/MA0484.2/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CAAGGTACATAG
TCCAAAGTCCAGA-
A C G T A C G T A G T C C G T A C G T A A C T G A C T G A C G T C G T A A G T C C G T A A C G T C G T A A C T G
C A G T A G T C G A T C T C G A T C G A C T G A A C T G C A G T G A T C G A T C C G T A T C A G C T G A A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CAAGGTACATAG
CCAGGAACAG--
A G T C C G T A C G T A A C T G A C T G A C G T C G T A A G T C C G T A A C G T C G T A A C T G
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CAAGGTACATAG
-WAAGTAAAYA-
A G T C C G T A C G T A A C T G A C T G A C G T C G T A A G T C C G T A A C G T C G T A A C T G
A C G T G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:5
Score:0.58
Offset:-7
Orientation:forward strand
Alignment:-------CAAGGTACATAG
CANAGNNCAAAGTCCA---
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C T G A C G T C G T A A G T C C G T A A C G T C G T A A C T G
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T

PH0117.1_Nkx3-1/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CAAGGTACATAG---
TACTAAGTACTTAAATG
A C G T A C G T A G T C C G T A C G T A A C T G A C T G A C G T C G T A A G T C C G T A A C G T C G T A A C T G A C G T A C G T A C G T
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CAAGGTACATAG--
NCWRWGTAAACANSV
A C G T A G T C C G T A C G T A A C T G A C T G A C G T C G T A A G T C C G T A A C G T C G T A A C T G A C G T A C G T
T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CAAGGTACATAG-
TGCCAAAATAAACANN
A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C T G A C G T C G T A A G T C C G T A A C G T C G T A A C T G A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CAAGGTACATAG
-AAAGTAAACA-
A G T C C G T A C G T A A C T G A C T G A C G T C G T A A G T C C G T A A C G T C G T A A C T G
A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T

Dmrt1/MA1603.1/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CAAGGTACATAG----
---GATACAAAGTATC
A G T C C G T A C G T A A C T G A C T G A C G T C G T A A G T C C G T A A C G T C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G G C T A G C A T C G T A G A T C G C T A G C T A C G T A C T A G C G A T C G T A C G A T G T A C