Homer de novo Motif Results (motif_results/SRR11563608_amplicon6_ecDNA_1//)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 2
Total background sequences = 54000
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 * A G T C C G T A A G T C C G T A A G T C A C T G A C T G A C G T A C G T A C T G 1e-4-1.072e+0150.00%0.00%0.0bp (0.0bp)MXI1/MA1108.2/Jaspar(0.613)
More Information | Similar Motifs Found
motif file (matrix)
2 * A C G T A C T G A G T C A C G T A C G T C G T A A G T C A G T C A C G T A C G T A G T C A G T C 1e-4-1.072e+0150.00%0.00%0.0bp (0.0bp)SD0001.1_at_AC_acceptor/Jaspar(0.724)
More Information | Similar Motifs Found
motif file (matrix)
3 * C G T A A C G T A C T G A C T G A C G T A G T C C G T A C G T A A C T G A G T C A C G T C G T A 1e-4-1.072e+0150.00%0.00%0.0bp (0.0bp)PAX5/MA0014.3/Jaspar(0.671)
More Information | Similar Motifs Found
motif file (matrix)
4 * C G T A A C T G A G T C A G T C C G T A C G T A A C T G A C G T A C G T C G T A A C G T A C T G 1e-4-1.072e+0150.00%0.00%0.0bp (0.0bp)NFIC/MA0161.2/Jaspar(0.637)
More Information | Similar Motifs Found
motif file (matrix)
5 * A G T C A C G T A C T G A C T G A C T G C G T A A C G T A G T C A C G T A C G T A C T G A G T C 1e-4-1.072e+0150.00%0.00%0.0bp (0.0bp)TEAD1/MA0090.3/Jaspar(0.593)
More Information | Similar Motifs Found
motif file (matrix)
6 * C G T A A C T G A G T C A C G T C G T A A C T G A C T G A C T G A C T G C G T A A C G T A C T G 1e-4-1.072e+0150.00%0.00%0.0bp (0.0bp)Znf281/MA1630.1/Jaspar(0.663)
More Information | Similar Motifs Found
motif file (matrix)
7 * C G T A A C T G A C G T A G T C A C G T A G T C A C G T A C G T A C T G A C T G A C G T A C G T 1e-4-1.072e+0150.00%0.00%0.0bp (0.0bp)SOX10/MA0442.2/Jaspar(0.592)
More Information | Similar Motifs Found
motif file (matrix)
8 * A C G T A C G T A G T C A G T C A G T C C G T A C G T A A C T G A G T C A G T C A C G T A G T C 1e-4-1.072e+0150.00%0.00%0.0bp (0.0bp)Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer(0.694)
More Information | Similar Motifs Found
motif file (matrix)
9 * C G T A A C T G A G T C A C G T A C T G A C G T C G T A A C T G A C G T C G T A A G T C A C G T 1e-4-1.072e+0150.00%0.00%0.0bp (0.0bp)ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer(0.603)
More Information | Similar Motifs Found
motif file (matrix)
10 * C G T A A C T G A C T G A G T C A C G T A G T C C G T A A G T C C G T A A G T C C G T A A G T C 1e-4-1.072e+0150.00%0.00%0.0bp (0.0bp)PB0130.1_Gm397_2/Jaspar(0.668)
More Information | Similar Motifs Found
motif file (matrix)
11 * A C T G A C T G A C G T A C G T A C T G A C T G A G T C A C G T C G T A A C G T A C T G A C T G 1e-4-1.072e+0150.00%0.00%0.0bp (0.0bp)RFX3/MA0798.2/Jaspar(0.607)
More Information | Similar Motifs Found
motif file (matrix)
12 * C G T A C G T A A C G T A C T G A C G T C G T A A G T C A C G T A C G T A C G T A C T G A C T G 1e-4-1.072e+0150.00%0.00%0.0bp (0.0bp)HNF4A/MA0114.4/Jaspar(0.746)
More Information | Similar Motifs Found
motif file (matrix)
13 * A G T C C G T A A G T C A C G T A G T C C G T A C G T A A C T G A G T C C G T A A G T C A C G T 1e-4-1.072e+0150.00%0.00%0.0bp (0.0bp)NKX2-5/MA0063.2/Jaspar(0.757)
More Information | Similar Motifs Found
motif file (matrix)
14 * A G T C A C G T C G T A C G T A A G T C C G T A A C G T A G T C A G T C C G T A A G T C A G T C 1e-4-1.072e+0150.00%0.00%0.0bp (0.0bp)ZNF354C/MA0130.1/Jaspar(0.656)
More Information | Similar Motifs Found
motif file (matrix)
15 * A G T C C G T A A C G T A G T C A G T C C G T A A C G T A G T C A G T C A C G T A C G T C G T A 1e-4-1.072e+0150.00%0.00%0.0bp (0.0bp)HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer(0.706)
More Information | Similar Motifs Found
motif file (matrix)
16 * C G T A C G T A A G T C C G T A A C T G A G T C C G T A A G T C C G T A C G T A A G T C A C G T 1e-4-1.072e+0150.00%0.00%0.0bp (0.0bp)ZNF317/MA1593.1/Jaspar(0.646)
More Information | Similar Motifs Found
motif file (matrix)
17 * A C T G A C G T C G T A A C T G A C G T A C G T C G T A A C G T A C G T C G T A A C G T A C T G 1e-4-1.072e+0150.00%0.00%0.0bp (0.0bp)PH0055.1_Hoxa7_2/Jaspar(0.618)
More Information | Similar Motifs Found
motif file (matrix)
18 * C G T A A C G T A C T G A G T C C G T A A C T G C G T A C G T A A G T C A C G T A C G T A C G T 1e-4-1.072e+0150.00%0.00%0.0bp (0.0bp)PH0148.1_Pou3f3/Jaspar(0.638)
More Information | Similar Motifs Found
motif file (matrix)
19 * A C G T A C T G A C T G C G T A A G T C A C G T A C G T A G T C A C G T A C T G A C T G C G T A 1e-4-1.072e+0150.00%0.00%0.0bp (0.0bp)ZBTB26/MA1579.1/Jaspar(0.720)
More Information | Similar Motifs Found
motif file (matrix)
20 * A C T G C G T A C G T A A C T G A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C T G 1e-4-1.072e+0150.00%0.00%0.0bp (0.0bp)HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer(0.645)
More Information | Similar Motifs Found
motif file (matrix)
21 * A G T C A C G T A C G T A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C 1e-4-1.072e+0150.00%0.00%0.0bp (0.0bp)PB0126.1_Gata5_2/Jaspar(0.575)
More Information | Similar Motifs Found
motif file (matrix)
22 * A G T C C G T A A C G T A C G T A C T G A C G T A C G T A C G T A C T G A C T G A C T G A C T G 1e-4-1.072e+0150.00%0.00%0.0bp (0.0bp)SOX14/MA1562.1/Jaspar(0.765)
More Information | Similar Motifs Found
motif file (matrix)
23 * A G T C A C G T A G T C A C G T C G T A C G T A C G T A A C G T C G T A A C G T A G T C A C G T 1e-4-1.072e+0150.00%0.00%0.0bp (0.0bp)MEF2B/MA0660.1/Jaspar(0.651)
More Information | Similar Motifs Found
motif file (matrix)
24 * A C G T A C G T A C G T C G T A A G T C C G T A A C G T A C T G A C G T C G T A A C T G A C T G 1e-4-1.072e+0150.00%0.00%0.0bp (0.0bp)PH0085.1_Irx4/Jaspar(0.813)
More Information | Similar Motifs Found
motif file (matrix)
25 * A C G T C G T A A G T C A C G T C G T A A C T G A C T G A G T C A C G T A G T C 1e-3-9.113e+0050.00%0.01%0.0bp (36.7bp)PB0181.1_Spdef_2/Jaspar(0.619)
More Information | Similar Motifs Found
motif file (matrix)
26 * A C G T A C T G A C T G A C G T C G T A A G T C C G T A A G T C A C G T A G T C 1e-3-9.113e+0050.00%0.01%0.0bp (71.3bp)PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer(0.735)
More Information | Similar Motifs Found
motif file (matrix)
27 * A C T G C G T A A C G T A G T C C G T A A G T C A C G T C G T A A C G T A G T C 1e-3-8.525e+0050.00%0.01%0.0bp (54.5bp)GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer(0.766)
More Information | Similar Motifs Found
motif file (matrix)
28 * A C G T A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A A C G T 1e-3-8.525e+0050.00%0.01%0.0bp (45.4bp)RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer(0.674)
More Information | Similar Motifs Found
motif file (matrix)
29 * A C G T A G T C C G T A C G T A A C G T A G T C A G T C C G T A A C T G A G T C 1e-3-8.237e+0050.00%0.01%0.0bp (83.0bp)PBX1/MA0070.1/Jaspar(0.668)
More Information | Similar Motifs Found
motif file (matrix)
30 * A C T G A C T G A C T G A C T G A G T C A G T C A C G T A G T C A C G T C G T A 1e-3-7.832e+0050.00%0.02%0.0bp (86.3bp)PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer(0.708)
More Information | Similar Motifs Found
motif file (matrix)
31 * A C T G A C T G C G T A A G T C A C G T A G T C A C G T A C G T C G T A A C G T 1e-3-7.778e+0050.00%0.02%0.0bp (80.6bp)MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer(0.752)
More Information | Similar Motifs Found
motif file (matrix)
32 * A C G T C G T A A G T C C G T A A C G T A C G T A C T G A G T C C G T A A G T C 1e-3-7.355e+0050.00%0.03%0.0bp (64.4bp)TEAD4/MA0809.2/Jaspar(0.712)
More Information | Similar Motifs Found
motif file (matrix)
33 * A C T G A G T C C G T A A G T C A C G T A C T G C G T A A G T C A C G T A C G T 1e-3-7.321e+0050.00%0.03%0.0bp (65.2bp)ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer(0.700)
More Information | Similar Motifs Found
motif file (matrix)