Information for 6-GACACAGCTTGA (Motif 12)

A C T G C G T A A G T C C G T A A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A C G T A A C T G A G T C A C G T A C T G A C G T A C T G A C G T A G T C
p-value:1e-3
log p-value:-8.872e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif9.09%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets18.0 +/- 0.0bp
Average Position of motif in Background151.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-GACACAGCTTGA--
GAGCACAGCAGGACA
A C G T A C T G C G T A A G T C C G T A A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GACACAGCTTGA--
CCACACAGCAGGAGA
A C G T A C T G C G T A A G T C C G T A A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GACACAGCTTGA--
CCACACAGCAGGAGA
A C G T A C T G C G T A A G T C C G T A A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PRDM4/MA1647.1/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GACACAGCTTGA
NAGAAACAGNN---
A C G T A C G T A C T G C G T A A G T C C G T A A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A
C G A T C G T A C A T G C G T A T C G A C G T A A G T C G C T A A T C G G T C A G A T C A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GACACAGCTTGA
-DCTCAGCAGG-
A C T G C G T A A G T C C G T A A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A
A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GACACAGCTTGA
--CACAGN----
A C T G C G T A A G T C C G T A A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A
A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GACACAGCTTGA
-NAACAGCTGG-
A C T G C G T A A G T C C G T A A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A
A C G T C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G A C G T

BACH1/MA1633.1/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GACACAGCTTGA
GATGACTCAGCAA--
A C G T A C G T A C G T A C T G C G T A A G T C C G T A A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A
A T C G T C G A A G C T A C T G T G C A T A G C C G A T G T A C C T G A A C T G T A G C G C T A G C T A A C G T A C G T

Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GACACAGCTTGA--
--CHCAGCRGGRGG
A C T G C G T A A G T C C G T A A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A A C G T A C G T
A C G T A C G T T G A C G T C A A G T C G C T A C T A G A G T C C T G A C A T G A C T G C T A G T A C G T C A G

MAFK/MA0496.3/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GACACAGCTTGA
TGCTGACTCAGCAAT-
A C G T A C G T A C G T A C G T A C T G C G T A A G T C C G T A A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A
G C A T T A C G T G A C G C A T A C T G T G C A A T G C G C A T G T A C C G T A A C T G T A G C G T C A G C T A G C A T A C G T