Information for 20-CCATTATAAG (Motif 32)

A G T C A G T C C G T A A C G T A C G T C G T A A C G T C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T C G T A A C G T C G T A C G T A A C G T A C T G A C T G
p-value:1e-3
log p-value:-7.409e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif25.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets25.0 +/- 0.0bp
Average Position of motif in Background74.1 +/- 108.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX6-3/MA1530.1/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CCATTATAAG
CTCATTAAA--
A C G T A G T C A G T C C G T A A C G T A C G T C G T A A C G T C G T A C G T A A C T G
T A G C A G C T A G T C C G T A A C G T A G C T C T G A G C T A G C T A A C G T A C G T

PB0079.1_Sry_1/Jaspar

Match Rank:2
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CCATTATAAG----
NANTATTATAATTNNN
A C G T A C G T A G T C A G T C C G T A A C G T A C G T C G T A A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C T G G C T A G C T A G A C T C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T G T C A C G A T T G C A

Isl1/MA1608.1/Jaspar

Match Rank:3
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CCATTATAAG
ATCCATTAGCA-
A C G T A C G T A G T C A G T C C G T A A C G T A C G T C G T A A C G T C G T A C G T A A C T G
C T G A A C G T G A T C G T A C C T G A G C A T G A C T G C T A C T A G A G T C T G C A A C G T

PB0174.1_Sox30_2/Jaspar

Match Rank:4
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CCATTATAAG----
TAAGATTATAATACGG
A C G T A C G T A G T C A G T C C G T A A C G T A C G T C G T A A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T
G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G

SOX2/MA0143.4/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CCATTATAAG
NNCCATTGTNN-
A C G T A C G T A G T C A G T C C G T A A C G T A C G T C G T A A C G T C G T A C G T A A C T G
C G A T G C A T G A T C G A T C G C T A A G C T C G A T C T A G C G A T G C A T G C A T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:6
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CCATTATAAG
YCATTAMC--
A G T C A G T C C G T A A C G T A C G T C G T A A C G T C G T A C G T A A C T G
A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C A C G T A C G T

BARX1/MA0875.1/Jaspar

Match Rank:7
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CCATTATAAG
GCAATTAG---
A C G T A G T C A G T C C G T A A C G T A C G T C G T A A C G T C G T A C G T A A C T G
T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G A C G T A C G T A C G T

PB0069.1_Sox21_1/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CCATTATAAG----
TTTAATTATAATTAAG
A C G T A C G T A G T C A G T C C G T A A C G T A C G T C G T A A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T
G A C T G C A T G A C T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C A T G

PB0064.1_Sox14_1/Jaspar

Match Rank:9
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCATTATAAG----
GCTAATTATAATTATC
A C G T A C G T A G T C A G T C C G T A A C G T A C G T C G T A A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T
C A T G G A T C G A C T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C A G T G T A C

BSX/MA0876.1/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCATTATAAG
CCAATTAA---
A C G T A G T C A G T C C G T A A C G T A C G T C G T A A C G T C G T A C G T A A C T G
T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A A C G T A C G T A C G T