Information for 5-CCTGTTTCTCAT (Motif 4)

A G T C A G T C A C G T A C T G A C G T A C G T A C G T A G T C A C G T A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G C G T A A C T G C G T A C G T A C G T A A G T C C G T A A C T G A C T G
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets122.0 +/- 0.0bp
Average Position of motif in Background191.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM4/MA1647.1/Jaspar

Match Rank:1
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-CCTGTTTCTCAT
GTCTGTTTCTA--
A C G T A G T C A G T C A C G T A C T G A C G T A C G T A C G T A G T C A C G T A G T C C G T A A C G T
C T A G C A G T T A G C C G A T T C A G G C A T A G C T G C A T G T A C G C A T G C T A A C G T A C G T

PBX3/MA1114.1/Jaspar

Match Rank:2
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CCTGTTTCTCAT--
NNNCCTGTCACTCANNN
A C G T A C G T A C G T A G T C A G T C A C G T A C T G A C G T A C G T A C G T A G T C A C G T A G T C C G T A A C G T A C G T A C G T
T A G C A G T C T A C G A T G C T G A C G A C T A T C G G A C T A T G C G T C A T G A C G C A T A G T C G C T A T G A C T G A C A T G C

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CCTGTTTCTCAT
GSCTGTCACTCA-
A C G T A G T C A G T C A C G T A C T G A C G T A C G T A C G T A G T C A C G T A G T C C G T A A C G T
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T

PRDM1/MA0508.3/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CCTGTTTCTCAT
-TTCTTTCTCTT
A G T C A G T C A C G T A C T G A C G T A C G T A C G T A G T C A C G T A G T C C G T A A C G T
A C G T G A C T G C A T G T A C C G A T G C A T C G A T G T A C C G A T G T A C G A C T G A C T

SCRT2/MA0744.2/Jaspar

Match Rank:5
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----CCTGTTTCTCAT
NNNCACCTGTTGCTNN-
A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C T G A C G T A C G T A C G T A G T C A C G T A G T C C G T A A C G T
C G T A C T G A G T A C G T A C C T G A G T A C G A T C C G A T A T C G G A C T C A G T C T A G T G A C G C A T A G C T G A C T A C G T

GRHL2/MA1105.2/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CCTGTTTCTCAT
NAAACCTGTTTN----
A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C T G A C G T A C G T A C G T A G T C A C G T A G T C C G T A A C G T
G T C A T C G A C T G A C T G A A T G C G A T C C G A T A T C G G A C T G A C T A G C T A C G T A C G T A C G T A C G T A C G T

PKNOX1/MA0782.2/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCTGTTTCTCAT-
NNGCTGTCACTCANN
A C G T A C G T A G T C A G T C A C G T A C T G A C G T A C G T A C G T A G T C A C G T A G T C C G T A A C G T A C G T
G A C T T C G A A T C G T G A C G C A T C T A G G A C T T A G C G C T A T G A C G A C T A G T C G C T A C G T A G C T A

IKZF1/MA1508.1/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CCTGTTTCTCAT
NCTTCCTGTTNN----
A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C T G A C G T A C G T A C G T A G T C A C G T A G T C C G T A A C G T
T C G A A G T C G C A T A G C T A G T C G A T C G C A T A T C G A G C T A C G T A G C T A G T C A C G T A C G T A C G T A C G T

PB0148.1_Mtf1_2/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CCTGTTTCTCAT--
NNTTTTTCTTATNT
A G T C A G T C A C G T A C T G A C G T A C G T A C G T A G T C A C G T A G T C C G T A A C G T A C G T A C G T
A C T G G C A T A C G T C G A T C G A T C G A T C A G T G T A C C G A T C G A T G T C A C G A T G C A T C A G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCTGTTTCTCAT
NCTGTCAATCAN
A G T C A G T C A C G T A C T G A C G T A C G T A C G T A G T C A C G T A G T C C G T A A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A