Information for 21-TCCCTTTATTCC (Motif 20)

A C G T A G T C A G T C A G T C A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A C G T A A C G T C G T A C G T A C G T A A C T G A C T G A C T G C G T A
p-value:1e-4
log p-value:-1.122e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.69
Offset:2
Orientation:forward strand
Alignment:TCCCTTTATTCC
--YCTTTGTTCC
A C G T A G T C A G T C A G T C A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

CDX2/MA0465.2/Jaspar

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TCCCTTTATTCC--
--NTTTTATTGCNN
A C G T A G T C A G T C A G T C A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C A C G T A C G T
A C G T A C G T C G A T G C A T C G A T G C A T G C A T T C G A G A C T C A G T C T A G G A T C G C A T G A C T

Sox3/MA0514.1/Jaspar

Match Rank:3
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TCCCTTTATTCC
--CCTTTGTTTT
A C G T A G T C A G T C A G T C A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C
A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

SOX4/MA0867.2/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TCCCTTTATTCC
-NCCTTTGTTC-
A C G T A G T C A G T C A G T C A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C
A C G T A G T C A G T C G A T C C G A T A G C T A G C T T A C G C G A T A G C T G A T C A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TCCCTTTATTCC
-NCCATTGTTC-
A C G T A G T C A G T C A G T C A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C
A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TCCCTTTATTCC---
TNNTCCTTTGTTCTNNT
A C G T A C G T A C G T A G T C A G T C A G T C A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

PB0061.1_Sox11_1/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TCCCTTTATTCC---
NNNTCCTTTGTTCTNNN
A C G T A C G T A C G T A G T C A G T C A G T C A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

CDX4/MA1473.1/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TCCCTTTATTCC-
--GTTTTATTGCC
A C G T A G T C A G T C A G T C A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C A C G T
A C G T A C G T T C A G C A G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G T C G T A C

SOX10/MA0442.2/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TCCCTTTATTCC
-NNCTTTGTTNN
A C G T A G T C A G T C A G T C A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C
A C G T A C G T A G C T T G A C C G A T C G A T C G A T T C A G C G A T A C G T G A C T G A C T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:10
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TCCCTTTATTCC
--NTTTTATGAC
A C G T A G T C A G T C A G T C A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C
A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C