Information for 1-AAGTCGACAA (Motif 1)

C G T A C G T A A C T G A C G T A G T C A C T G C G T A A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G A C G T A G T C A C T G C G T A A G T C A C G T A C G T
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets136.0 +/- 0.0bp
Average Position of motif in Background33.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0136.1_IRC900814_2/Jaspar

Match Rank:1
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----AAGTCGACAA-
ATGGAAAGTCGTAAAA
A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A C G T A G T C A C T G C G T A A G T C C G T A C G T A A C G T
C T G A A G C T A C T G C T A G C T G A T C G A G T C A A C T G G A C T A G T C C A T G A C G T C T G A C G T A T C G A G C T A

Nr2e1/MA0676.1/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AAGTCGACAA
AAAAGTCAA---
A C G T A C G T C G T A C G T A A C T G A C G T A G T C A C T G C G T A A G T C C G T A C G T A
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T

FOXC2/MA0846.1/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AAGTCGACAA-
TAAGTAAACAAA
A C G T C G T A C G T A A C T G A C G T A G T C A C T G C G T A A G T C C G T A C G T A A C G T
G C A T C T G A G C T A T C A G G A C T G T C A G T C A C T G A A G T C C T G A G C T A G C T A

PH0047.1_Hoxa11/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AAGTCGACAA----
TAAAGTCGTAAAACAT
A C G T A C G T C G T A C G T A A C T G A C G T A G T C A C T G C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AAGTCGACAA-
TATGTAAACANG
A C G T C G T A C G T A A C T G A C G T A G T C A C T G C G T A A G T C C G T A C G T A A C G T
G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G

PB0015.1_Foxa2_1/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AAGTCGACAA----
AAAAAGTAAACAAAGAC
A C G T A C G T A C G T C G T A C G T A A C T G A C G T A G T C A C T G C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T
G C T A C G T A G C T A C G T A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A G C T A C G T A T A C G C T G A A G T C

PH0066.1_Hoxc11/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AAGTCGACAA----
TAAAGTCGTAAAATAG
A C G T A C G T C G T A C G T A A C T G A C G T A G T C A C T G C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

ONECUT2/MA0756.1/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AAGTCGACAA-
AAAAAATCGATAAT
A C G T A C G T A C G T C G T A C G T A A C T G A C G T A G T C A C T G C G T A A G T C C G T A C G T A A C G T
T C G A C T G A C G T A G C T A C T G A C T G A A C G T G T A C T C A G G C T A G C A T C G T A G C T A G C A T

Foxj3/MA0851.1/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AAGTCGACAA----
AAAAAGTAAACAAACAC
A C G T A C G T A C G T C G T A C G T A A C T G A C G T A G T C A C T G C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C

PB0017.1_Foxj3_1/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AAGTCGACAA----
AAAAAGTAAACAAACAC
A C G T A C G T A C G T C G T A C G T A A C T G A C G T A G T C A C T G C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C