Information for 3-GTCTCAACTGGC (Motif 4)

A C T G A C G T A G T C A C G T A G T C C G T A C G T A A G T C A C G T A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C C G T A A C T G A C G T A C G T A C T G C G T A A C T G C G T A A G T C
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets36.0 +/- 0.0bp
Average Position of motif in Background193.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MYB/MA0100.3/Jaspar

Match Rank:1
Score:0.70
Offset:2
Orientation:forward strand
Alignment:GTCTCAACTGGC
--ACCAACTGTC
A C T G A C G T A G T C A C G T A G T C C G T A C G T A A G T C A C G T A C T G A C T G A G T C
A C G T A C G T G T C A A G T C A G T C C T G A G C T A A G T C A C G T T C A G G A C T G T A C

PH0111.1_Nkx2-2/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GTCTCAACTGGC---
NANTTTCAAGTGGTTAN
A C G T A C G T A C T G A C G T A G T C A C G T A G T C C G T A C G T A A G T C A C G T A C T G A C T G A G T C A C G T A C G T A C G T
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:3
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GTCTCAACTGGC-
---CCAACTGCCA
A C T G A C G T A G T C A C G T A G T C C G T A C G T A A G T C A C G T A C T G A C T G A G T C A C G T
A C G T A C G T A C G T A G T C G A T C C G T A C G T A A G T C A C G T A C T G G A T C G A T C C T G A

PB0149.1_Myb_2/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GTCTCAACTGGC----
CGACCAACTGCCATGC
A C T G A C G T A G T C A C G T A G T C C G T A C G T A A G T C A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A G T C C A T G G T C A A G T C G A T C C G T A G T C A A G T C A G C T T C A G G A T C G A T C C T G A A G C T A T C G A G T C

PB0150.1_Mybl1_2/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GTCTCAACTGGC---
CGACCAACTGCCGTG
A C T G A C G T A G T C A C G T A G T C C G T A C G T A A G T C A C G T A C T G A C T G A G T C A C G T A C G T A C G T
A G T C A T C G T G C A G A T C G A T C G C T A G T C A A G T C A G C T A C T G G A T C G T A C C T A G G C A T A C T G

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:6
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GTCTCAACTGGC
----YAACBGCC
A C T G A C G T A G T C A C G T A G T C C G T A C G T A A G T C A C G T A C T G A C T G A G T C
A C G T A C G T A C G T A C G T A G C T C G T A C G T A A G T C A G T C A C T G G A T C G A T C

PH0171.1_Nkx2-1/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GTCTCAACTGGC---
AANTTCAAGTGGCTTN
A C G T A C T G A C G T A G T C A C G T A G T C C G T A C G T A A G T C A C G T A C T G A C T G A G T C A C G T A C G T A C G T
C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A

PH0113.1_Nkx2-4/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GTCTCAACTGGC---
AATTTCAAGTGGCTTN
A C G T A C T G A C G T A G T C A C G T A G T C C G T A C G T A A G T C A C G T A C T G A C T G A G T C A C G T A C G T A C G T
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A

PH0114.1_Nkx2-5/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GTCTCAACTGGC---
AAATTCAAGTGGNTTN
A C G T A C T G A C G T A G T C A C G T A G T C C G T A C G T A A G T C A C G T A C T G A C T G A G T C A C G T A C G T A C G T
C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A

NKX2-3/MA0672.1/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GTCTCAACTGGC
--NTCAAGTGGN
A C T G A C G T A G T C A C G T A G T C C G T A C G T A A G T C A C G T A C T G A C T G A G T C
A C G T A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T