Information for 3-GCAACTAATG (Motif 6)

A C T G A G T C C G T A C G T A A G T C A C G T C G T A C G T A A C G T A C T G
Reverse Opposite:
A G T C C G T A A C G T A C G T C G T A A C T G A C G T A C G T A C T G A G T C
p-value:1e-3
log p-value:-8.076e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif29.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets147.0 +/- 0.0bp
Average Position of motif in Background77.0 +/- 69.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hmx1/MA0896.1/Jaspar

Match Rank:1
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----GCAACTAATG---
ACAAGCAATTAATGAAT
A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A A G T C A C G T C G T A C G T A A C G T A C T G A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:2
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----GCAACTAATG---
ACAAGCAATTAATGAAT
A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A A G T C A C G T C G T A C G T A A C G T A C T G A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

Isl1/MA1608.1/Jaspar

Match Rank:3
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:GCAACTAATG---
--NNCTAATGGNN
A C T G A G T C C G T A C G T A A G T C A C G T C G T A C G T A A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T T C A G G A T C C G A T C T G A C G T A G A C T C A T G C T A G T G C A G A C T

PH0063.1_Hoxb8/Jaspar

Match Rank:4
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GCAACTAATG--
ACCGGCAATTAATAAA
A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A A G T C A C G T C G T A C G T A A C G T A C T G A C G T A C G T
G C T A T A G C A G T C C A T G C T A G G A T C G T C A C G T A C G A T G C A T C G T A G C T A G A C T G T C A C T G A C G T A

Hmx3/MA0898.1/Jaspar

Match Rank:5
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GCAACTAATG---
ACAAGCAATTAAAGAAT
A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A A G T C A C G T C G T A C G T A A C G T A C T G A C G T A C G T A C G T
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T

PH0043.1_Hmx3/Jaspar

Match Rank:6
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GCAACTAATG---
ACAAGCAATTAAAGAAT
A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A A G T C A C G T C G T A C G T A A C G T A C T G A C G T A C G T A C G T
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T

Hmx2/MA0897.1/Jaspar

Match Rank:7
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GCAACTAATG---
ACAAGCAATTAAAGAAT
A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A A G T C A C G T C G T A C G T A A C G T A C T G A C G T A C G T A C G T
T C G A T A G C T G C A C T G A T C A G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A T C A G T C G A C T G A C A G T

PH0042.1_Hmx2/Jaspar

Match Rank:8
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GCAACTAATG---
ACAAGCAATTAAAGAAT
A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A A G T C A C G T C G T A C G T A A C G T A C T G A C G T A C G T A C G T
T C G A T A G C T G C A C T G A T C A G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A T C A G T C G A C T G A C A G T

HOXB4/MA1499.1/Jaspar

Match Rank:9
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:GCAACTAATG--
----NTAATGAT
A C T G A G T C C G T A C G T A A G T C A C G T C G T A C G T A A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A G T C A G C T G T C A C G T A A G C T A C T G C T G A A G C T

HOXC4/MA1504.1/Jaspar

Match Rank:10
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:GCAACTAATG--
----NTAATGAN
A C T G A G T C C G T A C G T A A G T C A C G T C G T A C G T A A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A G C T C G T A C G T A A G C T A C T G C T G A A G T C