Information for 4-CCAGCAACTAGC (Motif 4)

A G T C A G T C C G T A A C T G A G T C C G T A C G T A A G T C A C G T C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T C G T A A C T G A C G T A C G T A C T G A G T C A C G T A C T G A C T G
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets61.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CCAGCAACTAGC
SCCTAGCAACAG--
A C G T A C G T A G T C A G T C C G T A A C T G A G T C C G T A C G T A A G T C A C G T C G T A A C T G A G T C
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T

PB0155.1_Osr2_2/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CCAGCAACTAGC----
NNTGTAGGTAGCANNT
A G T C A G T C C G T A A C T G A G T C C G T A C G T A A G T C A C G T C G T A A C T G A G T C A C G T A C G T A C G T A C G T
A C T G C T A G C G A T C A T G A G C T C G T A C T A G A C T G C G A T C T G A T A C G A G T C C T G A C T G A C T A G G A C T

Hmx1/MA0896.1/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CCAGCAACTAGC----
ACAAGCAATTAATGAAT
A C G T A G T C A G T C C G T A A C T G A G T C C G T A C G T A A G T C A C G T C G T A A C T G A G T C A C G T A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CCAGCAACTAGC----
ACAAGCAATTAATGAAT
A C G T A G T C A G T C C G T A A C T G A G T C C G T A C G T A A G T C A C G T C G T A A C T G A G T C A C G T A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

GBX2/MA0890.1/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CCAGCAACTAGC
--ACCAATTAGC
A G T C A G T C C G T A A C T G A G T C C G T A C G T A A G T C A C G T C G T A A C T G A G T C
A C G T A C G T T C G A A T G C G A T C T C G A T G C A A C G T A C G T G C T A T C A G A T G C

PH0109.1_Nkx1-1/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CCAGCAACTAGC---
NCCCACTAATTAGCGCA
A C G T A C G T A G T C A G T C C G T A A C T G A G T C C G T A C G T A A G T C A C G T C G T A A C T G A G T C A C G T A C G T A C G T
A G C T G T A C A T G C G A T C T C G A A G T C G A C T G T C A C G T A C G A T A C G T C T G A T C A G A G T C A C T G A T G C G C T A

GBX1/MA0889.1/Jaspar

Match Rank:7
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CCAGCAACTAGC
--ACTAATTAGC
A G T C A G T C C G T A A C T G A G T C C G T A C G T A A G T C A C G T C G T A A C T G A G T C
A C G T A C G T T C G A A T G C G A C T T C G A T G C A G A C T G A C T G C T A T A C G A G T C

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:8
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CCAGCAACTAGC
CCGCATAGCAACGGA-
A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G A G T C C G T A C G T A A G T C A C G T C G T A A C T G A G T C
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A A C G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:9
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------CCAGCAACTAGC
TGTTKCCTAGCAACM---
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G A G T C C G T A C G T A A G T C A C G T C G T A A C T G A G T C
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C A C G T A C G T A C G T

VENTX/MA0724.1/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CCAGCAACTAGC
--ACCGATTAG-
A G T C A G T C C G T A A C T G A G T C C G T A C G T A A G T C A C G T C G T A A C T G A G T C
A C G T A C G T C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G A C G T