Information for 3-AGTTCACGGC (Motif 25)

C G T A A C T G A C G T A C G T A G T C C G T A A G T C A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C A C T G A C G T A C T G C G T A C G T A A G T C A C G T
p-value:1e-4
log p-value:-9.271e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif7.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets96.0 +/- 0.0bp
Average Position of motif in Background195.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR1I3/MA1534.1/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--AGTTCACGGC
AAAGTTCAT---
A C G T A C G T C G T A A C T G A C G T A C G T A G T C C G T A A G T C A C T G A C T G A G T C
C G T A C T G A C T G A A C T G A C G T C A G T A G T C C T G A G A C T A C G T A C G T A C G T

VDR/MA0693.2/Jaspar

Match Rank:2
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--AGTTCACGGC
TGAGTTCA----
A C G T A C G T C G T A A C T G A C G T A C G T A G T C C G T A A G T C A C T G A C T G A G T C
G A C T T C A G C T G A A C T G A C G T C A G T G A T C C T G A A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AGTTCACGGC--
AGGTCAAGGTCA
C G T A A C T G A C G T A C G T A G T C C G T A A G T C A C T G A C T G A G T C A C G T A C G T
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

MYBL1/MA0776.1/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AGTTCACGGC
ACCGTTAACGGT
A C G T A C G T C G T A A C T G A C G T A C G T A G T C C G T A A G T C A C T G A C T G A G T C
C T G A G T A C T A G C C A T G A G C T G C A T C G T A C T G A A G T C A T C G A C T G G A C T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGTTCACGGC--
AGGTCAAGGTCA
C G T A A C T G A C G T A C G T A G T C C G T A A G T C A C T G A C T G A G T C A C G T A C G T
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer

Match Rank:6
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---AGTTCACGGC
CAAAGKTCAA---
A C G T A C G T A C G T C G T A A C T G A C G T A C G T A G T C C G T A A G T C A C T G A C T G A G T C
G A T C G T C A T C G A T C G A C T A G C A T G A G C T G T A C T C G A T C G A A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGTTCACGGC
AAGGTCAC---
A C G T C G T A A C T G A C G T A C G T A G T C C G T A A G T C A C T G A C T G A G T C
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGTTCACGGC----
AAGTTCAAGGTCAGC
A C G T C G T A A C T G A C G T A C G T A G T C C G T A A G T C A C T G A C T G A G T C A C G T A C G T A C G T A C G T
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

RARB(var.3)/MA1552.1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AGTTCACGGC---
AAGGTCATGACCTT
A C G T C G T A A C T G A C G T A C G T A G T C C G T A A G T C A C T G A C T G A G T C A C G T A C G T A C G T
C T G A T C G A C T A G C A T G A C G T A G T C C T G A G A C T T C A G T C G A G T A C T G A C A G C T G A C T

NR6A1/MA1541.1/Jaspar

Match Rank:10
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----AGTTCACGGC---
GTCAAGTTCAAGGTCAA
A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C G T A G T C C G T A A G T C A C T G A C T G A G T C A C G T A C G T A C G T
A C T G A G C T A T G C C T G A T G C A C A T G C A G T A G C T A G T C C G T A G T C A C A T G C A T G A C G T A G T C C T G A C G T A