Information for 13-GAGCAGGGCAGA (Motif 12)

A C T G C G T A A C T G A G T C C G T A A C T G A C T G A C T G A G T C C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T A C T G A G T C A G T C A G T C A C G T A C T G A G T C A C G T A G T C
p-value:1e-3
log p-value:-8.878e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif13.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets91.0 +/- 0.0bp
Average Position of motif in Background110.0 +/- 76.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GAGCAGGGCAGA
CACAGCAGGGG---
A C G T A C G T A C T G C G T A A C T G A G T C C G T A A C T G A C T G A C T G A G T C C G T A A C T G C G T A
T A G C T C G A A G T C T G C A T A C G A G T C T C G A A T C G A C T G T A C G T C A G A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:2
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GAGCAGGGCAGA
--TNNGGGCAG-
A C T G C G T A A C T G A G T C C G T A A C T G A C T G A C T G A G T C C G T A A C T G C G T A
A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T

PB0199.1_Zfp161_2/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GAGCAGGGCAGA
GCCGCGCAGTGCGT-
A C G T A C G T A C G T A C T G C G T A A C T G A G T C C G T A A C T G A C T G A C T G A G T C C G T A A C T G C G T A
C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GAGCAGGGCAGA
WDNCTGGGCA--
A C T G C G T A A C T G A G T C C G T A A C T G A C T G A C T G A G T C C G T A A C T G C G T A
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T

Zic2/MA1629.1/Jaspar

Match Rank:5
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GAGCAGGGCAGA
CTCACAGCAGGGGG--
A C G T A C G T A C G T A C G T A C T G C G T A A C T G A G T C C G T A A C T G A C T G A C T G A G T C C G T A A C T G C G T A
T G A C C A G T T G A C G C T A T A G C G T C A T A C G A G T C C T G A C A T G A T C G C T A G T C A G T C A G A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GAGCAGGGCAGA
CACAGCAGGGGG--
A C G T A C G T A C T G C G T A A C T G A G T C C G T A A C T G A C T G A C T G A G T C C G T A A C T G C G T A
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GAGCAGGGCAGA
--NGTGGGCAT-
A C T G C G T A A C T G A G T C C G T A A C T G A C T G A C T G A G T C C G T A A C T G C G T A
A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T

PB0200.1_Zfp187_2/Jaspar

Match Rank:8
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----GAGCAGGGCAGA
NNAGGGACAAGGGCNC-
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A G T C C G T A A C T G A C T G A C T G A G T C C G T A A C T G C G T A
A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C A C G T

Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GAGCAGGGCAGA
CHCAGCRGGRGG--
A C G T A C G T A C T G C G T A A C T G A G T C C G T A A C T G A C T G A C T G A G T C C G T A A C T G C G T A
T G A C G T C A A G T C G C T A C T A G A G T C C T G A C A T G A C T G C T A G T A C G T C A G A C G T A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GAGCAGGGCAGA
GGGAGGACNG----
A C G T A C G T A C T G C G T A A C T G A G T C C G T A A C T G A C T G A C T G A G T C C G T A A C T G C G T A
C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G A C G T A C G T A C G T A C G T