Information for 6-AGCTWGTTACAM (Motif 7)

G T C A C T A G G T A C A C G T C G T A A T C G A C G T A G C T C G T A T A G C C G T A G T C A
Reverse Opposite:
C A G T C G A T A T C G A C G T C T G A T C G A A T G C G C A T G T C A A C T G A G T C A C G T
p-value:1e-4
log p-value:-9.900e+00
Information Content per bp:1.646
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif813.1
Percentage of Background Sequences with motif0.85%
Average Position of motif in Targets67.3 +/- 33.3bp
Average Position of motif in Background98.8 +/- 84.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

DMRTA2/MA1478.1/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AGCTWGTTACAM-
-AATTGTTACATT
G T C A C T A G G T A C A C G T C G T A A T C G A C G T A G C T C G T A T A G C C G T A G T C A A C G T
A C G T G C T A C G T A G C A T A G C T A C T G G C A T G C A T C T G A A G T C C G T A C G A T A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AGCTWGTTACAM-
--NTTGATACATT
G T C A C T A G G T A C A C G T C G T A A T C G A C G T A G C T C G T A T A G C C G T A G T C A A C G T
A C G T A C G T C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T

DMRTC2/MA1479.1/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AGCTWGTTACAM-
-AATTGATACATT
G T C A C T A G G T A C A C G T C G T A A T C G A C G T A G C T C G T A T A G C C G T A G T C A A C G T
A C G T G C T A C G T A G C A T A C G T A T C G G T C A G C A T G T C A A T G C C G T A G C A T C A G T

PH0040.1_Hmbox1/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AGCTWGTTACAM--
GAAAACTAGTTAACATC
A C G T A C G T A C G T G T C A C T A G G T A C A C G T C G T A A T C G A C G T A G C T C G T A T A G C C G T A G T C A A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

HMBOX1/MA0895.1/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AGCTWGTTACAM
-ACTAGTTAAC-
G T C A C T A G G T A C A C G T C G T A A T C G A C G T A G C T C G T A T A G C C G T A G T C A
A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C A C G T

PB0159.1_Rfx4_2/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGCTWGTTACAM-
TACCCTAGTTACCGA
A C G T A C G T G T C A C T A G G T A C A C G T C G T A A T C G A C G T A G C T C G T A T A G C C G T A G T C A A C G T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGCTWGTTACAM
SCCTAGCAACAG
G T C A C T A G G T A C A C G T C G T A A T C G A C G T A G C T C G T A T A G C C G T A G T C A
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:AGCTWGTTACAM-
---TTGCAACATN
G T C A C T A G G T A C A C G T C G T A A T C G A C G T A G C T C G T A T A G C C G T A G T C A A C G T
A C G T A C G T A C G T C A G T A C G T C T A G A G T C G T C A C G T A G A T C G C T A A G C T G A T C

HOXC13/MA0907.1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AGCTWGTTACAM
-GCTCGTAAAAA
G T C A C T A G G T A C A C G T C G T A A T C G A C G T A G C T C G T A T A G C C G T A G T C A
A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

NFIC/MA0161.2/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGCTWGTTACAM
TACTTGGCAGA-
G T C A C T A G G T A C A C G T C G T A A T C G A C G T A G C T C G T A T A G C C G T A G T C A
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A A C G T