Information for 6-GTTTTGGCATAA (Motif 5)

A C T G A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A A C G T A C T G A G T C A G T C C G T A C G T A C G T A C G T A A G T C
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets84.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GTTTTGGCATAA
-NNTTGGCANN-
A C T G A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C G T C G T A C G T A
A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GTTTTGGCATAA
--NTTGGCANN-
A C T G A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C G T C G T A C G T A
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GTTTTGGCATAA
--ATTTGCATAA
A C T G A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C G T C G T A C G T A
A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

HLF/MA0043.3/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GTTTTGGCATAA---
-NNGTTGCATAACNN
A C T G A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C G T C G T A C G T A A C G T A C G T A C G T
A C G T G C A T C A G T T C A G G A C T C A G T C T A G G A T C T C G A G A C T G T C A C G T A A G T C G T C A G C T A

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GTTTTGGCATAA
-GGTTGGCAT--
A C T G A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C G T C G T A C G T A
A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:6
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GTTTTGGCATAA
--ATTTGCATA-
A C T G A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C G T C G T A C G T A
A C G T A C G T G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A A C G T

POU5F1/MA1115.1/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GTTTTGGCATAA
-NATTTGCATNN
A C T G A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C G T C G T A C G T A
A C G T G T C A C G T A C G A T G A C T C G A T T C A G G A T C C T G A A G C T C G T A G C A T

NFIC/MA0161.2/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GTTTTGGCATAA
TACTTGGCAGA-
A C T G A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C G T C G T A C G T A
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A A C G T

POU2F1/MA0785.1/Jaspar

Match Rank:9
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GTTTTGGCATAA-
-AATTTGCATANT
A C T G A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C G T C G T A C G T A A C G T
A C G T G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T

NFIL3/MA0025.2/Jaspar

Match Rank:10
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GTTTTGGCATAA--
-NNATTGCATAANN
A C T G A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C G T C G T A C G T A A C G T A C G T
A C G T C G T A C A G T T C G A G C A T C A G T C T A G G A T C C T G A G A C T G T C A C G T A A G C T G C T A