Information for 1-CTGGGACATAAG (Motif 3)

A G T C A C G T A C T G A C T G A C T G C G T A A G T C C G T A A C G T C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T C G T A A C G T A C T G A C G T A G T C A G T C A G T C C G T A A C T G
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets10.0 +/- 0.0bp
Average Position of motif in Background114.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NEUROG2/MA0669.1/Jaspar

Match Rank:1
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CTGGGACATAAG--
----GACATATGTT
A G T C A C G T A C T G A C T G A C T G C G T A A G T C C G T A A C G T C G T A C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T C G A A G T C C G T A A C G T T G C A A G C T C T A G A C G T A G C T

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTGGGACATAAG---
CGAAGCACACAAAATA
A C G T A G T C A C G T A C T G A C T G A C T G C G T A A G T C C G T A A C G T C G T A C G T A A C T G A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTGGGACATAAG
CCAGGAACAG---
A C G T A G T C A C G T A C T G A C T G A C T G C G T A A G T C C G T A A C G T C G T A C G T A A C T G
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T

GATA2/MA0036.3/Jaspar

Match Rank:4
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CTGGGACATAAG--
---NNAGATAAGNN
A G T C A C G T A C T G A C T G A C T G C G T A A G T C C G T A A C G T C G T A C G T A A C T G A C G T A C G T
A C G T A C G T A C G T C T G A T C G A C G T A T C A G C G T A G C A T C G T A C G T A T C A G T C G A G C T A

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:5
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CTGGGACATAAG--
----NAGATAAGNN
A G T C A C G T A C T G A C T G A C T G C G T A A G T C C G T A A C G T C G T A C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T T A C G G C T A A C T G C G T A A C G T C G T A C T G A T A C G T C A G T C G A

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:6
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CTGGGACATAAG--
----CAGATAAGGN
A G T C A C G T A C T G A C T G A C T G C G T A A G T C C G T A A C G T C G T A C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T T A G C G C T A A C T G C G T A A C G T C G T A C G T A T A C G T C A G T C G A

NEUROG1/MA0623.2/Jaspar

Match Rank:7
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CTGGGACATAAG--
----GACATATGTC
A G T C A C G T A C T G A C T G A C T G C G T A A G T C C G T A A C G T C G T A C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T T C A G T G C A A T G C C T G A G A C T C T G A A G C T A C T G A C G T A G T C

ZBTB12/MA1649.1/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CTGGGACATAAG
ATCTGGAACCC---
A C G T A C G T A G T C A C G T A C T G A C T G A C T G C G T A A G T C C G T A A C G T C G T A C G T A A C T G
T C G A A G C T T A G C A G C T T C A G C A T G T G C A C T G A G A T C G T A C A G T C A C G T A C G T A C G T

GATA4/MA0482.2/Jaspar

Match Rank:9
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CTGGGACATAAG---
---NNAGATAAGGNN
A G T C A C G T A C T G A C T G A C T G C G T A A G T C C G T A A C G T C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T C G T A T C G A C G T A T C A G C G T A C A G T C G T A C G T A C T A G T C A G C G T A C G T A

ATOH7/MA1468.1/Jaspar

Match Rank:10
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CTGGGACATAAG--
----GACATATGTT
A G T C A C G T A C T G A C T G A C T G C G T A A G T C C G T A A C G T C G T A C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T G C A A G T C T C G A A C G T T C G A G A C T A C T G A C G T A G C T