Information for 5-GCCACAGCAGAA (Motif 5)

A C T G A G T C A G T C C G T A A G T C C G T A A C T G A G T C C G T A A C T G C G T A C G T A
Reverse Opposite:
A C G T A C G T A G T C A C G T A C T G A G T C A C G T A C T G A C G T A C T G A C T G A G T C
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets88.0 +/- 0.0bp
Average Position of motif in Background101.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF317/MA1593.1/Jaspar

Match Rank:1
Score:0.75
Offset:1
Orientation:forward strand
Alignment:GCCACAGCAGAA-
-TAACAGCAGACT
A C T G A G T C A G T C C G T A A G T C C G T A A C T G A G T C C G T A A C T G C G T A C G T A A C G T
A C G T C G A T T C G A C G T A T G A C C G T A C T A G G T A C C G T A C T A G G C T A G A T C G C A T

Zic2/MA1629.1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCCACAGCAGAA--
CTCACAGCAGGGGG
A C T G A G T C A G T C C G T A A G T C C G T A A C T G A G T C C G T A A C T G C G T A C G T A A C G T A C G T
T G A C C A G T T G A C G C T A T A G C G T C A T A C G A G T C C T G A C A T G A T C G C T A G T C A G T C A G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GCCACAGCAGAA--
--CACAGCAGGGGG
A C T G A G T C A G T C C G T A A G T C C G T A A C T G A G T C C G T A A C T G C G T A C G T A A C G T A C G T
A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:4
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GCCACAGCAGAA-
--CACAGCAGGGG
A C T G A G T C A G T C C G T A A G T C C G T A A C T G A G T C C G T A A C T G C G T A C G T A A C G T
A C G T A C G T T A G C T C G A A G T C T G C A T A C G A G T C T C G A A T C G A C T G T A C G T C A G

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCCACAGCAGAA--
GAGCACAGCAGGACA
A C G T A C T G A G T C A G T C C G T A A G T C C G T A A C T G A G T C C G T A A C T G C G T A C G T A A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer

Match Rank:6
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GCCACAGCAGAA--
--CHCAGCRGGRGG
A C T G A G T C A G T C C G T A A G T C C G T A A C T G A G T C C G T A A C T G C G T A C G T A A C G T A C G T
A C G T A C G T T G A C G T C A A G T C G C T A C T A G A G T C C T G A C A T G A C T G C T A G T A C G T C A G

PB0205.1_Zic1_2/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCCACAGCAGAA--
CCACACAGCAGGAGA
A C G T A C T G A G T C A G T C C G T A A G T C C G T A A C T G A G T C C G T A A C T G C G T A C G T A A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GCCACAGCAGAA
--CACAGN----
A C T G A G T C A G T C C G T A A G T C C G T A A C T G A G T C C G T A A C T G C G T A C G T A
A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GCCACAGCAGAA----
-DCHCAGCAGGRGGCC
A C T G A G T C A G T C C G T A A G T C C G T A A C T G A G T C C G T A A C T G C G T A C G T A A C G T A C G T A C G T A C G T
A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

RUNX1/MA0002.2/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GCCACAGCAGAA
AAACCACAGAN---
A C G T A C G T A C T G A G T C A G T C C G T A A G T C C G T A A C T G A G T C C G T A A C T G C G T A C G T A
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T