Information for 3-CACAGATCCATT (Motif 3)

A G T C C G T A A G T C C G T A A C T G C G T A A C G T A G T C A G T C C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A A C G T A C T G A C T G C G T A A C G T A G T C A C G T A C T G A C G T A C T G
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets116.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:1
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CACAGATCCATT
-HNRAATCAAT-
A G T C C G T A A G T C C G T A A C T G C G T A A C G T A G T C A G T C C G T A A C G T A C G T
A C G T G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:2
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CACAGATCCATT-
---DGATCRATAN
A G T C C G T A A G T C C G T A A C T G C G T A A C G T A G T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C T A G C T A G C T G A A C G T A G T C C T A G C G T A A C G T G T C A G A T C

Isl1/MA1608.1/Jaspar

Match Rank:3
Score:0.59
Offset:5
Orientation:forward strand
Alignment:CACAGATCCATT----
-----ATCCATTAGCA
A G T C C G T A A G T C C G T A A C T G C G T A A C G T A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A A C G T G A T C G T A C C T G A G C A T G A C T G C T A C T A G A G T C T G C A

PB0028.1_Hbp1_1/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CACAGATCCATT------
--NNCATTCATTCATNNN
A G T C C G T A A G T C C G T A A C T G C G T A A C G T A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CACAGATCCATT
AAGATATCCTT-
A G T C C G T A A G T C C G T A A C T G C G T A A C G T A G T C A G T C C G T A A C G T A C G T
G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CACAGATCCATT
CACAGN------
A G T C C G T A A G T C C G T A A C T G C G T A A C G T A G T C A G T C C G T A A C G T A C G T
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

PB0135.1_Hoxa3_2/Jaspar

Match Rank:7
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CACAGATCCATT----
--AAAAACCATTAAGG
A G T C C G T A A G T C C G T A A C T G C G T A A C G T A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

PH0134.1_Pbx1/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CACAGATCCATT----
TCACCCATCAATAAACA
A C G T A G T C C G T A A G T C C G T A A C T G C G T A A C G T A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

KLF17/MA1514.1/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CACAGATCCATT
CACCACGCACCCCTT
A C G T A C G T A C G T A G T C C G T A A G T C C G T A A C T G C G T A A C G T A G T C A G T C C G T A A C G T A C G T
G T A C G T C A T G A C T G A C G C T A G A T C T C A G G T A C C G T A T A G C T A G C G A T C T G A C G A C T G A C T

Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer

Match Rank:10
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CACAGATCCATT
----RRTCAATA
A G T C C G T A A G T C C G T A A C T G C G T A A C G T A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C T G A A G C T G T A C C T G A C G T A A C G T C G T A