Information for 22-ATGGATATGCAT (Motif 21)

C G T A A C G T A C T G A C T G C G T A A C G T C G T A A C G T A C T G A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C G T A G T C A G T C C G T A A C G T
p-value:1e-4
log p-value:-1.122e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets76.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:1
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--ATGGATATGCAT-
AYATGYATATGCATR
A C G T A C G T C G T A A C G T A C T G A C T G C G T A A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C G T
C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.82
Offset:-3
Orientation:reverse strand
Alignment:---ATGGATATGCAT
CTCATGAATATTCAT
A C G T A C G T A C G T C G T A A C G T A C T G A C T G C G T A A C G T C G T A A C G T A C T G A G T C C G T A A C G T
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.77
Offset:2
Orientation:reverse strand
Alignment:ATGGATATGCAT
--GHATATKCAT
C G T A A C G T A C T G A C T G C G T A A C G T C G T A A C G T A C T G A G T C C G T A A C G T
A C G T A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:ATGGATATGCAT
--GAATATTCAT
C G T A A C G T A C T G A C T G C G T A A C G T C G T A A C G T A C T G A G T C C G T A A C G T
A C G T A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T

POU2F2/MA0507.1/Jaspar

Match Rank:5
Score:0.69
Offset:1
Orientation:forward strand
Alignment:ATGGATATGCAT--
-TTCATTTGCATAT
C G T A A C G T A C T G A C T G C G T A A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T
A C G T G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer

Match Rank:6
Score:0.67
Offset:3
Orientation:forward strand
Alignment:ATGGATATGCAT-
---GATTTGCATA
C G T A A C G T A C T G A C T G C G T A A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C T G G T C A A C G T G C A T C G A T T C A G G T A C G T C A A C G T C T G A

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:ATGGATATGCAT
AAGGATATNTN-
C G T A A C G T A C T G A C T G C G T A A C G T C G T A A C G T A C T G A G T C C G T A A C G T
T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:8
Score:0.65
Offset:1
Orientation:forward strand
Alignment:ATGGATATGCAT------
-AAAATATGCATAATAAA
C G T A A C G T A C T G A C T G C G T A A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.65
Offset:4
Orientation:forward strand
Alignment:ATGGATATGCAT--
----ATTTGCATAA
C G T A A C G T A C T G A C T G C G T A A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

POU5F1/MA1115.1/Jaspar

Match Rank:10
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:ATGGATATGCAT--
---NATTTGCATNN
C G T A A C G T A C T G A C T G C G T A A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T G T C A C G T A C G A T G A C T C G A T T C A G G A T C C T G A A G C T C G T A G C A T