Information for 3-TGGATCCAAAGC (Motif 5)

A C G T A C T G A C T G C G T A A C G T A G T C A G T C C G T A C G T A C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T A C G T A C G T A C T G A C T G C G T A A C G T A G T C A G T C C G T A
p-value:1e-4
log p-value:-1.024e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets34.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4A(var.2)/MA1494.1/Jaspar

Match Rank:1
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TGGATCCAAAGC----
-GGGTCCAAAGGTCAC
A C G T A C T G A C T G C G T A A C G T A G T C A G T C C G T A C G T A C G T A A C T G A G T C A C G T A C G T A C G T A C G T
A C G T T C A G C T A G C A T G C A G T G A T C G A T C C T G A C G T A C T G A A C T G C A T G A C G T A G T C C T G A G T A C

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:2
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TGGATCCAAAGC
ATTTGCATACAATGG
A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C G T A G T C A G T C C G T A C G T A C G T A A C T G A G T C
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:3
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TGGATCCAAAGC
CGGTTTCAAA--
A C G T A C T G A C T G C G T A A C G T A G T C A G T C C G T A C G T A C G T A A C T G A G T C
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T

POU5F1/MA1115.1/Jaspar

Match Rank:4
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TGGATCCAAAGC
-ATATGCAAATT
A C G T A C T G A C T G C G T A A C G T A G T C A G T C C G T A C G T A C G T A A C T G A G T C
A C G T C G T A G C A T T C G A G A C T C T A G A G T C G C T A C T G A G C T A G C A T C A G T

Dmrt1/MA1603.1/Jaspar

Match Rank:5
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TGGATCCAAAGC---
--GATACAAAGTATC
A C G T A C T G A C T G C G T A A C G T A G T C A G T C C G T A C G T A C G T A A C T G A G T C A C G T A C G T A C G T
A C G T A C G T C T A G G C T A G C A T C G T A G A T C G C T A G C T A C G T A C T A G C G A T C G T A C G A T G T A C

E2F1/MA0024.3/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--TGGATCCAAAGC
TTTGGCGCCAAA--
A C G T A C G T A C G T A C T G A C T G C G T A A C G T A G T C A G T C C G T A C G T A C G T A A C T G A G T C
G C A T C G A T C A G T T C A G A T C G A T G C C T A G A T G C A T G C G C T A G C T A C G T A A C G T A C G T

SOX10/MA0442.2/Jaspar

Match Rank:7
Score:0.53
Offset:2
Orientation:forward strand
Alignment:TGGATCCAAAGC-
--AAAACAAAGAA
A C G T A C T G A C T G C G T A A C G T A G T C A G T C C G T A C G T A C G T A A C T G A G T C A C G T
A C G T A C G T C T G A C T G A T G C A G C T A A G T C C G T A G C T A G C T A A C T G T C G A T G C A

Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer

Match Rank:8
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:TGGATCCAAAGC
--TATGCAAATC
A C G T A C T G A C T G C G T A A C G T A G T C A G T C C G T A C G T A C G T A A C T G A G T C
A C G T A C G T G A C T C G T A C A G T A C T G A G T C C G T A C G T A C G T A C A G T T G A C

PB0040.1_Lef1_1/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--TGGATCCAAAGC---
NANAGATCAAAGGGNNN
A C G T A C G T A C G T A C T G A C T G C G T A A C G T A G T C A G T C C G T A C G T A C G T A A C T G A G T C A C G T A C G T A C G T
A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T

E2F3/MA0469.3/Jaspar

Match Rank:10
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----TGGATCCAAAGC
ATTTTGGCGCCAAAAT
A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C G T A G T C A G T C C G T A C G T A C G T A A C T G A G T C
C T G A C G A T C G A T G C A T C A G T T A C G C A T G G A T C C T A G G T A C A T G C G T C A C G T A C G T A G C T A G A C T