Information for 2-AGCATGGATA (Motif 8)

C G T A A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T C G T A
Reverse Opposite:
A C G T C G T A A C G T A G T C A G T C C G T A A C G T A C T G A G T C A C G T
p-value:1e-3
log p-value:-8.670e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif16.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets141.0 +/- 0.0bp
Average Position of motif in Background92.6 +/- 63.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0159.1_Rfx4_2/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AGCATGGATA----
TACCCTAGTTACCGA
A C G T C G T A A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T C G T A A C G T A C G T A C G T A C G T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.65
Offset:3
Orientation:forward strand
Alignment:AGCATGGATA---
---ATGMATATDC
C G T A A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.64
Offset:3
Orientation:forward strand
Alignment:AGCATGGATA---
---ATGAATATTC
C G T A A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:AGCATGGATA----
---AAGGATATNTN
C G T A A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGCATGGATA------
CTACTTGGATACGGAAT
A C G T C G T A A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A T G C A C G T T C G A A T G C C A G T G A C T T C A G A C T G C G T A A C G T C G T A G A T C T A C G T A C G C G T A C G T A G C A T

PB0158.1_Rfx3_2/Jaspar

Match Rank:6
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----AGCATGGATA--------
ACTGACCCTTGGTTACCACAAAG
A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G T C A C G T A T C G G C T A A T G C T A C G A T G C G C A T C G A T T C A G A C T G C G A T C A G T C G T A G A T C T G A C T C G A T G A C T C G A T C G A C G T A A T C G

CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGCATGGATA
NTNATCGATA
C G T A A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T C G T A
G C A T A G C T C A G T T C G A A G C T G A T C C T A G T C G A A C G T T G C A

NFAT5/MA0606.1/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AGCATGGATA--
--NATGGAAAAN
C G T A A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T C G T A A C G T A C G T
A C G T A C G T G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AGCATGGATA--
--AATGGAAAAT
C G T A A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T C G T A A C G T A C G T
A C G T A C G T T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T

PH0148.1_Pou3f3/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AGCATGGATA-----
AAAATATGCATAATAAA
A C G T A C G T C G T A A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A