Information for 4-AGTACCTT (Motif 20)

C G T A A C T G A C G T C G T A A G T C A G T C A C G T A C G T
Reverse Opposite:
C G T A C G T A A C T G A C T G A C G T C G T A A G T C A C G T
p-value:1e-2
log p-value:-5.901e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif57.6
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets11.0 +/- 0.0bp
Average Position of motif in Background98.2 +/- 83.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:1
Score:0.73
Offset:-6
Orientation:forward strand
Alignment:------AGTACCTT---
ACTCCAAGTACTTGGAA
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T
T C G A G T A C C G A T A T G C T A G C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A C T G T C A G T G C A G T C A

PH0117.1_Nkx3-1/Jaspar

Match Rank:2
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------AGTACCTT---
NATTTAAGTACTTANNA
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T
T A G C G C T A C G A T G A C T C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T A G G C A T G C T A

PH0116.1_Nkx2-9/Jaspar

Match Rank:3
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------AGTACCTT---
NATTTAAGTACTTNAAA
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T
C T G A G C T A C G A T G C A T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T G C T A C G T A C T G A G C T A

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:4
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AGTACCTT
TTAAGTGCTT-
A C G T A C G T A C G T C G T A A C T G A C G T C G T A A G T C A G T C A C G T A C G T
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T

PH0112.1_Nkx2-3/Jaspar

Match Rank:5
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----AGTACCTT---
CNTTAAGTACTTAANG
A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G

Esrrg/MA0643.1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AGTACCTT--
ATGACCTTGA
C G T A A C T G A C G T C G T A A G T C A G T C A C G T A C G T A C G T A C G T
C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A

HLTF/MA0109.1/Jaspar

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AGTACCTT----
--AACCTTATAT
C G T A A C T G A C G T C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A G C T A G T A C A G T C C G A T A C G T C G T A A C G T T C G A G A C T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AGTACCTT
NNACTTACCTN
A C G T A C G T A C G T C G T A A C T G A C G T C G T A A G T C A G T C A C G T A C G T
C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G

PB0014.1_Esrra_1/Jaspar

Match Rank:9
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----AGTACCTT-----
NNNNATGACCTTGANTN
A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:10
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----AGTACCTT--
ADGGYAGYAGCATCT
A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A A G T C A G T C A C G T A C G T A C G T A C G T
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T