Information for 1-CGAAATGGGC (Motif 2)

A G T C A C T G C G T A C G T A C G T A A C G T A C T G A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C A G T C C G T A A C G T A C G T A C G T A G T C A C T G
p-value:1e-4
log p-value:-1.121e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets26.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0132.1_Hbp1_2/Jaspar

Match Rank:1
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CGAAATGGGC---
NNTNNACAATGGGANNN
A C G T A C G T A C G T A C G T A G T C A C T G C G T A C G T A C G T A A C G T A C T G A C T G A C T G A G T C A C G T A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

YY1/MA0095.2/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CGAAATGGGC--
CAAGATGGCGGC
A G T C A C T G C G T A C G T A C G T A A C G T A C T G A C T G A C T G A G T C A C G T A C G T
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

PB0133.1_Hic1_2/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CGAAATGGGC------
NNNNTTGGGCACNNCN
A G T C A C T G C G T A C G T A C G T A A C G T A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

KLF13/MA0657.1/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CGAAATGGGC-------
CAAAAAGGGGCGTGGCAT
A C G T A G T C A C T G C G T A C G T A C G T A A C G T A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T A C G T C A G T C A G T C A C T G A C T G A C A T G C T A G A C T G C T A G G A T C T A C G A G C T C A T G C A T G G A T C G T C A G A C T

PB0137.1_Irf3_2/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CGAAATGGGC--
GGAGAAAGGTGCGA
A C G T A C G T A G T C A C T G C G T A C G T A C G T A A C G T A C T G A C T G A C T G A G T C A C G T A C G T
C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

HLTF/MA0109.1/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CGAAATGGGC
NNATAAGGNN
A G T C A C T G C G T A C G T A C G T A A C G T A C T G A C T G A C T G A G T C
C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CGAAATGGGC
GTTAATGGCC
A G T C A C T G C G T A C G T A C G T A A C G T A C T G A C T G A C T G A G T C
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

KLF14/MA0740.1/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CGAAATGGGC------
--AAGGGGGCGTGGCC
A G T C A C T G C G T A C G T A C G T A A C G T A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C T G A C T A G C A T G T C A G T C A G A T C G A G T C C A T G A C G T T C A G C A T G A G T C G T A C

PH0089.1_Isx/Jaspar

Match Rank:9
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CGAAATGGGC--
ACTCCTAATTAGTCGT
A C G T A C G T A C G T A C G T A G T C A C T G C G T A C G T A C G T A A C G T A C T G A C T G A C T G A G T C A C G T A C G T
G C T A T G A C A G C T T G A C G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C G T A G T C T A C G C G A T

HIC2/MA0738.1/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CGAAATGGGC--
---NGTGGGCAT
A G T C A C T G C G T A C G T A C G T A A C G T A C T G A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T