Information for 1-TCCTAAAATGAC (Motif 6)

A C G T A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C G T A C T G C G T A A G T C
Reverse Opposite:
A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T C G T A A C T G A C T G C G T A
p-value:1e-4
log p-value:-9.944e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets7.0 +/- 0.0bp
Average Position of motif in Background23.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB9/MA1503.1/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TCCTAAAATGAC
GTCGTAAAAT---
A C G T A C G T A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C G T A C T G C G T A A G T C
T C A G A G C T A G T C T C A G A C G T G C T A C G T A G T C A G C T A G A C T A C G T A C G T A C G T

HOXC9/MA0485.2/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TCCTAAAATGAC
GTCGTAAAAT---
A C G T A C G T A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C G T A C T G C G T A A G T C
T C A G A G C T A G T C C T A G A C G T C G T A C G T A G T C A G C T A G A C T A C G T A C G T A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TCCTAAAATGAC
GTCGTAAAAT---
A C G T A C G T A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C G T A C T G C G T A A G T C
T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T A C G T A C G T A C G T

HOXD10/MA1506.1/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TCCTAAAATGAC
GGTCGTAAAAC---
A C G T A C G T A C G T A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C G T A C T G C G T A A G T C
T C A G T C A G A G C T G T A C T C A G A C G T C G T A C G T A G T C A G C T A G A T C A C G T A C G T A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:5
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----TCCTAAAATGAC
AAAGCTCGTAAAATTT-
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C G T A C T G C G T A A G T C
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T A C G T

HOXD11/MA0908.1/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TCCTAAAATGAC
GTCGTAAAAA---
A C G T A C G T A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C G T A C T G C G T A A G T C
T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A A C G T A C G T A C G T

HOXC12/MA0906.1/Jaspar

Match Rank:7
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TCCTAAAATGAC
GGTCGTAAAAA---
A C G T A C G T A C G T A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C G T A C T G C G T A A G T C
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A A C G T A C G T A C G T

HOXC11/MA0651.1/Jaspar

Match Rank:8
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TCCTAAAATGAC
GGTCGTAAAAT---
A C G T A C G T A C G T A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C G T A C T G C G T A A G T C
C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T A C G T A C G T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:9
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----TCCTAAAATGAC
AAACCTCGTAAAATTT-
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C G T A C T G C G T A A G T C
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T A C G T

HOXC13/MA0907.1/Jaspar

Match Rank:10
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TCCTAAAATGAC
GCTCGTAAAAA---
A C G T A C G T A C G T A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C G T A C T G C G T A A G T C
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A A C G T A C G T A C G T