Information for 1-CCAGTTACGATC (Motif 1)

A G T C A T G C C G T A A C T G C G A T C G A T C G T A A T G C C A T G G C T A A C G T G A T C
Reverse Opposite:
C A T G G T C A C G A T G T A C A T C G A C G T C G T A C G T A T A G C C G A T A T C G C T A G
p-value:1e-5
log p-value:-1.361e+01
Information Content per bp:1.689
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1074.0
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets53.0 +/- 11.8bp
Average Position of motif in Background104.0 +/- 129.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA9/MA0594.2/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CCAGTTACGATC
-NNTTTACGAC-
A G T C A T G C C G T A A C T G C G A T C G A T C G T A A T G C C A T G G C T A A C G T G A T C
A C G T A T G C C T A G C G A T C G A T C G A T C T G A A G T C C A T G C T G A A G T C A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCAGTTACGATC
ACCACTTAA----
A C G T A G T C A T G C C G T A A C T G C G A T C G A T C G T A A T G C C A T G G C T A A C G T G A T C
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T A C G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:3
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CCAGTTACGATC
TAAGCCACTTAACATT
A C G T A C G T A C G T A C G T A G T C A T G C C G T A A C T G C G A T C G A T C G T A A T G C C A T G G C T A A C G T G A T C
C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

PB0184.1_Tbp_2/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCAGTTACGATC--
CCGATTTAAGCGACC
A C G T A G T C A T G C C G T A A C T G C G A T C G A T C G T A A T G C C A T G G C T A A C G T G A T C A C G T A C G T
T G A C A T G C A T C G C G T A G A C T C G A T C G A T G T C A G C T A A T C G T A G C A C T G G C T A A C G T G T A C

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:5
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CCAGTTACGATC
CTTAACCACTTAAGGAT
A C G T A C G T A C G T A C G T A C G T A G T C A T G C C G T A A C T G C G A T C G A T C G T A A T G C C A T G G C T A A C G T G A T C
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

LHX2/MA0700.2/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCAGTTACGATC
AACCAATTAAT---
A C G T A C G T A G T C A T G C C G T A A C T G C G A T C G A T C G T A A T G C C A T G G C T A A C G T G A T C
C G T A C G T A A T G C G A T C G C T A G C T A C G A T C G A T G C T A C G T A G C A T A C G T A C G T A C G T

Nkx3-2/MA0122.3/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CCAGTTACGATC
ATAACCACTTAAA---
A C G T A C G T A C G T A C G T A G T C A T G C C G T A A C T G C G A T C G A T C G T A A T G C C A T G G C T A A C G T G A T C
C G T A C G A T C G T A C G T A T G A C G A T C G C T A G T A C G C A T G A C T G C T A C G T A G C T A A C G T A C G T A C G T

MSX2/MA0708.1/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCAGTTACGATC
CCAATTAA----
A G T C A T G C C G T A A C T G C G A T C G A T C G T A A T G C C A T G G C T A A C G T G A T C
T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A A C G T A C G T A C G T A C G T

HOXC11/MA0651.1/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CCAGTTACGATC
-NTTTTACGACC
A G T C A T G C C G T A A C T G C G A T C G A T C G T A A T G C C A T G G C T A A C G T G A T C
A C G T C G T A C G A T C A G T C G A T G C A T C G T A A G T C C T A G C T G A A G T C G A T C

LBX1/MA0618.1/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CCAGTTACGATC
CTAATTAA----
A G T C A T G C C G T A A C T G C G A T C G A T C G T A A T G C C A T G G C T A A C G T G A T C
T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A A C G T A C G T A C G T A C G T