Information for 6-GCCAGACATGTA (Motif 6)

A C T G A G T C A G T C C G T A A C T G C G T A A G T C C G T A A C G T A C T G A C G T C G T A
Reverse Opposite:
A C G T C G T A A G T C C G T A A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets97.0 +/- 0.0bp
Average Position of motif in Background19.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----GCCAGACATGTA-
CAAATCCAGACATCACA
A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C T G C G T A A G T C C G T A A C G T A C T G A C G T C G T A A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad4/MA1153.1/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GCCAGACATGTA
TCTAGACA----
A C T G A G T C A G T C C G T A A C T G C G T A A G T C C G T A A C G T A C T G A C G T C G T A
A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GCCAGACATGTA
-CCAGACAG---
A C T G A G T C A G T C C G T A A C T G C G T A A G T C C G T A A C G T A C T G A C G T C G T A
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GCCAGACATGTA
-CCAGACRSVB-
A C T G A G T C A G T C C G T A A C T G C G T A A G T C C G T A A C G T A C T G A C G T C G T A
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GCCAGACATGTA
ATGCCAGACN----
A C G T A C G T A C T G A G T C A G T C C G T A A C T G C G T A A G T C C G T A A C G T A C T G A C G T C G T A
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GCCAGACATGTA
AGGTGHCAGACA----
A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C T G C G T A A G T C C G T A A C G T A C T G A C G T C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T

PH0083.1_Irx3_1/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GCCAGACATGTA-----
AAAATACATGTAATACT
A C T G A G T C A G T C C G T A A C T G C G T A A G T C C G T A A C G T A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T
C G T A C T G A C G A T C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A T G C A C G A T C G T A G A T C C G A T

PH0082.1_Irx2/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCCAGACATGTA----
ANTNTTACATGTATNTA
A C G T A C T G A G T C A G T C C G T A A C T G C G T A A G T C C G T A A C G T A C T G A C G T C G T A A C G T A C G T A C G T A C G T
C G T A T G C A G C A T G A C T G A C T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A G A C T G C A T C G A T G C T A

PH0084.1_Irx3_2/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCCAGACATGTA----
NNTATTACATGTANNNT
A C G T A C T G A G T C A G T C C G T A A C T G C G T A A G T C C G T A A C G T A C T G A C G T C G T A A C G T A C G T A C G T A C G T
G C A T C T G A G C A T G C T A A C G T C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A C G A T G C T A G C A T G C A T

PH0086.1_Irx5/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCCAGACATGTA----
ANTNNTACATGTANNTN
A C G T A C T G A G T C A G T C C G T A A C T G C G T A A G T C C G T A A C G T A C T G A C G T C G T A A C G T A C G T A C G T A C G T
G C T A G T C A G C A T G C A T C A G T C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A C G A T G C T A G C A T G C A T