Information for 9-CCCGAGTACT (Motif 30)

A G T C A G T C A G T C A C T G C G T A A C T G A C G T C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G A C G T C G T A A G T C A C G T A G T C A C T G A C T G A C T G
p-value:1e-3
log p-value:-8.426e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif7.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.0 +/- 0.0bp
Average Position of motif in Background60.6 +/- 52.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-CCCGAGTACT------
TTCNAAGTACTTNNNNN
A C G T A G T C A G T C A G T C A C T G C G T A A C T G A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A C G T A G T C T G A C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A T C G T A C G G C T A C A T G A G C T

ZNF274/MA1592.1/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CCCGAGTACT------
NNCGAGAACTCATACN
A G T C A G T C A G T C A C T G C G T A A C T G A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T C A T C A G G A T C C T A G C G T A C A T G C T G A G T C A A T G C G A C T A G T C T G C A G A C T T C G A A G T C G A T C

PH0117.1_Nkx3-1/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCCGAGTACT------
TACTAAGTACTTAAATG
A C G T A G T C A G T C A G T C A C T G C G T A A C T G A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

PH0112.1_Nkx2-3/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCCGAGTACT-----
CTTTAAGTACTTAATG
A C G T A G T C A G T C A G T C A C T G C G T A A C T G A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G A T C A G C T A G C T G C A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C T G A G A C T C T A G

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:5
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CCCGAGTACT---
---AAGCACTTAA
A G T C A G T C A G T C A C T G C G T A A C T G A C G T C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

PH0116.1_Nkx2-9/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CCCGAGTACT------
TTTTAAGTACTTAAATT
A C G T A G T C A G T C A G T C A C T G C G T A A C T G A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T G A C T G C A T C G A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C G T A G C T A C G A T G A C T

PB0099.1_Zfp691_1/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CCCGAGTACT-----
NNNNTGAGCACTGTNNG
A C G T A C G T A G T C A G T C A G T C A C T G C G T A A C T G A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

ZBTB14/MA1650.1/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CCCGAGTACT-
CCCCGCGCACCC
A C G T A G T C A G T C A G T C A C T G C G T A A C T G A C G T C G T A A G T C A C G T A C G T
T A G C A T G C T A G C A T G C T A C G A T G C T A C G T A G C T G C A A T G C T A G C A T G C

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:9
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CCCGAGTACT-
-TTRAGTGSYK
A G T C A G T C A G T C A C T G C G T A A C T G A C G T C G T A A G T C A C G T A C G T
A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CCCGAGTACT
CTYRAGTGSY
A G T C A G T C A G T C A C T G C G T A A C T G A C G T C G T A A G T C A C G T
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C