Information for 4-GACATAGGACAG (Motif 5)

A C T G C G T A A G T C C G T A A C G T C G T A A C T G A C T G C G T A A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A C G T A G T C A G T C A C G T C G T A A C G T A C T G A C G T A G T C
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.0 +/- 0.0bp
Average Position of motif in Background147.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GACATAGGACAG--
TGACANARRCCAGRC
A C G T A C T G C G T A A G T C C G T A A C G T C G T A A C T G A C T G C G T A A G T C C G T A A C T G A C G T A C G T
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GACATAGGACAG
--CAAAGGTCAG
A C T G C G T A A G T C C G T A A C G T C G T A A C T G A C T G C G T A A G T C C G T A A C T G
A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GACATAGGACAG
TAGGGCAAAGGTCA-
A C G T A C G T A C G T A C T G C G T A A G T C C G T A A C G T C G T A A C T G A C T G C G T A A G T C C G T A A C T G
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T

NEUROG2/MA0669.1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GACATAGGACAG
AACATATGTC--
A C T G C G T A A G T C C G T A A C G T C G T A A C T G A C T G C G T A A G T C C G T A A C T G
T C G A T G C A G A T C C T G A A C G T T G C A G C A T A C T G A G C T A G T C A C G T A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GACATAGGACAG
TGGGGCAAAGGTCA-
A C G T A C G T A C G T A C T G C G T A A G T C C G T A A C G T C G T A A C T G A C T G C G T A A G T C C G T A A C T G
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GACATAGGACAG
GTAGGGCAAAGGTCA-
A C G T A C G T A C G T A C G T A C T G C G T A A G T C C G T A A C G T C G T A A C T G A C T G C G T A A G T C C G T A A C T G
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GACATAGGACAG---
AAWCTAGGTCARDNN
A C T G C G T A A G T C C G T A A C G T C G T A A C T G A C T G C G T A A G T C C G T A A C T G A C G T A C G T A C G T
C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A

PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer

Match Rank:8
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GACATAGGACAG
VNAGGKCAAAGGTCA-
A C G T A C G T A C G T A C G T A C T G C G T A A G T C C G T A A C G T C G T A A C T G A C T G C G T A A G T C C G T A A C T G
T G A C C G A T C T G A C T A G C T A G A C G T A T G C T G C A T C G A C T G A C T A G C A T G A C G T A G T C C G T A A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:9
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GACATAGGACAG
-AAYTAGGTCA-
A C T G C G T A A G T C C G T A A C G T C G T A A C T G A C T G C G T A A G T C C G T A A C T G
A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GACATAGGACAG
-AAYTAGGTCA-
A C T G C G T A A G T C C G T A A C G T C G T A A C T G A C T G C G T A A G T C C G T A A C T G
A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T