Information for 1-AAGGGATTAT (Motif 9)

C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T C G T A A C G T
Reverse Opposite:
C G T A A C G T C G T A C G T A A C G T A G T C A G T C A G T C A C G T A C G T
p-value:1e-4
log p-value:-1.034e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets19.0 +/- 0.0bp
Average Position of motif in Background146.2 +/- 42.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PITX2/MA1547.1/Jaspar

Match Rank:1
Score:0.82
Offset:2
Orientation:reverse strand
Alignment:AAGGGATTAT
--GGGATTAN
C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C T G T C A G C T A G G T C A A C G T A G C T C G T A C A G T

OTX2/MA0712.2/Jaspar

Match Rank:2
Score:0.82
Offset:0
Orientation:forward strand
Alignment:AAGGGATTAT--
AAGGGATTAGAA
C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T C G T A A C G T A C G T A C G T
G C T A C G T A C T A G C T A G C T A G G T C A C A G T G C A T C G T A C T A G C G T A C G T A

PH0126.1_Obox6/Jaspar

Match Rank:3
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---AAGGGATTAT--
AAAAACGGATTATTG
A C G T A C G T A C G T C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T C G T A A C G T A C G T A C G T
G T C A G C T A C T G A G C T A C T A G T A G C C T A G A C T G G T C A A C G T G A C T C G T A C G A T G A C T A T C G

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:AAGGGATTAT
-NGGGATTA-
C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T C G T A A C G T
A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T

PITX3/MA0714.1/Jaspar

Match Rank:5
Score:0.78
Offset:2
Orientation:reverse strand
Alignment:AAGGGATTAT-
--GGGATTANN
C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

PITX1/MA0682.2/Jaspar

Match Rank:6
Score:0.78
Offset:2
Orientation:reverse strand
Alignment:AAGGGATTAT
--NGGATTAN
C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T C G T A A C G T
A C G T A C G T C A T G T C A G C A T G G T C A A C G T A C G T C G T A C T A G

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:7
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:AAGGGATTAT-
-VRGGATTARN
C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T C G T A A C G T A C G T
A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

GSC/MA0648.1/Jaspar

Match Rank:8
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:AAGGGATTAT-
-NNGGATTAGN
C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T C G T A A C G T A C G T
A C G T C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C

PH0129.1_Otx1/Jaspar

Match Rank:9
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--AAGGGATTAT-----
AGAGGGGATTAATTTAT
A C G T A C G T C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

PH0130.1_Otx2/Jaspar

Match Rank:10
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--AAGGGATTAT-----
TGTAGGGATTAATTGTC
A C G T A C G T C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C