Information for 6-CAGAATTATGAC (Motif 6)

A G T C C G T A A C T G C G T A C G T A A C G T A C G T C G T A A C G T A C T G C G T A A G T C
Reverse Opposite:
A C T G A C G T A G T C C G T A A C G T C G T A C G T A A C G T A C G T A G T C A C G T A C T G
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets76.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0176.1_Sox5_2/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CAGAATTATGAC-
NNCTNAATTATGANN
A C G T A C G T A G T C C G T A A C T G C G T A C G T A A C G T A C G T C G T A A C G T A C T G C G T A A G T C A C G T
G A C T G A T C A T G C A C G T G C A T C T G A C G T A C G A T A C G T G T C A G A C T T C A G G C T A C G A T G C T A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CAGAATTATGAC-
-TGATTTATGGCC
A G T C C G T A A C T G C G T A C G T A A C G T A C G T C G T A A C G T A C T G C G T A A G T C A C G T
A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CAGAATTATGAC-
AAATGATTTATGGCT
A C G T A C G T A G T C C G T A A C T G C G T A C G T A A C G T A C G T C G T A A C G T A C T G C G T A A G T C A C G T
C T G A C G T A C G T A C G A T C T A G C G T A C G A T C G A T C A G T T C G A A G C T C A T G C T A G A G T C G A C T

Dlx1/MA0879.1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CAGAATTATGAC
CCTAATTATC--
A G T C C G T A A C T G C G T A C G T A A C G T A C G T C G T A A C G T A C T G C G T A A G T C
T G A C T G A C G A C T T G C A G C T A C G A T A C G T G C T A A C G T A T G C A C G T A C G T

MF0010.1_Homeobox_class/Jaspar

Match Rank:5
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CAGAATTATGAC
---AATTATT--
A G T C C G T A A C T G C G T A C G T A A C G T A C G T C G T A A C G T A C T G C G T A A G T C
A C G T A C G T A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T A C G T

PB0177.1_Sox7_2/Jaspar

Match Rank:6
Score:0.60
Offset:-10
Orientation:reverse strand
Alignment:----------CAGAATTATGAC
NNCNNNCNCANACAATTAGNAC
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A C G T A A C G T A C G T C G T A A C G T A C T G C G T A A G T C
T C G A A T C G T G A C C A T G A G C T G T C A A G T C C G T A A T G C C T G A A T G C C G T A A G T C C G T A C G T A G C A T C A G T G C T A T A C G A T G C G C T A T G A C

PBX2/MA1113.2/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CAGAATTATGAC
NNTGATTTATGNN
A C G T A G T C C G T A A C T G C G T A C G T A A C G T A C G T C G T A A C G T A C T G C G T A A G T C
C G T A C T G A C G A T C T A G C G T A C G A T C G A T C A G T T C G A G A C T C A T G C T G A A G T C

HOXA9/MA0594.2/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CAGAATTATGAC
--NNTTTACGAC
A G T C C G T A A C T G C G T A C G T A A C G T A C G T C G T A A C G T A C T G C G T A A G T C
A C G T A C G T A T G C C T A G C G A T C G A T C G A T C T G A A G T C C A T G C T G A A G T C

PH0065.1_Hoxc10/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CAGAATTATGAC----
ANNTTTTACGACNTNN
A G T C C G T A A C T G C G T A C G T A A C G T A C G T C G T A A C G T A C T G C G T A A G T C A C G T A C G T A C G T A C G T
T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CAGAATTATGAC
NGGGATTA----
A G T C C G T A A C T G C G T A C G T A A C G T A C G T C G T A A C G T A C T G C G T A A G T C
T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T A C G T A C G T