Information for 2-CCATACACCA (Motif 8)

A G T C A G T C C G T A A C G T C G T A A G T C C G T A A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G A C G T A C T G A C G T C G T A A C G T A C T G A C T G
p-value:1e-4
log p-value:-9.246e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif9.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets89.0 +/- 0.0bp
Average Position of motif in Background156.7 +/- 41.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCATACACCA
GGCCATAAATCA
A C G T A C G T A G T C A G T C C G T A A C G T C G T A A G T C C G T A A G T C A G T C C G T A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CCATACACCA--
CAAATCCAGACATCACA
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T C G T A A G T C C G T A A G T C A G T C C G T A A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

HOXD13/MA0909.2/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCATACACCA
CCCAATAAAAC-
A C G T A C G T A G T C A G T C C G T A A C G T C G T A A G T C C G T A A G T C A G T C C G T A
T A G C T A G C A G T C G T C A C T G A C G A T C G T A C T G A G T C A T G C A T G A C A C G T

PBX2/MA1113.2/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCATACACCA--
GTCATAAATCATT
A C G T A G T C A G T C C G T A A C G T C G T A A G T C C G T A A G T C A G T C C G T A A C G T A C G T
T C A G G A C T G T A C C T G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G A C T G C A T

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCATACACCA---
NNCCATAAATCATNN
A C G T A C G T A G T C A G T C C G T A A C G T C G T A A G T C C G T A A G T C A G T C C G T A A C G T A C G T A C G T
C T G A T C A G G A T C G T A C T C G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G C A T G C A T G A C T

CDX1/MA0878.2/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCATACACCA
GGCCATAAAAC-
A C G T A C G T A G T C A G T C C G T A A C G T C G T A A G T C C G T A A G T C A G T C C G T A
C A T G C T A G A G T C T G A C C G T A A C G T C T G A C G T A C T G A G T C A A G T C A C G T

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCATACACCA
YCATCMATCA
A G T C A G T C C G T A A C G T C G T A A G T C C G T A A G T C A G T C C G T A
G A T C G T A C C T G A A C G T G A T C G T C A C T G A A C G T G A T C G C T A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCATACACCA-
GYCATCMATCAT
A C G T A G T C A G T C C G T A A C G T C G T A A G T C C G T A A G T C A G T C C G T A A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

MEIS1(var.2)/MA1639.1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCATACACCA--
GTCATCAATCATT
A C G T A G T C A G T C C G T A A C G T C G T A A G T C C G T A A G T C A G T C C G T A A C G T A C G T
C T A G G A C T G A T C C T G A C A G T G T A C G T C A G C T A G C A T G T A C G C T A G C A T G C A T

HOXA13/MA0650.2/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCATACACCA
CCCAATAAAAC-
A C G T A C G T A G T C A G T C C G T A A C G T C G T A A G T C C G T A A G T C A G T C C G T A
T G A C T A G C A G T C G T C A C G T A A C G T C T G A C T G A C G T A G T C A G T A C A C G T