Information for 1-AAGTAACATTAG (Motif 1)

C G T A C G T A A C T G A C G T C G T A C G T A A G T C C G T A A C G T A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A C G T A A C G T A C T G A C G T A C G T C G T A A G T C A C G T A C G T
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets137.0 +/- 0.0bp
Average Position of motif in Background82.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AAGTAACATTAG-------
GAAGTANCACGAATNMRAGT
A C G T C G T A C G T A A C T G A C G T C G T A C G T A A G T C C G T A A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T

PB0093.1_Zfp105_1/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AAGTAACATTAG
AACAAACAACAAGAG
A C G T A C G T A C G T C G T A C G T A A C T G A C G T C G T A C G T A A G T C C G T A A C G T A C G T C G T A A C T G
G C T A C G T A G A T C G T C A C G T A G C T A G A T C C T G A C G T A G T A C C T G A G C T A C A T G C G T A C T A G

Isl1/MA1608.1/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:forward strand
Alignment:AAGTAACATTAG--
---ATCCATTAGCA
C G T A C G T A A C T G A C G T C G T A C G T A A G T C C G T A A C G T A C G T C G T A A C T G A C G T A C G T
A C G T A C G T A C G T C T G A A C G T G A T C G T A C C T G A G C A T G A C T G C T A C T A G A G T C T G C A

GATA1/MA0035.4/Jaspar

Match Rank:4
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:AAGTAACATTAG--
---NNAGATTAGAN
C G T A C G T A A C T G A C G T C G T A C G T A A G T C C G T A A C G T A C G T C G T A A C T G A C G T A C G T
A C G T A C G T A C G T C G T A G C A T C G T A C A T G C G T A C G A T G C A T G C T A C A T G C G T A G C T A

PB0119.1_Foxa2_2/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AAGTAACATTAG-
AAAAATAACAAACGG
A C G T A C G T C G T A C G T A A C T G A C G T C G T A C G T A A G T C C G T A A C G T A C G T C G T A A C T G A C G T
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

Foxd3/MA0041.1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AAGTAACATTAG
AAACAAACATTC-
A C G T C G T A C G T A A C T G A C G T C G T A C G T A A G T C C G T A A C G T A C G T C G T A A C T G
C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C A C G T

DMRTA2/MA1478.1/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AAGTAACATTAG
AATGTAACAATT-
A C G T C G T A C G T A A C T G A C G T C G T A C G T A A G T C C G T A A C G T A C G T C G T A A C T G
T G C A G C T A G C A T C T A G G A C T C G T A C G T A T G A C T C G A C G T A G C A T C G A T A C G T

PB0073.1_Sox7_1/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AAGTAACATTAG-------
AATAAAGAACAATAGAATTTCA
A C G T A C G T A C G T C G T A C G T A A C T G A C G T C G T A C G T A A G T C C G T A A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T C A G C T A A C G T C T G A G C T A C G T A C T A G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C T A G A C T G C A T G C A T A G T C G C T A

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AAGTAACATTAG--
--GWAAYHTGAKMC
C G T A C G T A A C T G A C G T C G T A C G T A A G T C C G T A A C G T A C G T C G T A A C T G A C G T A C G T
A C G T A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

Arid5a/MA0602.1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AAGTAACATTAG
NNTNNCAATATTAG
A C G T A C G T C G T A C G T A A C T G A C G T C G T A C G T A A G T C C G T A A C G T A C G T C G T A A C T G
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G