Information for 1-GAGTTCAGGGAG (Motif 1)

A C T G C G T A A C T G A C G T A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C T G
Reverse Opposite:
A G T C A C G T A G T C A G T C A G T C A C G T A C T G C G T A C G T A A G T C A C G T A G T C
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets6.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

VDR/MA0693.2/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GAGTTCAGGGAG
TGAGTTCA-----
A C G T A C T G C G T A A C T G A C G T A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C T G
G A C T T C A G C T G A A C T G A C G T C A G T G A T C C T G A A C G T A C G T A C G T A C G T A C G T

NR1I2/MA1533.1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GAGTTCAGGGAG-----
GAGTTCATNGAGTTCAN
A C T G C G T A A C T G A C G T A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T
T C A G T C G A C T A G A C G T A C G T G A T C C T G A G A C T A G T C T A C G C T G A A C T G A C G T A C G T G A T C T C G A G A C T

RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GAGTTCAGGGAG-
-AGGTCAAGGTCA
A C T G C G T A A C T G A C G T A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C T G A C G T
A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer

Match Rank:4
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GAGTTCAGGGAG--
--RHHCAGAGAGGB
A C T G C G T A A C T G A C G T A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C T G A C G T A C G T
A C G T A C G T T C A G G T C A G C T A A G T C C G T A A T C G T C G A T C A G C G T A A C T G A C T G A C T G

NR1I3/MA1534.1/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GAGTTCAGGGAG
AAAGTTCAT----
A C G T A C T G C G T A A C T G A C G T A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C T G
C G T A C T G A C T G A A C T G A C G T C A G T A G T C C T G A G A C T A C G T A C G T A C G T A C G T

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GAGTTCAGGGAG-------
NGAGGTCANNGAGTTCANNN
A C G T A C T G C G T A A C T G A C G T A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A T C A G C T G A C T A G C A T G A C G T A T G C C G T A A T G C G C A T T C A G C T G A A C T G A C G T C A G T A G T C C G T A C A G T C T A G C A T G

RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GAGTTCAGGGAG
CAAAGKTCAA----
A C G T A C G T A C T G C G T A A C T G A C G T A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C T G
G A T C G T C A T C G A T C G A C T A G C A T G A G C T G T A C T C G A T C G A A C G T A C G T A C G T A C G T

Stat5b/MA1625.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GAGTTCAGGGAG---
NNNTTCTGGGAANNN
A C T G C G T A A C T G A C G T A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C T G A C G T A C G T A C G T
A T C G C G T A A G C T A G C T G A C T T G A C G A C T C A T G C T A G C T A G C G T A C T G A C G T A G A C T T C A G

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GAGTTCAGGGAG-
-AGGTCAAGGTCA
A C T G C G T A A C T G A C G T A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C T G A C G T
A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

STAT1/MA0137.3/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GAGTTCAGGGAG-
--TTTCCAGGAAA
A C T G C G T A A C T G A C G T A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C T G A C G T
A C G T A C G T A C G T A G C T A C G T T G A C G A T C C T G A C T A G C A T G C T G A G T C A C T G A