Information for 1-CCGTCGGGTT (Motif 1)

A G T C A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T A C G T
Reverse Opposite:
C G T A C G T A A G T C A G T C A G T C A C T G C G T A A G T C A C T G A C T G
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets141.0 +/- 0.0bp
Average Position of motif in Background116.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0179.1_Sp100_2/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CCGTCGGGTT----
TCCGTCGCTTAAAAG
A C G T A G T C A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T G C G A T C T C A G G C A T T G A C A C T G G A T C A C G T C A G T G C T A C G T A G C T A C G T A A C T G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCGTCGGGTT
CTGTCTGG--
A G T C A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T A C G T
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CCGTCGGGTT---
NNTNNTGTCTGGNNTNG
A C G T A C G T A C G T A C G T A G T C A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCGTCGGGTT
VBSYGTCTGG--
A C G T A C G T A G T C A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T A C G T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T

SIX1/MA1118.1/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CCGTCGGGTT--
-TATCAGGTTAC
A G T C A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A C G T
A C G T C A G T T G C A G C A T G A T C C G T A C A T G C T A G G C A T C G A T G C T A G T A C

EBF3/MA1637.1/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CCGTCGGGTT
NNTCCCTTGGGAN
A C G T A C G T A C G T A G T C A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T A C G T
C G T A A C G T A G C T A G T C G A T C A G T C G A C T C A G T C T A G C T A G A T C G T C G A T G C A

ETS2/MA1484.1/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CCGTCGGGTT
ACTTCCGGTN
A G T C A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T A C G T
T C G A A G T C C G A T A C G T A T G C G A T C A C T G A T C G G A C T G A T C

POL001.1_MTE/Jaspar

Match Rank:8
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----CCGTCGGGTT-----
NCGACCGCTCCGCTCGAAA
A C G T A C G T A C G T A C G T A G T C A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T C A G A T G C C T A G C G T A A T G C A G T C A C T G G A C T A C G T A T G C A T G C A C T G A G T C A C G T A G T C A C T G C T G A C T G A T C G A

PB0153.1_Nr2f2_2/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CCGTCGGGTT-----
CGCGCCGGGTCACGTA
A C G T A G T C A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

TFAP2B/MA0811.1/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CCGTCGGGTT
TGCCCTNGGGCA
A C G T A C G T A G T C A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T A C G T
G A C T T A C G A T G C A G T C A G T C A G C T T C A G T C A G C T A G A T C G A T G C C T G A