Information for 2-CGCATTGGCA (Motif 2)

A G T C A C T G A G T C C G T A A C G T A C G T A C T G A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C A G T C C G T A C G T A A C G T A C T G A G T C A C T G
p-value:1e-4
log p-value:-1.103e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets124.0 +/- 0.0bp
Average Position of motif in Background66.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFYB/MA0502.2/Jaspar

Match Rank:1
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CGCATTGGCA--
CTCATTGGCCAG
A G T C A C T G A G T C C G T A A C G T A C G T A C T G A C T G A G T C C G T A A C G T A C G T
A T G C A G C T A T G C G C T A A G C T C A G T C A T G C T A G A G T C G A T C T G C A T C A G

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:CGCATTGGCA--
--NNTTGGCANN
A G T C A C T G A G T C C G T A A C G T A C G T A C T G A C T G A G T C C G T A A C G T A C G T
A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:CGCATTGGCA--
---NTTGGCANN
A G T C A C T G A G T C C G T A A C G T A C G T A C T G A C T G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFY(CCAAT)/Promoter/Homer

Match Rank:4
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CGCATTGGCA
CCGATTGGCT
A G T C A C T G A G T C C G T A A C G T A C G T A C T G A C T G A G T C C G T A
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T

NRF(NRF)/Promoter/Homer

Match Rank:5
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CGCATTGGCA-
GCGCATGCGCAC
A C G T A G T C A C T G A G T C C G T A A C G T A C G T A C T G A C T G A G T C C G T A A C G T
A C T G A G T C A C T G A G T C C G T A A C G T A C T G A G T C A C T G A G T C C T G A T A G C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CGCATTGGCA-
---CTTGGCAA
A G T C A C T G A G T C C G T A A C G T A C G T A C T G A C T G A G T C C G T A A C G T
A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CGCATTGGCA--
CTCATTTGCATW
A G T C A C T G A G T C C G T A A C G T A C G T A C T G A C T G A G T C C G T A A C G T A C G T
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A

NFIC/MA0161.2/Jaspar

Match Rank:8
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CGCATTGGCA--
-TACTTGGCAGA
A G T C A C T G A G T C C G T A A C G T A C G T A C T G A C T G A G T C C G T A A C G T A C G T
A C G T G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CGCATTGGCA-
--GGTTGGCAT
A G T C A C T G A G T C C G T A A C G T A C G T A C T G A C T G A G T C C G T A A C G T
A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CGCATTGGCA-
GCGCATGCGCAG
A C G T A G T C A C T G A G T C C G T A A C G T A C G T A C T G A C T G A G T C C G T A A C G T
T C A G T G A C C T A G T A G C T G C A A C G T T A C G A G T C A C T G A G T C T C G A T A C G