Information for 2-TTGCTAAGCTTC (Motif 2)

A C G T A C G T A C T G A G T C A C G T C G T A C G T A A C T G A G T C A C G T A C G T A G T C
Reverse Opposite:
A C T G C G T A C G T A A C T G A G T C A C G T A C G T C G T A A C T G A G T C C G T A C G T A
p-value:1e-4
log p-value:-1.063e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.69
Offset:4
Orientation:forward strand
Alignment:TTGCTAAGCTTC
----CAAGCTT-
A C G T A C G T A C T G A G T C A C G T C G T A C G T A A C T G A G T C A C G T A C G T A G T C
A C G T A C G T A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:2
Score:0.68
Offset:-8
Orientation:reverse strand
Alignment:--------TTGCTAAGCTTC---
NTNNNNNGTTGCTANGGNNCANA
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A C G T A A C T G A G T C A C G T A C G T A G T C A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----TTGCTAAGCTTC
NNCGTTGCTATGGNN-
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A C G T A A C T G A G T C A C G T A C G T A G T C
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----TTGCTAAGCTTC
NCCGTTGCTANGNGN-
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A C G T A A C T G A G T C A C G T A C G T A G T C
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TTGCTAAGCTTC
CTGTTGCTAGGS---
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A C G T A A C T G A G T C A C G T A C G T A G T C
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G A C G T A C G T A C G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TTGCTAAGCTTC-
KGTTGCTAGGMAACA
A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A C G T A A C T G A G T C A C G T A C G T A G T C A C G T
C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

POL008.1_DCE_S_I/Jaspar

Match Rank:7
Score:0.61
Offset:7
Orientation:forward strand
Alignment:TTGCTAAGCTTC-
-------GCTTCC
A C G T A C G T A C T G A G T C A C G T C G T A C G T A A C T G A G T C A C G T A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C

Crx/MA0467.1/Jaspar

Match Rank:8
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TTGCTAAGCTTC--
---CTAATCCTCTT
A C G T A C G T A C T G A G T C A C G T C G T A C G T A A C T G A G T C A C G T A C G T A G T C A C G T A C G T
A C G T A C G T A C G T G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T

NFIC/MA0161.2/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TTGCTAAGCTTC
NNTGCCAAGNN--
A C G T A C G T A C G T A C T G A G T C A C G T C G T A C G T A A C T G A G T C A C G T A C G T A G T C
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A A C G T A C G T

RFX1/MA0509.2/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---TTGCTAAGCTTC
CTGTTGCTATGGCA-
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A C G T A A C T G A G T C A C G T A C G T A G T C
A G T C C A G T C T A G A G C T G A C T C T A G G A T C A G C T C T G A C A G T C T A G T C A G G T A C C T G A A C G T