Information for 6-AAGCTGACCTGT (Motif 6)

C G T A C G T A A C T G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C G T
Reverse Opposite:
C G T A A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G A G T C A C G T A C G T
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets190.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0053.1_Rara_1/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:AAGCTGACCTGT----
NNNGTGACCTTTGNNN
C G T A C G T A A C T G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:AAGCTGACCTGT
----TGACCT--
C G T A C G T A A C T G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:AAGCTGACCTGT
----TGACCTYA
C G T A C G T A A C T G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:AAGCTGACCTGT-
---CTGACCTTTG
C G T A C G T A A C T G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:5
Score:0.66
Offset:4
Orientation:forward strand
Alignment:AAGCTGACCTGT----
----TGACCTTTNCNT
C G T A C G T A A C T G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G C G T A A G T C G T A C A C G T A C G T A C G T G T C A G T A C T G A C G A C T

NR4A1/MA1112.2/Jaspar

Match Rank:6
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:AAGCTGACCTGT--
--NNTGACCTTTNN
C G T A C G T A A C T G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C G T A C G T A C G T
A C G T A C G T G A C T A G C T G A C T T C A G T G C A G T A C G T A C A G C T G A C T G A C T C G T A G T C A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:7
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:AAGCTGACCTGT
----TGACCYCT
C G T A C G T A A C T G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer

Match Rank:8
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:AAGCTGACCTGT----
----TGACCTYTGVMC
C G T A C G T A A C T G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T T C A G T G C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A T G A C A T G C

ESR2/MA0258.2/Jaspar

Match Rank:9
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----AAGCTGACCTGT
AGGNCANNGTGACCT--
A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C G T
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T A C G T A C G T

NR2F2/MA1111.1/Jaspar

Match Rank:10
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:AAGCTGACCTGT-
--NNTGACCTTTN
C G T A C G T A A C T G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C G T A C G T
A C G T A C G T G A C T G A C T G A C T C T A G T G C A G A T C G T A C G A C T G C A T C A G T C T A G