Information for 10-GAGTGCCAGGAG (Motif 12)

A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C T G A C T G C G T A A C T G
Reverse Opposite:
A G T C A C G T A G T C A G T C A C G T A C T G A C T G A G T C C G T A A G T C A C G T A G T C
p-value:1e-4
log p-value:-9.497e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif7.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets195.0 +/- 0.0bp
Average Position of motif in Background79.9 +/- 77.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX3/MA1114.1/Jaspar

Match Rank:1
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----GAGTGCCAGGAG-
GGGTGAGTGACAGGCGG
A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C T G A C T G C G T A A C T G A C G T
T A C G A C T G A C T G C G A T T C A G C G T A A C T G C A G T T A C G C T G A T A G C C T G A A C T G T A C G A T G C T C A G A T C G

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGCCAGGAG
NTGATTGACAGN--
A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C T G A C T G C G T A A C T G
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T

PKNOX1/MA0782.2/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GAGTGCCAGGAG
TTTGAGTGACAGCTA
A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C T G A C T G C G T A A C T G
C G A T G C A T C G A T T C A G C T G A A C T G C G A T A T C G C T G A G A T C C G T A A C T G T A G C A G C T C T G A

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:4
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GAGTGCCAGGAG
TGAGTGACAGSC-
A C G T A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C T G A C T G C G T A A C T G
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:5
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGCCAGGAG
BTGABTGACAGS--
A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C T G A C T G C G T A A C T G
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GAGTGCCAGGAG
--TTGCCAAG--
A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C T G A C T G C G T A A C T G
A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T

NFIC/MA0161.2/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GAGTGCCAGGAG
-NNTGCCAAGNN
A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C T G A C T G C G T A A C T G
A C G T G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GAGTGCCAGGAG
-CGTGCCAAG--
A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C T G A C T G C G T A A C T G
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:9
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GAGTGCCAGGAG
---TGCCAGCB-
A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C T G A C T G C G T A A C T G
A C G T A C G T A C G T G A C T C T A G A T G C A G T C G T C A T A C G A T G C A T C G A C G T

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GAGTGCCAGGAG
-GGTGCCAAGT-
A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C T G A C T G C G T A A C T G
A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T