Information for 4-ATTCAGGCCA (Motif 11)

C G T A A C G T A C G T A G T C C G T A A C T G A C T G A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G A G T C A G T C A C G T A C T G C G T A C G T A A C G T
p-value:1e-3
log p-value:-8.185e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif26.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets24.0 +/- 0.0bp
Average Position of motif in Background104.2 +/- 82.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--ATTCAGGCCA--
ACATTCATGACACG
A C G T A C G T C G T A A C G T A C G T A G T C C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C G T
C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-ATTCAGGCCA----
AAWCTAGGTCARDNN
A C G T C G T A A C G T A C G T A G T C C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T
C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A

RORB/MA1150.1/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:forward strand
Alignment:ATTCAGGCCA-
AATTAGGTCAC
C G T A A C G T A C G T A G T C C G T A A C T G A C T G A G T C A G T C C G T A A C G T
C G T A G C T A C G A T A C G T C T G A A C T G C T A G A G C T G A T C C T G A G A T C

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-ATTCAGGCCA-
CNGTCACGCCAC
A C G T C G T A A C G T A C G T A G T C C G T A A C T G A C T G A G T C A G T C C G T A A C G T
G T A C C T A G T C A G A G C T T A G C C G T A A T G C T A C G A G T C G T A C G T C A A G T C

PB0170.1_Sox17_2/Jaspar

Match Rank:5
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------ATTCAGGCCA-
GACCACATTCATACAAT
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A G T C C G T A A C T G A C T G A G T C A G T C C G T A A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

SREBF2/MA0596.1/Jaspar

Match Rank:6
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:ATTCAGGCCA-
-ATCACCCCAT
C G T A A C G T A C G T A G T C C G T A A C T G A C T G A G T C A G T C C G T A A C G T
A C G T C T G A A C G T A G T C C G T A A T G C T A G C A G T C A T G C C G T A A G C T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.64
Offset:2
Orientation:forward strand
Alignment:ATTCAGGCCA
--TRAGGTCA
C G T A A C G T A C G T A G T C C G T A A C T G A C T G A G T C A G T C C G T A
A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.64
Offset:1
Orientation:forward strand
Alignment:ATTCAGGCCA-
-ATCACCCCAT
C G T A A C G T A C G T A G T C C G T A A C T G A C T G A G T C A G T C C G T A A C G T
A C G T T C G A G C A T A T G C C T G A A T G C T A G C A G T C G T A C T C G A A G C T

RORC/MA1151.1/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--ATTCAGGCCA
ATAAGTAGGTCA
A C G T A C G T C G T A A C G T A C G T A G T C C G T A A C T G A C T G A G T C A G T C C G T A
C T G A C G A T G C T A C G T A A C T G A C G T T C G A C A T G C T A G A C G T A G T C C T G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:10
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ATTCAGGCCA
AAYTAGGTCA
C G T A A C G T A C G T A G T C C G T A A C T G A C T G A G T C A G T C C G T A
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A