Information for 22-GAGTTTTTGGCC (Motif 21)

A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C A G T C C G T A C G T A C G T A C G T A C G T A A G T C A C G T A G T C
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets130.0 +/- 0.0bp
Average Position of motif in Background176.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX1/MA0878.2/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GAGTTTTTGGCC
-GTTTTATGGCC
A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C A G T C
A C G T T C A G C A G T A G C T A C G T A G C T C G T A A C G T A C T G T C A G G A T C G T A C

Rarg/MA0859.1/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GAGTTTTTGGCC--
TTGACCTTTTGACCTT
A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C A G T C A C G T A C G T
C G A T A G C T T C A G T G C A T G A C G T A C A G C T G A C T G C A T A G C T T C A G T G C A T G A C A G T C A G C T A G C T

CDX4/MA1473.1/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GAGTTTTTGGCC
-GTTTTATTGCC
A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C A G T C
A C G T T C A G C A G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G T C G T A C

Rarb/MA0857.1/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GAGTTTTTGGCC---
TGACCTTTTGACCTTT
A C G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C A G T C A C G T A C G T A C G T
G A C T T C A G T C G A T G A C A G T C A G C T G A C T C G A T A G C T T A C G G T C A T G A C G T A C A G C T G A C T C G A T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:GAGTTTTTGGCC--
-----NTTGGCANN
A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GAGTTTTTGGCC--
TGACCTTTTGACCTC
A C G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C A G T C A C G T A C G T
A G C T C T A G C G T A G T A C A G T C A C G T G A C T G C A T C A G T T C A G G T C A A G T C A G T C G A C T A G T C

RARA/MA0729.1/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GAGTTTTTGGCC--
CATTGACCTTTTGACCTC
A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C A G T C A C G T A C G T
T G A C G T C A C G A T A G C T C T A G C G T A G T A C G T A C A C G T G C A T G C A T A G C T A T C G T C G A G T A C A G T C A G C T G A T C

PH0013.1_Cdx2/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GAGTTTTTGGCC---
NAATTTTATTACCNNN
A C G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C A G T C A C G T A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

NFYB/MA0502.2/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GAGTTTTTGGCC--
--CTCATTGGCCAG
A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C A G T C A C G T A C G T
A C G T A C G T A T G C A G C T A T G C G C T A A G C T C A G T C A T G C T A G A G T C G A T C T G C A T C A G

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GAGTTTTTGGCC--
----NNTTGGCANN
A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C