Information for 3-ACATCATTAAAT (Motif 4)

C G T A A G T C C G T A A C G T A G T C C G T A A C G T A C G T C G T A C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T A C G T C G T A C G T A A C G T A C T G C G T A A C G T A C T G A C G T
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets157.0 +/- 0.0bp
Average Position of motif in Background184.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX6-3/MA1530.1/Jaspar

Match Rank:1
Score:0.73
Offset:2
Orientation:forward strand
Alignment:ACATCATTAAAT
--CTCATTAAA-
C G T A A G T C C G T A A C G T A G T C C G T A A C G T A C G T C G T A C G T A C G T A A C G T
A C G T A C G T T A G C A G C T A G T C C G T A A C G T A G C T C T G A G C T A G C T A A C G T

HOXB4/MA1499.1/Jaspar

Match Rank:2
Score:0.71
Offset:2
Orientation:forward strand
Alignment:ACATCATTAAAT
--ATCATTAG--
C G T A A G T C C G T A A C G T A G T C C G T A A C G T A C G T C G T A C G T A C G T A A C G T
A C G T A C G T T C G A A G C T G T A C C T G A A C G T A C G T C T G A T C A G A C G T A C G T

HOXC4/MA1504.1/Jaspar

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:ACATCATTAAAT
--GTCATTAA--
C G T A A G T C C G T A A C G T A G T C C G T A A C G T A C G T C G T A C G T A C G T A A C G T
A C G T A C G T T C A G G A C T G T A C C T G A A C G T A C G T C T G A T C G A A C G T A C G T

HOXD4/MA1507.1/Jaspar

Match Rank:4
Score:0.69
Offset:2
Orientation:forward strand
Alignment:ACATCATTAAAT
--ATCATTAG--
C G T A A G T C C G T A A C G T A G T C C G T A A C G T A C G T C G T A C G T A C G T A A C G T
A C G T A C G T T C G A A G C T G T A C C T G A A C G T A C G T C T G A C T A G A C G T A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:5
Score:0.69
Offset:2
Orientation:forward strand
Alignment:ACATCATTAAAT
--GTCGTAAAAT
C G T A A G T C C G T A A C G T A G T C C G T A A C G T A C G T C G T A C G T A C G T A A C G T
A C G T A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

POU6F1(var.2)/MA1549.1/Jaspar

Match Rank:6
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:ACATCATTAAAT
NNCTCATTAT--
C G T A A G T C C G T A A C G T A G T C C G T A A C G T A C G T C G T A C G T A C G T A A C G T
G C T A A T G C T G A C C G A T T G A C G T C A A C G T A G C T C T G A G A C T A C G T A C G T

PB0176.1_Sox5_2/Jaspar

Match Rank:7
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--ACATCATTAAAT-
TATCATAATTAAGGA
A C G T A C G T C G T A A G T C C G T A A C G T A G T C C G T A A C G T A C G T C G T A C G T A C G T A A C G T A C G T
C G A T G C T A C G A T A G T C C T G A C A G T T G C A G C T A G C A T G A C T C G T A T G C A T A C G C A T G C G T A

PH0150.1_Pou4f3/Jaspar

Match Rank:8
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-ACATCATTAAAT---
GACNTCATTAATAANN
A C G T C G T A A G T C C G T A A C G T A G T C C G T A A C G T A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
C T A G C T G A T G A C G A T C C A G T G T A C C G T A C G A T C G A T C G T A C T G A C G A T C G T A G T C A A G T C C G A T

Arid3a/MA0151.1/Jaspar

Match Rank:9
Score:0.68
Offset:5
Orientation:forward strand
Alignment:ACATCATTAAAT
-----ATTAAA-
C G T A A G T C C G T A A C G T A G T C C G T A A C G T A C G T C G T A C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T

HOXA4/MA1496.1/Jaspar

Match Rank:10
Score:0.68
Offset:2
Orientation:forward strand
Alignment:ACATCATTAAAT
--GTCATTAG--
C G T A A G T C C G T A A C G T A G T C C G T A A C G T A C G T C G T A C G T A C G T A A C G T
A C G T A C G T T C A G A G C T T G A C C T G A A C G T A G C T T C G A T C A G A C G T A C G T