Information for 5-GABARTTTAGAC (Motif 5)

A C T G C T G A A C T G C G T A C T A G A C G T A C G T A C G T C G T A C A T G C G T A G T A C
Reverse Opposite:
A C T G A C G T G T A C C G A T T C G A C G T A G T C A A G T C G A C T T A G C A G C T G T A C
p-value:1e-5
log p-value:-1.280e+01
Information Content per bp:1.678
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif36.36%
Number of Background Sequences with motif761.4
Percentage of Background Sequences with motif0.97%
Average Position of motif in Targets102.8 +/- 49.7bp
Average Position of motif in Background98.2 +/- 65.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GABARTTTAGAC
---NATTCAAAT
A C T G C T G A A C T G C G T A C T A G A C G T A C G T A C G T C G T A C A T G C G T A G T A C
A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

Foxq1/MA0040.1/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GABARTTTAGAC
TATTGTTTATT-
A C T G C T G A A C T G C G T A C T A G A C G T A C G T A C G T C G T A C A T G C G T A G T A C
G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GABARTTTAGAC
NNNNNNCTTTTATAN
A C G T A C G T A C G T A C T G C T G A A C T G C G T A C T A G A C G T A C G T A C G T C G T A C A T G C G T A G T A C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

TBP/MA0108.2/Jaspar

Match Rank:4
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GABARTTTAGAC
NNNNNNCTTTTATAN
A C G T A C G T A C G T A C T G C T G A A C T G C G T A C T A G A C G T A C G T A C G T C G T A C A T G C G T A G T A C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

PH0165.1_Six6_1/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GABARTTTAGAC------
-ANANNTGATACCCTATN
A C T G C T G A A C T G C G T A C T A G A C G T A C G T A C G T C G T A C A T G C G T A G T A C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T G C A C G A T C G T A G C T A C A G T G C A T C A T G C G T A A G C T G T C A A G T C T A G C A G T C A G C T G C T A C G A T G A C T

DMRTC2/MA1479.1/Jaspar

Match Rank:6
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GABARTTTAGAC---
---AATTGATACATT
A C T G C T G A A C T G C G T A C T A G A C G T A C G T A C G T C G T A C A T G C G T A G T A C A C G T A C G T A C G T
A C G T A C G T A C G T G C T A C G T A G C A T A C G T A T C G G T C A G C A T G T C A A T G C C G T A G C A T C A G T

PH0166.1_Six6_2/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GABARTTTAGAC------
-AATNTTGATACCCTATN
A C T G C T G A A C T G C G T A C T A G A C G T A C G T A C G T C G T A C A T G C G T A G T A C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T G C A C T G A C G A T C T G A C G A T C G A T C A T G C G T A G A C T G T C A A G T C G A T C G A T C A G C T G C T A G C A T G A C T

PB0177.1_Sox7_2/Jaspar

Match Rank:8
Score:0.56
Offset:-10
Orientation:reverse strand
Alignment:----------GABARTTTAGAC
NNCNNNCNCANACAATTAGNAC
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C T G A A C T G C G T A C T A G A C G T A C G T A C G T C G T A C A T G C G T A G T A C
T C G A A T C G T G A C C A T G A G C T G T C A A G T C C G T A A T G C C T G A A T G C C G T A A G T C C G T A C G T A G C A T C A G T G C T A T A C G A T G C G C T A T G A C

PB0059.1_Six6_1/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GABARTTTAGAC------
-ANANNTGATACCCNATN
A C T G C T G A A C T G C G T A C T A G A C G T A C G T A C G T C G T A C A T G C G T A G T A C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T G A C G A T C G T A G C A T C T G A G A C T C T A G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A C T

BARHL2/MA0635.1/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GABARTTTAGAC
-ANCGTTTANN-
A C T G C T G A A C T G C G T A C T A G A C G T A C G T A C G T C G T A C A T G C G T A G T A C
A C G T C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C A C G T