Information for 3-VCCYTAATTCAA (Motif 3)

T A G C A G T C A G T C A G T C A G C T C T G A T C G A A G C T A C G T A G T C C G T A G T C A
Reverse Opposite:
C A G T C G A T A C T G C G T A C T G A A C G T A G C T T C G A C T A G C T A G A C T G A C T G
p-value:1e-6
log p-value:-1.460e+01
Information Content per bp:1.659
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif36.36%
Number of Background Sequences with motif482.0
Percentage of Background Sequences with motif0.61%
Average Position of motif in Targets89.2 +/- 60.8bp
Average Position of motif in Background98.5 +/- 67.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0011.1_Alx1_2/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-VCCYTAATTCAA----
CGCATTAATTAATTGGC
A C G T T A G C A G T C A G T C A G T C A G C T C T G A T C G A A G C T A C G T A G T C C G T A G T C A A C G T A C G T A C G T A C G T
A G T C T C A G G T A C C T G A G A C T G A C T C T G A C G T A G A C T A G C T C T G A C T G A A G C T A G C T C T A G C T A G T G A C

PB0068.1_Sox1_1/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:forward strand
Alignment:VCCYTAATTCAA-----
-AATCAATTCAATAATT
T A G C A G T C A G T C A G T C A G C T C T G A T C G A A G C T A C G T A G T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T
A C G T G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

PH0156.1_Rax/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-VCCYTAATTCAA----
TGCACTAATTAGCGCAC
A C G T T A G C A G T C A G T C A G T C A G C T C T G A T C G A A G C T A C G T A G T C C G T A G T C A A C G T A C G T A C G T A C G T
C G A T T A C G A G T C T C G A A G T C G A C T T C G A C T G A A G C T A C G T C T G A T C A G A G T C A T C G T A G C T G C A G A T C

PH0173.1_Uncx/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-VCCYTAATTCAA----
CNCNTTAATTAATTANN
A C G T T A G C A G T C A G T C A G T C A G C T C T G A T C G A A G C T A C G T A G T C C G T A G T C A A C G T A C G T A C G T A C G T
T G A C A T C G A G T C T C A G A G C T G A C T T C G A C G T A G A C T A C G T C T G A C T G A A C G T A G C T C G T A A G C T A C T G

PH0090.1_Lbx2/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-VCCYTAATTCAA----
TGCATTAATTAATGCGA
A C G T T A G C A G T C A G T C A G T C A G C T C T G A T C G A A G C T A C G T A G T C C G T A G T C A A C G T A C G T A C G T A C G T
C G A T T A C G G T A C G T C A G A C T G A C T C G T A T C G A A G C T C G A T C T G A C T G A A G C T A C T G T A G C C T A G T C G A

ARGFX/MA1463.1/Jaspar

Match Rank:6
Score:0.65
Offset:2
Orientation:forward strand
Alignment:VCCYTAATTCAA
--TCTAATTAAA
T A G C A G T C A G T C A G T C A G C T C T G A T C G A A G C T A C G T A G T C C G T A G T C A
A C G T A C G T C A G T G A T C G A C T G T C A C G T A A C G T A G C T C T G A C T G A G T C A

Alx4/MA0853.1/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-VCCYTAATTCAA----
CGCATTAATTAATTACC
A C G T T A G C A G T C A G T C A G T C A G C T C T G A T C G A A G C T A C G T A G T C C G T A G T C A A C G T A C G T A C G T A C G T
T G A C A T C G G A T C C T G A G A C T G A C T T C G A C G T A G A C T A C G T C T G A C T G A A G C T G C A T G T C A A T G C A G T C

PH0002.1_Alx4/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-VCCYTAATTCAA----
CGCATTAATTAATTACC
A C G T T A G C A G T C A G T C A G T C A G C T C T G A T C G A A G C T A C G T A G T C C G T A G T C A A C G T A C G T A C G T A C G T
T G A C A T C G G A T C C T G A G A C T G A C T T C G A C G T A G A C T A C G T C T G A C T G A A G C T G C A T G T C A A T G C A G T C

mix-a/MA0621.1/Jaspar

Match Rank:9
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:VCCYTAATTCAA-
--NCTAATTAANN
T A G C A G T C A G T C A G T C A G C T C T G A T C G A A G C T A C G T A G T C C G T A G T C A A C G T
A C G T A C G T G T C A G A T C A C G T C G T A C G T A A C G T A C G T C G T A C T G A G A C T A C G T

LMX1B/MA0703.2/Jaspar

Match Rank:10
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:VCCYTAATTCAA--
---TTAATTAAANT
T A G C A G T C A G T C A G T C A G C T C T G A T C G A A G C T A C G T A G T C C G T A G T C A A C G T A C G T
A C G T A C G T A C G T C A G T A C G T C G T A C G T A A C G T A C G T C G T A T C G A G C T A G C T A G A C T