Information for 5-CCCAGTTTTACT (Motif 5)

A G T C A G T C A G T C C G T A A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G A C G T C G T A C G T A C G T A C G T A A G T C A C G T A C T G A C T G A C T G
p-value:1e-4
log p-value:-1.027e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets10.0 +/- 0.0bp
Average Position of motif in Background117.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Prdm15/MA1616.1/Jaspar

Match Rank:1
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCCAGTTTTACT
NNTCCAGGTTTTCCN
A C G T A C G T A C G T A G T C A G T C A G T C C G T A A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T
C T A G A G T C A C G T G A T C G A T C C T G A A C T G T C A G G A C T G A C T A G C T A G C T T G A C G A T C G A C T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCCAGTTTTACT
TGCCCAGNHW----
A C G T A C G T A G T C A G T C A G T C C G T A A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CCCAGTTTTACT-----
-NNANTTTTATTGGNNN
A G T C A G T C A G T C C G T A A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer

Match Rank:4
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------CCCAGTTTTACT
YCCDNTCCAGGTTTT---
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G T C C G T A A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T
A G T C G A T C A G T C C G T A A T C G C A G T A G T C G T A C C T G A A C T G T C A G A G C T A G C T A G C T A G C T A C G T A C G T A C G T

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CCCAGTTTTACT--
----NTTTTATDRG
A G T C A G T C A G T C C G T A A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G G C A T A C G T G C A T G A C T C G T A G A C T C A T G C T A G A T C G

HOXA13/MA0650.2/Jaspar

Match Rank:6
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CCCAGTTTTACT---
----GTTTTATTGGN
A G T C A G T C A G T C C G T A A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G C A G T A C G T A G C T A G C T C G T A A C G T A C G T C T A G A T C G A C T G

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:7
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CCCAGTTTTACT---
---DGWTTTATGRCN
A G T C A G T C A G T C C G T A A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

HOXD13/MA0909.2/Jaspar

Match Rank:8
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CCCAGTTTTACT---
----GTTTTATTGGG
A G T C A G T C A G T C C G T A A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G A C G T A C G T A G C T A C G T C G T A A G C T A C G T A C T G A T C G A T C G

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CCCAGTTTTACT---
---ACTTTCACTTTC
A G T C A G T C A G T C C G T A A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T G A C G C A T A G C T C A G T G A T C G C T A G A T C G A C T A C G T G C A T A G T C

HOXB13/MA0901.2/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CCCAGTTTTACT----
--NNATTTTATTGGNN
A G T C A G T C A G T C C G T A A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C G T A C G T A C G A T C G A T C G A T G C A T T G C A G C A T C G A T C T A G C A T G G C A T G C A T