Information for 5-AGAGCCATCCAA (Motif 5)

C G T A A C T G C G T A A C T G A G T C A G T C C G T A A C G T A G T C A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G A C T G C G T A A C G T A C T G A C T G A G T C A C G T A G T C A C G T
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets181.0 +/- 0.0bp
Average Position of motif in Background70.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0064.1_Hoxb9/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGAGCCATCCAA----
AGAGCCATAAAATTCG
C G T A A C T G C G T A A C T G A G T C A G T C C G T A A C G T A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

PB0098.1_Zfp410_1/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGAGCCATCCAA-----
NNNTCCATCCCATAANN
C G T A A C T G C G T A A C T G A G T C A G T C C G T A A C G T A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G C A T G T C A A C G T T G A C G A T C G C T A A G C T G A T C G A T C G A T C C G T A C A G T G C T A G T C A A G C T G C T A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AGAGCCATCCAA
--GGCCATTAAC
C G T A A C T G C G T A A C T G A G T C A G T C C G T A A C G T A G T C A G T C C G T A C G T A
A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

PB0029.1_Hic1_1/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AGAGCCATCCAA--
ACTATGCCAACCTACC
A C G T A C G T C G T A A C T G C G T A A C T G A G T C A G T C C G T A A C G T A G T C A G T C C G T A C G T A A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

PB0167.1_Sox13_2/Jaspar

Match Rank:5
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--AGAGCCATCCAA---
ANNTNCCCACCCANNAC
A C G T A C G T C G T A A C T G C G T A A C T G A G T C A G T C C G T A A C G T A G T C A G T C C G T A C G T A A C G T A C G T A C G T
G T C A C G T A C G A T C G A T C G T A G T A C G T A C T A G C C G T A G A T C G T A C G T A C C T G A C T G A G A C T G C T A G A T C

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AGAGCCATCCAA
-CAGCC------
C G T A A C T G C G T A A C T G A G T C A G T C C G T A A C G T A G T C A G T C C G T A C G T A
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

FOSL2/MA0478.1/Jaspar

Match Rank:7
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-AGAGCCATCCAA
NTGAGTCATCN--
A C G T C G T A A C T G C G T A A C T G A G T C A G T C C G T A A C G T A G T C A G T C C G T A C G T A
T G C A A C G T A C T G C G T A T A C G A G C T A G T C C G T A G A C T A G T C T G A C A C G T A C G T

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.53
Offset:2
Orientation:forward strand
Alignment:AGAGCCATCCAA
--RGCAATNAAA
C G T A A C T G C G T A A C T G A G T C A G T C C G T A A C G T A G T C A G T C C G T A C G T A
A C G T A C G T C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A

ZNF16/MA1654.1/Jaspar

Match Rank:9
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----AGAGCCATCCAA------
AATAGGGAGCCATGGAAGGTTTT
A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C T G A G T C A G T C C G T A A C G T A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T G C A T C G A A C G T C T G A C T A G C A T G A T C G C T G A C T A G G A T C G A T C T G C A A G C T C A T G T C A G T C G A C T G A C T A G C T A G A G C T A C G T A G C T A G C T

Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer

Match Rank:10
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--AGAGCCATCCAA
GATGAGTCATCC--
A C G T A C G T C G T A A C T G C G T A A C T G A G T C A G T C C G T A A C G T A G T C A G T C C G T A C G T A
C T A G T C G A G A C T A C T G C G T A A T C G C G A T T G A C C G T A A G C T G A T C G T A C A C G T A C G T