Information for 3-TCACCCTTGTTA (Motif 5)

A C G T A G T C C G T A A G T C A G T C A G T C A C G T A C G T A C T G A C G T A C G T C G T A
Reverse Opposite:
A C G T C G T A C G T A A G T C C G T A C G T A A C T G A C T G A C T G A C G T A C T G C G T A
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets37.0 +/- 0.0bp
Average Position of motif in Background11.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX3(var.2)/MA1546.1/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TCACCCTTGTTA-
CCGTCACGCTAATTAA
A C G T A C G T A C G T A C G T A G T C C G T A A G T C A G T C A G T C A C G T A C G T A C T G A C G T A C G T C G T A A C G T
A G T C A T G C A C T G G C A T A G T C C T G A G A T C T C A G A T G C G A C T G C T A T C G A G C A T G A C T C G T A T C G A

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.64
Offset:3
Orientation:forward strand
Alignment:TCACCCTTGTTA
---CCWTTGTY-
A C G T A G T C C G T A A G T C A G T C A G T C A C G T A C G T A C T G A C G T A C G T C G T A
A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TCACCCTTGTTA-----
--NCNTTTGTTATTTNN
A C G T A G T C C G T A A G T C A G T C A G T C A C G T A C G T A C T G A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TCACCCTTGTTA-
---CCATTGTTYB
A C G T A G T C C G T A A G T C A G T C A G T C A C G T A C G T A C T G A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:5
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TCACCCTTGTTA-
---CCWTTGTYYB
A C G T A G T C C G T A A G T C A G T C A G T C A C G T A C G T A C T G A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TCACCCTTGTTA
--NCCATTGTTC
A C G T A G T C C G T A A G T C A G T C A G T C A C G T A C G T A C T G A C G T A C G T C G T A
A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TCACCCTTGTTA-
---CCATTGTTNY
A C G T A G T C C G T A A G T C A G T C A G T C A C G T A C G T A C T G A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:8
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TCACCCTTGTTA
--NCCATTGTTY
A C G T A G T C C G T A A G T C A G T C A G T C A C G T A C G T A C T G A C G T A C G T C G T A
A C G T A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

SOX4/MA0867.2/Jaspar

Match Rank:9
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TCACCCTTGTTA
--NCCTTTGTTC
A C G T A G T C C G T A A G T C A G T C A G T C A C G T A C G T A C T G A C G T A C G T C G T A
A C G T A C G T A G T C A G T C G A T C C G A T A G C T A G C T T A C G C G A T A G C T G A T C

SOX2/MA0143.4/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TCACCCTTGTTA
-NNCCATTGTNN
A C G T A G T C C G T A A G T C A G T C A G T C A C G T A C G T A C T G A C G T A C G T C G T A
A C G T C G A T G C A T G A T C G A T C G C T A A G C T C G A T C T A G C G A T G C A T G C A T