Information for 6-GAGTTTTACT (Motif 9)

A C T G C G T A A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G A C G T C G T A C G T A C G T A C G T A A G T C A C G T A G T C
p-value:1e-3
log p-value:-7.492e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif52.2
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets81.0 +/- 0.0bp
Average Position of motif in Background97.2 +/- 80.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GAGTTTTACT-----
GACTTTTAWTTTGAA
A C T G C G T A A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C T G A A G T C G A C T G A C T G A C T A C G T C T G A G C A T C A G T G A C T C G A T T C A G C T G A G T C A

PH0078.1_Hoxd13/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GAGTTTTACT-----
NNANTTTTATTGGNNN
A C G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GAGTTTTACT--
--NTTTTATDRG
A C T G C G T A A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C G T A C G T
A C G T A C G T C T A G G C A T A C G T G C A T G A C T C G T A G A C T C A T G C T A G A T C G

PH0057.1_Hoxb13/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GAGTTTTACT-----
NNAATTTTATTGGNTN
A C G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

HOXA13/MA0650.2/Jaspar

Match Rank:5
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GAGTTTTACT---
--GTTTTATTGGN
A C T G C G T A A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T C A T G C A G T A C G T A G C T A G C T C G T A A C G T A C G T C T A G A T C G A C T G

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GAGTTTTACT---
-DGWTTTATGRCN
A C T G C G T A A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T
A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

PH0075.1_Hoxd10/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GAGTTTTACT-----
NTNAATTTTATTGNATT
A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

HOXD13/MA0909.2/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GAGTTTTACT---
--GTTTTATTGGG
A C T G C G T A A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C T G A C G T A C G T A G C T A C G T C G T A A G C T A C G T A C T G A T C G A T C G

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GAGTTTTACT---
-ACTTTCACTTTC
A C T G C G T A A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T
A C G T T C G A T G A C G C A T A G C T C A G T G A T C G C T A G A T C G A C T A C G T G C A T A G T C

HOXB13/MA0901.2/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GAGTTTTACT----
NNATTTTATTGGNN
A C T G C G T A A C T G A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T
C G T A C G T A C G T A C G A T C G A T C G A T G C A T T G C A G C A T C G A T C T A G C A T G G C A T G C A T