Information for 5-CCAATCCTTGGG (Motif 7)

A G T C A G T C C G T A C G T A A C G T A G T C A G T C A C G T A C G T A C T G A C T G A C T G
Reverse Opposite:
A G T C A G T C A G T C C G T A C G T A A C T G A C T G C G T A A C G T A C G T A C T G A C T G
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets102.0 +/- 0.0bp
Average Position of motif in Background41.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFYC/MA1644.1/Jaspar

Match Rank:1
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCAATCCTTGGG
AGCCAATCAGA---
A C G T A C G T A G T C A G T C C G T A C G T A A C G T A G T C A G T C A C G T A C G T A C T G A C T G A C T G
T C G A C T A G A G T C G T A C G C T A T C G A G A C T T A G C T C G A T A C G T G C A A C G T A C G T A C G T

EBF3/MA1637.1/Jaspar

Match Rank:2
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CCAATCCTTGGG--
-NNTCCCTTGGGAN
A G T C A G T C C G T A C G T A A C G T A G T C A G T C A C G T A C G T A C T G A C T G A C T G A C G T A C G T
A C G T C G T A A C G T A G C T A G T C G A T C A G T C G A C T C A G T C T A G C T A G A T C G T C G A T G C A

OTX2/MA0712.2/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CCAATCCTTGGG
NNCTAATCCCNN--
A C G T A C G T A G T C A G T C C G T A C G T A A C G T A G T C A G T C A C G T A C G T A C T G A C T G A C T G
G C A T G C A T G A T C G C A T C G T A G T C A C A G T G A T C G A T C G A T C G C A T C G A T A C G T A C G T

Ebf2/MA1604.1/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CCAATCCTTGGG--
-NNTCCCTTGGGAN
A G T C A G T C C G T A C G T A A C G T A G T C A G T C A C G T A C G T A C T G A C T G A C T G A C G T A C G T
A C G T C T G A A C T G A G C T G A T C G A T C A G T C G A C T C A G T C T A G C T A G A T C G T C G A T G C A

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCAATCCTTGGG
NYTAATCCYB---
A C G T A G T C A G T C C G T A C G T A A C G T A G T C A G T C A C G T A C G T A C T G A C T G A C T G
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T A C G T A C G T

NFYA/MA0060.3/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CCAATCCTTGGG
AACCAATCAGA---
A C G T A C G T A G T C A G T C C G T A C G T A A C G T A G T C A G T C A C G T A C G T A C T G A C T G A C T G
T C G A C T G A A G T C G A T C G C T A T C G A G A C T T A G C T C G A T A C G T G C A A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CCAATCCTTGGG
GCTAATCC-----
A C G T A G T C A G T C C G T A C G T A A C G T A G T C A G T C A C G T A C G T A C T G A C T G A C T G
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:8
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CCAATCCTTGGG
ACTAGCCAATCA-----
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A G T C A G T C A C G T A C G T A C T G A C T G A C T G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CCAATCCTTGGG
GCTAATCCCC---
A C G T A G T C A G T C C G T A C G T A A C G T A G T C A G T C A C G T A C G T A C T G A C T G A C T G
T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C A C G T A C G T A C G T

PITX1/MA0682.2/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCAATCCTTGGG
CTAATCCC----
A G T C A G T C C G T A C G T A A C G T A G T C A G T C A C G T A C G T A C T G A C T G A C T G
G A T C A C G T C G T A C G T A A C G T G T A C A G T C G T A C A C G T A C G T A C G T A C G T