Information for 4-ACATGAGCTACA (Motif 5)

C G T A A G T C C G T A A C G T A C T G C G T A A C T G A G T C A C G T C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T C G T A A C T G A G T C A C G T A G T C C G T A A C G T A C T G A C G T
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MXI1/MA1108.2/Jaspar

Match Rank:1
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---ACATGAGCTACA
GACACATGGC-----
A C G T A C G T A C G T C G T A A G T C C G T A A C G T A C T G C G T A A C T G A G T C A C G T C G T A A G T C C G T A
C T A G T C G A G A T C C T G A A G T C C T G A A G C T C T A G A C T G A T G C A C G T A C G T A C G T A C G T A C G T

PKNOX1/MA0782.2/Jaspar

Match Rank:2
Score:0.55
Offset:1
Orientation:forward strand
Alignment:ACATGAGCTACA----
-TTTGAGTGACAGCTA
C G T A A G T C C G T A A C G T A C T G C G T A A C T G A G T C A C G T C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T C G A T G C A T C G A T T C A G C T G A A C T G C G A T A T C G C T G A G A T C C G T A A C T G T A G C A G C T C T G A

RORA/MA0071.1/Jaspar

Match Rank:3
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:ACATGAGCTACA-
---TGACCTTGAT
C G T A A G T C C G T A A C G T A C T G C G T A A C T G A G T C A C G T C G T A A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:4
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:ACATGAGCTACA----
--TTGACCTANTTATN
C G T A A G T C C G T A A C G T A C T G C G T A A C T G A G T C A C G T C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

DMRTA2/MA1478.1/Jaspar

Match Rank:5
Score:0.55
Offset:2
Orientation:forward strand
Alignment:ACATGAGCTACA--
--AATTGTTACATT
C G T A A G T C C G T A A C G T A C T G C G T A A C T G A G T C A C G T C G T A A G T C C G T A A C G T A C G T
A C G T A C G T G C T A C G T A G C A T A G C T A C T G G C A T G C A T C T G A A G T C C G T A C G A T A C G T

PH0083.1_Irx3_1/Jaspar

Match Rank:6
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----ACATGAGCTACA
AAAATACATGTAATACT
A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A A C G T A C T G C G T A A C T G A G T C A C G T C G T A A G T C C G T A
C G T A C T G A C G A T C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A T G C A C G A T C G T A G A T C C G A T

USF2/MA0526.3/Jaspar

Match Rank:7
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----ACATGAGCTACA
NNGTCACATGACNN---
A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A A C G T A C T G C G T A A C T G A G T C A C G T C G T A A G T C C G T A
C G T A C T A G T C A G A G C T T A G C G T C A A G T C T C G A C A G T T A C G T C G A A G T C G A T C G T C A A C G T A C G T A C G T

PB0050.1_Osr1_1/Jaspar

Match Rank:8
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----ACATGAGCTACA
ATTTACAGTAGCAAAA
A C G T A C G T A C G T A C G T C G T A A G T C C G T A A C G T A C T G C G T A A C T G A G T C A C G T C G T A A G T C C G T A
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-ACATGAGCTACA--
NNHYTGACCTAGWTT
A C G T C G T A A G T C C G T A A C G T A C T G C G T A A C T G A G T C A C G T C G T A A G T C C G T A A C G T A C G T
A C G T G A T C G A C T G A T C A C G T A C T G T C G A A G T C A G T C A G C T C T G A T C A G C G A T C G A T G C A T

PBX3/MA1114.1/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:ACATGAGCTACA-----
GGGTGAGTGACAGGCGG
C G T A A G T C C G T A A C G T A C T G C G T A A C T G A G T C A C G T C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
T A C G A C T G A C T G C G A T T C A G C G T A A C T G C A G T T A C G C T G A T A G C C T G A A C T G T A C G A T G C T C A G A T C G