Information for 2-ATAAAAGGATAT (Motif 2)

C G T A A C G T C G T A C G T A C G T A C G T A A C T G A C T G C G T A A C G T C G T A A C G T
Reverse Opposite:
C G T A A C G T C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T C G T A A C G T
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets32.0 +/- 0.0bp
Average Position of motif in Background157.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.80
Offset:4
Orientation:reverse strand
Alignment:ATAAAAGGATAT---
----AAGGATATNTN
C G T A A C G T C G T A C G T A C G T A C G T A A C T G A C T G C G T A A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

TATA-Box(TBP)/Promoter/Homer

Match Rank:2
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----ATAAAAGGATAT
GNCTATAAAAGG----
A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A C T G A C T G C G T A A C G T C G T A A C G T
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T A C G T A C G T A C G T

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:3
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----ATAAAAGGATAT
NNNAGATCAAAGGANNN
A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A C T G A C T G C G T A A C G T C G T A A C G T
A C G T G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C T A G C A T

PB0082.1_Tcf3_1/Jaspar

Match Rank:4
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----ATAAAAGGATAT
TATAGATCAAAGGAAAA
A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A C T G A C T G C G T A A C G T C G T A A C G T
G A C T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G C T A G C T A G C T A

PB0181.1_Spdef_2/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:ATAAAAGGATAT----
CTACTAGGATGTNNTN
C G T A A C G T C G T A C G T A C G T A C G T A A C T G A C T G C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A G T C G C A T C G T A T G A C C G A T T C G A T A C G C A T G C G T A G A C T C T A G G A C T C G A T T C G A G C A T G A T C

PB0083.1_Tcf7_1/Jaspar

Match Rank:6
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----ATAAAAGGATAT
TATAGATCAAAGGAAAA
A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A C T G A C T G C G T A A C G T C G T A A C G T
A C G T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C A T G C T A

PB0040.1_Lef1_1/Jaspar

Match Rank:7
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----ATAAAAGGATAT
NANAGATCAAAGGGNNN
A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A C T G A C T G C G T A A C G T C G T A A C G T
A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T

LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--ATAAAAGGATAT
ASATCAAAGG----
A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A C T G A C T G C G T A A C G T C G T A A C G T
C T G A A T C G G C T A G C A T T A G C C G T A T C G A C T G A T C A G T A C G A C G T A C G T A C G T A C G T

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----ATAAAAGGATAT
NCYAATAAAA------
A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A C T G A C T G C G T A A C G T C G T A A C G T
C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:10
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---ATAAAAGGATAT
GTCATAAAAN-----
A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A C T G A C T G C G T A A C G T C G T A A C G T
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T A C G T A C G T