Information for 21-GAATGGCTGC (Motif 27)

A C T G C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C C G T A A C T G A G T C A G T C C G T A A C G T A C G T A G T C
p-value:1e-3
log p-value:-6.958e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif43.5
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets183.0 +/- 0.0bp
Average Position of motif in Background101.8 +/- 62.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZFP42/MA1651.1/Jaspar

Match Rank:1
Score:0.75
Offset:-6
Orientation:forward strand
Alignment:------GAATGGCTGC-----
GTTCCAAAATGGCTGCCTCCG
A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A T C G G C A T G C A T G T A C G T A C C T G A C G T A T C G A C T G A A G C T T A C G A C T G G T A C A C G T A T C G G A T C A G T C G A C T A T G C A T G C T C A G

YY2/MA0748.2/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GAATGGCTGC-
AGATGGCGGCG
A C T G C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C T G A G T C A C G T
G T C A T A C G T C G A A G C T T A C G C T A G G A T C A T C G T A C G G T A C T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GAATGGCTGC-
TGATTGGCTANN
A C G T A C T G C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C T G A G T C A C G T
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

YY1/MA0095.2/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GAATGGCTGC
CAAGATGGCGGC
A C G T A C G T A C T G C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C T G A G T C
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:5
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GAATGGCTGC
GTCATGCHTGRCTGS
A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C T G A G T C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GAATGGCTGC
GTTAATGGCC--
A C G T A C G T A C T G C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C T G A G T C
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T

ZNF528/MA1597.1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GAATGGCTGC------
GAAATGGCTTCCCTGGG
A C G T A C T G C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T C G A T C G A C T G A A G C T C A T G T C A G G A T C G A C T A C G T A G T C G A T C G A T C G A C T A C T G T C A G C T A G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GAATGGCTGC
--TWGTCTGV
A C T G C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C T G A G T C
A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

YY1(Zf)/Promoter/Homer

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GAATGGCTGC
CAAGATGGCGGC
A C G T A C G T A C T G C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C T G A G T C
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

NFY(CCAAT)/Promoter/Homer

Match Rank:10
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GAATGGCTGC
CCGATTGGCT--
A C G T A C G T A C T G C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C T G A G T C
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T A C G T