| p-value: | 1e-4 |
| log p-value: | -9.246e+00 |
| Information Content per bp: | 1.530 |
| Number of Target Sequences with motif | 1.0 |
| Percentage of Target Sequences with motif | 100.00% |
| Number of Background Sequences with motif | 9.3 |
| Percentage of Background Sequences with motif | 0.01% |
| Average Position of motif in Targets | 89.0 +/- 0.0bp |
| Average Position of motif in Background | 156.7 +/- 41.8bp |
| Strand Bias (log2 ratio + to - strand density) | 10.0 |
| Multiplicity (# of sites on avg that occur together) | 1.00 |
| Motif File: | file (matrix) reverse opposite |
| SVG Files for Logos: | forward logo reverse opposite |
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer
| Match Rank: | 1 |
| Score: | 0.64 |
| Offset: | -2 |
| Orientation: | forward strand |
| Alignment: | --CCATACACCA GGCCATAAATCA |
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PB0060.1_Smad3_1/Jaspar
| Match Rank: | 2 |
| Score: | 0.64 |
| Offset: | -5 |
| Orientation: | forward strand |
| Alignment: | -----CCATACACCA-- CAAATCCAGACATCACA |
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|
HOXD13/MA0909.2/Jaspar
| Match Rank: | 3 |
| Score: | 0.63 |
| Offset: | -2 |
| Orientation: | forward strand |
| Alignment: | --CCATACACCA CCCAATAAAAC- |
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PBX2/MA1113.2/Jaspar
| Match Rank: | 4 |
| Score: | 0.63 |
| Offset: | -1 |
| Orientation: | forward strand |
| Alignment: | -CCATACACCA-- GTCATAAATCATT |
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|
|
MEIS2(var.2)/MA1640.1/Jaspar
| Match Rank: | 5 |
| Score: | 0.62 |
| Offset: | -2 |
| Orientation: | reverse strand |
| Alignment: | --CCATACACCA--- NNCCATAAATCATNN |
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|
|
CDX1/MA0878.2/Jaspar
| Match Rank: | 6 |
| Score: | 0.61 |
| Offset: | -2 |
| Orientation: | forward strand |
| Alignment: | --CCATACACCA GGCCATAAAAC- |
|
|
|
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer
| Match Rank: | 7 |
| Score: | 0.61 |
| Offset: | 0 |
| Orientation: | reverse strand |
| Alignment: | CCATACACCA YCATCMATCA |
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|
|
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer
| Match Rank: | 8 |
| Score: | 0.60 |
| Offset: | -1 |
| Orientation: | forward strand |
| Alignment: | -CCATACACCA- GYCATCMATCAT |
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|
|
MEIS1(var.2)/MA1639.1/Jaspar
| Match Rank: | 9 |
| Score: | 0.58 |
| Offset: | -1 |
| Orientation: | forward strand |
| Alignment: | -CCATACACCA-- GTCATCAATCATT |
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|
|
HOXA13/MA0650.2/Jaspar
| Match Rank: | 10 |
| Score: | 0.58 |
| Offset: | -2 |
| Orientation: | forward strand |
| Alignment: | --CCATACACCA CCCAATAAAAC- |
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