Information for 2-CTCTTAAGTTAG (Motif 2)

A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C T G A C G T A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A C G T A A G T C A C G T A C G T C G T A C G T A A C T G C G T A A C T G
p-value:1e-4
log p-value:-1.043e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets13.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:1
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CTCTTAAGTTAG-
GACTTTTAWTTTGAA
A C G T A C G T A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C T G A C G T A C G T C G T A A C T G A C G T
C T A G C T G A A G T C G A C T G A C T G A C T A C G T C T G A G C A T C A G T G A C T C G A T T C A G C T G A G T C A

PB0176.1_Sox5_2/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTCTTAAGTTAG--
TATCATAATTAAGGA
A C G T A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C T G A C G T A C G T C G T A A C T G A C G T A C G T
C G A T G C T A C G A T A G T C C T G A C A G T T G C A G C T A G C A T G A C T C G T A T G C A T A C G C A T G C G T A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CTCTTAAGTTAG
RSCACTYRAG----
A C G T A C G T A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C T G A C G T A C G T C G T A A C T G
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CTCTTAAGTTAG
NSCACTYVAV----
A C G T A C G T A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C T G A C G T A C G T C G T A A C T G
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CTCTTAAGTTAG
AASCACTCAA-----
A C G T A C G T A C G T A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C T G A C G T A C G T C G T A A C T G
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CTCTTAAGTTAG
ACCACTTAA-----
A C G T A C G T A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C T G A C G T A C G T C G T A A C T G
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T

PH0167.1_Tcf1/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CTCTTAAGTTAG------
-NTTTTAGTTAACNNAGN
A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C T G A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T G C A G A C T G C A T A C G T G A C T C T G A A T C G G C A T C G A T C G T A C T G A T A G C A G C T T C G A T G C A T A C G C T A G

Nkx3-2/MA0122.3/Jaspar

Match Rank:8
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CTCTTAAGTTAG
ATAACCACTTAAA----
A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C T G A C G T A C G T C G T A A C T G
C G T A C G A T C G T A C G T A T G A C G A T C G C T A G T A C G C A T G A C T G C T A C G T A G C T A A C G T A C G T A C G T A C G T

PB0081.1_Tcf1_1/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CTCTTAAGTTAG------
-NNNTTAGTTAACTNANN
A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C T G A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G A C T C A G T G A C T A G C T G A C T C T G A T A C G G A C T C G A T C G T A C G T A A G T C A G C T C T G A T C G A C T A G A C G T

FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CTCTTAAGTTAG-
-TGTTTAYTTAGC
A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C T G A C G T A C G T C G T A A C T G A C G T
A C G T C G A T C T A G A C G T A C G T A C G T C G T A A G C T C G A T A G C T C G T A C T A G T A G C