Information for 4-AATTAACTACTC (Motif 5)

C G T A C G T A A C G T A C G T C G T A C G T A A G T C A C G T C G T A A G T C A C G T A G T C
Reverse Opposite:
A C T G C G T A A C T G A C G T C G T A A C T G A C G T A C G T C G T A C G T A A C G T A C G T
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx3/MA0135.1/Jaspar

Match Rank:1
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-AATTAACTACTC
AAATTAATTAATC
A C G T C G T A C G T A A C G T A C G T C G T A C G T A A G T C A C G T C G T A A G T C A C G T A G T C
C G T A T C G A C G T A A C G T A C G T C G T A C G T A G A C T A G C T G C T A C G T A G A C T A G T C

PH0154.1_Prrx1/Jaspar

Match Rank:2
Score:0.74
Offset:-6
Orientation:forward strand
Alignment:------AATTAACTACTC
GTAACTAATTAACTACT-
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T C G T A C G T A A G T C A C G T C G T A A G T C A C G T A G T C
T A C G A C G T G T C A T C G A A G T C G A C T T C G A C T G A A G C T A G C T C T G A T C G A A G T C C A G T C T G A T A G C A G C T A C G T

PH0118.1_Nkx6-1_1/Jaspar

Match Rank:3
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---AATTAACTACTC--
GAAAATTAATTACTTCG
A C G T A C G T A C G T C G T A C G T A A C G T A C G T C G T A C G T A A G T C A C G T C G T A A G T C A C G T A G T C A C G T A C G T
C T A G T G C A G C T A C G T A C G T A C G A T A G C T C G T A C G T A C G A T A C G T C T G A G T A C G A C T A G C T A G T C A T C G

PH0142.1_Pou1f1/Jaspar

Match Rank:4
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----AATTAACTACTC
GANTTAATTAATTANNN
A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T C G T A C G T A A G T C A C G T C G T A A G T C A C G T A G T C
T A C G G C T A G A T C G C A T C G A T G T C A G C T A C G A T C G A T C G T A C G T A C G A T C A G T G T C A G C T A A G C T G A T C

PH0120.1_Nkx6-3/Jaspar

Match Rank:5
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---AATTAACTACTC--
GAAAATTAATTACTTTG
A C G T A C G T A C G T C G T A C G T A A C G T A C G T C G T A C G T A A G T C A C G T C G T A A G T C A C G T A G T C A C G T A C G T
C T A G T G C A G C A T C G T A G C T A C G A T G A C T C G T A C G T A C G A T A C G T C T G A T G A C A G C T A C G T A G C T A C T G

PH0119.1_Nkx6-1_2/Jaspar

Match Rank:6
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---AATTAACTACTC-
AGTAATTAATTACTTC
A C G T A C G T A C G T C G T A C G T A A C G T A C G T C G T A C G T A A G T C A C G T C G T A A G T C A C G T A G T C A C G T
T C G A T C A G G A C T G C T A C G T A C G A T A G C T C G T A C G T A C G A T A C G T C T G A A G T C A C G T G A C T A G T C

PH0038.1_Hlx/Jaspar

Match Rank:7
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----AATTAACTACTC
CCATAATTAATTACA-
A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T C G T A C G T A A G T C A C G T C G T A A G T C A C G T A G T C
G T A C G T A C G T C A G A C T G C T A C G T A G A C T G C A T C T G A C T G A G C A T C G A T C T G A G A T C G T C A A C G T

HMBOX1/MA0895.1/Jaspar

Match Rank:8
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:AATTAACTACTC
-GTTAACTAGN-
C G T A C G T A A C G T A C G T C G T A C G T A A G T C A C G T C G T A A G T C A C G T A G T C
A C G T A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T A C G T

PH0146.1_Pou3f1/Jaspar

Match Rank:9
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----AATTAACTACTC
NANTTAATTAATTANNN
A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T C G T A C G T A A G T C A C G T C G T A A G T C A C G T A G T C
C A T G G C T A T G C A A G C T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G T C A T C G A A C G T G A C T

PH0149.1_Pou3f4/Jaspar

Match Rank:10
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----AATTAACTACTC-
AATTAATTAATTAATTC
A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T C G T A C G T A A G T C A C G T C G T A A G T C A C G T A G T C A C G T
C T G A T G C A G C A T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G C T A C T G A C A G T C G A T A G T C