Information for 6-TGTAGGCCAT (Motif 28)

A C G T A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G A C T G A G T C A G T C A C G T C G T A A G T C C G T A
p-value:1e-3
log p-value:-8.525e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif9.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets160.0 +/- 0.0bp
Average Position of motif in Background115.8 +/- 45.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TGTAGGCCAT---
AAWCTAGGTCARDNN
A C G T A C G T A C G T A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T
C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A

RORC/MA1151.1/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TGTAGGCCAT
ATAAGTAGGTCA-
A C G T A C G T A C G T A C G T A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A A C G T
C T G A C G A T G C T A C G T A A C T G A C G T T C G A C A T G C T A G A C G T A G T C C T G A A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TGTAGGCCAT
-CTAGGCCT-
A C G T A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A A C G T
A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T

RORB/MA1150.1/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGTAGGCCAT
AATTAGGTCAC
A C G T A C G T A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A A C G T
C G T A G C T A C G A T A C G T C T G A A C T G C T A G A G C T G A T C C T G A G A T C

PB0094.1_Zfp128_1/Jaspar

Match Rank:5
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TGTAGGCCAT---
TTNGGGTACGCCNNANN
A C G T A C G T A C G T A C G T A C G T A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T
G A C T C A G T C T G A T C A G A T C G A C T G A C G T C G T A A G T C C T A G G A T C G T A C G T C A G T C A C G T A C T A G T G C A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGTAGGCCAT
AAYTAGGTCA-
A C G T A C G T A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A A C G T
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGTAGGCCAT
AAYTAGGTCA-
A C G T A C G T A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A A C G T
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TGTAGGCCAT
-CNAGGCCT-
A C G T A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A A C G T
A C G T A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T

RORA/MA0071.1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGTAGGCCAT
ATCAAGGTCA-
A C G T A C G T A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A A C G T
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----TGTAGGCCAT
TATAAGTAGGTCAA
A C G T A C G T A C G T A C G T A C G T A C T G A C G T C G T A A C T G A C T G A G T C A G T C C G T A A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A