Information for 2-GCACGCTGTA (Motif 2)

A C T G A G T C C G T A A G T C A C T G A G T C A C G T A C T G A C G T C G T A
Reverse Opposite:
A C G T C G T A A G T C C G T A A C T G A G T C A C T G A C G T A C T G A G T C
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets13.0 +/- 0.0bp
Average Position of motif in Background105.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0158.1_Rhox11_2/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GCACGCTGTA------
AGGACGCTGTAAAGGGA
A C G T A C T G A G T C C G T A A G T C A C T G A G T C A C G T A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

Rhox11/MA0629.1/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GCACGCTGTA------
AAGACGCTGTAAAGCGA
A C G T A C T G A G T C C G T A A G T C A C T G A G T C A C G T A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GCACGCTGTA------
AAGACGCTGTAAAGCGA
A C G T A C T G A G T C C G T A A G T C A C T G A G T C A C G T A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GCACGCTGTA
-CACGCA---
A C T G A G T C C G T A A G T C A C T G A G T C A C G T A C T G A C G T C G T A
A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GCACGCTGTA
TBGCACGCAA--
A C G T A C G T A C T G A G T C C G T A A G T C A C T G A G T C A C G T A C T G A C G T C G T A
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCACGCTGTA-
-CCTGCTGAGH
A C T G A G T C C G T A A G T C A C T G A G T C A C G T A C T G A C G T C G T A A C G T
A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GCACGCTGTA---
NNTCCTGCTGTGNNN
A C G T A C G T A C T G A G T C C G T A A G T C A C T G A G T C A C G T A C T G A C G T C G T A A C G T A C G T A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.61
Offset:4
Orientation:forward strand
Alignment:GCACGCTGTA
----GCTGTG
A C T G A G T C C G T A A G T C A C T G A G T C A C G T A C T G A C G T C G T A
A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCACGCTGTA
GCACGTNC--
A C T G A G T C C G T A A G T C A C T G A G T C A C G T A C T G A C G T C G T A
A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C A C G T A C G T

ZSCAN4/MA1155.1/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GCACGCTGTA--
TGCACACACTGAAAA
A C G T A C G T A C G T A C T G A G T C C G T A A G T C A C T G A G T C A C G T A C T G A C G T C G T A A C G T A C G T
G A C T T C A G A T G C C G T A A G T C C G T A G A T C T G C A G T A C A C G T A C T G C G T A G T C A C T G A C T G A