Information for 17-AGCCATGCCAAC (Motif 33)

C G T A A C T G A G T C A G T C C G T A A C G T A C T G A G T C A G T C C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T A C T G A C T G A G T C C G T A A C G T A C T G A C T G A G T C A C G T
p-value:1e-1
log p-value:-2.529e+00
Information Content per bp:1.530
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif85.71%
Number of Background Sequences with motif57848.1
Percentage of Background Sequences with motif52.39%
Average Position of motif in Targets134.0 +/- 15.0bp
Average Position of motif in Background100.2 +/- 85.7bp
Strand Bias (log2 ratio + to - strand density)-10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.76
Offset:4
Orientation:forward strand
Alignment:AGCCATGCCAAC-
----ATGCCAACC
C G T A A C T G A G T C A G T C C G T A A C G T A C T G A G T C A G T C C G T A C G T A A G T C A C G T
A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.75
Offset:1
Orientation:forward strand
Alignment:AGCCATGCCAAC-----
-ACTATGCCAACCTACC
C G T A A C T G A G T C A G T C C G T A A C G T A C T G A G T C A G T C C G T A C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

RFX3/MA0798.2/Jaspar

Match Rank:3
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:AGCCATGCCAAC--
TNCCATAGCAACNN
C G T A A C T G A G T C A G T C C G T A A C G T A C T G A G T C A G T C C G T A C G T A A G T C A C G T A C G T
G A C T C A T G A G T C G A T C G T C A A G C T C T G A C T A G G A T C C T G A T C G A G A T C T G A C T C A G

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-AGCCATGCCAAC-
TTGCCATGGCAACN
A C G T C G T A A C T G A G T C A G T C C G T A A C G T A C T G A G T C A G T C C G T A C G T A A G T C A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-AGCCATGCCAAC-
TTGCCATGGCAACC
A C G T C G T A A C T G A G T C A G T C C G T A A C G T A C T G A G T C A G T C C G T A C G T A A G T C A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.69
Offset:3
Orientation:forward strand
Alignment:AGCCATGCCAAC-
---GGTGCCAAGT
C G T A A C T G A G T C A G T C C G T A A C G T A C T G A G T C A G T C C G T A C G T A A G T C A C G T
A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

RFX1/MA0509.2/Jaspar

Match Rank:7
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:AGCCATGCCAAC--
TNCCATAGCAACNN
C G T A A C T G A G T C A G T C C G T A A C G T A C T G A G T C A G T C C G T A C G T A A G T C A C G T A C G T
G A C T C A T G A G T C G A T C G T C A G A C T T C G A C T A G G A T C C T G A T C G A G A T C G T C A T C A G

RFX4/MA0799.1/Jaspar

Match Rank:8
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---AGCCATGCCAAC-
CGTTGCCATGGCAACG
A C G T A C G T A C G T C G T A A C T G A G T C A G T C C G T A A C G T A C T G A G T C A G T C C G T A C G T A A G T C A C G T
A T G C C T A G G C A T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.68
Offset:3
Orientation:forward strand
Alignment:AGCCATGCCAAC
---CGTGCCAAG
C G T A A C T G A G T C A G T C C G T A A C G T A C T G A G T C A G T C C G T A C G T A A G T C
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:10
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--AGCCATGCCAAC--
GTTGCCATGGCAACCG
A C G T A C G T C G T A A C T G A G T C A G T C C G T A A C G T A C T G A G T C A G T C C G T A C G T A A G T C A C G T A C G T
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G