Information for 3-CATGTGTTAGGC (Motif 3)

A G T C C G T A A C G T A C T G A C G T A C T G A C G T A C G T C G T A A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C A C G T C G T A C G T A A G T C C G T A A G T C C G T A A C G T A C T G
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets164.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MXI1/MA1108.2/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CATGTGTTAGGC
NNCATGTGNN----
A C G T A C G T A G T C C G T A A C G T A C T G A C G T A C T G A C G T A C G T C G T A A C T G A C T G A G T C
T A C G T G A C G A T C C T G A A G C T T C A G G A C T C T A G A G C T G A T C A C G T A C G T A C G T A C G T

TFAP4(var.2)/MA1570.1/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CATGTGTTAGGC
AACATATGTT----
A C G T A C G T A G T C C G T A A C G T A C T G A C G T A C T G A C G T A C G T C G T A A C T G A C T G A G T C
T C G A G T C A A G T C C T G A A G C T T C G A A C G T A T C G C A G T A G C T A C G T A C G T A C G T A C G T

Twist2/MA0633.1/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CATGTGTTAGGC
ACCATATGTT----
A C G T A C G T A G T C C G T A A C G T A C T G A C G T A C T G A C G T A C G T C G T A A C T G A C T G A G T C
C T G A G T A C A G T C C G T A A G C T C T G A A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

CLOCK/MA0819.1/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CATGTGTTAGGC
AACACGTGTT----
A C G T A C G T A G T C C G T A A C G T A C T G A C G T A C T G A C G T A C G T C G T A A C T G A C T G A G T C
C T G A T C G A T G A C T C G A A G T C C T A G A G C T A C T G A G C T G A C T A C G T A C G T A C G T A C G T

ATOH7/MA1468.1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CATGTGTTAGGC
GACATATGTT----
A C G T A C G T A G T C C G T A A C G T A C T G A C G T A C T G A C G T A C G T C G T A A C T G A C T G A G T C
C T A G T G C A A G T C T C G A A C G T T C G A G A C T A C T G A C G T A G C T A C G T A C G T A C G T A C G T

TBX4/MA0806.1/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CATGTGTTAGGC
-AGGTGTGA---
A G T C C G T A A C G T A C T G A C G T A C T G A C G T A C G T C G T A A C T G A C T G A G T C
A C G T C T G A T C A G T A C G A G C T A C T G G A C T A C T G C T G A A C G T A C G T A C G T

Atoh1/MA0461.2/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CATGTGTTAGGC
ANCATATGTT----
A C G T A C G T A G T C C G T A A C G T A C T G A C G T A C T G A C G T A C G T C G T A A C T G A C T G A G T C
C T G A T G C A G T A C G C T A A C G T G T C A A G C T A C T G A C G T A G C T A C G T A C G T A C G T A C G T

OLIG1/MA0826.1/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CATGTGTTAGGC
AACATATGTT----
A C G T A C G T A G T C C G T A A C G T A C T G A C G T A C T G A C G T A C G T C G T A A C T G A C T G A G T C
C T G A T G C A G T A C C G T A A C G T T G C A G A C T A C T G A C G T A G C T A C G T A C G T A C G T A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CATGTGTTAGGC
ACCATCTGTT----
A C G T A C G T A G T C C G T A A C G T A C T G A C G T A C T G A C G T A C G T C G T A A C T G A C T G A G T C
T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T A C G T A C G T A C G T A C G T

TBX5/MA0807.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CATGTGTTAGGC
-AGGTGTGA---
A G T C C G T A A C G T A C T G A C G T A C T G A C G T A C G T C G T A A C T G A C T G A G T C
A C G T C T G A T C A G A C T G A C G T C T A G A G C T A C T G C T G A A C G T A C G T A C G T