Information for 1-ACGAGCTATA (Motif 1)

C G T A A G T C A C T G C G T A A C T G A G T C A C G T C G T A A C G T C G T A
Reverse Opposite:
A C G T C G T A A C G T C G T A A C T G A G T C A C G T A G T C A C T G A C G T
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets176.0 +/- 0.0bp
Average Position of motif in Background115.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0048.1_Hoxa13/Jaspar

Match Rank:1
Score:0.57
Offset:-7
Orientation:reverse strand
Alignment:-------ACGAGCTATA
ANATTTTACGAGNNNN-
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C T G C G T A A C T G A G T C A C G T C G T A A C G T C G T A
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T A C G T

HIF1A/MA1106.1/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--ACGAGCTATA
GTACGTGCCC--
A C G T A C G T C G T A A G T C A C T G C G T A A C T G A G T C A C G T C G T A A C G T C G T A
T A C G A G C T C G T A A G T C C T A G A G C T T C A G G T A C A T G C A T G C A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.55
Offset:2
Orientation:forward strand
Alignment:ACGAGCTATA
--CAGCC---
C G T A A G T C A C T G C G T A A C T G A G T C A C G T C G T A A C G T C G T A
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T

HOXC13/MA0907.1/Jaspar

Match Rank:4
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----ACGAGCTATA
NTTTTACGAGN----
A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C T G C G T A A C T G A G T C A C G T C G T A A C G T C G T A
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C A C G T A C G T A C G T A C G T

NR1I3/MA1534.1/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:ACGAGCTATA
ATGAACTTT-
C G T A A G T C A C T G C G T A A C T G A G T C A C G T C G T A A C G T C G T A
C T G A G A C T T C A G G T C A G T C A A G T C A G C T G A C T G C A T A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:6
Score:0.55
Offset:-7
Orientation:reverse strand
Alignment:-------ACGAGCTATA
NAATTTTACGAGNTNN-
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C T G C G T A A C T G A G T C A C G T C G T A A C G T C G T A
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T A C G T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:7
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:ACGAGCTATA-
-DGATCRATAN
C G T A A G T C A C T G C G T A A C T G A G T C A C G T C G T A A C G T C G T A A C G T
A C G T C T A G C T A G C T G A A C G T A G T C C T A G C G T A A C G T G T C A G A T C

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:8
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--ACGAGCTATA
RTACGTGC----
A C G T A C G T C G T A A G T C A C T G C G T A A C T G A G T C A C G T C G T A A C G T C G T A
C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T A C G T A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:9
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----ACGAGCTATA
GGGTACGTGC----
A C G T A C G T A C G T A C G T C G T A A G T C A C T G C G T A A C T G A G T C A C G T C G T A A C G T C G T A
C T A G A T C G T C A G C A G T C T G A A T G C A C T G A G C T A C T G G T A C A C G T A C G T A C G T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--ACGAGCTATA
GGACGTGC----
A C G T A C G T C G T A A G T C A C T G C G T A A C T G A G T C A C G T C G T A A C G T C G T A
T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T A C G T A C G T A C G T