Information for 9-CCAGGTAATCCA (Motif 10)

A G T C A G T C C G T A A C T G A C T G A C G T C G T A C G T A A C G T A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G C G T A A C G T A C G T C G T A A G T C A G T C A C G T A C T G A C T G
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets143.0 +/- 0.0bp
Average Position of motif in Background33.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

DPRX/MA1480.1/Jaspar

Match Rank:1
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CCAGGTAATCCA
--AGATAATCCC
A G T C A G T C C G T A A C T G A C T G A C G T C G T A C G T A A C G T A G T C A G T C C G T A
A C G T A C G T T C G A T A C G G T C A A C G T T G C A C G T A A C G T G T A C A G T C A T G C

PITX1/MA0682.2/Jaspar

Match Rank:2
Score:0.68
Offset:4
Orientation:forward strand
Alignment:CCAGGTAATCCA
----CTAATCCC
A G T C A G T C C G T A A C T G A C T G A C G T C G T A C G T A A C G T A G T C A G T C C G T A
A C G T A C G T A C G T A C G T G A T C A C G T C G T A C G T A A C G T G T A C A G T C G T A C

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:3
Score:0.68
Offset:3
Orientation:forward strand
Alignment:CCAGGTAATCCA
---GCTAATCC-
A G T C A G T C C G T A A C T G A C T G A C G T C G T A C G T A A C G T A G T C A G T C C G T A
A C G T A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CCAGGTAATCCA---
GNNAGCTAATCCCCCN
A C G T A G T C A G T C C G T A A C T G A C T G A C G T C G T A C G T A A C G T A G T C A G T C C G T A A C G T A C G T A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

PITX2/MA1547.1/Jaspar

Match Rank:5
Score:0.68
Offset:4
Orientation:forward strand
Alignment:CCAGGTAATCCA
----ATAATCCC
A G T C A G T C C G T A A C T G A C T G A C G T C G T A C G T A A C G T A G T C A G T C C G T A
A C G T A C G T A C G T A C G T G T C A C G A T C T G A C G T A A C G T A G T C A G T C T G A C

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:6
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CCAGGTAATCCA
VCAGGTRDRY--
A G T C A G T C C G T A A C T G A C T G A C G T C G T A C G T A A C G T A G T C A G T C C G T A
T G C A G T A C C G T A A T C G A C T G A C G T C T A G C G A T T C G A A G T C A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.66
Offset:5
Orientation:forward strand
Alignment:CCAGGTAATCCA-
-----TAATCCCN
A G T C A G T C C G T A A C T G A C T G A C G T C G T A C G T A A C G T A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G

OTX2/MA0712.2/Jaspar

Match Rank:8
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CCAGGTAATCCA--
--NNCTAATCCCNN
A G T C A G T C C G T A A C T G A C T G A C G T C G T A C G T A A C G T A G T C A G T C C G T A A C G T A C G T
A C G T A C G T G C A T G C A T G A T C G C A T C G T A G T C A C A G T G A T C G A T C G A T C G C A T C G A T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:9
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CCAGGTAATCCA-
---NYTAATCCYB
A G T C A G T C C G T A A C T G A C T G A C G T C G T A C G T A A C G T A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

PITX3/MA0714.1/Jaspar

Match Rank:10
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CCAGGTAATCCA
---CTTAATCCC
A G T C A G T C C G T A A C T G A C T G A C G T C G T A C G T A A C G T A G T C A G T C C G T A
A C G T A C G T A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C