Information for 8-GGAGTTTTGAGT (Motif 11)

A C T G A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T
Reverse Opposite:
C G T A A G T C A C G T A G T C C G T A C G T A C G T A C G T A A G T C A C G T A G T C A G T C
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets117.0 +/- 0.0bp
Average Position of motif in Background123.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX2-5/MA0063.2/Jaspar

Match Rank:1
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:GGAGTTTTGAGT---
----NNTTGAGTGNN
A C T G A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A G C T C G A T G C A T C T A G C G T A C T A G G A C T C T A G A C T G A G C T

NKX2-2/MA1645.1/Jaspar

Match Rank:2
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GGAGTTTTGAGT-----
---NNNTTGAGTGGNNN
A C T G A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C G A T A G T C A G C T C A G T T A C G C G T A C A T G C G A T C T A G A C T G G C A T C G A T C T G A

PB0134.1_Hnf4a_2/Jaspar

Match Rank:3
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----GGAGTTTTGAGT
NNATTGGACTTTNGNN-
A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C A C G T

MSANTD3/MA1523.1/Jaspar

Match Rank:4
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:GGAGTTTTGAGT----
------GTGAGTGNAC
A C T G A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G C A G T C T A G C G T A C T A G G C A T C T A G A C G T T G C A T A G C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:5
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:GGAGTTTTGAGT----
-----CTTGAGTGGCT
A C T G A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

LIN54/MA0619.1/Jaspar

Match Rank:6
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GGAGTTTTGAGT-
----ATTTGAATT
A C T G A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GGAGTTTTGAGT----
----NTTTCATTRCHD
A C T G A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T G C A T A C G T C G A T A G T C C G T A A C G T A C G T C T A G A G T C G A C T C A G T

BATF3/MA0835.2/Jaspar

Match Rank:8
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:GGAGTTTTGAGT----
-----NATGAGTCATN
A C T G A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T G C T A G C A T C A T G G C T A A T C G C G A T G T A C C G T A C A G T G C T A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:GGAGTTTTGAGT----
------TTGAGTGSTT
A C T G A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:10
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:GGAGTTTTGAGT---
-----CTYRAGTGSY
A C T G A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C