Information for 17-ATTAATAATC (Motif 28)

C G T A A C G T A C G T C G T A C G T A A C G T C G T A C G T A A C G T A G T C
Reverse Opposite:
A C T G C G T A A C G T A C G T C G T A A C G T A C G T C G T A C G T A A C G T
p-value:1e-3
log p-value:-6.936e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif44.0
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets51.0 +/- 0.0bp
Average Position of motif in Background94.0 +/- 70.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.76
Offset:0
Orientation:forward strand
Alignment:ATTAATAATC
ATGAATATTC
C G T A A C G T A C G T C G T A C G T A A C G T C G T A C G T A A C G T A G T C
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

Arid3b/MA0601.1/Jaspar

Match Rank:2
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---ATTAATAATC
NTAATTAATAT--
A C G T A C G T A C G T C G T A A C G T A C G T C G T A C G T A A C G T C G T A C G T A A C G T A G T C
A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T A C G T A C G T

PH0150.1_Pou4f3/Jaspar

Match Rank:3
Score:0.74
Offset:-6
Orientation:reverse strand
Alignment:------ATTAATAATC
GACNTCATTAATAANN
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T C G T A C G T A A C G T C G T A C G T A A C G T A G T C
C T A G C T G A T G A C G A T C C A G T G T A C C G T A C G A T C G A T C G T A C T G A C G A T C G T A G T C A A G T C C G A T

PH0018.1_Dbx1/Jaspar

Match Rank:4
Score:0.73
Offset:-6
Orientation:forward strand
Alignment:------ATTAATAATC-
TAATTAATTAATAATTA
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T C G T A C G T A A C G T C G T A C G T A A C G T A G T C A C G T
G A C T G C T A C T G A G C A T G C A T G C T A C G T A G C A T G C A T C G T A G C T A G C A T C G T A T C G A C G A T C G A T C T G A

POU4F3/MA0791.1/Jaspar

Match Rank:5
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---ATTAATAATC---
CTCATTAATTATGCAT
A C G T A C G T A C G T C G T A A C G T A C G T C G T A C G T A A C G T C G T A C G T A A C G T A G T C A C G T A C G T A C G T
A G T C C A G T G T A C C T G A G A C T G C A T G C T A G C T A G C A T G C A T G C T A C G A T C A T G G A T C T C G A G A C T

PH0120.1_Nkx6-3/Jaspar

Match Rank:6
Score:0.72
Offset:-7
Orientation:reverse strand
Alignment:-------ATTAATAATC
CNNANTAATTAATTNNC
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T C G T A C G T A A C G T C G T A C G T A A C G T A G T C
T G A C T C G A T G C A T C G A A C T G G A C T T G C A C G T A G A C T G A C T C T G A G C T A C G A T C G A T C G A T A C G T G A T C

PH0172.1_Tlx2/Jaspar

Match Rank:7
Score:0.72
Offset:-6
Orientation:forward strand
Alignment:------ATTAATAATC-
TAATTAATTAATAACTA
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T C G T A C G T A A C G T C G T A C G T A A C G T A G T C A C G T
A C G T G C T A C T G A C G A T G A C T C G T A C G T A G A C T G A C T C T G A C G T A G C A T C G T A C T G A G A T C C G A T C G A T

Lhx3/MA0135.1/Jaspar

Match Rank:8
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--ATTAATAATC-
AAATTAATTAATC
A C G T A C G T C G T A A C G T A C G T C G T A C G T A A C G T C G T A C G T A A C G T A G T C A C G T
C G T A T C G A C G T A A C G T A C G T C G T A C G T A G A C T A G C T G C T A C G T A G A C T A G T C

PH0119.1_Nkx6-1_2/Jaspar

Match Rank:9
Score:0.71
Offset:-6
Orientation:reverse strand
Alignment:------ATTAATAATC
GANGTAATTAATTANN
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T C G T A C G T A A C G T C G T A C G T A A C G T A G T C
T C A G C T G A T G C A T C A G G A C T T G C A C G T A C G A T G A C T C T G A G C T A C G A T C G A T C T G A A G T C A G C T

POU4F1/MA0790.1/Jaspar

Match Rank:10
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-ATTAATAATC---
CATTAATTATTCAT
A C G T C G T A A C G T A C G T C G T A C G T A A C G T C G T A C G T A A C G T A G T C A C G T A C G T A C G T
G T A C C T G A A G C T G C A T G C T A G C T A G C A T G C A T C G T A C G A T C A G T G A T C C T G A A G C T