Information for 2-CCGTAACATG (Motif 2)

A G T C A G T C A C T G A C G T C G T A C G T A A G T C C G T A A C G T A C T G
Reverse Opposite:
A G T C C G T A A C G T A C T G A C G T A C G T C G T A A G T C A C T G A C T G
p-value:1e-4
log p-value:-1.023e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets162.0 +/- 0.0bp
Average Position of motif in Background8.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:1
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CCGTAACATG----
--GWAAYHTGABMC
A G T C A G T C A C T G A C G T C G T A C G T A A G T C C G T A A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

SIX1/MA1118.1/Jaspar

Match Rank:2
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CCGTAACATG---
--GTAACCTGATA
A G T C A G T C A C T G A C G T C G T A C G T A A G T C C G T A A C G T A C T G A C G T A C G T A C G T
A C G T A C G T C A T G C G A T G C T A C G T A G A T C G T A C G C A T C T A G C G T A A C G T G T C A

USF2/MA0526.3/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CCGTAACATG----
NNGTCACATGACNN
A G T C A G T C A C T G A C G T C G T A C G T A A G T C C G T A A C G T A C T G A C G T A C G T A C G T A C G T
C G T A C T A G T C A G A G C T T A G C G T C A A G T C T C G A C A G T T A C G T C G A A G T C G A T C G T C A

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:4
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CCGTAACATG--
--GTCACATGAY
A G T C A G T C A C T G A C G T C G T A C G T A A G T C C G T A A C G T A C T G A C G T A C G T
A C G T A C G T T C A G G A C T G T A C G T C A A G T C T C G A G C A T A T C G T C G A A G T C

USF1/MA0093.3/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CCGTAACATG----
NNGTCACATGACNN
A G T C A G T C A C T G A C G T C G T A C G T A A G T C C G T A A C G T A C T G A C G T A C G T A C G T A C G T
C T G A C T A G T C A G A G C T T A G C G T C A A G T C T C G A C A G T A T C G T C G A A G T C G A T C G T C A

OVOL2/MA1545.1/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CCGTAACATG
GTACCGTTATGTG
A C G T A C G T A C G T A G T C A G T C A C T G A C G T C G T A C G T A A G T C C G T A A C G T A C T G
C T A G C G A T G C T A T A G C A T G C A C T G A G C T A C G T T C G A A G C T C A T G G A C T A T C G

SIX2/MA1119.1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CCGTAACATG----
AACTGAAACCTGATAC
A C G T A C G T A G T C A G T C A C T G A C G T C G T A C G T A A G T C C G T A A C G T A C T G A C G T A C G T A C G T A C G T
G C T A G C T A T G A C C G A T C A T G G C T A G T C A C T G A G A T C G T A C G C A T C T A G C G T A A C G T G T C A G A T C

MXI1/MA1108.2/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CCGTAACATG--
--GACACATGGC
A G T C A G T C A C T G A C G T C G T A C G T A A G T C C G T A A C G T A C T G A C G T A C G T
A C G T A C G T C T A G T C G A G A T C C T G A A G T C C T G A A G C T C T A G A C T G A T G C

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CCGTAACATG----
--GWAAYHTGAKMC
A G T C A G T C A C T G A C G T C G T A C G T A A G T C C G T A A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

PB0121.1_Foxj3_2/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CCGTAACATG---
AACACCAAAACAAAGGA
A C G T A C G T A C G T A C G T A G T C A G T C A C T G A C G T C G T A C G T A A G T C C G T A A C G T A C T G A C G T A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A