Information for 19-GGTAATGGCCAG (Motif 19)

A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A C T G A G T C A G T C C G T A A C G T A C G T C G T A A G T C A G T C
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets61.0 +/- 0.0bp
Average Position of motif in Background192.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GGTAATGGCCAG
GTTAATGGCC--
A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A A C T G
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T

HOXD8/MA0910.2/Jaspar

Match Rank:2
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GGTAATGGCCAG
-GTAATTGC---
A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A A C T G
A C G T A C T G A C G T G T C A C G T A A C G T A C G T C T A G A G T C A C G T A C G T A C G T

HOXB8/MA1502.1/Jaspar

Match Rank:3
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GGTAATGGCCAG
-NTAATTGC---
A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A A C T G
A C G T A C T G A C G T G T C A C G T A A C G T A C G T C T A G T G A C A C G T A C G T A C G T

HOXA7/MA1498.1/Jaspar

Match Rank:4
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GGTAATGGCCAG
-GTAATTGC---
A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A A C T G
A C G T A T C G A C G T G T C A C G T A C G A T A C G T T C A G T A G C A C G T A C G T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GGTAATGGCCAG
GKTAATGR----
A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A A C T G
A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T A C G T A C G T A C G T

Isl1/MA1608.1/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GGTAATGGCCAG
NNCTAATGGNN--
A C G T A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A A C T G
A C G T T C A G G A T C C G A T C T G A C G T A G A C T C A T G C T A G T G C A G A C T A C G T A C G T

HOXB6/MA1500.1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GGTAATGGCCAG
-TTAATTAC---
A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A A C T G
A C G T A G C T A G C T G T C A C G T A A C G T A C G T C T G A A G T C A C G T A C G T A C G T

HOXA6/MA1497.1/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GGTAATGGCCAG
NNTAATTACN--
A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A A C T G
T A C G G A C T G C A T G C T A C G T A A G C T C A G T T C G A T A G C T G A C A C G T A C G T

BARX1/MA0875.1/Jaspar

Match Rank:9
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GGTAATGGCCAG
-NTAATTGN---
A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A A C T G
A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GGTAATGGCCAG
AGGTCAAGGTCA-
A C G T A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A A C T G
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T