Information for 2-AACCATAGAAAC (Motif 2)

C G T A C G T A A G T C A G T C C G T A A C G T C G T A A C T G C G T A C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T A C G T A G T C A C G T C G T A A C G T A C T G A C T G A C G T A C G T
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets63.0 +/- 0.0bp
Average Position of motif in Background175.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RFX1/MA0509.2/Jaspar

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:AACCATAGAAAC--
TNCCATAGCAACNN
C G T A C G T A A G T C A G T C C G T A A C G T C G T A A C T G C G T A C G T A C G T A A G T C A C G T A C G T
G A C T C A T G A G T C G A T C G T C A G A C T T C G A C T A G G A T C C T G A T C G A G A T C G T C A T C A G

RFX3/MA0798.2/Jaspar

Match Rank:2
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:AACCATAGAAAC--
TNCCATAGCAACNN
C G T A C G T A A G T C A G T C C G T A A C G T C G T A A C T G C G T A C G T A C G T A A G T C A C G T A C G T
G A C T C A T G A G T C G A T C G T C A A G C T C T G A C T A G G A T C C T G A T C G A G A T C T G A C T C A G

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.72
Offset:0
Orientation:forward strand
Alignment:AACCATAGAAAC---
TACCATAGCAACGGT
C G T A C G T A A G T C A G T C C G T A A C G T C G T A A C T G C G T A C G T A C G T A A G T C A C G T A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0054.1_Rfx3_1/Jaspar

Match Rank:4
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----AACCATAGAAAC-------
TGTGACCCTTAGCAACCGATTAA
A C G T A C G T A C G T A C G T C G T A C G T A A G T C A G T C C G T A A C G T C G T A A C T G C G T A C G T A C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.69
Offset:2
Orientation:forward strand
Alignment:AACCATAGAAAC--
--SCCTAGCAACAG
C G T A C G T A A G T C A G T C C G T A A C G T C G T A A C T G C G T A C G T A C G T A A G T C A C G T A C G T
A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AACCATAGAAAC---
CCGCATAGCAACGGA
C G T A C G T A A G T C A G T C C G T A A C G T C G T A A C T G C G T A C G T A C G T A A G T C A C G T A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

RUNX1/MA0002.2/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AACCATAGAAAC
AAACCACAGAN--
A C G T C G T A C G T A A G T C A G T C C G T A A C G T C G T A A C T G C G T A C G T A C G T A A G T C
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T

RFX4/MA0799.1/Jaspar

Match Rank:8
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---AACCATAGAAAC-
CGTTGCCATGGCAACN
A C G T A C G T A C G T C G T A C G T A A G T C A G T C C G T A A C G T C G T A A C T G C G T A C G T A C G T A A G T C A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AACCATAGAAAC
AAACCACAGC---
A C G T C G T A C G T A A G T C A G T C C G T A A C G T C G T A A C T G C G T A C G T A C G T A A G T C
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AACCATAGAAAC-
TTGCCATGGCAACC
A C G T C G T A C G T A A G T C A G T C C G T A A C G T C G T A A C T G C G T A C G T A C G T A A G T C A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C