Information for 2-CTACTTAATTAG (Motif 4)

A G T C A C G T C G T A A G T C A C G T A C G T C G T A C G T A A C G T A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A C G T A A C G T A C G T C G T A C G T A A C T G A C G T C G T A A C T G
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets63.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0147.1_Pou3f2/Jaspar

Match Rank:1
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-CTACTTAATTAG----
GATAATTAATTAGTTTG
A C G T A G T C A C G T C G T A A G T C A C G T A C G T C G T A C G T A A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T
T A C G C G A T C G A T C G T A G C T A G A C T A G C T G C T A C G T A C G A T A C G T G C T A C T A G A C G T C A G T G A C T C T A G

PH0143.1_Pou2f1/Jaspar

Match Rank:2
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:CTACTTAATTAG-----
-TACTTAATTAATNNAN
A G T C A C G T C G T A A G T C A C G T A C G T C G T A C G T A A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T G C A T C G T A T G A C G A C T C G A T G T C A C G T A C G A T A C G T C G T A C G T A G A C T C G T A G A C T C T G A G A C T

mix-a/MA0621.1/Jaspar

Match Rank:3
Score:0.78
Offset:2
Orientation:forward strand
Alignment:CTACTTAATTAG-
--AATTAATTAGT
A G T C A C G T C G T A A G T C A C G T A C G T C G T A C G T A A C G T A C G T C G T A A C T G A C G T
A C G T A C G T C G T A C T G A G A C T A C G T C G T A C G T A A C G T A C G T C G T A C T A G A C G T

PH0160.1_Shox2/Jaspar

Match Rank:4
Score:0.77
Offset:0
Orientation:forward strand
Alignment:CTACTTAATTAG-----
CGCGTTAATTAATTGTG
A G T C A C G T C G T A A G T C A C G T A C G T C G T A C G T A A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
T A G C C A T G G T A C T A C G A G C T G A C T T C G A C G T A G A C T A G C T C T G A C T G A C A G T A G C T T C A G C A G T A T C G

LBX1/MA0618.1/Jaspar

Match Rank:5
Score:0.77
Offset:4
Orientation:forward strand
Alignment:CTACTTAATTAG
----TTAATTAG
A G T C A C G T C G T A A G T C A C G T A C G T C G T A C G T A A C G T A C G T C G T A A C T G
A C G T A C G T A C G T A C G T C G A T A G C T C G T A C G T A A G C T C G A T C T G A A T C G

PH0154.1_Prrx1/Jaspar

Match Rank:6
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-CTACTTAATTAG----
ANNAGTTAATTAGTTAN
A C G T A G T C A C G T C G T A A G T C A C G T A C G T C G T A C G T A A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T
T C G A A T C G G A C T G T C A T C A G A G C T G A C T C T G A C T G A A G C T A C G T C T G A C T A G A G C T C A G T T G C A A T G C

ARGFX/MA1463.1/Jaspar

Match Rank:7
Score:0.76
Offset:3
Orientation:reverse strand
Alignment:CTACTTAATTAG-
---TTTAATTAGN
A G T C A C G T C G T A A G T C A C G T A C G T C G T A C G T A A C G T A C G T C G T A A C T G A C G T
A C G T A C G T A C G T C A G T G A C T G A C T C T G A C G T A A C G T C A G T C T G A C T A G G T C A

LHX9/MA0701.2/Jaspar

Match Rank:8
Score:0.76
Offset:4
Orientation:reverse strand
Alignment:CTACTTAATTAG
----NTAATTAG
A G T C A C G T C G T A A G T C A C G T A C G T C G T A C G T A A C G T A C G T C G T A A C T G
A C G T A C G T A C G T A C G T A G C T A G C T G T C A C G T A A C G T C A G T C T G A T C A G

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:9
Score:0.75
Offset:2
Orientation:forward strand
Alignment:CTACTTAATTAG
--ADBTAATTAR
A G T C A C G T C G T A A G T C A C G T A C G T C G T A C G T A A C G T A C G T C G T A A C T G
A C G T A C G T C G T A C G T A A G C T G A C T T G C A G T C A A C G T A G C T C T G A T C A G

PRRX2/MA0075.3/Jaspar

Match Rank:10
Score:0.75
Offset:4
Orientation:reverse strand
Alignment:CTACTTAATTAG
----NTAATTAG
A G T C A C G T C G T A A G T C A C G T A C G T C G T A C G T A A C G T A C G T C G T A A C T G
A C G T A C G T A C G T A C G T G A C T A G C T C G T A C G T A A C G T A C G T T C G A T C A G