Information for 9-CCAGTGTTCTCA (Motif 9)

A G T C A G T C C G T A A C T G A C G T A C T G A C G T A C G T A G T C A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A C T G C G T A C G T A A G T C C G T A A G T C A C G T A C T G A C T G
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets154.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CCAGTGTTCTCA
NCCATTGTTC---
A C G T A G T C A G T C C G T A A C T G A C G T A C T G A C G T A C G T A G T C A C G T A G T C C G T A
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T A C G T

SOX8/MA0868.2/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CCAGTGTTCTCA
CCATTGTTCT--
A G T C A G T C C G T A A C T G A C G T A C T G A C G T A C G T A G T C A C G T A G T C C G T A
A T G C G A T C C G T A C A G T C G A T T C A G C G A T G A C T G A T C A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCAGTGTTCTCA
CCATTGTTYB--
A G T C A G T C C G T A A C T G A C G T A C T G A C G T A C G T A G T C A C G T A G T C C G T A
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCAGTGTTCTCA
CCATTGTTC---
A G T C A G T C C G T A A C T G A C G T A C T G A C G T A C G T A G T C A C G T A G T C C G T A
A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCAGTGTTCTCA
CCATTGTTTT--
A G T C A G T C C G T A A C T G A C G T A C T G A C G T A C G T A G T C A C G T A G T C C G T A
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T A C G T

PB0062.1_Sox12_1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCAGTGTTCTCA--
TAATTGTTCTAAAC
A G T C A G T C C G T A A C T G A C G T A C T G A C G T A C G T A G T C A C G T A G T C C G T A A C G T A C G T
G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C

PB0194.1_Zbtb12_2/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CCAGTGTTCTCA-----
--AGNGTTCTAATGANN
A G T C A G T C C G T A A C T G A C G T A C T G A C G T A C G T A G T C A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A T C A G T A G C C A T G C A G T C A G T G T A C A G C T G C T A G C T A A G C T T A C G C T G A A C G T C G T A

Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CCAGTGTTCTCA
CCATTGTTYYBB
A G T C A G T C C G T A A C T G A C G T A C T G A C G T A C G T A G T C A C G T A G T C C G T A
A T G C G A T C C G T A A C G T A C G T A C T G A C G T A G C T A G C T A G T C A T C G A C T G

PB0099.1_Zfp691_1/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CCAGTGTTCTCA--
CGAACAGTGCTCACTAT
A C G T A C G T A C G T A G T C A G T C C G T A A C T G A C G T A C T G A C G T A C G T A G T C A C G T A G T C C G T A A C G T A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

SOX13/MA1120.1/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCAGTGTTCTCA
NNCCATTGTNN---
A C G T A C G T A G T C A G T C C G T A A C T G A C G T A C T G A C G T A C G T A G T C A C G T A G T C C G T A
C G A T A C T G A G T C G A T C C G T A G A C T C G A T T C A G G A C T A G C T G A C T A C G T A C G T A C G T