Information for 4-TGACCCCACTCA (Motif 6)

A C G T A C T G C G T A A G T C A G T C A G T C A G T C C G T A A G T C A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A C T G A C G T A C T G A C T G A C T G A C T G A C G T A G T C C G T A
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets116.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0157.1_Rara_2/Jaspar

Match Rank:1
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----TGACCCCACTCA
NNCNTGACCCCGCTCT
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G T C A G T C C G T A A G T C A C G T A G T C C G T A
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

PB0057.1_Rxra_1/Jaspar

Match Rank:2
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----TGACCCCACTCA
TGTCGTGACCCCTTAAT
A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G T C A G T C C G T A A G T C A C G T A G T C C G T A
C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T

NKX2-2/MA1645.1/Jaspar

Match Rank:3
Score:0.72
Offset:2
Orientation:forward strand
Alignment:TGACCCCACTCA----
--TAACCACTCAAGAA
A C G T A C T G C G T A A G T C A G T C A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G A C T G C T A C G T A T G A C G A T C G C T A G T A C G C A T A T G C G T C A T C G A T C A G G C T A G C T A

PB0153.1_Nr2f2_2/Jaspar

Match Rank:4
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----TGACCCCACTCA
NNNNTGACCCGGCGCG
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G T C A G T C C G T A A G T C A C G T A G T C C G T A
C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G

PB0025.1_Glis2_1/Jaspar

Match Rank:5
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---TGACCCCACTCA-
TATCGACCCCCCACAG
A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C G T
G A C T G C T A G C A T T A G C A C T G T G C A A G T C A G T C G A T C G A T C G A T C G A T C T G C A A G T C C T G A C A T G

PB0118.1_Esrra_2/Jaspar

Match Rank:6
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----TGACCCCACTCA
NNNNTTGACCCCTNNNN
A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G T C A G T C C G T A A G T C A C G T A G T C C G T A
C A T G T A G C T A G C G A T C C G A T A G C T T C A G G C T A G T A C G A T C A G T C A G T C C G A T T G A C T A C G G T A C A T G C

PB0030.1_Hnf4a_1/Jaspar

Match Rank:7
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----TGACCCCACTCA
NNANTTGACCCCTNNNN
A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G T C A G T C C G T A A G T C A C G T A G T C C G T A
A C G T G T A C C G T A T C G A A C G T A C G T C T A G G T C A G T A C G T A C A G T C A G T C C A G T A C T G T C A G G T C A T A C G

NR2C1/MA1535.1/Jaspar

Match Rank:8
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TGACCCCACTCA
NTGACCTCN----
A C G T A C G T A C T G C G T A A G T C A G T C A G T C A G T C C G T A A G T C A C G T A G T C C G T A
C T A G A G C T A T C G G T C A A G T C G T A C A G C T G A T C C A T G A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TGACCCCACTCA
TGACCYCT----
A C G T A C T G C G T A A G T C A G T C A G T C A G T C C G T A A G T C A C G T A G T C C G T A
A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T A C G T

KLF4/MA0039.4/Jaspar

Match Rank:10
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TGACCCCACTCA-
-CGCCCCACCCCC
A C G T A C T G C G T A A G T C A G T C A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C G T
A C G T T A G C A T C G G A T C G A T C G T A C G T A C C T G A A T G C T A G C G A T C G T A C A T G C