Information for 5-TGTAATAAACTC (Motif 6)

A C G T A C T G A C G T C G T A C G T A A C G T C G T A C G T A C G T A A G T C A C G T A G T C
Reverse Opposite:
A C T G C G T A A C T G A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G T C C G T A
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets70.0 +/- 0.0bp
Average Position of motif in Background160.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:TGTAATAAACTC
-GTCATAAAAN-
A C G T A C T G A C G T C G T A C G T A A C G T C G T A C G T A C G T A A G T C A C G T A G T C
A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:2
Score:0.70
Offset:0
Orientation:forward strand
Alignment:TGTAATAAACTC
GGTAATAAAAA-
A C G T A C T G A C G T C G T A C G T A A C G T C G T A C G T A C G T A A G T C A C G T A G T C
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T

HOXD9/MA0913.2/Jaspar

Match Rank:3
Score:0.69
Offset:1
Orientation:forward strand
Alignment:TGTAATAAACTC
-GCAATAAAAC-
A C G T A C T G A C G T C G T A C G T A A C G T C G T A C G T A C G T A A G T C A C G T A G T C
A C G T T C A G A G T C G T C A T C G A C G A T G C T A C G T A C G T A G T C A G A T C A C G T

CDX2/MA0465.2/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TGTAATAAACTC
AAGCAATAAAAA-
A C G T A C G T A C T G A C G T C G T A C G T A A C G T C G T A C G T A C G T A A G T C A C G T A G T C
C T G A C G T A C T A G G A T C G T C A C T G A A G C T C G T A C G T A G C T A C G T A G C T A A C G T

PH0046.1_Hoxa10/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TGTAATAAACTC--
TAGGTAATAAAATTCA
A C G T A C G T A C G T A C T G A C G T C G T A C G T A A C G T C G T A C G T A C G T A A G T C A C G T A G T C A C G T A C G T
C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A

CDX4/MA1473.1/Jaspar

Match Rank:6
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TGTAATAAACTC
GGCAATAAAAC-
A C G T A C T G A C G T C G T A C G T A A C G T C G T A C G T A C G T A A G T C A C G T A G T C
C A T G T C A G A G T C T G C A C G T A A C G T C G T A C G T A G T C A G T C A A G T C A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:7
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---TGTAATAAACTC-
AAAGGTAATAAAATTT
A C G T A C G T A C G T A C G T A C T G A C G T C G T A C G T A A C G T C G T A C G T A C G T A A G T C A C G T A G T C A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

CDX1/MA0878.2/Jaspar

Match Rank:8
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TGTAATAAACTC
GGCCATAAAAC-
A C G T A C T G A C G T C G T A C G T A A C G T C G T A C G T A C G T A A G T C A C G T A G T C
C A T G C T A G A G T C T G A C C G T A A C G T C T G A C G T A C T G A G T C A A G T C A C G T

PH0012.1_Cdx1/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TGTAATAAACTC-
TAAGGTAATAAAATTA
A C G T A C G T A C G T A C G T A C T G A C G T C G T A C G T A A C G T C G T A C G T A C G T A A G T C A C G T A G T C A C G T
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

PH0075.1_Hoxd10/Jaspar

Match Rank:10
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TGTAATAAACTC---
AATGCAATAAAATTTAT
A C G T A C G T A C G T A C T G A C G T C G T A C G T A A C G T C G T A C G T A C G T A A G T C A C G T A G T C A C G T A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T