Information for 1-GATCGTGTCT (Motif 1)

A C T G C G T A A C G T A G T C A C T G A C G T A C T G A C G T A G T C A C G T
Reverse Opposite:
C G T A A C T G C G T A A G T C C G T A A G T C A C T G C G T A A C G T A G T C
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets25.0 +/- 0.0bp
Average Position of motif in Background67.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GATCGTGTCT-
NHGTCGTGAYDN
A C G T A C T G C G T A A C G T A G T C A C T G A C G T A C T G A C G T A G T C A C G T A C G T
C T A G G T C A C A T G A C G T A T G C T C A G C A G T A C T G G T C A A G T C C G A T A G T C

Mecom/MA0029.1/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GATCGTGTCT-
TNTTATCTTATCTT
A C G T A C G T A C G T A C T G C G T A A C G T A G T C A C T G A C G T A C T G A C G T A G T C A C G T A C G T
A C G T T A C G A G C T C G A T C T G A A C G T A G T C A G C T A C G T C T G A A C G T T A G C G C A T G A C T

GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:3
Score:0.61
Offset:-7
Orientation:forward strand
Alignment:-------GATCGTGTCT---
NNNNNBAGATAWYATCTVHN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C G T A G T C A C T G A C G T A C T G A C G T A G T C A C G T A C G T A C G T A C G T
C T G A C T G A C T A G T C G A C G T A A T G C C G T A A C T G C G T A A C G T C T G A C G A T A G C T C G T A A C G T A G T C C G A T T A C G G T C A G C A T

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GATCGTGTCT-------
NNTNNTGTCTGGNNTNG
A C T G C G T A A C G T A G T C A C T G A C G T A C T G A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

PH0044.1_Homez/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GATCGTGTCT---
AAAACATCGTTTTTAAG
A C G T A C G T A C G T A C G T A C T G C G T A A C G T A G T C A C T G A C G T A C T G A C G T A G T C A C G T A C G T A C G T A C G T
C G T A G C A T G C T A G C T A T G A C G C T A A C G T G T A C A C T G C G A T C G A T G C A T G A C T A G C T G C T A C T G A C T A G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GATCGTGTCT--
--VBSYGTCTGG
A C T G C G T A A C G T A G T C A C T G A C G T A C T G A C G T A G T C A C G T A C G T A C G T
A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

PB0125.1_Gata3_2/Jaspar

Match Rank:7
Score:0.60
Offset:-7
Orientation:forward strand
Alignment:-------GATCGTGTCT-----
TTTTGTAGATTTTATCGACTTA
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C G T A G T C A C T G A C G T A C T G A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G A C T A C G T G C A T C A G T T C A G A G C T G C T A C T A G G C T A G A C T C G A T A C G T G A C T C T G A A C G T G A T C C T A G T C G A A T G C C G A T G C A T G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GATCGTGTCT--
----CTGTCTGG
A C T G C G T A A C G T A G T C A C T G A C G T A C T G A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Smad4/MA1153.1/Jaspar

Match Rank:9
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GATCGTGTCT---
-----TGTCTAGA
A C T G C G T A A C G T A G T C A C T G A C G T A C T G A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GATCGTGTCT--
----TWGTCTGV
A C T G C G T A A C G T A G T C A C T G A C G T A C T G A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G