Information for 2-GCACGGAGGA (Motif 3)

A C T G A G T C C G T A A G T C A C T G A C T G C G T A A C T G A C T G C G T A
Reverse Opposite:
A C G T A G T C A G T C A C G T A G T C A G T C A C T G A C G T A C T G A G T C
p-value:1e-4
log p-value:-1.023e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets25.0 +/- 0.0bp
Average Position of motif in Background122.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF263/MA0528.2/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCACGGAGGA--
GGGGGGAGGAGG
A C T G A G T C C G T A A G T C A C T G A C T G C G T A A C T G A C T G C G T A A C G T A C G T
T C A G A T C G C T A G T A C G A T C G A C T G G T C A A C T G A T C G T G C A T A C G A T C G

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GCACGGAGGA---
---GGGAGGACNG
A C T G A G T C C G T A A G T C A C T G A C T G C G T A A C T G A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCACGGAGGA
BGCACGTA---
A C G T A C T G A G T C C G T A A G T C A C T G A C T G C G T A A C T G A C T G C G T A
A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GCACGGAGGA
TBGCACGCAA--
A C G T A C G T A C T G A G T C C G T A A G T C A C T G A C T G C G T A A C T G A C T G C G T A
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCACGGAGGA
GCACGTAY--
A C T G A G T C C G T A A G T C A C T G A C T G C G T A A C T G A C T G C G T A
C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T

HIF1A/MA1106.1/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GCACGGAGGA
NNGCACGTNC--
A C G T A C G T A C T G A G T C C G T A A G T C A C T G A C T G C G T A A C T G A C T G C G T A
T A C G T A C G C A T G A G T C T C G A A G T C C T A G G A C T T C G A A T G C A C G T A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCACGGAGGA
GCACGTACCC
A C T G A G T C C G T A A G T C A C T G A C T G C G T A A C T G A C T G C G T A
C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCACGGAGGA
GCACGTNC--
A C T G A G T C C G T A A G T C A C T G A C T G C G T A A C T G A C T G C G T A
A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:9
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GCACGGAGGA
---CGGAGC-
A C T G A G T C C G T A A G T C A C T G A C T G C G T A A C T G A C T G C G T A
A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GCACGGAGGA
-CACGCA---
A C T G A G T C C G T A A G T C A C T G A C T G C G T A A C T G A C T G C G T A
A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T