Information for 23-GTCTCATATAAA (Motif 22)

A C T G A C G T A G T C A C G T A G T C C G T A A C G T C G T A A C G T C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T C G T A A C G T C G T A A C G T A C T G C G T A A C T G C G T A A G T C
p-value:1e-4
log p-value:-1.122e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets88.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GTCTCATATAAA--
AAAGCTCGTAAAATTT
A C G T A C G T A C T G A C G T A G T C A C G T A G T C C G T A A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

HOXC13/MA0907.1/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GTCTCATATAAA
-GCTCGTAAAAA
A C T G A C G T A G T C A C G T A G T C C G T A A C G T C G T A A C G T C G T A C G T A C G T A
A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

POL012.1_TATA-Box/Jaspar

Match Rank:3
Score:0.62
Offset:5
Orientation:forward strand
Alignment:GTCTCATATAAA--------
-----GTATAAAAGGCGGGG
A C T G A C G T A G T C A C G T A G T C C G T A A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:4
Score:0.62
Offset:5
Orientation:forward strand
Alignment:GTCTCATATAAA--------
-----GTATAAAAGGCGGGG
A C T G A C G T A G T C A C G T A G T C C G T A A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

PH0048.1_Hoxa13/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GTCTCATATAAA--
AAACCTCGTAAAATTT
A C G T A C G T A C T G A C G T A G T C A C G T A G T C C G T A A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GTCTCATATAAA
-CCYMATAAAA-
A C T G A C G T A G T C A C G T A G T C C G T A A C G T C G T A A C G T C G T A C G T A C G T A
A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GTCTCATATAAA
-NCYAATAAAA-
A C T G A C G T A G T C A C G T A G T C C G T A A C G T C G T A A C G T C G T A C G T A C G T A
A C G T C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GTCTCATATAAA--
----CYHATAAAAN
A C T G A C G T A G T C A C G T A G T C C G T A A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C

PB0080.1_Tbp_1/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GTCTCATATAAA----
TCTTTATATATAAATA
A C T G A C G T A G T C A C G T A G T C C G T A A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A G C T A G T C G C A T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A G T C A C A G T T C G A

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:10
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GTCTCATATAAA---
---WWATRTAAACAN
A C T G A C G T A G T C A C G T A G T C C G T A A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T G C A T G C A T C T G A A C G T C T G A A C G T C G T A C G T A C G T A A G T C G T C A G T C A