Information for 1-GCAAGGCAGACA (Motif 1)

A C T G A G T C C G T A C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T A G T C A C G T A C T G A G T C A G T C A C G T A C G T A C T G A G T C
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets6.0 +/- 0.0bp
Average Position of motif in Background94.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:GCAAGGCAGACA---
-----CCAGACRSVB
A C T G A G T C C G T A C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:GCAAGGCAGACA-
-----CCAGACAG
A C T G A G T C C G T A C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:GCAAGGCAGACA-
-----BCAGACWA
A C T G A G T C C G T A C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCAAGGCAGACA-----
-CGAAGCACACAAAATA
A C T G A G T C C G T A C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GCAAGGCAGACA
--ATGCCAGACN
A C T G A G T C C G T A C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A
A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCAAGGCAGACA-----
CAAATCCAGACATCACA
A C T G A G T C C G T A C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:7
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GCAAGGCAGACA--
NNNVCTGWGYAAACASN
A C G T A C G T A C G T A C T G A G T C C G T A C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C G T A C G T
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A

PB0130.1_Gm397_2/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCAAGGCAGACA-----
-AGCGGCACACACGCAA
A C T G A G T C C G T A C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GCAAGGCAGACA
GCTAARTAAACA
A C T G A G T C C G T A C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A
A T C G G A T C G C A T T C G A G C T A T C G A G C A T G T C A C G T A G T C A G A T C G C T A

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GCAAGGCAGACA--
TGCCAAAATAAACANN
A C G T A C G T A C T G A G T C C G T A C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A