| p-value: | 1e-3 |
| log p-value: | -8.084e+00 |
| Information Content per bp: | 1.530 |
| Number of Target Sequences with motif | 1.0 |
| Percentage of Target Sequences with motif | 50.00% |
| Number of Background Sequences with motif | 14.5 |
| Percentage of Background Sequences with motif | 0.02% |
| Average Position of motif in Targets | 60.0 +/- 0.0bp |
| Average Position of motif in Background | 122.7 +/- 66.4bp |
| Strand Bias (log2 ratio + to - strand density) | 10.0 |
| Multiplicity (# of sites on avg that occur together) | 1.00 |
| Motif File: | file (matrix) reverse opposite |
| SVG Files for Logos: | forward logo reverse opposite |
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer
| Match Rank: | 1 |
| Score: | 0.79 |
| Offset: | 0 |
| Orientation: | reverse strand |
| Alignment: | GGTAATGGCC GTTAATGGCC |
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HOXD8/MA0910.2/Jaspar
| Match Rank: | 2 |
| Score: | 0.78 |
| Offset: | 1 |
| Orientation: | reverse strand |
| Alignment: | GGTAATGGCC -GTAATTGC- |
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HOXB8/MA1502.1/Jaspar
| Match Rank: | 3 |
| Score: | 0.76 |
| Offset: | 1 |
| Orientation: | reverse strand |
| Alignment: | GGTAATGGCC -NTAATTGC- |
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HOXA7/MA1498.1/Jaspar
| Match Rank: | 4 |
| Score: | 0.75 |
| Offset: | 1 |
| Orientation: | reverse strand |
| Alignment: | GGTAATGGCC -GTAATTGC- |
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|
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer
| Match Rank: | 5 |
| Score: | 0.73 |
| Offset: | 0 |
| Orientation: | forward strand |
| Alignment: | GGTAATGGCC GKTAATGR-- |
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Isl1/MA1608.1/Jaspar
| Match Rank: | 6 |
| Score: | 0.73 |
| Offset: | -1 |
| Orientation: | reverse strand |
| Alignment: | -GGTAATGGCC NNCTAATGGNN |
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HOXB6/MA1500.1/Jaspar
| Match Rank: | 7 |
| Score: | 0.71 |
| Offset: | 1 |
| Orientation: | forward strand |
| Alignment: | GGTAATGGCC -TTAATTAC- |
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HOXA6/MA1497.1/Jaspar
| Match Rank: | 8 |
| Score: | 0.70 |
| Offset: | 0 |
| Orientation: | reverse strand |
| Alignment: | GGTAATGGCC NNTAATTACN |
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BARX1/MA0875.1/Jaspar
| Match Rank: | 9 |
| Score: | 0.69 |
| Offset: | 1 |
| Orientation: | reverse strand |
| Alignment: | GGTAATGGCC -NTAATTGN- |
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RARB(var.3)/MA1552.1/Jaspar
| Match Rank: | 10 |
| Score: | 0.68 |
| Offset: | -2 |
| Orientation: | reverse strand |
| Alignment: | --GGTAATGGCC-- AAGGTCATGACCTT |
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