Information for 20-AGAGATTAAGTT (Motif 20)

C G T A A C T G C G T A A C T G C G T A A C G T A C G T C G T A C G T A A C T G A C G T A C G T
Reverse Opposite:
C G T A C G T A A G T C A C G T A C G T C G T A C G T A A C G T A G T C A C G T A G T C A C G T
p-value:1e-4
log p-value:-9.679e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets20.0 +/- 0.0bp
Average Position of motif in Background6.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0124.1_Obox5_1/Jaspar

Match Rank:1
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---AGAGATTAAGTT--
TAGAGGGATTAAATTTC
A C G T A C G T A C G T C G T A A C T G C G T A A C T G C G T A A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T
G C A T C T G A T C A G T C G A T C A G C T A G C A T G C G T A A C G T C G A T C G T A C G T A G C T A G A C T A G C T G C A T G T A C

PH0125.1_Obox5_2/Jaspar

Match Rank:2
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---AGAGATTAAGTT--
NANAGGGATTAATTATN
A C G T A C G T A C G T C G T A A C T G C G T A A C T G C G T A A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T
T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C

PH0130.1_Otx2/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---AGAGATTAAGTT--
TGTAGGGATTAATTGTC
A C G T A C G T A C G T C G T A A C T G C G T A A C T G C G T A A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

PH0129.1_Otx1/Jaspar

Match Rank:4
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---AGAGATTAAGTT--
AGAGGGGATTAATTTAT
A C G T A C G T A C G T C G T A A C T G C G T A A C T G C G T A A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

DUX4/MA0468.1/Jaspar

Match Rank:5
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:AGAGATTAAGTT-
--TGATTAAATTA
C G T A A C T G C G T A A C T G C G T A A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T C G A T C T A G C G T A A C G T C A G T T C G A T C G A C T G A A C G T A G C T C G T A

DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer

Match Rank:6
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:AGAGATTAAGTT---
NWTGATTRGRTTAWN
C G T A A C T G C G T A A C T G C G T A A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
C G T A G C A T C G A T C T A G C G T A A C G T A C G T C T G A T C A G C T A G A C G T A C G T G C T A C G T A G T A C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AGAGATTAAGTT
VRGGATTARN--
C G T A A C T G C G T A A C T G C G T A A C G T A C G T C G T A C G T A A C T G A C G T A C G T
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T A C G T

DUXA/MA0884.1/Jaspar

Match Rank:8
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AGAGATTAAGTT--
-NTGATTAAATTAN
C G T A A C T G C G T A A C T G C G T A A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T G A C T G C A T T C A G T G C A A G C T A C G T T C G A T C G A C T G A A G C T G A C T C T G A C T A G

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:9
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AGAGATTAAGTT
-RGGATTAR---
C G T A A C T G C G T A A C T G C G T A A C G T A C G T C G T A C G T A A C T G A C G T A C G T
A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T A C G T

PH0138.1_Pitx2/Jaspar

Match Rank:10
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AGAGATTAAGTT--
TGAAGGGATTAATCATC
A C G T A C G T A C G T C G T A A C T G C G T A A C T G C G T A A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C