Information for 20-CACACAATGTCA (Motif 20)

A G T C C G T A A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A G T C C G T A A C G T A C G T A C T G A C G T A C T G A C G T A C T G
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets166.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0168.1_Sox14_2/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CACACAATGTCA-
CTCACACAATGGCGC
A C G T A C G T A G T C C G T A A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C G T A G T C C G T A A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

SOX13/MA1120.1/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CACACAATGTCA
-AAACAATGGCA
A G T C C G T A A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C G T A G T C C G T A
A C G T C T G A T C G A C T G A A G T C G C T A C T G A G C A T C T A G T C A G T G A C G C T A

ZSCAN4/MA1155.1/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CACACAATGTCA-
TGCACACACTGAAAA
A C G T A C G T A G T C C G T A A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C G T A G T C C G T A A C G T
G A C T T C A G A T G C C G T A A G T C C G T A G A T C T G C A G T A C A C G T A C T G C G T A G T C A C T G A C T G A

Sox17/MA0078.1/Jaspar

Match Rank:4
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CACACAATGTCA
--GACAATGNN-
A G T C C G T A A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C G T A G T C C G T A
A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T

SOX2/MA0143.4/Jaspar

Match Rank:5
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CACACAATGTCA
-AAACAATGGAA
A G T C C G T A A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C G T A G T C C G T A
A C G T C G T A C G T A G C T A G A T C G C T A T C G A C G A T C T A G C T A G C G T A G C T A

PB0208.1_Zscan4_2/Jaspar

Match Rank:6
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CACACAATGTCA
CGAAGCACACAAAATA-
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C G T A G T C C G T A
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:7
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----CACACAATGTCA
ATTTGCATACAATGG--
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C G T A G T C C G T A
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G A C G T A C G T

ESRRA/MA0592.3/Jaspar

Match Rank:8
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CACACAATGTCA--
-GCTCAAGGTCACA
A G T C C G T A A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C G T A G T C C G T A A C G T A C G T
A C G T C A T G A G T C G A C T T A G C C T G A T C G A C A T G C A T G C G A T A G T C C T G A G A T C T C G A

PB0014.1_Esrra_1/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CACACAATGTCA-----
TATTCAAGGTCATGCGA
A G T C C G T A A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A

Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CACACAATGTCA
BMRVACAAWGGV-
A C G T A G T C C G T A A G T C C G T A A G T C C G T A C G T A A C G T A C T G A C G T A G T C C G T A
A T G C T G A C C T G A T A C G C G T A A G T C C G T A C G T A C G T A C T A G T C A G T G C A A C G T