Information for 2-GTGGCAAGGC (Motif 2)

A C T G A C G T A C T G A C T G A G T C C G T A C G T A A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C A C G T A C G T A C T G A G T C A G T C C G T A A G T C
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets97.0 +/- 0.0bp
Average Position of motif in Background94.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GTGGCAAGGC
TTGCCAAG--
A C T G A C G T A C T G A C T G A G T C C G T A C G T A A C T G A C T G A G T C
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T

NFIC/MA0161.2/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GTGGCAAGGC
NNTGCCAAGNN
A C G T A C T G A C G T A C T G A C T G A G T C C G T A C G T A A C T G A C T G A G T C
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:3
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GTGGCAAGGC
VGCTGGCA----
A C G T A C G T A C T G A C G T A C T G A C T G A G T C C G T A C G T A A C T G A C T G A G T C
T A G C T A C G A T G C C A G T T C A G T A C G G A T C C T G A A C G T A C G T A C G T A C G T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GTGGCAAGGC
NATGTTGCAA---
A C G T A C G T A C G T A C T G A C G T A C T G A C T G A G T C C G T A C G T A A C T G A C T G A G T C
C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A A C G T A C G T A C G T

RBPJ/MA1116.1/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GTGGCAAGGC
CCTGGGAAAG-
A C G T A C T G A C G T A C T G A C T G A G T C C G T A C G T A A C T G A C T G A G T C
A G T C T A G C A G C T T C A G A C T G A C T G C G T A G T C A T G C A T A C G A C G T

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GTGGCAAGGC
GGTGCCAAGT-
A C G T A C T G A C G T A C T G A C T G A G T C C G T A C G T A A C T G A C T G A G T C
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GTGGCAAGGC
CTGTTGCTAGGS
A C G T A C G T A C T G A C G T A C T G A C T G A G T C C G T A C G T A A C T G A C T G A G T C
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

RFX7/MA1554.1/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GTGGCAAGGC
NTAGCAACG-
A C T G A C G T A C T G A C T G A G T C C G T A C G T A A C T G A C T G A G T C
C T G A G A C T T C G A T A C G G A T C C T G A C T G A A T G C T A C G A C G T

NR5A1/MA1540.1/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GTGGCAAGGC---
--GTCAAGGTCAC
A C T G A C G T A C T G A C T G A G T C C G T A C G T A A C T G A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C T G G A C T A T G C C T G A C G T A A C T G A C T G G A C T A G T C C T G A G A T C

ZFP57/MA1583.1/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GTGGCAAGGC
NNTGCGGCAANNN
A C G T A C G T A C G T A C T G A C G T A C T G A C T G A G T C C G T A C G T A A C T G A C T G A G T C
T C G A A T G C A G C T T A C G G A T C A T C G C T A G A T G C T G C A T G C A A G C T T A C G T A G C