Information for 8-AAGAATAAAACG (Motif 8)

C G T A C G T A A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C T G
Reverse Opposite:
A G T C A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C G T A G T C A C G T A C G T
p-value:1e-4
log p-value:-1.122e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets131.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA13/MA0650.2/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AAGAATAAAACG
CCCAATAAAAC-
C G T A C G T A A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C T G
T G A C T A G C A G T C G T C A C G T A A C G T C T G A C T G A C G T A G T C A G T A C A C G T

HOXB13/MA0901.2/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AAGAATAAAACG-
AACCAATAAAATTT
A C G T C G T A C G T A A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C T G A C G T
C G T A C G T A G T A C G A T C G C T A C G T A A C G T C G T A G C T A G C T A G C T A G C A T G C A T G C A T

PH0078.1_Hoxd13/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AAGAATAAAACG--
CTACCAATAAAATTCT
A C G T A C G T C G T A C G T A A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C T G A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AAGAATAAAACG
-GTCATAAAAN-
C G T A C G T A A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C T G
A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AAGAATAAAACG
GGTAATAAAAA-
C G T A C G T A A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C T G
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T

HOXD13/MA0909.2/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AAGAATAAAACG
CCCAATAAAAC-
C G T A C G T A A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C T G
T A G C T A G C A G T C G T C A C T G A C G A T C G T A C T G A G T C A T G C A T G A C A C G T

HOXD9/MA0913.2/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AAGAATAAAACG
-GCAATAAAAC-
C G T A C G T A A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C T G
A C G T T C A G A G T C G T C A T C G A C G A T G C T A C G T A C G T A G T C A G A T C A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AAGAATAAAACG---
AATGCAATAAAATTTAT
A C G T A C G T C G T A C G T A A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C T G A C G T A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

CDX2/MA0465.2/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AAGAATAAAACG
AAGCAATAAAAA-
A C G T C G T A C G T A A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C T G
C T G A C G T A C T A G G A T C G T C A C T G A A G C T C G T A C G T A G C T A C G T A G C T A A C G T

CDX4/MA1473.1/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AAGAATAAAACG
GGCAATAAAAC-
C G T A C G T A A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C T G
C A T G T C A G A G T C T G C A C G T A A C G T C G T A C G T A G T C A G T C A A G T C A C G T