Information for 10-GATTATGCATTA (Motif 11)

A C T G C G T A A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C G T C G T A
Reverse Opposite:
A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C G T A C G T A A C G T A G T C
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets177.0 +/- 0.0bp
Average Position of motif in Background69.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:GATTATGCATTA
GAATATTCAT--
A C T G C G T A A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C G T C G T A
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GATTATGCATTA
GHATATKCAT--
A C T G C G T A A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C G T C G T A
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:3
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--GATTATGCATTA---
TNNATTATGCATANNTT
A C G T A C G T A C T G C G T A A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C G T C G T A A C G T A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

NFIL3/MA0025.2/Jaspar

Match Rank:4
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GATTATGCATTA-
TATTATGCAATAT
A C T G C G T A A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C G T C G T A A C G T
C G A T T C G A G C A T C A G T C T G A G A C T C T A G G A T C G T C A C G T A A G C T G T C A G C A T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:5
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--GATTATGCATTA
TGAATTATGCAT--
A C G T A C G T A C T G C G T A A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C G T C G T A
C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T A C G T A C G T

HLF/MA0043.3/Jaspar

Match Rank:6
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GATTATGCATTA-
TTGTTATGCAACAA
A C G T A C T G C G T A A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C G T C G T A A C G T
C G A T C A G T T C A G G C A T C A G T C T G A A G C T C T A G G A T C G T C A C T G A A G T C G T C A C G T A

CEBPG(var.2)/MA1636.1/Jaspar

Match Rank:7
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GATTATGCATTA--
AAATGATGCAATCAT
A C G T A C T G C G T A A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C G T C G T A A C G T A C G T
C G T A C G T A T C G A C G A T C A T G C T G A G A C T C T A G G T A C G T C A C G T A A G C T G T A C G C T A G A C T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GATTATGCATTA-
ATGAATATTCATGAG
A C G T A C G T A C T G C G T A A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C G T C G T A A C G T
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

CEBPA/MA0102.4/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GATTATGCATTA-
NNATTGTGCAATNN
A C G T A C T G C G T A A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C G T C G T A A C G T
C G T A C G A T T C G A G C A T C A G T C T A G G A C T C T A G G T A C G T C A C G T A A G C T G T C A G C T A

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:10
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----GATTATGCATTA
WYATGCATWATGCAT--
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C G T C G T A
C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T A C G T A C G T