Information for 1-CCCATGGATAGG (Motif 1)

A G T C A G T C A G T C C G T A A C G T A C T G A C T G C G T A A C G T C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T C G T A A C G T A G T C A G T C C G T A A C G T A C T G A C T G A C T G
p-value:1e-5
log p-value:-1.227e+01
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif40.00%
Number of Background Sequences with motif252.9
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets56.0 +/- 3.0bp
Average Position of motif in Background105.9 +/- 158.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0159.1_Rfx4_2/Jaspar

Match Rank:1
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCCATGGATAGG--
TACCCTAGTTACCGA
A C G T A G T C A G T C A G T C C G T A A C G T A C T G A C T G C G T A A C G T C G T A A C T G A C T G A C G T A C G T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CCCATGGATAGG-
---ATGMATATDC
A G T C A G T C A G T C C G T A A C G T A C T G A C T G C G T A A C G T C G T A A C T G A C T G A C G T
A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CCCATGGATAGG----
CTACTTGGATACGGAAT
A C G T A G T C A G T C A G T C C G T A A C G T A C T G A C T G C G T A A C G T C G T A A C T G A C T G A C G T A C G T A C G T A C G T
A T G C A C G T T C G A A T G C C A G T G A C T T C A G A C T G C G T A A C G T C G T A G A T C T A C G T A C G C G T A C G T A G C A T

PB0158.1_Rfx3_2/Jaspar

Match Rank:4
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CCCATGGATAGG------
ACTGACCCTTGGTTACCACAAAG
A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G T C C G T A A C G T A C T G A C T G C G T A A C G T C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G T C A C G T A T C G G C T A A T G C T A C G A T G C G C A T C G A T T C A G A C T G C G A T C A G T C G T A G A T C T G A C T C G A T G A C T C G A T C G A C G T A A T C G

MF0008.1_MADS_class/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CCCATGGATAGG
-CCATATATGG-
A G T C A G T C A G T C C G T A A C G T A C T G A C T G C G T A A C G T C G T A A C T G A C T G
A C G T G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G A C G T

CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer

Match Rank:6
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CCCATGGATAGG
NTNATCGATA--
A G T C A G T C A G T C C G T A A C G T A C T G A C T G C G T A A C G T C G T A A C T G A C T G
G C A T A G C T C A G T T C G A A G C T G A T C C T A G T C G A A C G T T G C A A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CCCATGGATAGG-
---ATGAATATTC
A G T C A G T C A G T C C G T A A C G T A C T G A C T G C G T A A C G T C G T A A C T G A C T G A C G T
A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

REST/MA0138.2/Jaspar

Match Rank:8
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------CCCATGGATAGG---
TTCAGCACCATGGACAGCGCC
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G T C C G T A A C G T A C T G A C T G C G T A A C G T C G T A A C T G A C T G A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

MXI1/MA1108.2/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CCCATGGATAGG
GACACATGGC----
A C G T A C G T A G T C A G T C A G T C C G T A A C G T A C T G A C T G C G T A A C G T C G T A A C T G A C T G
C T A G T C G A G A T C C T G A A G T C C T G A A G C T C T A G A C T G A T G C A C G T A C G T A C G T A C G T

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:10
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----CCCATGGATAGG---
TCAGCACCATGGACAGCTCC
A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G T C C G T A A C G T A C T G A C T G C G T A A C G T C G T A A C T G A C T G A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C