Information for 13-CATTAAGTTT (Motif 19)

A G T C C G T A A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T
Reverse Opposite:
C G T A C G T A C G T A A G T C A C G T A C G T C G T A C G T A A C G T A C T G
p-value:1e-3
log p-value:-7.209e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif69.1
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets104.0 +/- 0.0bp
Average Position of motif in Background94.9 +/- 67.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX6-3/MA1530.1/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CATTAAGTTT
CTCATTAAA---
A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T
T A G C A G C T A G T C C G T A A C G T A G C T C T G A G C T A G C T A A C G T A C G T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CATTAAGTTT
YCATTAMC---
A C G T A G T C C G T A A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T
A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C A C G T A C G T A C G T

PH0073.1_Hoxc9/Jaspar

Match Rank:3
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------CATTAAGTTT
GGAGGTCATTAATTAT
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

NKX6-2/MA0675.1/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CATTAAGTTT
CTAATTAA----
A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T
A T G C G A C T G T C A G C T A C G A T G C A T C T G A G C T A A C G T A C G T A C G T A C G T

HOXC4/MA1504.1/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CATTAAGTTT
GTCATTAA----
A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T
T C A G G A C T G T A C C T G A A C G T A C G T C T G A T C G A A C G T A C G T A C G T A C G T

NKX6-1/MA0674.1/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CATTAAGTTT
GTAATTAA----
A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T
T A C G A G C T G T C A G T C A A C G T G C A T T C G A G C T A A C G T A C G T A C G T A C G T

HOXB4/MA1499.1/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CATTAAGTTT
ATCATTAG----
A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T
T C G A A G C T G T A C C T G A A C G T A C G T C T G A T C A G A C G T A C G T A C G T A C G T

HOXD4/MA1507.1/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CATTAAGTTT
ATCATTAG----
A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T
T C G A A G C T G T A C C T G A A C G T A C G T C T G A C T A G A C G T A C G T A C G T A C G T

PH0088.1_Isl2/Jaspar

Match Rank:9
Score:0.64
Offset:-7
Orientation:forward strand
Alignment:-------CATTAAGTTT
CAAAATCAATTAATTT-
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T
G T A C G C T A G T C A G T C A G T C A A G C T G A T C G T C A G T C A G A C T G A C T C G T A C T G A C A G T C G A T G A C T A C G T

Arid3b/MA0601.1/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CATTAAGTTT
NTAATTAATAT-
A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T A C G T