Information for 25-CTTCTCATAAAA (Motif 24)

A G T C A C G T A C G T A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C T G C G T A C G T A A C T G
p-value:1e-3
log p-value:-7.876e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif12.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets34.0 +/- 0.0bp
Average Position of motif in Background102.4 +/- 69.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-CTTCTCATAAAA---
AAAGCTCGTAAAATTT
A C G T A G T C A C G T A C G T A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A C G T A A C G T A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

HOXC13/MA0907.1/Jaspar

Match Rank:2
Score:0.76
Offset:2
Orientation:forward strand
Alignment:CTTCTCATAAAA-
--GCTCGTAAAAA
A G T C A C G T A C G T A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A C G T A A C G T
A C G T A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.75
Offset:2
Orientation:forward strand
Alignment:CTTCTCATAAAA
--NCYAATAAAA
A G T C A C G T A C G T A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A C G T A
A C G T A C G T C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:4
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:CTTCTCATAAAA
--CCYMATAAAA
A G T C A C G T A C G T A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A C G T A
A C G T A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

PH0048.1_Hoxa13/Jaspar

Match Rank:5
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CTTCTCATAAAA---
AAACCTCGTAAAATTT
A C G T A G T C A C G T A C G T A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A C G T A A C G T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.73
Offset:3
Orientation:forward strand
Alignment:CTTCTCATAAAA-
---CYHATAAAAN
A G T C A C G T A C G T A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A C G T A A C G T
A C G T A C G T A C G T T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C

HOXC10/MA0905.1/Jaspar

Match Rank:7
Score:0.72
Offset:3
Orientation:forward strand
Alignment:CTTCTCATAAAA-
---GTCGTAAAAT
A G T C A C G T A C G T A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A C G T A A C G T
A C G T A C G T A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

PH0078.1_Hoxd13/Jaspar

Match Rank:8
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CTTCTCATAAAA----
CTACCAATAAAATTCT
A G T C A C G T A C G T A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:9
Score:0.69
Offset:3
Orientation:forward strand
Alignment:CTTCTCATAAAA-
---GTCATAAAAN
A G T C A C G T A C G T A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A C G T A A C G T
A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

HOXB9/MA1503.1/Jaspar

Match Rank:10
Score:0.68
Offset:3
Orientation:forward strand
Alignment:CTTCTCATAAAA-
---GTCGTAAAAT
A G T C A C G T A C G T A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A C G T A A C G T
A C G T A C G T A C G T T C A G A G C T A G T C T C A G A C G T G C T A C G T A G T C A G C T A G A C T