Information for 24-CCAACAAAGG (Motif 34)

A G T C A G T C C G T A C G T A A G T C C G T A C G T A C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T A C G T A C G T A C T G A C G T A C G T A C T G A C T G
p-value:1e-2
log p-value:-6.861e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif30.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets69.0 +/- 0.0bp
Average Position of motif in Background110.0 +/- 64.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX4/MA0867.2/Jaspar

Match Rank:1
Score:0.80
Offset:1
Orientation:forward strand
Alignment:CCAACAAAGG-
-GAACAAAGGG
A G T C A G T C C G T A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T
A C G T C T A G T C G A C G T A A T G C T C G A T C G A G C T A C T A G T C A G T C A G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.80
Offset:2
Orientation:reverse strand
Alignment:CCAACAAAGG
--RACAAWGG
A G T C A G T C C G T A C G T A A G T C C G T A C G T A C G T A A C T G A C T G
A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

SOX10/MA0442.2/Jaspar

Match Rank:3
Score:0.79
Offset:0
Orientation:forward strand
Alignment:CCAACAAAGG-
AAAACAAAGAA
A G T C A G T C C G T A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T
C T G A C T G A T G C A G C T A A G T C C G T A G C T A G C T A A C T G T C G A T G C A

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:4
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:CCAACAAAGG
VRRACAAWGG
A G T C A G T C C G T A C G T A A G T C C G T A C G T A C G T A A C T G A C T G
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

PB0071.1_Sox4_1/Jaspar

Match Rank:5
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---CCAACAAAGG----
AGAAGAACAAAGGACTA
A C G T A C G T A C G T A G T C A G T C C G T A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:CCAACAAAGG
AAAACAAAGG
A G T C A G T C C G T A C G T A A G T C C G T A C G T A C G T A A C T G A C T G
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:CCAACAAAGG
GGAACAAAGR
A G T C A G T C C G T A C G T A A G T C C G T A C G T A C G T A A C T G A C T G
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

PB0061.1_Sox11_1/Jaspar

Match Rank:8
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---CCAACAAAGG----
ATAAGAACAAAGGACTA
A C G T A C G T A C G T A G T C A G T C C G T A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:CCAACAAAGG-
-GAACAATGGN
A G T C A G T C C G T A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T
A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer

Match Rank:10
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-CCAACAAAGG-
BMRVACAAWGGV
A C G T A G T C A G T C C G T A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T
A T G C T G A C C T G A T A C G C G T A A G T C C G T A C G T A C G T A C T A G T C A G T G C A