Information for 2-GTAGATTGCC (Motif 2)

A C T G A C G T C G T A A C T G C G T A A C G T A C G T A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C C G T A C G T A A C G T A G T C A C G T C G T A A G T C
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GTAGATTGCC
NNTGTGGATTSS-
A C G T A C G T A C G T A C T G A C G T C G T A A C T G C G T A A C G T A C G T A C T G A G T C A G T C
C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G A C G T

FOXH1/MA0479.1/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GTAGATTGCC
TGTGGATTNNN
A C G T A C T G A C G T C G T A A C T G C G T A A C G T A C G T A C T G A G T C A G T C
C G A T A C T G A C G T A C T G C A T G C G T A G C A T A C G T A T C G T C A G T C G A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GTAGATTGCC
GTTAATGGCC
A C T G A C G T C G T A A C T G C G T A A C G T A C G T A C T G A G T C A G T C
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

Dux/MA0611.1/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GTAGATTGCC
-TTGATTGN-
A C T G A C G T C G T A A C T G C G T A A C G T A C G T A C T G A G T C A G T C
A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G A C G T

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GTAGATTGCC
TTTNATTGCY
A C T G A C G T C G T A A C T G C G T A A C G T A C G T A C T G A G T C A G T C
A C G T A C G T C G A T A C G T G T C A A C G T C A G T C T A G A T G C G A T C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GTAGATTGCC
GGAAATTCCC
A C T G A C G T C G T A A C T G C G T A A C G T A C G T A C T G A G T C A G T C
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

PH0026.1_Duxbl/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GTAGATTGCC---
NNNNGTTGATTGGGTCG
A C G T A C G T A C G T A C G T A C T G A C G T C G T A A C T G C G T A A C G T A C G T A C T G A G T C A G T C A C G T A C G T A C G T
A T G C C G T A A G T C A G T C T C A G G A C T C G A T C T A G C T G A A C G T A C G T C T A G T C A G T C A G G A C T G A T C T C A G

CDX2/MA0465.2/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GTAGATTGCC-
NTTTTATTGCNN
A C G T A C T G A C G T C G T A A C T G C G T A A C G T A C G T A C T G A G T C A G T C A C G T
C G A T G C A T C G A T G C A T G C A T T C G A G A C T C A G T C T A G G A T C G C A T G A C T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GTAGATTGCC---
-BTGABTGACAGS
A C T G A C G T C G T A A C T G C G T A A C G T A C G T A C T G A G T C A G T C A C G T A C G T A C G T
A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

RELB/MA1117.1/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GTAGATTGCC---
--GAATTCCCCGG
A C T G A C G T C G T A A C T G C G T A A C G T A C G T A C T G A G T C A G T C A C G T A C G T A C G T
A C G T A C G T C T A G C T G A C G T A C G A T G A C T G A T C G T A C G T A C T A G C C A T G T A C G