Information for 3-GAGGATATGTTT (Motif 3)

A C T G C G T A A C T G A C T G C G T A A C G T C G T A A C G T A C T G A C G T A C G T A C G T
Reverse Opposite:
C G T A C G T A C G T A A G T C C G T A A C G T C G T A A C G T A G T C A G T C A C G T A G T C
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets80.0 +/- 0.0bp
Average Position of motif in Background96.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GAGGATATGTTT
AAGGATATNTN-
A C T G C G T A A C T G A C T G C G T A A C G T C G T A A C G T A C T G A C G T A C G T A C G T
T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T A C G T

BHLHE23/MA0817.1/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GAGGATATGTTT
NAACATATGTTT
A C T G C G T A A C T G A C T G C G T A A C G T C G T A A C G T A C T G A C G T A C G T A C G T
G C T A C T G A T G C A T G A C C T G A A C G T T C G A G A C T A C T G A C G T A G C T G C A T

OLIG1/MA0826.1/Jaspar

Match Rank:3
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GAGGATATGTTT
-AACATATGTT-
A C T G C G T A A C T G A C T G C G T A A C G T C G T A A C G T A C T G A C G T A C G T A C G T
A C G T C T G A T G C A G T A C C G T A A C G T T G C A G A C T A C T G A C G T A G C T A C G T

BHLHE22/MA0818.1/Jaspar

Match Rank:4
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GAGGATATGTTT
-ANCATATGGT-
A C T G C G T A A C T G A C T G C G T A A C G T C G T A A C G T A C T G A C G T A C G T A C G T
A C G T C T G A T C G A T G A C C T G A A C G T C T G A G A C T A C T G A C T G A G C T A C G T

OLIG3/MA0827.1/Jaspar

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GAGGATATGTTT
-ANCATATGGT-
A C T G C G T A A C T G A C T G C G T A A C G T C G T A A C G T A C T G A C G T A C G T A C G T
A C G T C T G A T G C A G T A C C T G A A C G T T G C A G A C T C A T G A C T G A G C T A C G T

OLIG2/MA0678.1/Jaspar

Match Rank:6
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GAGGATATGTTT
-ACCATATGGT-
A C T G C G T A A C T G A C T G C G T A A C G T C G T A A C G T A C T G A C G T A C G T A C G T
A C G T C T G A T G A C G T A C C T G A A C G T C G T A G A C T A C T G A C T G G A C T A C G T

Atoh1/MA0461.2/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GAGGATATGTTT
-ANCATATGTT-
A C T G C G T A A C T G A C T G C G T A A C G T C G T A A C G T A C T G A C G T A C G T A C G T
A C G T C T G A T G C A G T A C G C T A A C G T G T C A A G C T A C T G A C G T A G C T A C G T

FOXA1/MA0148.4/Jaspar

Match Rank:8
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GAGGATATGTTT----
----NNATGTTTACAT
A C T G C G T A A C T G A C T G C G T A A C G T C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A G T A C G C T A C G A T C T A G G C A T C A G T A C G T C T G A G A T C G C T A G C A T

NEUROG1/MA0623.2/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GAGGATATGTTT
-GACATATGTC-
A C T G C G T A A C T G A C T G C G T A A C G T C G T A A C G T A C T G A C G T A C G T A C G T
A C G T T C A G T G C A A T G C C T G A G A C T C T G A A G C T A C T G A C G T A G T C A C G T

NEUROG2/MA0669.1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GAGGATATGTTT
-GACATATGTT-
A C T G C G T A A C T G A C T G C G T A A C G T C G T A A C G T A C T G A C G T A C G T A C G T
A C G T C T A G T C G A A G T C C G T A A C G T T G C A A G C T C T A G A C G T A G C T A C G T