Information for 1-CGTGAATCTA (Motif 1)

A G T C A C T G A C G T A C T G C G T A C G T A A C G T A G T C A C G T C G T A
Reverse Opposite:
A C G T C G T A A C T G C G T A A C G T A C G T A G T C C G T A A G T C A C T G
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets6.0 +/- 0.0bp
Average Position of motif in Background102.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----CGTGAATCTA
NNTNTCATGAATGT-
A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T A C T G C G T A C G T A A C G T A G T C A C G T C G T A
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T

Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer

Match Rank:2
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CGTGAATCTA
NHGTCGTGAYDN--
A C G T A C G T A C G T A C G T A G T C A C T G A C G T A C T G C G T A C G T A A C G T A G T C A C G T C G T A
C T A G G T C A C A T G A C G T A T G C T C A G C A G T A C T G G T C A A G T C C G A T A G T C A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:3
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CGTGAATCTA---
NTTNTATGAATGTGNNC
A C G T A C G T A C G T A C G T A G T C A C T G A C G T A C T G C G T A C G T A A C G T A G T C A C G T C G T A A C G T A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

PB0171.1_Sox18_2/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CGTGAATCTA----
NNNNTGAATTCANNNC
A C G T A C G T A G T C A C T G A C G T A C T G C G T A C G T A A C G T A G T C A C G T C G T A A C G T A C G T A C G T A C G T
A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C

Pax2/MA0067.1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CGTGAATCTA
NCGTGACN---
A C G T A G T C A C T G A C G T A C T G C G T A C G T A A C G T A G T C A C G T C G T A
T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T A C G T A C G T

PB0007.1_Bhlhb2_1/Jaspar

Match Rank:6
Score:0.57
Offset:-10
Orientation:reverse strand
Alignment:----------CGTGAATCTA--
NTNNTNGTCACGTGACNNNTNC
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T A C T G C G T A C G T A A C G T A G T C A C G T C G T A A C G T A C G T
C T A G G C A T C T G A A G C T C A G T T C A G T A C G C A G T G T A C C T G A A G T C T C A G G A C T A C T G G T C A G A T C A G C T T G A C G C A T C G A T G A T C G A T C

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CGTGAATCTA
GGACGTGC-----
A C G T A C G T A C G T A G T C A C T G A C G T A C T G C G T A C G T A A C G T A G T C A C G T C G T A
T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T A C G T A C G T A C G T A C G T

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:8
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CGTGAATCTA
NCYATMAATCAY
A C G T A C G T A G T C A C T G A C G T A C T G C G T A C G T A A C G T A G T C A C G T C G T A
T A C G G A T C G A T C C T G A A G C T G T C A G C T A T C G A C G A T G A T C G C T A G A C T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CGTGAATCTA
TGCGTG------
A C G T A C G T A G T C A C T G A C G T A C T G C G T A C G T A A C G T A G T C A C G T C G T A
G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:10
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CGTGAATCTA
RTACGTGC-----
A C G T A C G T A C G T A G T C A C T G A C G T A C T G C G T A C G T A A C G T A G T C A C G T C G T A
C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T A C G T A C G T A C G T