Information for 2-AATGGGCTGCTA (Motif 3)

C G T A C G T A A C G T A C T G A C T G A C T G A G T C A C G T A C T G A G T C A C G T C G T A
Reverse Opposite:
A C G T C G T A A C T G A G T C C G T A A C T G A G T C A G T C A G T C C G T A A C G T A C G T
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets69.0 +/- 0.0bp
Average Position of motif in Background11.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SREBF2/MA0596.1/Jaspar

Match Rank:1
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AATGGGCTGCTA
-ATGGGGTGAT-
C G T A C G T A A C G T A C T G A C T G A C T G A G T C A C G T A C T G A G T C A C G T C G T A
A C G T T C G A A C G T A T C G C T A G A T C G T A C G A C G T A C T G C G T A A G C T A C G T

PB0098.1_Zfp410_1/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AATGGGCTGCTA--
TATTATGGGATGGATAA
A C G T A C G T A C G T C G T A C G T A A C G T A C T G A C T G A C T G A G T C A C G T A C T G A G T C A C G T C G T A A C G T A C G T
C G A T T C G A C A G T C G A T G T C A C G A T C A T G C A T G C A T G C T G A C A G T C T A G A C T G T G C A C A G T C G T A T G C A

PB0054.1_Rfx3_1/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AATGGGCTGCTA---------
NTNNNNNGTTGCTANGGNNCANA
A C G T A C G T C G T A C G T A A C G T A C T G A C T G A C T G A G T C A C G T A C T G A G T C A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AATGGGCTGCTA
-ATGGGGTGAT-
C G T A C G T A A C G T A C T G A C T G A C T G A G T C A C G T A C T G A G T C A C G T C G T A
A C G T T C G A A G C T C A T G A C T G A T C G T A C G G A C T A T C G C G T A A G C T A C G T

SREBF1/MA0595.1/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AATGGGCTGCTA
-GTGGGGTGAT-
C G T A C G T A A C G T A C T G A C T G A C T G A G T C A C G T A C T G A G T C A C G T C G T A
A C G T T C A G A C G T A T C G C T A G A T C G A T C G A C G T A C T G C G T A A G C T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AATGGGCTGCTA
GTTAATGGCC-----
A C G T A C G T A C G T C G T A C G T A A C G T A C T G A C T G A C T G A G T C A C G T A C T G A G T C A C G T C G T A
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T A C G T A C G T A C G T

Isl1/MA1608.1/Jaspar

Match Rank:7
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----AATGGGCTGCTA
NNCTAATGGNN-----
A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C T G A C T G A C T G A G T C A C G T A C T G A G T C A C G T C G T A
A C G T T C A G G A T C C G A T C T G A C G T A G A C T C A T G C T A G T G C A G A C T A C G T A C G T A C G T A C G T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:AATGGGCTGCTA-----
--NCCGTTGCTANGNGN
C G T A C G T A A C G T A C T G A C T G A C T G A G T C A C G T A C T G A G T C A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

PB0055.1_Rfx4_1/Jaspar

Match Rank:9
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:AATGGGCTGCTA-----
--NNCGTTGCTATGGNN
C G T A C G T A A C G T A C T G A C T G A C T G A G T C A C G T A C T G A G T C A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

PB0132.1_Hbp1_2/Jaspar

Match Rank:10
Score:0.55
Offset:-7
Orientation:reverse strand
Alignment:-------AATGGGCTGCTA
NNTNNACAATGGGANNN--
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C T G A C T G A C T G A G T C A C G T A C T G A G T C A C G T C G T A
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A A C G T A C G T