Information for 2-ATGATAATGACC (Motif 3)

C G T A A C G T A C T G C G T A A C G T C G T A C G T A A C G T A C T G C G T A A G T C A G T C
Reverse Opposite:
A C T G A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C G T A G T C C G T A A C G T
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets27.0 +/- 0.0bp
Average Position of motif in Background91.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR1H4/MA1110.1/Jaspar

Match Rank:1
Score:0.72
Offset:3
Orientation:forward strand
Alignment:ATGATAATGACC--
---TCAATGACCTA
C G T A A C G T A C T G C G T A A C G T C G T A C G T A A C G T A C T G C G T A A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A G T C C G T A C T G A A G C T C T A G G T C A G T A C G T A C A G C T G C T A

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-ATGATAATGACC
WATGCAAATGAG-
A C G T C G T A A C G T A C T G C G T A A C G T C G T A C G T A A C G T A C T G C G T A A G T C A G T C
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G A C G T

POU6F1(var.2)/MA1549.1/Jaspar

Match Rank:3
Score:0.69
Offset:3
Orientation:forward strand
Alignment:ATGATAATGACC-
---ATAATGAGGT
C G T A A C G T A C T G C G T A A C G T C G T A C G T A A C G T A C T G C G T A A G T C A G T C A C G T
A C G T A C G T A C G T C T G A G A C T T C G A C G T A A C G T A C T G G C T A A C T G T A C G C G A T

HOXA6/MA1497.1/Jaspar

Match Rank:4
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:ATGATAATGACC
--NNTAATTACN
C G T A A C G T A C T G C G T A A C G T C G T A C G T A A C G T A C T G C G T A A G T C A G T C
A C G T A C G T T A C G G A C T G C A T G C T A C G T A A G C T C A G T T C G A T A G C T G A C

HOXA4/MA1496.1/Jaspar

Match Rank:5
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:ATGATAATGACC
---NTAATGAC-
C G T A A C G T A C T G C G T A A C G T C G T A C G T A A C G T A C T G C G T A A G T C A G T C
A C G T A C G T A C G T A G T C A G C T T C G A G T C A A G C T A C T G C T G A A G T C A C G T

NKX6-3/MA1530.1/Jaspar

Match Rank:6
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:ATGATAATGACC
--TTTAATGAN-
C G T A A C G T A C T G C G T A A C G T C G T A C G T A A C G T A C T G C G T A A G T C A G T C
A C G T A C G T C G A T C G A T A G C T C T G A C G T A A C G T T C A G C T G A A T C G A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-ATGATAATGACC
TATGCWAATBAV-
A C G T C G T A A C G T A C T G C G T A A C G T C G T A C G T A A C G T A C T G C G T A A G T C A G T C
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G A C G T

EVX1/MA0887.1/Jaspar

Match Rank:8
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:ATGATAATGACC
--GNTAATTANN
C G T A A C G T A C T G C G T A A C G T C G T A C G T A A C G T A C T G C G T A A G T C A G T C
A C G T A C G T A T C G T A G C G A C T C T G A T G C A A G C T A G C T C T G A A T G C A G T C

PH0073.1_Hoxc9/Jaspar

Match Rank:9
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-ATGATAATGACC---
NNAATTAATGACCNNN
A C G T C G T A A C G T A C T G C G T A A C G T C G T A C G T A A C G T A C T G C G T A A G T C A G T C A C G T A C G T A C G T
T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C

PH0151.1_Pou6f1_1/Jaspar

Match Rank:10
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-ATGATAATGACC----
GACGATAATGAGCTTGC
A C G T C G T A A C G T A C T G C G T A A C G T C G T A C G T A A C G T A C T G C G T A A G T C A G T C A C G T A C G T A C G T A C G T
T A C G G C T A T G A C T A C G G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G A T C G G C A T C A G T C T A G G T A C