Information for 4-CCAATTAACTAC (Motif 5)

A G T C A G T C C G T A C G T A A C G T A C G T C G T A C G T A A G T C A C G T C G T A A G T C
Reverse Opposite:
A C T G A C G T C G T A A C T G A C G T A C G T C G T A C G T A A C G T A C G T A C T G A C T G
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.0 +/- 0.0bp
Average Position of motif in Background153.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MSX2/MA0708.1/Jaspar

Match Rank:1
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CCAATTAACTAC
CCAATTAA----
A G T C A G T C C G T A C G T A A C G T A C G T C G T A C G T A A G T C A C G T C G T A A G T C
T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A A C G T A C G T A C G T A C G T

LHX2/MA0700.2/Jaspar

Match Rank:2
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CCAATTAACTAC
AACCAATTAAT---
A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C G T C G T A C G T A A G T C A C G T C G T A A G T C
C G T A C G T A A T G C G A T C G C T A G C T A C G A T C G A T G C T A C G T A G C A T A C G T A C G T A C G T

ESX1/MA0644.1/Jaspar

Match Rank:3
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-CCAATTAACTAC
ACCAATTAAC---
A C G T A G T C A G T C C G T A C G T A A C G T A C G T C G T A C G T A A G T C A C G T C G T A A G T C
T C G A G A T C G A T C T C G A G T C A G A C T G A C T G C T A T C G A G T A C A C G T A C G T A C G T

LBX2/MA0699.1/Jaspar

Match Rank:4
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-CCAATTAACTAC
GCCAATTAGC---
A C G T A G T C A G T C C G T A C G T A A C G T A C G T C G T A C G T A A G T C A C G T C G T A A G T C
T C A G A G T C G A T C T G C A T G C A A C G T A C G T C G T A C T A G T A G C A C G T A C G T A C G T

RAX/MA0718.1/Jaspar

Match Rank:5
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-CCAATTAACTAC
GCCAATTAAC---
A C G T A G T C A G T C C G T A C G T A A C G T A C G T C G T A C G T A A G T C A C G T C G T A A G T C
T C A G A G T C G A T C G C T A G T C A C G A T G A C T C G T A C T G A G A T C A C G T A C G T A C G T

HESX1/MA0894.1/Jaspar

Match Rank:6
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-CCAATTAACTAC
NCCAATTANC---
A C G T A G T C A G T C C G T A C G T A A C G T A C G T C G T A C G T A A G T C A C G T C G T A A G T C
C T A G A G T C G A T C C T G A G T C A A G C T G A C T G C T A C T A G A G T C A C G T A C G T A C G T

Msx3/MA0709.1/Jaspar

Match Rank:7
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CCAATTAACTAC
CCAATTAA----
A G T C A G T C C G T A C G T A A C G T A C G T C G T A C G T A A G T C A C G T C G T A A G T C
T A G C G A T C T C G A T G C A A C G T G A C T C G T A T C G A A C G T A C G T A C G T A C G T

MSX1/MA0666.1/Jaspar

Match Rank:8
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CCAATTAACTAC
CCAATTAG----
A G T C A G T C C G T A C G T A A C G T A C G T C G T A C G T A A G T C A C G T C G T A A G T C
A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G A C G T A C G T A C G T A C G T

PH0154.1_Prrx1/Jaspar

Match Rank:9
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CCAATTAACTAC-
GTAACTAATTAACTACT
A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C G T C G T A C G T A A G T C A C G T C G T A A G T C A C G T
T A C G A C G T G T C A T C G A A G T C G A C T T C G A C T G A A G C T A G C T C T G A T C G A A G T C C A G T C T G A T A G C A G C T

GBX1/MA0889.1/Jaspar

Match Rank:10
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CCAATTAACTAC
ACTAATTAGC---
A C G T A G T C A G T C C G T A C G T A A C G T A C G T C G T A C G T A A G T C A C G T C G T A A G T C
T C G A A T G C G A C T T C G A T G C A G A C T G A C T G C T A T A C G A G T C A C G T A C G T A C G T