Information for 9-GTTTATTGGC (Motif 19)

A C T G A C G T A C G T A C G T C G T A A C G T A C G T A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C C G T A C G T A A C G T C G T A C G T A C G T A A G T C
p-value:1e-3
log p-value:-7.780e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif39.2
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets102.0 +/- 0.0bp
Average Position of motif in Background103.7 +/- 67.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA13/MA0650.2/Jaspar

Match Rank:1
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-GTTTATTGGC
GTTTTATTGGN
A C G T A C T G A C G T A C G T A C G T C G T A A C G T A C G T A C T G A C T G A G T C
C A T G C A G T A C G T A G C T A G C T C G T A A C G T A C G T C T A G A T C G A C T G

HOXD13/MA0909.2/Jaspar

Match Rank:2
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-GTTTATTGGC
GTTTTATTGGG
A C G T A C T G A C G T A C G T A C G T C G T A A C G T A C G T A C T G A C T G A G T C
A C T G A C G T A C G T A G C T A C G T C G T A A G C T A C G T A C T G A T C G A T C G

HOXB13/MA0901.2/Jaspar

Match Rank:3
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---GTTTATTGGC-
NNATTTTATTGGNN
A C G T A C G T A C G T A C T G A C G T A C G T A C G T C G T A A C G T A C G T A C T G A C T G A G T C A C G T
C G T A C G T A C G T A C G A T C G A T C G A T G C A T T G C A G C A T C G A T C T A G C A T G G C A T G C A T

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:GTTTATTGGC
TTTNATTGCY
A C T G A C G T A C G T A C G T C G T A A C G T A C G T A C T G A C T G A G T C
A C G T A C G T C G A T A C G T G T C A A C G T C A G T C T A G A T G C G A T C

PH0057.1_Hoxb13/Jaspar

Match Rank:5
Score:0.76
Offset:-4
Orientation:reverse strand
Alignment:----GTTTATTGGC--
NNAATTTTATTGGNTN
A C G T A C G T A C G T A C G T A C T G A C G T A C G T A C G T C G T A A C G T A C G T A C T G A C T G A G T C A C G T A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GTTTATTGGC
TTTTATTRGN
A C T G A C G T A C G T A C G T C G T A A C G T A C G T A C T G A C T G A G T C
C G A T A C G T A C G T G C A T C G T A G A C T C A G T C T A G A T C G G A T C

CDX2/MA0465.2/Jaspar

Match Rank:7
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-GTTTATTGGC-
NTTTTATTGCNN
A C G T A C T G A C G T A C G T A C G T C G T A A C G T A C G T A C T G A C T G A G T C A C G T
C G A T G C A T C G A T G C A T G C A T T C G A G A C T C A G T C T A G G A T C G C A T G A C T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:8
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GTTTATTGGC
TTTTATKRGG
A C T G A C G T A C G T A C G T C G T A A C G T A C G T A C T G A C T G A G T C
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

PH0078.1_Hoxd13/Jaspar

Match Rank:9
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----GTTTATTGGC--
NNANTTTTATTGGNNN
A C G T A C G T A C G T A C G T A C T G A C G T A C G T A C G T C G T A A C G T A C G T A C T G A C T G A G T C A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

POL004.1_CCAAT-box/Jaspar

Match Rank:10
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:GTTTATTGGC----
--TGATTGGCTANN
A C T G A C G T A C G T A C G T C G T A A C G T A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T