Information for 1-CTTGTTAGCG (Motif 1)

A G T C A C G T A C G T A C T G A C G T A C G T C G T A A C T G A G T C A C T G
Reverse Opposite:
A G T C A C T G A G T C A C G T C G T A C G T A A G T C C G T A C G T A A C T G
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets143.0 +/- 0.0bp
Average Position of motif in Background66.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0172.1_Sox1_2/Jaspar

Match Rank:1
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CTTGTTAGCG
CTATAATTGTTAGCG
A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C G T A C G T C G T A A C T G A G T C A C T G
G T A C A G C T C T G A G A C T G C T A C T G A G A C T A G C T T A C G A C G T A C G T T G C A A C G T A G T C T A C G

PH0040.1_Hmbox1/Jaspar

Match Rank:2
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CTTGTTAGCG--
GAAAACTAGTTAACATC
A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C G T A C G T C G T A A C T G A G T C A C T G A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

PH0032.1_Evx2/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CTTGTTAGCG---
ANCGCTAATTAGCGGTN
A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C G T A C G T C G T A A C T G A G T C A C T G A C G T A C G T A C G T
C G T A T G A C T G A C T A C G T A G C A G C T T G C A C G T A A C G T A C G T C T G A T A C G A G T C C A T G C T A G A C G T T C A G

HMBOX1/MA0895.1/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CTTGTTAGCG
ACTAGTTAAC-
A C G T A G T C A C G T A C G T A C T G A C G T A C G T C G T A A C T G A G T C A C T G
T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C A C G T

PH0098.1_Lhx8/Jaspar

Match Rank:5
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CTTGTTAGCG---
ACCCCTAATTAGCGGTG
A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C G T A C G T C G T A A C T G A G T C A C T G A C G T A C G T A C G T
G C T A T G A C T G A C T G A C T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A G T C C A T G C A T G A C G T C T A G

PH0168.1_Hnf1b/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CTTGTTAGCG---
ANNNCTAGTTAACNGNN
A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C G T A C G T C G T A A C T G A G T C A C T G A C G T A C G T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

MF0011.1_HMG_class/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CTTGTTAGCG
ATTGTT----
A G T C A C G T A C G T A C T G A C G T A C G T C G T A A C T G A G T C A C T G
G C T A A C G T G A C T C T A G G C A T A G C T A C G T A C G T A C G T A C G T

PH0097.1_Lhx6_2/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CTTGTTAGCG---
TCCACTAATTAGCGGTT
A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C G T A C G T C G T A A C T G A G T C A C T G A C G T A C G T A C G T
G C A T T G A C G A T C T C G A G A T C G A C T T C G A C T G A A G C T A G C T C T G A C T A G A G T C C A T G C T A G C G A T A C G T

SRY/MA0084.1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTTGTTAGCG
ATTGTTTAN-
A G T C A C G T A C G T A C T G A C G T A C G T C G T A A C T G A G T C A C T G
G C T A A G C T A C G T C T A G C G A T C G A T G C A T G C T A G T A C A C G T

Sox5/MA0087.1/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CTTGTTAGCG
ATTGTTA---
A G T C A C G T A C G T A C T G A C G T A C G T C G T A A C T G A G T C A C T G
C G T A A C G T A C G T C T A G A G C T G A C T C G A T A C G T A C G T A C G T