Information for 21-GTTTAGCATC (Motif 34)

A C T G A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C G T A G T C
Reverse Opposite:
A C T G C G T A A C G T A C T G A G T C A C G T C G T A C G T A C G T A A G T C
p-value:1e-2
log p-value:-6.905e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif34.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets50.0 +/- 0.0bp
Average Position of motif in Background99.7 +/- 95.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GTTTAGCATC
BTVATTWGCATA
A C G T A C G T A C T G A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C G T A G T C
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

BARHL1/MA0877.2/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GTTTAGCATC
NCGTTTAN----
A C G T A C G T A C T G A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C G T A G T C
G T A C G A T C C T A G G C A T A C G T G C A T C G T A A T C G A C G T A C G T A C G T A C G T

BARHL2/MA0635.1/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GTTTAGCATC
ANCGTTTANN---
A C G T A C G T A C G T A C T G A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C G T A G T C
C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C A C G T A C G T A C G T

POU5F1/MA1115.1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GTTTAGCATC-
NATTTGCATNN
A C T G A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C G T A G T C A C G T
G T C A C G T A C G A T G A C T C G A T T C A G G A T C C T G A A G C T C G T A G C A T

POU5F1B/MA0792.1/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GTTTAGCATC
-ATTTGCATA
A C T G A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C G T A G T C
A C G T G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GTTTAGCATC
CTCATTTGCATW
A C G T A C G T A C T G A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C G T A G T C
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A

POU3F4/MA0789.1/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GTTTAGCATC
-ATTTGCATA
A C T G A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C G T A G T C
A C G T G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GTTTAGCATC-
-ATTTGCATAA
A C T G A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C G T A G T C A C G T
A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

FOXF2/MA0030.1/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GTTTAGCATC-
NTTGTTTACGTTNN
A C G T A C G T A C G T A C T G A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C G T A G T C A C G T
G C T A C G A T A C G T C T A G A C G T A C G T A C G T C G T A A G T C A T C G A C G T C A G T A C G T T C A G

PB0029.1_Hic1_1/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GTTTAGCATC--
NGTAGGTTGGCATNNN
A C G T A C G T A C G T A C G T A C T G A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C G T A G T C A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T