Information for 3-GGGACATAGACC (Motif 4)

A C T G A C T G A C T G C G T A A G T C C G T A A C G T C G T A A C T G C G T A A G T C A G T C
Reverse Opposite:
A C T G A C T G A C G T A G T C A C G T C G T A A C G T A C T G A C G T A G T C A G T C A G T C
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2::RXRA/MA1147.1/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GGGACATAGACC--
GAGGTCATTGACCCC
A C G T A C T G A C T G A C T G C G T A A G T C C G T A A C G T C G T A A C T G C G T A A G T C A G T C A C G T A C G T
T C A G T C G A C A T G C A T G A G C T A G T C T C G A C G A T A G C T T A C G T G C A G T A C G T A C A G T C A G T C

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GGGACATAGACC--
AGGTCANTGACCTN
A C T G A C T G A C T G C G T A A G T C C G T A A C G T C G T A A C T G C G T A A G T C A G T C A C G T A C G T
T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

NR1H4::RXRA/MA1146.1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GGGACATAGACC--
GAGGTCATTGACCTT
A C G T A C T G A C T G A C T G C G T A A G T C C G T A A C G T C G T A A C T G C G T A A G T C A G T C A C G T A C G T
T C A G T C G A C T A G C A T G A C G T A G T C C T G A G C A T A G C T T C A G T G C A G T A C G T A C A G C T A G C T

NR2F1(var.3)/MA1538.1/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GGGACATAGACC--
AAGGTCANTGACCTT
A C G T A C T G A C T G A C T G C G T A A G T C C G T A A C G T C G T A A C T G C G T A A G T C A G T C A C G T A C G T
C T G A C T G A A C T G T C A G A C G T A G T C T C G A T G C A A G C T T C A G T G C A G A T C T G A C G A C T G A C T

NR2F6(var.3)/MA1539.1/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GGGACATAGACC--
AAGGTCANTGACCTT
A C G T A C T G A C T G A C T G C G T A A G T C C G T A A C G T C G T A A C T G C G T A A G T C A G T C A C G T A C G T
C T G A T C G A C A T G C A T G A C G T A G T C T C G A T A C G G A C T T C A G T G C A G T A C G T A C A G C T G A C T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GGGACATAGACC
GGAACAAAGR--
A C T G A C T G A C T G C G T A A G T C C G T A A C G T C G T A A C T G C G T A A G T C A G T C
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T

CDX1/MA0878.2/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GGGACATAGACC
-GGCCATAAAAC
A C T G A C T G A C T G C G T A A G T C C G T A A C G T C G T A A C T G C G T A A G T C A G T C
A C G T C A T G C T A G A G T C T G A C C G T A A C G T C T G A C G T A C T G A G T C A A G T C

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:8
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GGGACATAGACC-
CANAGNNCAAAGTCCA
A C G T A C G T A C G T A C T G A C T G A C T G C G T A A G T C C G T A A C G T C G T A A C T G C G T A A G T C A G T C A C G T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

CDX4/MA1473.1/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GGGACATAGACC
-GGCAATAAAAC
A C T G A C T G A C T G C G T A A G T C C G T A A C G T C G T A A C T G C G T A A G T C A G T C
A C G T C A T G T C A G A G T C T G C A C G T A A C G T C G T A C G T A G T C A G T C A A G T C

SOX10/MA0442.2/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GGGACATAGACC
AAAACAAAGAA-
A C T G A C T G A C T G C G T A A G T C C G T A A C G T C G T A A C T G C G T A A G T C A G T C
C T G A C T G A T G C A G C T A A G T C C G T A G C T A G C T A A C T G T C G A T G C A A C G T