Information for 13-GCCTTTTTCTGA (Motif 13)

A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A A C T G C G T A C G T A C G T A C G T A C G T A A C T G A C T G A G T C
p-value:1e-4
log p-value:-9.624e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets138.0 +/- 0.0bp
Average Position of motif in Background128.3 +/- 70.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GCCTTTTTCTGA--
ANTCCTTTGTCTNNNN
A C G T A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G T A A C G T A C G T
C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T

PB0148.1_Mtf1_2/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GCCTTTTTCTGA---
-NNTTTTTCTTATNT
A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G T A A C G T A C G T A C G T
A C G T A C T G G C A T A C G T C G A T C G A T C G A T C A G T G T A C C G A T C G A T G T C A C G A T G C A T C A G T

Sox3/MA0514.1/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCCTTTTTCTGA
-CCTTTGTTTT-
A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G T A
A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T

PRDM4/MA1647.1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCCTTTTTCTGA
GTCTGTTTCTA-
A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G T A
C T A G C A G T T A G C C G A T T C A G G C A T A G C T G C A T G T A C G C A T G C T A A C G T

PRDM1/MA0508.3/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCCTTTTTCTGA
TTCTTTCTCTT-
A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G T A
G A C T G C A T G T A C C G A T G C A T C G A T G T A C C G A T G T A C G A C T G A C T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCCTTTTTCTGA
-CCWTTGTY---
A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G T A
A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T A C G T

ZNF384/MA1125.1/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GCCTTTTTCTGA--
--TTTTTTTTTANN
A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G T A A C G T A C G T
A C G T A C G T C G A T C G A T C G A T C G A T G C A T G C A T C G A T G C A T C A G T G C T A C G T A G C T A

HOXC10/MA0905.1/Jaspar

Match Rank:8
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GCCTTTTTCTGA-
---NTTTTACGAC
A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G T A A C G T
A C G T A C G T A C G T C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C

Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GCCTTTTTCTGA
BCCWTTGTBYKV
A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G T A
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A T G C G A C T A C T G T A C G

PB0137.1_Irf3_2/Jaspar

Match Rank:10
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GCCTTTTTCTGA
NNGCACCTTTCTCC--
A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G T A
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C A C G T A C G T