Information for 1-CGTCGGGT (Motif 20)

A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T
Reverse Opposite:
C G T A A G T C A G T C A G T C A C T G C G T A A G T C A C T G
p-value:1e-3
log p-value:-7.073e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif79.7
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets141.0 +/- 0.0bp
Average Position of motif in Background99.2 +/- 73.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0179.1_Sp100_2/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CGTCGGGT-----
TCCGTCGCTTAAAAG
A C G T A C G T A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T G C G A T C T C A G G C A T T G A C A C T G G A T C A C G T C A G T G C T A C G T A G C T A C G T A A C T G

PB0153.1_Nr2f2_2/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CGTCGGGT------
CGCGCCGGGTCACGTA
A C G T A C G T A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

PB0157.1_Rara_2/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CGTCGGGT------
AGAGCGGGGTCAAGTA
A C G T A C G T A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CGTCGGGT
CTGTCTGG-
A C G T A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T

ETS2/MA1484.1/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CGTCGGGT-
ACTTCCGGTN
A C G T A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T A C G T
T C G A A G T C C G A T A C G T A T G C G A T C A C T G A T C G G A C T G A T C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CGTCGGGT
VBSYGTCTGG-
A C G T A C G T A C G T A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----CGTCGGGT----
NNTNNTGTCTGGNNTNG
A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

ELK1/MA0028.2/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CGTCGGGT
NACTTCCGGT
A C G T A C G T A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T
G A T C T C G A A G T C C G A T A C G T T G A C T G A C A C T G A T C G G A C T

PB0020.1_Gabpa_1/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CGTCGGGT----
NNNNACTTCCGGTATNN
A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T C G A T C T G A G T A C C T G A A G T C C G A T C G A T A G T C A G T C A C T G A T C G G A C T C G T A C G A T A C G T C A T G

SREBF1/MA0595.1/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CGTCGGGT---
-GTGGGGTGAT
A G T C A C T G A C G T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A C G T
A C G T T C A G A C G T A T C G C T A G A T C G A T C G A C G T A C T G C G T A A G C T