Information for 2-AGAGAGATATCA (Motif 3)

C G T A A C T G C G T A A C T G C G T A A C T G C G T A A C G T C G T A A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A C G T C G T A A C G T A G T C A C G T A G T C A C G T A G T C A C G T
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets112.0 +/- 0.0bp
Average Position of motif in Background129.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0126.1_Gata5_2/Jaspar

Match Rank:1
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-AGAGAGATATCA----
GACAGAGATATCAGTGT
A C G T C G T A A C T G C G T A A C T G C G T A A C T G C G T A A C G T C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T

GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGAGAGATATCA--
NAGATWNBNATCTNN
A C G T C G T A A C T G C G T A A C T G C G T A A C T G C G T A A C G T C G T A A C G T A G T C C G T A A C G T A C G T
A T G C C G T A A C T G C G T A A C G T G C T A T C G A A G C T C G A T C G T A A C G T A G T C C G A T A C T G G A T C

PH0166.1_Six6_2/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGAGAGATATCA-----
AATAGGGTATCAATATT
C G T A A C T G C G T A A C T G C G T A A C T G C G T A A C G T C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C T G A C G T A C G A T T C G A C T A G C A T G T C A G C A G T C T G A A C G T G A T C G C T A G C T A G A C T G C T A G A C T A C G T

PH0161.1_Six1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGAGAGATATCA-----
GATGGGGTATCATTTTT
C G T A A C T G C G T A A C T G C G T A A C T G C G T A A C G T C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C T A G G C T A C A G T T C A G C T A G A T C G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C A G T G C A T A C G T C A G T

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:5
Score:0.60
Offset:4
Orientation:forward strand
Alignment:AGAGAGATATCA
----AGATAASR
C G T A A C T G C G T A A C T G C G T A A C T G C G T A A C G T C G T A A C G T A G T C C G T A
A C G T A C G T A C G T A C G T G C T A A T C G G C T A G A C T G C T A T C G A T A G C T C G A

PB0059.1_Six6_1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGAGAGATATCA-----
AATAGGGTATCATATAT
C G T A A C T G C G T A A C T G C G T A A C T G C G T A A C G T C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C T G A G C T A C G A T T C G A C T A G A C T G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C G T A C G A T G C T A G A C T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AGAGAGATATCA-
--AAGGATATNTN
C G T A A C T G C G T A A C T G C G T A A C T G C G T A A C G T C G T A A C G T A G T C C G T A A C G T
A C G T A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

PH0037.1_Hdx/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGAGAGATATCA-----
AAGGCGAAATCATCGCA
C G T A A C T G C G T A A C T G C G T A A C T G C G T A A C G T C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

PH0162.1_Six2/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGAGAGATATCA-----
AATGGGGTATCACGTTT
C G T A A C T G C G T A A C T G C G T A A C T G C G T A A C G T C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C T G A G C T A C A G T T C A G C T A G A C T G C T A G A C G T C T G A A C G T G A T C C T G A G A T C C A G T G C A T G A C T C A G T

PB0021.1_Gata3_1/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AGAGAGATATCA-------
TTTTTAGAGATAAGAAATAAAG
A C G T A C G T A C G T C G T A A C T G C G T A A C T G C G T A A C T G C G T A A C G T C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A G T G C A T C A G T C G A T C T G A C A T G G C T A A C T G C G T A C G A T G C T A C G T A T A C G T G C A C T G A G C T A A C G T C G T A G T C A T C G A C A T G