Information for 2-CATGAYATCAAT (Motif 2)

A T G C C G T A C G A T A T C G G C T A G A C T T G C A A G C T A T G C G C T A G C T A C G A T
Reverse Opposite:
G C T A C G A T C A G T A T C G C T G A A C G T C T G A C G A T T A G C G C T A G C A T T A C G
p-value:1e-7
log p-value:-1.688e+01
Information Content per bp:1.742
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif44.44%
Number of Background Sequences with motif420.8
Percentage of Background Sequences with motif0.44%
Average Position of motif in Targets95.8 +/- 49.2bp
Average Position of motif in Background100.1 +/- 93.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:1
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CATGAYATCAAT
--HNRAATCAAT
A T G C C G T A C G A T A T C G G C T A G A C T T G C A A G C T A T G C G C T A G C T A C G A T
A C G T A C G T G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T

CREB1/MA0018.4/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CATGAYATCAAT-
NATGACATCANNN
A T G C C G T A C G A T A T C G G C T A G A C T T G C A A G C T A T G C G C T A G C T A C G A T A C G T
C A G T T C G A G C A T A C T G C G T A T A G C T C G A G C A T T G A C G C T A A G C T G T C A C G T A

JUND(var.2)/MA0492.1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CATGAYATCAAT---
NATGACATCATCNNN
A T G C C G T A C G A T A T C G G C T A G A C T T G C A A G C T A T G C G C T A G C T A C G A T A C G T A C G T A C G T
A C T G T C G A A C G T A C T G C T G A A G T C T C G A A C G T G T A C C G T A A G C T A G T C G C A T G A C T G C A T

Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer

Match Rank:4
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:CATGAYATCAAT-
-----RRTCAATA
A T G C C G T A C G A T A T C G G C T A G A C T T G C A A G C T A T G C G C T A G C T A C G A T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G C T G A A G C T G T A C C T G A C G T A A C G T C G T A

PH0164.1_Six4/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CATGAYATCAAT--
ATAAATGACACCTATCA
A C G T A C G T A C G T A T G C C G T A C G A T A T C G G C T A G A C T T G C A A G C T A T G C G C T A G C T A C G A T A C G T A C G T
G C T A C A G T C T G A G T C A G C T A A G C T C A T G G T C A A G T C G T C A G T A C A G T C A G C T G T C A A G C T A G T C T C G A

ONECUT1/MA0679.2/Jaspar

Match Rank:6
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CATGAYATCAAT-----
-AAAAAATCAATAAATA
A T G C C G T A C G A T A T C G G C T A G A C T T G C A A G C T A T G C G C T A G C T A C G A T A C G T A C G T A C G T A C G T A C G T
A C G T C G T A C G T A C G T A G C T A C T G A C T G A G C A T G T A C C T G A C G T A G A C T C T G A G C T A G C T A G C A T G C T A

CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer

Match Rank:7
Score:0.63
Offset:5
Orientation:forward strand
Alignment:CATGAYATCAAT---
-----TATCGATNAN
A T G C C G T A C G A T A T C G G C T A G A C T T G C A A G C T A T G C G C T A G C T A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A A G C T G A T C C T A G C T G A A G C T G T C A T C G A C G T A

JUN/MA0488.1/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CATGAYATCAAT--
-ATGACATCATCNN
A T G C C G T A C G A T A T C G G C T A G A C T T G C A A G C T A T G C G C T A G C T A C G A T A C G T A C G T
A C G T T C G A A C G T A C T G C T G A A T G C T G C A C G A T G T A C C G T A A G C T G A T C G C A T G C A T

PH0014.1_Cphx/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CATGAYATCAAT
ATGATCGAATCAAA
A C G T A C G T A T G C C G T A C G A T A T C G G C T A G A C T T G C A A G C T A T G C G C T A G C T A C G A T
C T G A C G A T T C A G C G T A C A G T A T G C T A C G T G C A G T C A G A C T A G T C C G T A T C G A G C T A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:10
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CATGAYATCAAT---
---GYCATCMATCAT
A T G C C G T A C G A T A T C G G C T A G A C T T G C A A G C T A T G C G C T A G C T A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T