Information for 5-GGATTTTTATGA (Motif 5)

A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A A C G T C G T A C G T A C G T A C G T A C G T A A C G T A G T C A G T C
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets63.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC10/MA0905.1/Jaspar

Match Rank:1
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:GGATTTTTATGA-
---NTTTTACGAC
A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T
A C G T A C G T A C G T C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C

Hoxa11/MA0911.1/Jaspar

Match Rank:2
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:GGATTTTTATGA--
--ANTTTTACGACC
A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A C G T
A C G T A C G T G C T A C G T A C G A T C G A T G C A T G C A T G C T A G A T C C T A G T C G A A G T C G A T C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:3
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:GGATTTTTATGA-
---NTTTTATGAC
A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T
A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

PH0064.1_Hoxb9/Jaspar

Match Rank:4
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GGATTTTTATGA----
NGANTTTTATGGCTCN
A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A C G T A C G T A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

HOXD11/MA0908.1/Jaspar

Match Rank:5
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:GGATTTTTATGA-
---NTTTTACGAC
A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T
A C G T A C G T A C G T C G A T C G A T C G A T C G A T C G A T C G T A A G T C C T A G C G T A A G T C

PH0068.1_Hoxc13/Jaspar

Match Rank:6
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:GGATTTTTATGA-----
-NAATTTTACGAGNTNN
A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

HOXA10/MA0899.1/Jaspar

Match Rank:7
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:GGATTTTTATGA--
---NTTTTATTACN
A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A C G T
A C G T A C G T A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

HOXB9/MA1503.1/Jaspar

Match Rank:8
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:GGATTTTTATGA-
---NTTTTACGAC
A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T
A C G T A C G T A C G T C T G A C G A T C A G T A C G T C G A T G T C A A G T C A C T G C T G A A G T C

HOXD10/MA1506.1/Jaspar

Match Rank:9
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:GGATTTTTATGA--
---NTTTTACGACC
A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A C G T
A C G T A C G T A C G T C T A G C G A T C A G T A C G T G C A T G T C A A G T C A C T G T C G A A G T C A G T C

HOXD12/MA0873.1/Jaspar

Match Rank:10
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:GGATTTTTATGA--
---NTTTTACGACT
A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A C G T
A C G T A C G T A C G T C A G T C G A T G C A T A G C T G C A T C T G A A G T C A T C G T C G A A G T C A G C T