Information for 1-CCAATGAGCG (Motif 1)

A G T C A G T C C G T A C G T A A C G T A C T G C G T A A C T G A G T C A C T G
Reverse Opposite:
A G T C A C T G A G T C A C G T A G T C C G T A A C G T A C G T A C T G A C T G
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets5.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--CCAATGAGCG
AGCCAATCGG--
A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C T G C G T A A C T G A G T C A C T G
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T

NFYB/MA0502.2/Jaspar

Match Rank:2
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----CCAATGAGCG
NTGGCCAATGAG--
A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C T G C G T A A C T G A G T C A C T G
A G T C A C G T C T A G T C A G G A T C G T A C G T C A T C G A C G A T T A C G T C G A T A C G A C G T A C G T

NFYA/MA0060.3/Jaspar

Match Rank:3
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CCAATGAGCG
AACCAATCAGA-
A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C T G C G T A A C T G A G T C A C T G
T C G A C T G A A G T C G A T C G C T A T C G A G A C T T A G C T C G A T A C G T G C A A C G T

NFYC/MA1644.1/Jaspar

Match Rank:4
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--CCAATGAGCG
AGCCAATCAGA-
A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C T G C G T A A C T G A G T C A C T G
T C G A C T A G A G T C G T A C G C T A T C G A G A C T T A G C T C G A T A C G T G C A A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----CCAATGAGCG
ACTAGCCAATCA---
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C T G C G T A A C T G A G T C A C T G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T

EN2/MA0642.1/Jaspar

Match Rank:6
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CCAATGAGCG
CCCAATTAGC-
A C G T A G T C A G T C C G T A C G T A A C G T A C T G C G T A A C T G A G T C A C T G
T A G C A T G C A G T C T G C A T G C A A C G T A G C T C T G A T A C G A T G C A C G T

PH0098.1_Lhx8/Jaspar

Match Rank:7
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CCAATGAGCG---
ACCCCTAATTAGCGGTG
A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C T G C G T A A C T G A G T C A C T G A C G T A C G T A C G T
G C T A T G A C T G A C T G A C T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A G T C C A T G C A T G A C G T C T A G

PH0107.1_Msx2/Jaspar

Match Rank:8
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----CCAATGAGCG--
GAAGACCAATTAGCGCT
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C T G C G T A A C T G A G T C A C T G A C G T A C G T
T C A G T G C A C T G A T A C G C T G A A T G C G A T C C G T A G T C A C G A T G A C T C T G A C A T G G A T C C A T G G A T C A G C T

PH0097.1_Lhx6_2/Jaspar

Match Rank:9
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CCAATGAGCG---
TCCACTAATTAGCGGTT
A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C T G C G T A A C T G A G T C A C T G A C G T A C G T A C G T
G C A T T G A C G A T C T C G A G A T C G A C T T C G A C T G A A G C T A G C T C T G A C T A G A G T C C A T G C T A G C G A T A C G T

PH0109.1_Nkx1-1/Jaspar

Match Rank:10
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CCAATGAGCG---
TGCGCTAATTAGTGGGA
A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C T G C G T A A C T G A G T C A C T G A C G T A C G T A C G T
C G A T T A C G G T A C T C A G A G T C G A C T G T C A C G T A C G A T A C G T C T G A T C A G A G C T C A T G T A C G A C T G T C G A