Information for 8-CAGGAGGCAAAC (Motif 8)

A G T C C G T A A C T G A C T G C G T A A C T G A C T G A G T C C G T A C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T A C G T A C T G A G T C A G T C A C G T A G T C A G T C A C G T A C T G
p-value:1e-4
log p-value:-1.043e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets164.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCFL/MA1102.2/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CAGGAGGCAAAC
AGCAGGGGGCGC--
A C G T A C G T A G T C C G T A A C T G A C T G C G T A A C T G A C T G A G T C C G T A C G T A C G T A A G T C
T C G A T A C G A T G C T G C A A T C G T C A G A T C G A T C G C A T G G A T C T C A G A T G C A C G T A C G T

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CAGGAGGCAAAC
CACAGCAGGGG---
A C G T A C G T A G T C C G T A A C T G A C T G C G T A A C T G A C T G A G T C C G T A C G T A C G T A A G T C
T A G C T C G A A G T C T G C A T A C G A G T C T C G A A T C G A C T G T A C G T C A G A C G T A C G T A C G T

ETV4/MA0764.2/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CAGGAGGCAAAC
ACAGGAAGTG---
A C G T A G T C C G T A A C T G A C T G C G T A A C T G A C T G A G T C C G T A C G T A C G T A A G T C
T C G A T A G C G T C A A T C G A C T G C G T A G T C A A C T G A G C T T C A G A C G T A C G T A C G T

Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CAGGAGGCAAAC
HAWGRGGCCM--
A G T C C G T A A C T G A C T G C G T A A C T G A C T G A G T C C G T A C G T A C G T A A G T C
G A C T T C G A C G A T T A C G C T A G T A C G A C T G A T G C G T A C G T A C A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CAGGAGGCAAAC
CCACACAGCAGGAGA--
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C T G C G T A A C T G A C T G A G T C C G T A C G T A C G T A A G T C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CAGGAGGCAAAC--
-AGGTGNCAGACAG
A G T C C G T A A C T G A C T G C G T A A C T G A C T G A G T C C G T A C G T A C G T A A G T C A C G T A C G T
A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CAGGAGGCAAAC
ACAGGAAGTG---
A C G T A G T C C G T A A C T G A C T G C G T A A C T G A C T G A G T C C G T A C G T A C G T A A G T C
T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CAGGAGGCAAAC
CCACACAGCAGGAGA--
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C T G C G T A A C T G A C T G A G T C C G T A C G T A C G T A A G T C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CAGGAGGCAAAC-
-AGGTGHCAGACA
A G T C C G T A A C T G A C T G C G T A A C T G A C T G A G T C C G T A C G T A C G T A A G T C A C G T
A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CAGGAGGCAAAC
ANCAGGATGT----
A C G T A C G T A G T C C G T A A C T G A C T G C G T A A C T G A C T G A G T C C G T A C G T A C G T A A G T C
C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T A C G T A C G T A C G T A C G T