Information for 19-CTCGGTAGCAAC (Motif 21)

A G T C A C G T A G T C A C T G A C T G A C G T C G T A A C T G A G T C C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T A C T G A G T C A C G T C G T A A G T C A G T C A C T G C G T A A C T G
p-value:1e-4
log p-value:-1.024e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets74.0 +/- 0.0bp
Average Position of motif in Background5.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RFX7/MA1554.1/Jaspar

Match Rank:1
Score:0.71
Offset:4
Orientation:reverse strand
Alignment:CTCGGTAGCAAC-
----NTAGCAACG
A G T C A C G T A G T C A C T G A C T G A C G T C G T A A C T G A G T C C G T A C G T A A G T C A C G T
A C G T A C G T A C G T A C G T C T G A G A C T T C G A T A C G G A T C C T G A C T G A A T G C T A C G

PB0054.1_Rfx3_1/Jaspar

Match Rank:2
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----CTCGGTAGCAAC-------
TGTGACCCTTAGCAACCGATTAA
A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C T G A C T G A C G T C G T A A C T G A G T C C G T A C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CTCGGTAGCAAC---
TACCATAGCAACGGT
A G T C A C G T A G T C A C T G A C T G A C G T C G T A A C T G A G T C C G T A C G T A A G T C A C G T A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

OSR1/MA1542.1/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CTCGGTAGCAAC
NACAGTAGCN--
A G T C A C G T A G T C A C T G A C T G A C G T C G T A A C T G A G T C C G T A C G T A A G T C
G T C A T C G A G A T C T C G A A C T G C G A T C T G A C T A G A G T C C T G A A C G T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CTCGGTAGCAAC---
CCGCATAGCAACGGA
A G T C A C G T A G T C A C T G A C T G A C G T C G T A A C T G A G T C C G T A C G T A A G T C A C G T A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

RFX1/MA0509.2/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CTCGGTAGCAAC--
TNCCATAGCAACNN
A G T C A C G T A G T C A C T G A C T G A C G T C G T A A C T G A G T C C G T A C G T A A G T C A C G T A C G T
G A C T C A T G A G T C G A T C G T C A G A C T T C G A C T A G G A T C C T G A T C G A G A T C G T C A T C A G

PB0050.1_Osr1_1/Jaspar

Match Rank:7
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CTCGGTAGCAAC-
ATTTACAGTAGCAAAA
A C G T A C G T A C G T A G T C A C G T A G T C A C T G A C T G A C G T C G T A A C T G A G T C C G T A C G T A A G T C A C G T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

RFX3/MA0798.2/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTCGGTAGCAAC--
TNCCATAGCAACNN
A G T C A C G T A G T C A C T G A C T G A C G T C G T A A C T G A G T C C G T A C G T A A G T C A C G T A C G T
G A C T C A T G A G T C G A T C G T C A A G C T C T G A C T A G G A T C C T G A T C G A G A T C T G A C T C A G

PB0051.1_Osr2_1/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CTCGGTAGCAAC-
ATGTACAGTAGCAAAG
A C G T A C G T A C G T A G T C A C G T A G T C A C T G A C T G A C G T C G T A A C T G A G T C C G T A C G T A A G T C A C G T
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CTCGGTAGCAAC--
--SCCTAGCAACAG
A G T C A C G T A G T C A C T G A C T G A C G T C G T A A C T G A G T C C G T A C G T A A G T C A C G T A C G T
A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G