Information for 13-CTGGTCACCC (Motif 17)

A G T C A C G T A C T G A C T G A C G T A G T C C G T A A G T C A G T C A G T C
Reverse Opposite:
A C T G A C T G A C T G A C G T A C T G C G T A A G T C A G T C C G T A A C T G
p-value:1e-2
log p-value:-6.412e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif153.5
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets134.0 +/- 0.0bp
Average Position of motif in Background103.9 +/- 70.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5/MA0014.3/Jaspar

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:CTGGTCACCC--
NNGGTCACGCTC
A G T C A C G T A C T G A C T G A C G T A G T C C G T A A G T C A G T C A G T C A C G T A C G T
T C A G C A T G T C A G A T C G G A C T A T G C C G T A A G T C T C A G A T G C G A C T A G T C

PB0153.1_Nr2f2_2/Jaspar

Match Rank:2
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CTGGTCACCC-
CGCGCCGGGTCACGTA
A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C T G A C G T A G T C C G T A A G T C A G T C A G T C A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CTGGTCACCC
-AGGTCA---
A G T C A C G T A C T G A C T G A C G T A G T C C G T A A G T C A G T C A G T C
A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T

SREBF1/MA0595.1/Jaspar

Match Rank:4
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CTGGTCACCC---
---ATCACCCCAC
A G T C A C G T A C T G A C T G A C G T A G T C C G T A A G T C A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T T C G A A C G T A G T C C G T A A T G C T A G C A G T C T A G C C G T A A G T C

Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer

Match Rank:5
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CTGGTCACCC
CYWSTGGTCARA-
A C G T A C G T A C G T A G T C A C G T A C T G A C T G A C G T A G T C C G T A A G T C A G T C A G T C
G A T C G A C T C G T A T A G C C G A T A C T G A C T G G A C T T G A C C G T A T C A G C T G A A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CTGGTCACCC
WDNCTGGGCA---
A C G T A C G T A C G T A G T C A C G T A C T G A C T G A C G T A G T C C G T A A G T C A G T C A G T C
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CTGGTCACCC---
---ATCACCCCAT
A G T C A C G T A C T G A C T G A C G T A G T C C G T A A G T C A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T T C G A G C A T A T G C C T G A A T G C T A G C A G T C G T A C T C G A A G C T

SREBF2/MA0596.1/Jaspar

Match Rank:8
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CTGGTCACCC---
---ATCACCCCAT
A G T C A C G T A C T G A C T G A C G T A G T C C G T A A G T C A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C T G A A C G T A G T C C G T A A T G C T A G C A G T C A T G C C G T A A G C T

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CTGGTCACCC---
-CNGTCACGCCAC
A G T C A C G T A C T G A C T G A C G T A G T C C G T A A G T C A G T C A G T C A C G T A C G T A C G T
A C G T G T A C C T A G T C A G A G C T T A G C C G T A A T G C T A C G A G T C G T A C G T C A A G T C

NR2C1/MA1535.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTGGTCACCC
CGAGGTCAC--
A C G T A G T C A C G T A C T G A C T G A C G T A G T C C G T A A G T C A G T C A G T C
G T A C C T A G T C G A A C T G A C T G A C G T A T G C C T G A G A T C A C G T A C G T