Information for 7-GAATGAAAATTG (Motif 9)

A C T G C G T A C G T A A C G T A C T G C G T A C G T A C G T A C G T A A C G T A C G T A C T G
Reverse Opposite:
A G T C C G T A C G T A A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T A G T C
p-value:1e-4
log p-value:-9.944e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets94.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0169.1_Sox15_2/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GAATGAAAATTG-
TTGAATGAAATTCGA
A C G T A C G T A C T G C G T A C G T A A C G T A C T G C G T A C G T A C G T A C G T A A C G T A C G T A C T G A C G T
A C G T A C G T T C A G C T G A G T C A A G C T A C T G C G T A G T C A C T G A C A G T G A C T G A T C T A C G T C G A

POU5F1/MA1115.1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GAATGAAAATTG
ATATGCAAATT-
A C T G C G T A C G T A A C G T A C T G C G T A C G T A C G T A C G T A A C G T A C G T A C T G
C G T A G C A T T C G A G A C T C T A G A G T C G C T A C T G A G C T A G C A T C A G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GAATGAAAATTG
--ATGAATATTC
A C T G C G T A C G T A A C G T A C T G C G T A C G T A C G T A C G T A A C G T A C G T A C T G
A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

POU2F2/MA0507.1/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GAATGAAAATTG-
ATATGCAAATNNN
A C T G C G T A C G T A A C G T A C T G C G T A C G T A C G T A C G T A A C G T A C G T A C T G A C G T
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GAATGAAAATTG-
-TATGCWAATBAV
A C T G C G T A C G T A A C G T A C T G C G T A C G T A C G T A C G T A A C G T A C G T A C T G A C G T
A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

PH0144.1_Pou2f2/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GAATGAAAATTG--
TTGTATGCAAATTAGA
A C G T A C G T A C T G C G T A C G T A A C G T A C T G C G T A C G T A C G T A C G T A A C G T A C G T A C T G A C G T A C G T
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GAATGAAAATTG-
-WATGCAAATGAG
A C T G C G T A C G T A A C G T A C T G C G T A C G T A C G T A C G T A A C G T A C G T A C T G A C G T
A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GAATGAAAATTG
GGYAATGAAA----
A C G T A C G T A C T G C G T A C G T A A C G T A C T G C G T A C G T A C G T A C G T A A C G T A C G T A C T G
C T A G T A C G G A C T T G C A T G C A C G A T T A C G C T G A T C G A C T G A A C G T A C G T A C G T A C G T

PH0145.1_Pou2f3/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GAATGAAAATTG--
TTGTATGCAAATTAGA
A C G T A C G T A C T G C G T A C G T A A C G T A C T G C G T A C G T A C G T A C G T A A C G T A C G T A C T G A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

POU5F1B/MA0792.1/Jaspar

Match Rank:10
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GAATGAAAATTG
-TATGCAAAT--
A C T G C G T A C G T A A C G T A C T G C G T A C G T A C G T A C G T A A C G T A C G T A C T G
A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T