Information for 7-GAAATTCACT (Motif 12)

A C T G C G T A C G T A C G T A A C G T A C G T A G T C C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G A C G T A C T G C G T A C G T A A C G T A C G T A C G T A G T C
p-value:1e-3
log p-value:-8.670e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif16.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets35.0 +/- 0.0bp
Average Position of motif in Background95.6 +/- 69.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GAAATTCACT
GGAAATTCCC-
A C G T A C T G C G T A C G T A C G T A A C G T A C G T A G T C C G T A A G T C A C G T
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T

PB0068.1_Sox1_1/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GAAATTCACT----
AATCAATTCAATAATT
A C G T A C G T A C T G C G T A C G T A C G T A A C G T A C G T A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GAAATTCACT
GGAAATTCCC-
A C G T A C T G C G T A C G T A C G T A A C G T A C G T A G T C C G T A A G T C A C G T
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T

PB0171.1_Sox18_2/Jaspar

Match Rank:4
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----GAAATTCACT--
NNNNTGAATTCANNNC
A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G T A A C G T A C G T A G T C C G T A A G T C A C G T A C G T A C G T
A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GAAATTCACT--
SSAATCCACANN
A C T G C G T A C G T A C G T A A C G T A C G T A G T C C G T A A G T C A C G T A C G T A C G T
A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GAAATTCACT---
-ACTTTCACTTTC
A C T G C G T A C G T A C G T A A C G T A C G T A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T T C G A T G A C G C A T A G C T C A G T G A T C G C T A G A T C G A C T A C G T G C A T A G T C

MF0003.1_REL_class/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GAAATTCACT
GGAAATCCCC-
A C G T A C T G C G T A C G T A C G T A A C G T A C G T A G T C C G T A A G T C A C G T
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T

FOXH1/MA0479.1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GAAATTCACT
TCCAATCCACA
A C G T A C T G C G T A C G T A C G T A A C G T A C G T A G T C C G T A A G T C A C G T
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GAAATTCACT
GGGAAATCCCCN
A C G T A C G T A C T G C G T A C G T A C G T A A C G T A C G T A G T C C G T A A G T C A C G T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

PB0005.1_Bbx_1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GAAATTCACT------
-TAATTCAATGAAGTG
A C T G C G T A C G T A C G T A A C G T A C G T A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T G C T A C T G A C G A T C G A T T G A C G C T A C G T A C G A T A C T G C G T A G C T A A T C G G C A T C T A G