Information for 5-CAGCAGGCGCCT (Motif 6)

A G T C C G T A A C T G A G T C C G T A A C T G A C T G A G T C A C T G A G T C A G T C A C G T
Reverse Opposite:
C G T A A C T G A C T G A G T C A C T G A G T C A G T C A C G T A C T G A G T C A C G T A C T G
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets118.0 +/- 0.0bp
Average Position of motif in Background160.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:1
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--CAGCAGGCGCCT
CACAGCAGGGG---
A C G T A C G T A G T C C G T A A C T G A G T C C G T A A C T G A C T G A G T C A C T G A G T C A G T C A C G T
T A G C T C G A A G T C T G C A T A C G A G T C T C G A A T C G A C T G T A C G T C A G A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGGCGCCT
DCHCAGCAGGRGGCC
A C G T A C G T A C G T A G T C C G T A A C T G A G T C C G T A A C T G A C T G A G T C A C T G A G T C A G T C A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Zic2/MA1629.1/Jaspar

Match Rank:3
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----CAGCAGGCGCCT
CTCACAGCAGGGGG--
A C G T A C G T A C G T A C G T A G T C C G T A A C T G A G T C C G T A A C T G A C T G A G T C A C T G A G T C A G T C A C G T
T G A C C A G T T G A C G C T A T A G C G T C A T A C G A G T C C T G A C A T G A T C G C T A G T C A G T C A G A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CAGCAGGCGCCT
CACAGCAGGGGG--
A C G T A C G T A G T C C G T A A C T G A G T C C G T A A C T G A C T G A G T C A C T G A G T C A G T C A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGGCGCCT
DCTCAGCAGG-----
A C G T A C G T A C G T A G T C C G T A A C T G A G T C C G T A A C T G A C T G A G T C A C T G A G T C A G T C A C G T
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGGCGCCT
CCACACAGCAGGAGA--
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A G T C C G T A A C T G A C T G A G T C A C T G A G T C A G T C A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGGCGCCT
CCACACAGCAGGAGA--
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A G T C C G T A A C T G A C T G A G T C A C T G A G T C A G T C A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T

TCF12(var.2)/MA1648.1/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CAGCAGGCGCCT
NNGCAGGTGNN-
A G T C C G T A A C T G A G T C C G T A A C T G A C T G A G T C A C T G A G T C A G T C A C G T
T A G C T C A G T C A G A G T C T C G A A T C G T A C G A G C T T C A G A T G C A T C G A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CAGCAGGCGCCT
SDGCAGGTGCNS
A G T C C G T A A C T G A G T C C G T A A C T G A C T G A G T C A C T G A G T C A G T C A C G T
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer

Match Rank:10
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CAGCAGGCGCCT
CHCAGCRGGRGG--
A C G T A C G T A G T C C G T A A C T G A G T C C G T A A C T G A C T G A G T C A C T G A G T C A G T C A C G T
T G A C G T C A A G T C G C T A C T A G A G T C C T G A C A T G A C T G C T A G T A C G T C A G A C G T A C G T