Information for 19-GTCAGTCAAAGC (Motif 19)

A C T G A C G T A G T C C G T A A C T G A C G T A G T C C G T A C G T A C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T A C G T A C G T A C T G C G T A A G T C A C G T A C T G C G T A A G T C
p-value:1e-4
log p-value:-9.884e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets190.0 +/- 0.0bp
Average Position of motif in Background24.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:1
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---GTCAGTCAAAGC
SCTGTCAVTCAV---
A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C T G A C G T A G T C C G T A C G T A C G T A A C T G A G T C
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GTCAGTCAAAGC
NCTGTCAATCAN---
A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C T G A C G T A G T C C G T A C G T A C G T A A C T G A G T C
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T A C G T

PKNOX1/MA0782.2/Jaspar

Match Rank:3
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----GTCAGTCAAAGC
NNGCTGTCACTCANN--
A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C T G A C G T A G T C C G T A C G T A C G T A A C T G A G T C
G A C T T C G A A T C G T G A C G C A T C T A G G A C T T A G C G C T A T G A C G A C T A G T C G C T A C G T A G C T A A C G T A C G T

PBX3/MA1114.1/Jaspar

Match Rank:4
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------GTCAGTCAAAGC
NNNCCTGTCACTCANNN-
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C T G A C G T A G T C C G T A C G T A C G T A A C T G A G T C
T A G C A G T C T A C G A T G C T G A C G A C T A T C G G A C T A T G C G T C A T G A C G C A T A G T C G C T A T G A C T G A C A T G C A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:5
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GTCAGTCAAAGC
GSCTGTCACTCA----
A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C T G A C G T A G T C C G T A C G T A C G T A A C T G A G T C
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T A C G T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GTCAGTCAAAGC
CCATCAATCAAA--
A C G T A C G T A C T G A C G T A G T C C G T A A C T G A C G T A G T C C G T A C G T A C G T A A C T G A G T C
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A A C G T A C G T

TCF7/MA0769.2/Jaspar

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GTCAGTCAAAGC-
--ANATCAAAGNN
A C T G A C G T A G T C C G T A A C T G A C G T A G T C C G T A C G T A C G T A A C T G A G T C A C G T
A C G T A C G T C G T A A T G C G C T A G C A T T G A C G C T A G C T A C G T A A C T G T C A G T G C A

NKX2-5/MA0063.2/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GTCAGTCAAAGC
ACCACTCAAAA-
A C T G A C G T A G T C C G T A A C T G A C G T A G T C C G T A C G T A C G T A A C T G A G T C
T C G A T G A C G A T C C T G A G A T C G C A T G A T C C G T A G C T A T C G A G C T A A C G T

BATF3/MA0835.2/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GTCAGTCAAAGC
NATGAGTCATN--
A C G T A C T G A C G T A G T C C G T A A C T G A C G T A G T C C G T A C G T A C G T A A C T G A G T C
C G A T G C T A G C A T C A T G G C T A A T C G C G A T G T A C C G T A C A G T G C T A A C G T A C G T

BATF::JUN/MA0462.2/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GTCAGTCAAAGC
NATGAGTCATN--
A C G T A C T G A C G T A G T C C G T A A C T G A C G T A G T C C G T A C G T A C G T A A C T G A G T C
C G A T G T C A G C A T C A T G G C T A A T C G G A C T G T A C C G T A A C G T G C T A A C G T A C G T