Information for 3-AGGCGTGAAAAA (Motif 5)

C G T A A C T G A C T G A G T C A C T G A C G T A C T G C G T A C G T A C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C A C T G A G T C A G T C A C G T
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets75.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0013.1_Eomes_1/Jaspar

Match Rank:1
Score:0.77
Offset:-4
Orientation:forward strand
Alignment:----AGGCGTGAAAAA-
GAAAAGGTGTGAAAATT
A C G T A C G T A C G T A C G T C G T A A C T G A C T G A G T C A C T G A C G T A C T G C G T A C G T A C G T A C G T A C G T A A C G T
A C G T T C G A G C T A C T G A C T G A C T A G A C T G A G C T C T A G G A C T A C T G C T G A G T C A G T C A G C T A G A C T G A C T

EOMES/MA0800.1/Jaspar

Match Rank:2
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-AGGCGTGAAAAA
AAGGTGTGAAAAT
A C G T C G T A A C T G A C T G A G T C A C T G A C G T A C T G C G T A C G T A C G T A C G T A C G T A
C T G A C T G A C T A G A C T G A G C T T C A G G A C T A C T G T C G A G C T A G T C A C G T A G A C T

TBR1/MA0802.1/Jaspar

Match Rank:3
Score:0.75
Offset:0
Orientation:forward strand
Alignment:AGGCGTGAAAAA
AGGTGTGAAA--
C G T A A C T G A C T G A G T C A C T G A C G T A C T G C G T A C G T A C G T A C G T A C G T A
C T G A C T A G A T C G A G C T A T C G G A C T A C T G C T G A G C T A G C T A A C G T A C G T

Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer

Match Rank:4
Score:0.74
Offset:0
Orientation:forward strand
Alignment:AGGCGTGAAAAA
AGGTGTGAAA--
C G T A A C T G A C T G A G T C A C T G A C G T A C T G C G T A C G T A C G T A C G T A C G T A
C T G A C T A G A C T G G C A T C T A G G C A T A T C G C T G A C G T A G T C A A C G T A C G T

TBX18/MA1565.1/Jaspar

Match Rank:5
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--AGGCGTGAAAAA
GGAGGTGTGAAA--
A C G T A C G T C G T A A C T G A C T G A G T C A C T G A C G T A C T G C G T A C G T A C G T A C G T A C G T A
C T A G C T A G T C G A T C A G C T A G G A C T T C A G C A G T T A C G C G T A C T G A T C G A A C G T A C G T

TBX2/MA0688.1/Jaspar

Match Rank:6
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-AGGCGTGAAAAA
AAGGTGTGAAA--
A C G T C G T A A C T G A C T G A G T C A C T G A C G T A C T G C G T A C G T A C G T A C G T A C G T A
C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A A C G T A C G T

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:7
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:AGGCGTGAAAAA
TGGCGGGAAAHB
C G T A A C T G A C T G A G T C A C T G A C G T A C T G C G T A C G T A C G T A C G T A C G T A
C G A T T A C G A T C G G T A C A C T G A T C G A C T G C T G A C T G A T G C A G C T A A T C G

TBX21/MA0690.1/Jaspar

Match Rank:8
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-AGGCGTGAAAAA
AAGGTGTGAA---
A C G T C G T A A C T G A C T G A G T C A C T G A C G T A C T G C G T A C G T A C G T A C G T A C G T A
C T G A C T G A C T A G A C T G A G C T C A T G G A C T A C T G C T G A G C T A A C G T A C G T A C G T

TBX20/MA0689.1/Jaspar

Match Rank:9
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AGGCGTGAAAAA
TAGGTGTGAAG--
A C G T C G T A A C T G A C T G A G T C A C T G A C G T A C T G C G T A C G T A C G T A C G T A C G T A
C G A T C T G A T C A G A C T G A C G T A C T G C A G T C A T G C G T A C G T A T C A G A C G T A C G T

E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.69
Offset:1
Orientation:forward strand
Alignment:AGGCGTGAAAAA
-GGCGGGAAAH-
C G T A A C T G A C T G A G T C A C T G A C G T A C T G C G T A C G T A C G T A C G T A C G T A
A C G T T A C G T A C G G T A C A T C G T A C G T A C G G T C A C T G A C G T A G A C T A C G T