Information for 7-AGAGTTTTCTGA (Motif 8)

C G T A A C T G C G T A A C T G A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A A C T G C G T A C G T A C G T A C G T A A G T C A C G T A G T C A C G T
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets96.0 +/- 0.0bp
Average Position of motif in Background63.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:1
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:AGAGTTTTCTGA-
---NTTTTATGAC
C G T A A C T G C G T A A C T G A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G T A A C G T
A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

HOXD10/MA1506.1/Jaspar

Match Rank:2
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:AGAGTTTTCTGA--
---NTTTTACGACC
C G T A A C T G C G T A A C T G A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G T A A C G T A C G T
A C G T A C G T A C G T C T A G C G A T C A G T A C G T G C A T G T C A A G T C A C T G T C G A A G T C A G T C

Hoxa11/MA0911.1/Jaspar

Match Rank:3
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:AGAGTTTTCTGA--
--ANTTTTACGACC
C G T A A C T G C G T A A C T G A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G T A A C G T A C G T
A C G T A C G T G C T A C G T A C G A T C G A T G C A T G C A T G C T A G A T C C T A G T C G A A G T C G A T C

HOXC9/MA0485.2/Jaspar

Match Rank:4
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:AGAGTTTTCTGA-
---NTTTTACGAC
C G T A A C T G C G T A A C T G A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G T A A C G T
A C G T A C G T A C G T C T G A C G A T A C G T A C G T C G A T G T C A A G T C A C T G C T G A A G T C

HOXC10/MA0905.1/Jaspar

Match Rank:5
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:AGAGTTTTCTGA-
---NTTTTACGAC
C G T A A C T G C G T A A C T G A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G T A A C G T
A C G T A C G T A C G T C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C

CDX1/MA0878.2/Jaspar

Match Rank:6
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:AGAGTTTTCTGA--
---GTTTTATGGCC
C G T A A C T G C G T A A C T G A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G T A A C G T A C G T
A C G T A C G T A C G T T C A G C A G T A G C T A C G T A G C T C G T A A C G T A C T G T C A G G A T C G T A C

PH0064.1_Hoxb9/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:AGAGTTTTCTGA----
NGANTTTTATGGCTCN
C G T A A C T G C G T A A C T G A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G T A A C G T A C G T A C G T A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

HOXB9/MA1503.1/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:AGAGTTTTCTGA-
---NTTTTACGAC
C G T A A C T G C G T A A C T G A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G T A A C G T
A C G T A C G T A C G T C T G A C G A T C A G T A C G T C G A T G T C A A G T C A C T G C T G A A G T C

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:AGAGTTTTCTGA-
---ATTTCCTGTN
C G T A A C T G C G T A A C T G A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G T A A C G T
A C G T A C G T A C G T C T G A A G C T A C G T A C G T A G T C A G T C A C G T A C T G G A C T A C G T

CDX4/MA1473.1/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:AGAGTTTTCTGA--
---GTTTTATTGCC
C G T A A C T G C G T A A C T G A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G T A A C G T A C G T
A C G T A C G T A C G T T C A G C A G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G T C G T A C