Information for 25-AAGACAAAGGCA (Motif 21)

C G T A C G T A A C T G C G T A A G T C C G T A C G T A C G T A A C T G A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C G T
p-value:1e-4
log p-value:-1.023e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets115.0 +/- 0.0bp
Average Position of motif in Background160.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:AAGACAAAGGCA
AAAACAAAGG--
C G T A C G T A A C T G C G T A A G T C C G T A C G T A C G T A A C T G A C T G A G T C C G T A
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:2
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:AAGACAAAGGCA
AAAACAATGG--
C G T A C G T A A C T G C G T A A G T C C G T A C G T A C G T A A C T G A C T G A G T C C G T A
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:3
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---AAGACAAAGGCA-
AAACAGACAAAGGAAT
A C G T A C G T A C G T C G T A C G T A A C T G C G T A A G T C C G T A C G T A C G T A A C T G A C T G A G T C C G T A A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

SOX10/MA0442.2/Jaspar

Match Rank:4
Score:0.72
Offset:0
Orientation:forward strand
Alignment:AAGACAAAGGCA
AAAACAAAGAA-
C G T A C G T A A C T G C G T A A G T C C G T A C G T A C G T A A C T G A C T G A G T C C G T A
C T G A C T G A T G C A G C T A A G T C C G T A G C T A G C T A A C T G T C G A T G C A A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:AAGACAAAGGCA
--RACAAWGG--
C G T A C G T A A C T G C G T A A G T C C G T A C G T A C G T A A C T G A C T G A G T C C G T A
A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer

Match Rank:6
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-AAGACAAAGGCA
BMRVACAAWGGV-
A C G T C G T A C G T A A C T G C G T A A G T C C G T A C G T A C G T A A C T G A C T G A G T C C G T A
A T G C T G A C C T G A T A C G C G T A A G T C C G T A C G T A C G T A C T A G T C A G T G C A A C G T

SOX4/MA0867.2/Jaspar

Match Rank:7
Score:0.69
Offset:1
Orientation:forward strand
Alignment:AAGACAAAGGCA
-GAACAAAGGG-
C G T A C G T A A C T G C G T A A G T C C G T A C G T A C G T A A C T G A C T G A G T C C G T A
A C G T C T A G T C G A C G T A A T G C T C G A T C G A G C T A C T A G T C A G T C A G A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:8
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:AAGACAAAGGCA
VRRACAAWGG--
C G T A C G T A A C T G C G T A A G T C C G T A C G T A C G T A A C T G A C T G A G T C C G T A
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:9
Score:0.68
Offset:1
Orientation:forward strand
Alignment:AAGACAAAGGCA
-RAACAATGGN-
C G T A C G T A A C T G C G T A A G T C C G T A C G T A C G T A A C T G A C T G A G T C C G T A
A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:10
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:AAGACAAAGGCA
GGAACAAAGR--
C G T A C G T A A C T G C G T A A G T C C G T A C G T A C G T A A C T G A C T G A G T C C G T A
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T