Information for 17-ACTAGCCTTC (Motif 35)

C G T A A G T C A C G T C G T A A C T G A G T C A G T C A C G T A C G T A G T C
Reverse Opposite:
A C T G C G T A C G T A A C T G A C T G A G T C A C G T C G T A A C T G A C G T
p-value:1e-2
log p-value:-6.868e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif10.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets34.0 +/- 0.0bp
Average Position of motif in Background105.0 +/- 104.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--ACTAGCCTTC
NNACTTGCCTT-
A C G T A C G T C G T A A G T C A C G T C G T A A C T G A G T C A G T C A C G T A C G T A G T C
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.59
Offset:5
Orientation:forward strand
Alignment:ACTAGCCTTC-
-----GCTTCC
C G T A A G T C A C G T C G T A A C T G A G T C A G T C A C G T A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C

PH0040.1_Hmbox1/Jaspar

Match Rank:3
Score:0.57
Offset:-7
Orientation:reverse strand
Alignment:-------ACTAGCCTTC
GANGTTAACTAGTTTNN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T C G T A A C T G A G T C A G T C A C G T A C G T A G T C
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--ACTAGCCTTC
AAGATATCCTT-
A C G T A C G T C G T A A G T C A C G T C G T A A C T G A G T C A G T C A C G T A C G T A G T C
G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T A C G T

PH0168.1_Hnf1b/Jaspar

Match Rank:5
Score:0.55
Offset:-8
Orientation:forward strand
Alignment:--------ACTAGCCTTC
AGCTGTTAACTAGCCGT-
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T C G T A A C T G A G T C A G T C A C G T A C G T A G T C
C G T A A C T G A G T C A C G T C T A G G C A T G A C T C G T A G C T A A G T C A G C T C G T A T C A G A G T C G A T C A T C G A G C T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:ACTAGCCTTC
-BCAGACWA-
C G T A A G T C A C G T C G T A A C T G A G T C A G T C A C G T A C G T A G T C
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:ACTAGCCTTC---
-GTGACCTTGRVN
C G T A A G T C A C G T C G T A A C T G A G T C A G T C A C G T A C G T A G T C A C G T A C G T A C G T
A C G T C A T G G A C T T A C G G T C A G T A C G A T C G A C T A G C T A T C G T C G A T A C G T A G C

NR5A1/MA1540.1/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:ACTAGCCTTC--
-NTGACCTTGAN
C G T A A G T C A C G T C G T A A C T G A G T C A G T C A C G T A C G T A G T C A C G T A C G T
A C G T C T A G G A C T T C A G C T G A A G T C G T A C G C A T G A C T T A C G C T G A T G A C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:ACTAGCCTTC
BNTGDCCTTG
C G T A A G T C A C G T C G T A A C T G A G T C A G T C A C G T A C G T A G T C
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:forward strand
Alignment:ACTAGCCTTC
--CAGCC---
C G T A A G T C A C G T C G T A A C T G A G T C A G T C A C G T A C G T A G T C
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T