Information for 3-ACGAATTTGG (Motif 4)

C G T A A G T C A C T G C G T A C G T A A C G T A C G T A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A C G T A C G T A A C G T A C G T A G T C A C T G A C G T
p-value:1e-4
log p-value:-1.023e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.0 +/- 0.0bp
Average Position of motif in Background130.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0136.1_IRC900814_2/Jaspar

Match Rank:1
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----ACGAATTTGG--
TTTTACGACTTTCCAT
A C G T A C G T A C G T A C G T C G T A A G T C A C T G C G T A C G T A A C G T A C G T A C G T A C T G A C T G A C G T A C G T
C G A T A G C T G C A T A G C T T C G A G A T C C T A G C T G A G T A C C A G T A G C T G A C T G A T C T G A C T C G A G A C T

PB0171.1_Sox18_2/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---ACGAATTTGG---
NNNNTGAATTCANNNC
A C G T A C G T A C G T C G T A A G T C A C T G C G T A C G T A A C G T A C G T A C G T A C T G A C T G A C G T A C G T A C G T
A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C

PH0089.1_Isx/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---ACGAATTTGG---
ACNNCTAATTAGNNNN
A C G T A C G T A C G T C G T A A G T C A C T G C G T A C G T A A C G T A C G T A C G T A C T G A C T G A C G T A C G T A C G T
G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T

PAX4/MA0068.2/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:ACGAATTTGG
-CTAATTAG-
C G T A A G T C A C T G C G T A C G T A A C G T A C G T A C G T A C T G A C T G
A C G T A G T C C A G T C G T A G T C A A C G T C G A T G T C A T C A G A C G T

PH0033.1_Gbx1/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----ACGAATTTGG---
TGCCACTAATTAGTGTA
A C G T A C G T A C G T A C G T C G T A A G T C A C T G C G T A C G T A A C G T A C G T A C G T A C T G A C T G A C G T A C G T A C G T
G C A T C T A G A T G C T G A C T C G A G T A C G A C T G T C A C T G A A G C T A C G T C T G A A C T G A C G T A C T G A C G T G C T A

PB0170.1_Sox17_2/Jaspar

Match Rank:6
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----ACGAATTTGG--
NTTNTATGAATGTGNNC
A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C T G C G T A C G T A A C G T A C G T A C G T A C T G A C T G A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

PH0092.1_Lhx2/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---ACGAATTTGG----
TAAACTAATTAGTGAAC
A C G T A C G T A C G T C G T A A G T C A C T G C G T A C G T A A C G T A C G T A C G T A C T G A C T G A C G T A C G T A C G T A C G T
C G A T T G C A G T C A T C G A G A T C G A C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C A T G G T C A G T C A A T G C

PH0034.1_Gbx2/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---ACGAATTTGG----
AGCGCTAATTAGCGATT
A C G T A C G T A C G T C G T A A G T C A C T G C G T A C G T A A C G T A C G T A C G T A C T G A C T G A C G T A C G T A C G T A C G T
C G T A T A C G T G A C T C A G A T G C A G C T G T C A G C T A C A G T A C G T C T G A T A C G A G T C T A C G C T G A A C G T C A G T

PH0107.1_Msx2/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----ACGAATTTGG---
GAAGACCAATTAGCGCT
A C G T A C G T A C G T A C G T C G T A A G T C A C T G C G T A C G T A A C G T A C G T A C G T A C T G A C T G A C G T A C G T A C G T
T C A G T G C A C T G A T A C G C T G A A T G C G A T C C G T A G T C A C G A T G A C T C T G A C A T G G A T C C A T G G A T C A G C T

PH0127.1_Nobox/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---ACGAATTTGG----
CGCGCTAATTAGGTATC
A C G T A C G T A C G T C G T A A G T C A C T G C G T A C G T A A C G T A C G T A C G T A C T G A C T G A C G T A C G T A C G T A C G T
T A G C A T C G A T G C T C A G A G T C G A C T C T G A C G T A G C A T A G C T C T G A T C A G A C T G G C A T C G T A G A C T A T G C