Information for 13-AGGGAATTCTCC (Motif 13)

C G T A A C T G A C T G A C T G C G T A C G T A A C G T A C G T A G T C A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A A C T G C G T A C G T A A C G T A C G T A G T C A G T C A G T C A C G T
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFKB2/MA0778.1/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:AGGGAATTCTCC-
AGGGGATTCCCCT
C G T A A C T G A C T G A C T G C G T A C G T A A C G T A C G T A G T C A C G T A G T C A G T C A C G T
T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T

NFKB1/MA0105.4/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:forward strand
Alignment:AGGGAATTCTCC-
AGGGGAATCCCCT
C G T A A C T G A C T G A C T G C G T A C G T A A C G T A C G T A G T C A C G T A G T C A G T C A C G T
T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:3
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:AGGGAATTCTCC-
-GGGAAATCCCCN
C G T A A C T G A C T G A C T G C G T A C G T A A C G T A C G T A G T C A C G T A G T C A G T C A C G T
A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:4
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:AGGGAATTCTCC-
-GGGGATTCCCCC
C G T A A C T G A C T G A C T G C G T A C G T A A C G T A C G T A G T C A C G T A G T C A G T C A C G T
A C G T A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

RELB/MA1117.1/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AGGGAATTCTCC
NNGGGGAATNC---
A C G T A C G T C G T A A C T G A C T G A C T G C G T A C G T A A C G T A C G T A G T C A C G T A G T C A G T C
A T G C G T A C A T C G C A T G C A T G C T A G C T G A G C T A G C A T G A C T G A T C A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:6
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AGGGAATTCTCC
-GGGAATTTCC-
C G T A A C T G A C T G A C T G C G T A C G T A A C G T A C G T A G T C A C G T A G T C A G T C
A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T

REL/MA0101.1/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AGGGAATTCTCC
--GGAAANCCCC
C G T A A C T G A C T G A C T G C G T A C G T A A C G T A C G T A G T C A C G T A G T C A G T C
A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

MF0003.1_REL_class/Jaspar

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AGGGAATTCTCC
--GGAAATCCCC
C G T A A C T G A C T G A C T G C G T A C G T A A C G T A C G T A G T C A C G T A G T C A G T C
A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

RELA/MA0107.1/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AGGGAATTCTCC
-GGAAATTCCC-
C G T A A C T G A C T G A C T G C G T A C G T A A C G T A C G T A G T C A C G T A G T C A G T C
A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGGGAATTCTCC
NCTGGAATGC---
A C G T C G T A A C T G A C T G A C T G C G T A C G T A A C G T A C G T A G T C A C G T A G T C A G T C
G A T C G T A C C G A T A C T G A C T G C G T A C G T A A C G T A C T G G A T C A C G T A C G T A C G T