Information for 3-TTAATGCGCA (Motif 3)

A C G T A C G T C G T A C G T A A C G T A C T G A G T C A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C A C T G A G T C C G T A A C G T A C G T C G T A C G T A
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets139.0 +/- 0.0bp
Average Position of motif in Background175.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX6-3/MA1530.1/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TTAATGCGCA
TTTAATGAN--
A C G T A C G T A C G T C G T A C G T A A C G T A C T G A G T C A C T G A G T C C G T A
C G A T C G A T A G C T C T G A C G T A A C G T T C A G C T G A A T C G A C G T A C G T

POU6F2/MA0793.1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TTAATGCGCA
NTAATGAGCT
A C G T A C G T C G T A C G T A A C G T A C T G A G T C A C T G A G T C C G T A
C G T A C G A T T G C A C T G A C A G T C A T G G T C A C T A G A T G C G A C T

GSC2/MA0891.1/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TTAATGCGCA
CCTAATCCGC-
A C G T A C G T A C G T C G T A C G T A A C G T A C T G A G T C A C T G A G T C C G T A
T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C A C G T

POU6F1(var.2)/MA1549.1/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TTAATGCGCA
ATAATGAGGT
A C G T A C G T C G T A C G T A A C G T A C T G A G T C A C T G A G T C C G T A
C T G A G A C T T C G A C G T A A C G T A C T G G C T A A C T G T A C G C G A T

PH0015.1_Crx/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TTAATGCGCA---
AGGCTAATCCCCAANG
A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C T G A G T C A C T G A G T C C G T A A C G T A C G T A C G T
G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G

PH0151.1_Pou6f1_1/Jaspar

Match Rank:6
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----TTAATGCGCA---
GACGATAATGAGCTTGC
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C T G A G T C A C T G A G T C C G T A A C G T A C G T A C G T
T A C G G C T A T G A C T A C G G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G A T C G G C A T C A G T C T A G G T A C

Arid3a/MA0151.1/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TTAATGCGCA
TTTAAT-----
A C G T A C G T A C G T C G T A C G T A A C G T A C T G A G T C A C T G A G T C C G T A
G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PH0129.1_Otx1/Jaspar

Match Rank:8
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATGCGCA--
NNNAATTAATCCCCNCN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C T G A G T C A C T G A G T C C G T A A C G T A C G T
T C G A C G A T C G T A C G T A C T G A G A C T C G A T C G T A C G T A A C G T G A T C A G T C A T G C A G T C G C A T G T A C G A C T

GSC/MA0648.1/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TTAATGCGCA
GCTAATCCCC-
A C G T A C G T A C G T C G T A C G T A A C G T A C T G A G T C A C T G A G T C C G T A
T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C A C G T

OTX1/MA0711.1/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TTAATGCGCA
TTAATCCG--
A C G T A C G T C G T A C G T A A C G T A C T G A G T C A C T G A G T C C G T A
G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G A C G T A C G T