Information for 12-GGTAATTCCC (Motif 29)

A C T G A C T G A C G T C G T A C G T A A C G T A C G T A G T C A G T C A G T C
Reverse Opposite:
A C T G A C T G A C T G C G T A C G T A A C G T A C G T C G T A A G T C A G T C
p-value:1e-3
log p-value:-7.345e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif18.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets78.0 +/- 0.0bp
Average Position of motif in Background105.9 +/- 64.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.85
Offset:0
Orientation:forward strand
Alignment:GGTAATTCCC
GGAAATTCCC
A C T G A C T G A C G T C G T A C G T A A C G T A C G T A G T C A G T C A G T C
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:GGTAATTCCC
GGAAATTCCC
A C T G A C T G A C G T C G T A C G T A A C G T A C G T A G T C A G T C A G T C
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:GGTAATTCCC
GGAAATCCCC
A C T G A C T G A C G T C G T A C G T A A C G T A C G T A G T C A G T C A G T C
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--GGTAATTCCC
NGGGGATTTCCC
A C G T A C G T A C T G A C T G A C G T C G T A C G T A A C G T A C G T A G T C A G T C A G T C
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

PH0053.1_Hoxa6/Jaspar

Match Rank:5
Score:0.75
Offset:-4
Orientation:reverse strand
Alignment:----GGTAATTCCC--
NTNAGGTAATTACCTT
A C G T A C G T A C G T A C G T A C T G A C T G A C G T C G T A C G T A A C G T A C G T A G T C A G T C A G T C A C G T A C G T
G T C A C G A T C A G T C T G A C T A G A C T G G A C T G T C A G C T A C A G T C A G T C T G A G T A C G A T C C A G T A G C T

HOXB7/MA1501.1/Jaspar

Match Rank:6
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:GGTAATTCCC
GNTAATTACC
A C T G A C T G A C G T C G T A C G T A A C G T A C G T A G T C A G T C A G T C
A T C G A G C T A G C T C G T A G T C A A C G T A C G T T C G A G T A C A G T C

REL/MA0101.1/Jaspar

Match Rank:7
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GGTAATTCCC
GGGGATTTCC-
A C G T A C T G A C T G A C G T C G T A C G T A A C G T A C G T A G T C A G T C A G T C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T

PH0061.1_Hoxb6/Jaspar

Match Rank:8
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----GGTAATTCCC--
TATTGGTAATTACCTT
A C G T A C G T A C G T A C G T A C T G A C T G A C G T C G T A C G T A A C G T A C G T A G T C A G T C A G T C A C G T A C G T
G C A T G C T A C A G T C A G T A T C G A C T G A G C T G T C A C G T A C G A T C A G T C T G A G T A C T A G C C A G T A G C T

RELB/MA1117.1/Jaspar

Match Rank:9
Score:0.71
Offset:2
Orientation:forward strand
Alignment:GGTAATTCCC---
--GAATTCCCCGG
A C T G A C T G A C G T C G T A C G T A A C G T A C G T A G T C A G T C A G T C A C G T A C G T A C G T
A C G T A C G T C T A G C T G A C G T A C G A T G A C T G A T C G T A C G T A C T A G C C A T G T A C G

PH0024.1_Dlx5/Jaspar

Match Rank:10
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GGTAATTCCC----
GGGGTAATTAGCTCTG
A C G T A C G T A C T G A C T G A C G T C G T A C G T A A C G T A C G T A G T C A G T C A G T C A C G T A C G T A C G T A C G T
A T C G A T C G T C A G T C A G G A C T G T C A C G T A G A C T C A G T C T G A T A C G A G T C A C G T T G A C A C G T A T C G