Information for 3-TCGTAAAT (Motif 29)

A C G T A G T C A C T G A C G T C G T A C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T A C G T C G T A A G T C A C T G C G T A
p-value:1e-2
log p-value:-6.127e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif99.2
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets197.0 +/- 0.0bp
Average Position of motif in Background113.7 +/- 75.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD11/MA0908.1/Jaspar

Match Rank:1
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-TCGTAAAT-
GTCGTAAAAA
A C G T A C G T A G T C A C T G A C G T C G T A C G T A C G T A A C G T A C G T
T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A

PH0067.1_Hoxc12/Jaspar

Match Rank:2
Score:0.86
Offset:-5
Orientation:forward strand
Alignment:-----TCGTAAAT----
TTAGGTCGTAAAATTTC
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
G A C T G C A T T C G A T C A G T C A G A G C T G T A C C T A G A C G T G C T A C G T A G C T A G C T A G C A T A G C T C G A T G A T C

HOXC11/MA0651.1/Jaspar

Match Rank:3
Score:0.86
Offset:-2
Orientation:forward strand
Alignment:--TCGTAAAT-
GGTCGTAAAAT
A C G T A C G T A C G T A G T C A C T G A C G T C G T A C G T A C G T A A C G T A C G T
C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T

HOXC9/MA0485.2/Jaspar

Match Rank:4
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-TCGTAAAT-
GTCGTAAAAT
A C G T A C G T A G T C A C T G A C G T C G T A C G T A C G T A A C G T A C G T
T C A G A G C T A G T C C T A G A C G T C G T A C G T A G T C A G C T A G A C T

HOXB9/MA1503.1/Jaspar

Match Rank:5
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-TCGTAAAT-
GTCGTAAAAT
A C G T A C G T A G T C A C T G A C G T C G T A C G T A C G T A A C G T A C G T
T C A G A G C T A G T C T C A G A C G T G C T A C G T A G T C A G C T A G A C T

PH0077.1_Hoxd12/Jaspar

Match Rank:6
Score:0.85
Offset:-5
Orientation:forward strand
Alignment:-----TCGTAAAT----
CAAGGTCGTAAAATCTT
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T

HOXD12/MA0873.1/Jaspar

Match Rank:7
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--TCGTAAAT-
AGTCGTAAAAA
A C G T A C G T A C G T A G T C A C T G A C G T C G T A C G T A C G T A A C G T A C G T
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

Hoxa11/MA0911.1/Jaspar

Match Rank:8
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--TCGTAAAT--
GGTCGTAAAATT
A C G T A C G T A C G T A G T C A C T G A C G T C G T A C G T A C G T A A C G T A C G T A C G T
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T

PH0065.1_Hoxc10/Jaspar

Match Rank:9
Score:0.84
Offset:-5
Orientation:forward strand
Alignment:-----TCGTAAAT---
TAAAGTCGTAAAACGT
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

HOXC12/MA0906.1/Jaspar

Match Rank:10
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--TCGTAAAT-
GGTCGTAAAAA
A C G T A C G T A C G T A G T C A C T G A C G T C G T A C G T A C G T A A C G T A C G T
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A