Information for 12-AAAATTAAGACC (Motif 11)

C G T A C G T A C G T A C G T A A C G T A C G T C G T A C G T A A C T G C G T A A G T C A G T C
Reverse Opposite:
A C T G A C T G A C G T A G T C A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
p-value:1e-4
log p-value:-1.023e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets23.0 +/- 0.0bp
Average Position of motif in Background49.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3b/MA0601.1/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AAAATTAAGACC
NTAATTAATAT-
C G T A C G T A C G T A C G T A A C G T A C G T C G T A C G T A A C T G C G T A A G T C A G T C
A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T A C G T

PH0175.1_Vax2/Jaspar

Match Rank:2
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----AAAATTAAGACC
GTGCACTAATTAAGAC-
A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G T A C G T A A C G T A C G T C G T A C G T A A C T G C G T A A G T C A G T C
A C T G C G A T T A C G A T G C T C G A A G T C G A C T G T C A C G T A C G A T A C G T C G T A T C G A A C T G T C G A T A G C A C G T

Dlx1/MA0879.1/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AAAATTAAGACC
CCTAATTATC---
A C G T C G T A C G T A C G T A C G T A A C G T A C G T C G T A C G T A A C T G C G T A A G T C A G T C
T G A C T G A C G A C T T G C A G C T A C G A T A C G T G C T A A C G T A T G C A C G T A C G T A C G T

PH0124.1_Obox5_1/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AAAATTAAGACC----
NANANTTAATCCCNNNN
A C G T C G T A C G T A C G T A C G T A A C G T A C G T C G T A C G T A A C T G C G T A A G T C A G T C A C G T A C G T A C G T A C G T
C A T G C G T A C T G A C T G A C G A T G C A T C G A T C G T A C G T A C G A T G A T C A G T C A G T C A G C T A G T C G A C T C G T A

PRRX1/MA0716.1/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AAAATTAAGACC
CTAATTAA----
C G T A C G T A C G T A C G T A A C G T A C G T C G T A C G T A A C T G C G T A A G T C A G T C
A G T C G A C T T C G A G T C A A G C T G A C T G C T A T C G A A C G T A C G T A C G T A C G T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:6
Score:0.60
Offset:3
Orientation:forward strand
Alignment:AAAATTAAGACC-
---ATTAACACCT
C G T A C G T A C G T A C G T A A C G T A C G T C G T A C G T A A C T G C G T A A G T C A G T C A C G T
A C G T A C G T A C G T G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T

PH0067.1_Hoxc12/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AAAATTAAGACC---
GNNNTTTTACGACCTNA
A C G T A C G T C G T A C G T A C G T A C G T A A C G T A C G T C G T A C G T A A C T G C G T A A G T C A G T C A C G T A C G T A C G T
C T A G G C T A T C G A C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C A G C T C G T A C T G A

SHOX/MA0630.1/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AAAATTAAGACC
NCAATTAN----
C G T A C G T A C G T A C G T A A C G T A C G T C G T A C G T A A C T G C G T A A G T C A G T C
A G T C G A T C G C T A G T C A A G C T A G C T C G T A C T G A A C G T A C G T A C G T A C G T

PB0177.1_Sox7_2/Jaspar

Match Rank:9
Score:0.59
Offset:-11
Orientation:reverse strand
Alignment:-----------AAAATTAAGACC
NNCNNNCNCANACAATTAGNAC-
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G T A C G T A A C G T A C G T C G T A C G T A A C T G C G T A A G T C A G T C
T C G A A T C G T G A C C A T G A G C T G T C A A G T C C G T A A T G C C T G A A T G C C G T A A G T C C G T A C G T A G C A T C A G T G C T A T A C G A T G C G C T A T G A C A C G T

UNCX/MA0721.1/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AAAATTAAGACC
CTAATTAA----
C G T A C G T A C G T A C G T A A C G T A C G T C G T A C G T A A C T G C G T A A G T C A G T C
A G T C G A C T C T G A G T C A G A C T G A C T G C T A T C G A A C G T A C G T A C G T A C G T