Information for 13-AGAAAGTTGCCA (Motif 13)

C G T A A C T G C G T A C G T A C G T A A C T G A C G T A C G T A C T G A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G A G T C C G T A C G T A A G T C A C G T A C G T A C G T A G T C A C G T
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets19.0 +/- 0.0bp
Average Position of motif in Background147.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0137.1_Irf3_2/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGAAAGTTGCCA
GGAGAAAGGTGCGA
A C G T A C G T C G T A A C T G C G T A C G T A C G T A A C T G A C G T A C G T A C T G A G T C A G T C C G T A
C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

PRDM1/MA0508.3/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---AGAAAGTTGCCA
NAGAGAAAGNA----
A C G T A C G T A C G T C G T A A C T G C G T A C G T A C G T A A C T G A C G T A C G T A C T G A G T C A G T C C G T A
C T G A C T G A C A T G G C T A C A T G G C T A C G T A G C T A C A T G C G T A C T G A A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.61
Offset:6
Orientation:forward strand
Alignment:AGAAAGTTGCCA--
------TTGCCAAG
C G T A A C T G C G T A C G T A C G T A A C T G A C G T A C G T A C T G A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

RFX7/MA1554.1/Jaspar

Match Rank:4
Score:0.61
Offset:4
Orientation:forward strand
Alignment:AGAAAGTTGCCA-
----CGTTGCTAT
C G T A A C T G C G T A C G T A C G T A A C T G A C G T A C G T A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A T G C A T C G A G C T A G C T C T A G A T G C A G C T C T G A G A C T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:AGAAAGTTGCCA---
---CTGTTGCTAGGS
C G T A A C T G C G T A C G T A C G T A A C T G A C G T A C G T A C T G A G T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

RFX1/MA0509.2/Jaspar

Match Rank:6
Score:0.60
Offset:3
Orientation:forward strand
Alignment:AGAAAGTTGCCA-----
---CTGTTGCTATGGCA
C G T A A C T G C G T A C G T A C G T A A C T G A C G T A C G T A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C C A G T C T A G A G C T G A C T C T A G G A T C A G C T C T G A C A G T C T A G T C A G G T A C C T G A

PB0146.1_Mafk_2/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGAAAGTTGCCA--
GAAAAAATTGCAAGG
A C G T C G T A A C T G C G T A C G T A C G T A A C T G A C G T A C G T A C T G A G T C A G T C C G T A A C G T A C G T
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.59
Offset:5
Orientation:forward strand
Alignment:AGAAAGTTGCCA--
-----CGTGCCAAG
C G T A A C T G C G T A C G T A C G T A A C T G A C G T A C G T A C T G A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:9
Score:0.59
Offset:7
Orientation:forward strand
Alignment:AGAAAGTTGCCA---
-------TGCCAGCB
C G T A A C T G C G T A C G T A C G T A A C T G A C G T A C G T A C T G A G T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C T A G A T G C A G T C G T C A T A C G A T G C A T C G

ELF3/MA0640.2/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AGAAAGTTGCCA
ANCAGGAAGTGGNN-
A C G T A C G T A C G T C G T A A C T G C G T A C G T A C G T A A C T G A C G T A C G T A C T G A G T C A G T C C G T A
C G T A T A G C T A G C T G C A T C A G C T A G T G C A C T G A T C A G G C A T C T A G T C A G T C G A C T G A A C G T