Information for 1-GCCTTGCTATGG (Motif 2)

A C T G A G T C A G T C A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A A C G T C G T A A C T G A G T C C G T A C G T A A C T G A C T G A G T C
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets130.0 +/- 0.0bp
Average Position of motif in Background188.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0055.1_Rfx4_1/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-GCCTTGCTATGG--
NNCGTTGCTATGGNN
A C G T A C T G A G T C A G T C A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C T G A C T G A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

RFX3/MA0798.2/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GCCTTGCTATGG--
CGGTTGCTATGGCA
A C T G A G T C A G T C A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C T G A C T G A C G T A C G T
A G T C A C T G C T A G A G C T G A C T C T A G G A T C G A C T T C G A C A G T C T A G T C A G G T A C C T G A

RFX1/MA0509.2/Jaspar

Match Rank:3
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GCCTTGCTATGG--
CTGTTGCTATGGCA
A C T G A G T C A G T C A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C T G A C T G A C G T A C G T
A G T C C A G T C T A G A G C T G A C T C T A G G A T C A G C T C T G A C A G T C T A G T C A G G T A C C T G A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GCCTTGCTATGG--
NCCGTTGCTANGNGN
A C G T A C T G A G T C A G T C A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C T G A C T G A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

PB0054.1_Rfx3_1/Jaspar

Match Rank:5
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----GCCTTGCTATGG------
NTNNNNNGTTGCTANGGNNCANA
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GCCTTGCTATGG-----
---TTGCCATGGCAACC
A C T G A G T C A G T C A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

RFX7/MA1554.1/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GCCTTGCTATGG
-CGTTGCTAT--
A C T G A G T C A G T C A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C T G A C T G
A C G T A T G C A T C G A G C T A G C T C T A G A T G C A G C T C T G A G A C T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GCCTTGCTATGG-----
---TTGCCATGGCAACN
A C T G A G T C A G T C A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCCTTGCTATGG
CTGTTGCTAGGS
A C T G A G T C A G T C A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C T G A C T G
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

RFX5/MA0510.2/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GCCTTGCTATGG-----
-CGTTGCCATGGCAACG
A C T G A G T C A G T C A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G