Information for 23-AATATACATTAT (Motif 28)

C G T A C G T A A C G T C G T A A C G T C G T A A G T C C G T A A C G T A C G T C G T A A C G T
Reverse Opposite:
C G T A A C G T C G T A C G T A A C G T A C T G A C G T C G T A A C G T C G T A A C G T A C G T
p-value:1e-3
log p-value:-7.630e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif22.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets94.0 +/- 0.0bp
Average Position of motif in Background103.2 +/- 59.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-AATATACATTAT
GAATATTCAT---
A C G T C G T A C G T A A C G T C G T A A C G T C G T A A G T C C G T A A C G T A C G T C G T A A C G T
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---AATATACATTAT
ATGAATATTCATGAG
A C G T A C G T A C G T C G T A C G T A A C G T C G T A A C G T C G T A A G T C C G T A A C G T A C G T C G T A A C G T
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

Foxq1/MA0040.1/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AATATACATTAT
AATAAACAATN-
C G T A C G T A A C G T C G T A A C G T C G T A A G T C C G T A A C G T A C G T C G T A A C G T
G C T A T G C A A G C T C G T A C G T A C G T A A G T C C G T A C G T A A G C T C G T A A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AATATACATTAT
GHATATKCAT---
A C G T C G T A C G T A A C G T C G T A A C G T C G T A A G T C C G T A A C G T A C G T C G T A A C G T
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T A C G T

POU3F3/MA0788.1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AATATACATTAT
AAATTAGCATAAT
A C G T C G T A C G T A A C G T C G T A A C G T C G T A A G T C C G T A A C G T A C G T C G T A A C G T
G C T A G C T A C G T A G A C T G C A T C G T A T C A G G T A C T G C A G C A T G C T A G C T A G C A T

POU3F1/MA0786.1/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AATATACATTAT
TAATTTGCATAA-
A C G T C G T A C G T A A C G T C G T A A C G T C G T A A G T C C G T A A C G T A C G T C G T A A C G T
C G A T G T C A G C T A G C A T G C A T G C A T T C A G G T A C C T G A G A C T C G T A G C T A A C G T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:7
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AATATACATTAT----
-WYATGCATWATGCAT
C G T A C G T A A C G T C G T A A C G T C G T A A G T C C G T A A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T

PH0148.1_Pou3f3/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AATATACATTAT---
AAAATATGCATAATAAA
A C G T A C G T C G T A C G T A A C G T C G T A A C G T C G T A A G T C C G T A A C G T A C G T C G T A A C G T A C G T A C G T A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

FOXH1/MA0479.1/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AATATACATTAT
TCCAATCCACA----
A C G T A C G T A C G T C G T A C G T A A C G T C G T A A C G T C G T A A G T C C G T A A C G T A C G T C G T A A C G T
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A A C G T A C G T A C G T A C G T

ZBTB32/MA1580.1/Jaspar

Match Rank:10
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AATATACATTAT
--TGTACAGTAT
C G T A C G T A A C G T C G T A A C G T C G T A A G T C C G T A A C G T A C G T C G T A A C G T
A C G T A C G T G C A T C T A G C G A T G T C A A T G C C G T A A C T G A G C T C T G A C G A T