Information for 7-CAACAACTTA (Motif 11)

A G T C C G T A C G T A A G T C C G T A C G T A A G T C A C G T A C G T C G T A
Reverse Opposite:
A C G T C G T A C G T A A C T G A C G T A C G T A C T G A C G T A C G T A C T G
p-value:1e-3
log p-value:-7.492e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif52.2
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets6.0 +/- 0.0bp
Average Position of motif in Background90.4 +/- 73.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3-2/MA0122.3/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CAACAACTTA--
ATAACCACTTAAA
A C G T A G T C C G T A C G T A A G T C C G T A C G T A A G T C A C G T A C G T C G T A A C G T A C G T
C G T A C G A T C G T A C G T A T G A C G A T C G C T A G T A C G C A T G A C T G C T A C G T A G C T A

PH0004.1_Nkx3-2/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CAACAACTTA-----
CATAACCACTTAACAAC
A C G T A C G T A G T C C G T A C G T A A G T C C G T A C G T A A G T C A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

Nkx3-1/MA0124.2/Jaspar

Match Rank:3
Score:0.68
Offset:2
Orientation:forward strand
Alignment:CAACAACTTA-
--ACCACTTAA
A G T C C G T A C G T A A G T C C G T A C G T A A G T C A C G T A C G T C G T A A C G T
A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CAACAACTTA-----
CTTAACCACTTAAGGAT
A C G T A C G T A G T C C G T A C G T A A G T C C G T A C G T A A G T C A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:5
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CAACAACTTA-
-AAGCACTTAA
A G T C C G T A C G T A A G T C C G T A C G T A A G T C A C G T A C G T C G T A A C G T
A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

PB0122.1_Foxk1_2/Jaspar

Match Rank:6
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CAACAACTTA-
CAAACAACAACACCT
A C G T A C G T A C G T A C G T A G T C C G T A C G T A A G T C C G T A C G T A A G T C A C G T A C G T C G T A A C G T
G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T

PB0175.1_Sox4_2/Jaspar

Match Rank:7
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CAACAACTTA---
TNCNNAACAATTTTTNC
A C G T A C G T A C G T A C G T A G T C C G T A C G T A A G T C C G T A C G T A A G T C A C G T A C G T C G T A A C G T A C G T A C G T
G A C T G A C T G A T C A T G C G A C T C T G A C G T A A G T C C G T A C T G A G A C T G A C T G A C T G A C T C G A T A G T C A T G C

PH0005.1_Barhl1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CAACAACTTA----
AACAACCAATTAATTC
A C G T A C G T A G T C C G T A C G T A A G T C C G T A C G T A A G T C A C G T A C G T C G T A A C G T A C G T A C G T A C G T
G T C A C T G A G T A C T C G A C T G A A T G C G A T C C T G A G C T A A C G T G A C T C G T A C T G A A C G T C G A T G A T C

PH0115.1_Nkx2-6/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CAACAACTTA-----
TAAGCCACTTAACATT
A C G T A G T C C G T A C G T A A G T C C G T A C G T A A G T C A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

PH0108.1_Msx3/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CAACAACTTA----
CAAAACCAATTAATTT
A C G T A C G T A G T C C G T A C G T A A G T C C G T A C G T A A G T C A C G T A C G T C G T A A C G T A C G T A C G T A C G T
T G A C T C G A G T C A C T G A T C G A A T G C A G T C C T G A G T C A C G A T G A C T C G T A C T G A A C G T G A C T G C A T