Information for 6-CAAATTAGGTCA (Motif 6)

A G T C C G T A C G T A C G T A A C G T A C G T C G T A A C T G A C T G A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A G T C A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C T G
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets102.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:1
Score:0.86
Offset:1
Orientation:forward strand
Alignment:CAAATTAGGTCA-
-WAABTAGGTCAV
A G T C C G T A C G T A C G T A A C G T A C G T C G T A A C T G A C T G A C G T A G T C C G T A A C G T
A C G T C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.84
Offset:2
Orientation:forward strand
Alignment:CAAATTAGGTCA
--AAYTAGGTCA
A G T C C G T A C G T A C G T A A C G T A C G T C G T A A C T G A C T G A C G T A G T C C G T A
A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:3
Score:0.84
Offset:2
Orientation:forward strand
Alignment:CAAATTAGGTCA
--AAYTAGGTCA
A G T C C G T A C G T A C G T A A C G T A C G T C G T A A C T G A C T G A C G T A G T C C G T A
A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

RORB/MA1150.1/Jaspar

Match Rank:4
Score:0.82
Offset:2
Orientation:forward strand
Alignment:CAAATTAGGTCA-
--AATTAGGTCAC
A G T C C G T A C G T A C G T A A C G T A C G T C G T A A C T G A C T G A C G T A G T C C G T A A C G T
A C G T A C G T C G T A G C T A C G A T A C G T C T G A A C T G C T A G A G C T G A T C C T G A G A T C

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:5
Score:0.82
Offset:1
Orientation:forward strand
Alignment:CAAATTAGGTCA----
-AAWCTAGGTCARDNN
A G T C C G T A C G T A C G T A A C G T A C G T C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T
A C G T C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A

RORA(var.2)/MA0072.1/Jaspar

Match Rank:6
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-CAAATTAGGTCA-
TATAAGTAGGTCAA
A C G T A G T C C G T A C G T A C G T A A C G T A C G T C G T A A C T G A C T G A C G T A G T C C G T A A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

RORC/MA1151.1/Jaspar

Match Rank:7
Score:0.81
Offset:0
Orientation:forward strand
Alignment:CAAATTAGGTCA
ATAAGTAGGTCA
A G T C C G T A C G T A C G T A A C G T A C G T C G T A A C T G A C T G A C G T A G T C C G T A
C T G A C G A T G C T A C G T A A C T G A C G T T C G A C A T G C T A G A C G T A G T C C T G A

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.71
Offset:2
Orientation:forward strand
Alignment:CAAATTAGGTCA
--ATCAAGGTCA
A G T C C G T A C G T A C G T A A C G T A C G T C G T A A C T G A C T G A C G T A G T C C G T A
A C G T A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A

ATF2/MA1632.1/Jaspar

Match Rank:9
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CAAATTAGGTCA--
-AAATGAGGTCATT
A G T C C G T A C G T A C G T A A C G T A C G T C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T
A C G T C G T A C T G A T C G A G A C T C A T G G C T A A C T G T C A G G C A T G T A C C T G A A G C T G A C T

PH0058.1_Hoxb3/Jaspar

Match Rank:10
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----CAAATTAGGTCA
TNNNACTAATTAGNTCA
A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C G T A C G T C G T A A C T G A C T G A C G T A G T C C G T A
G C A T G A T C A G T C G T C A T C G A A T G C G A C T G T C A C G T A C G A T A C G T C T G A T A C G A T G C A C G T A G T C C G T A