Information for 1-CACGACTAAT (Motif 1)

A G T C C G T A A G T C A C T G C G T A A G T C A C G T C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T C G T A A C T G A C G T A G T C A C T G A C G T A C T G
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets94.0 +/- 0.0bp
Average Position of motif in Background44.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:1
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CACGACTAAT---
ACCGTGACTAATTNN
A C G T A C G T A G T C C G T A A G T C A C T G C G T A A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

PB0032.1_IRC900814_1/Jaspar

Match Rank:2
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---CACGACTAAT---
ATTTACGACAAATAGC
A C G T A C G T A C G T A G T C C G T A A G T C A C T G C G T A A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T
C G T A C G A T G A C T A G C T G C T A A G T C A C T G C T G A T G A C C T G A C G T A G C T A G C A T C G T A C T A G A G T C

Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer

Match Rank:3
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CACGACTAAT
NHRTCACGACDN--
A C G T A C G T A C G T A C G T A G T C C G T A A G T C A C T G C G T A A G T C A C G T C G T A C G T A A C G T
T C A G G C T A T C A G C A G T T G A C G T C A A G T C A T C G T G C A G T A C C A G T G A T C A C G T A C G T

NFE2/MA0841.1/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CACGACTAAT-
CATGACTCATC
A G T C C G T A A G T C A C T G C G T A A G T C A C G T C G T A C G T A A C G T A C G T
T G A C T C G A G A C T A C T G G T C A T A G C A G C T G A T C T G C A A G C T A T G C

JDP2/MA0655.1/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CACGACTAAT
-ATGACTCAT
A G T C C G T A A G T C A C T G C G T A A G T C A C G T C G T A C G T A A C G T
A C G T T C G A G A C T A C T G C G T A T A G C C A G T G T A C C G T A G A C T

JUNB/MA0490.2/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CACGACTAAT--
AAATGACTCATTT
A C G T A G T C C G T A A G T C A C T G C G T A A G T C A C G T C G T A C G T A A C G T A C G T A C G T
C G T A C T G A T C G A G A C T C A T G C G T A A T G C C G A T G T A C C T G A A G C T G C A T G C A T

PH0089.1_Isx/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CACGACTAAT-------
-ACNNCTAATTAGNNNN
A G T C C G T A A G T C A C T G C G T A A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T

BACH2/MA1101.2/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CACGACTAAT-----
AAAGCATGACTCATCATTT
A C G T A C G T A C G T A C G T A G T C C G T A A G T C A C T G C G T A A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C G T A C G T A A T C G G T A C T C G A A G C T C A T G T G C A T A G C A C G T G T A C T C G A A G C T A T G C T C G A G C A T G C A T G A C T

JUND/MA0491.2/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CACGACTAAT--
TGATGACTCATCC
A C G T A G T C C G T A A G T C A C T G C G T A A G T C A C G T C G T A C G T A A C G T A C G T A C G T
C G A T C T A G T C G A G A C T C A T G G C T A A T G C C G A T G T A C C T G A A G C T G T A C G A T C

FOS::JUND/MA1141.1/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CACGACTAAT--
NNATGACTCATNN
A C G T A G T C C G T A A G T C A C T G C G T A A G T C A C G T C G T A C G T A A C G T A C G T A C G T
A G T C A C T G T C G A A C G T A C T G C G T A A G T C C A G T G T A C C T G A A G C T G T A C T G A C