Information for 4-TTGGGTTTATAA (Motif 6)

A C G T A C G T A C T G A C T G A C T G A C G T A C G T A C G T C G T A A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A A C G T C G T A C G T A C G T A A G T C A G T C A G T C C G T A C G T A
p-value:1e-4
log p-value:-1.024e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.0 +/- 0.0bp
Average Position of motif in Background188.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:1
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TTGGGTTTATAA--
--DGWTTTATGRCN
A C G T A C G T A C T G A C T G A C T G A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C G T A C G T
A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

PB0174.1_Sox30_2/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TTGGGTTTATAA-----
-TAAGATTATAATACGG
A C G T A C G T A C T G A C T G A C T G A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TTGGGTTTATAA
-NGGGATTA---
A C G T A C G T A C T G A C T G A C T G A C G T A C G T A C G T C G T A A C G T C G T A C G T A
A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T A C G T

VDR/MA0693.2/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TTGGGTTTATAA
-TGAGTTCA---
A C G T A C G T A C T G A C T G A C T G A C G T A C G T A C G T C G T A A C G T C G T A C G T A
A C G T G A C T T C A G C T G A A C T G A C G T C A G T G A T C C T G A A C G T A C G T A C G T

PB0187.1_Tcf7_2/Jaspar

Match Rank:5
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TTGGGTTTATAA-----
--NNNTTTNTAATACNG
A C G T A C G T A C T G A C T G A C T G A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C A G T C T A G C A G T C A G T C G A T T G C A A G C T G T C A C G T A C G A T C G T A G T A C T C A G C A T G

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TTGGGTTTATAA--
--NTGTTTAYATWW
A C G T A C G T A C T G A C T G A C T G A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C G T A C G T
A C G T A C G T C A G T A C G T C T A G A C G T A C G T A C G T C G T A A G C T T G C A G A C T C G T A C G T A

OTX2/MA0712.2/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TTGGGTTTATAA
AAGGGATTAGAA
A C G T A C G T A C T G A C T G A C T G A C G T A C G T A C G T C G T A A C G T C G T A C G T A
G C T A C G T A C T A G C T A G C T A G G T C A C A G T G C A T C G T A C T A G C G T A C G T A

PITX2/MA1547.1/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TTGGGTTTATAA
--GGGATTAN--
A C G T A C G T A C T G A C T G A C T G A C G T A C G T A C G T C G T A A C G T C G T A C G T A
A C G T A C G T A C T G T C A G C T A G G T C A A C G T A G C T C G T A C A G T A C G T A C G T

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TTGGGTTTATAA-
-CBTGTTTAYAWW
A C G T A C G T A C T G A C T G A C T G A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C G T
A C G T A T G C A C G T A C G T C T A G A C G T A C G T A C G T C G T A A G T C G C T A C G A T G C A T

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TTGGGTTTATAA-
---NTTTTATDRG
A C G T A C G T A C T G A C T G A C T G A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C G T
A C G T A C G T A C G T C T A G G C A T A C G T G C A T G A C T C G T A G A C T C A T G C T A G A T C G