Information for 1-GGCTAGGTCC (Motif 1)

A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A A G T C A G T C A C G T C G T A A C T G A G T C A G T C
p-value:1e-4
log p-value:-1.023e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets135.0 +/- 0.0bp
Average Position of motif in Background14.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF682/MA1599.1/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GGCTAGGTCC----
CGGGCCAAGCCCCTAT
A C G T A C G T A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T A G T C A G T C A C G T A C G T A C G T A C G T
A G T C T C A G C T A G T C A G T A G C A G T C T G C A T G C A A C T G A G T C A G T C A T G C G T A C C G A T T C G A A G C T

HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:2
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GGCTAGGTCC--
--TWVGGTCCGC
A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T A G T C A G T C A C G T A C G T
A C G T A C G T A G C T C G A T T A C G A T C G A T C G C A G T A G T C A G T C A C T G T A G C

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GGCTAGGTCC
----AGGTCA
A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T A G T C A G T C
A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A

KLF3/MA1516.1/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GGCTAGGTCC
NGGGCGTGGTC-
A C G T A C G T A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T A G T C A G T C
C G A T C T A G A C T G A C T G G A T C C A T G A G C T C T A G A T C G A G C T G A T C A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:5
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GGCTAGGTCC
--CTAGGCCT
A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T A G T C A G T C
A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T

HNF4G/MA0484.2/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GGCTAGGTCC---
TCCAAAGTCCAGA
A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T A G T C A G T C A C G T A C G T A C G T
C A G T A G T C G A T C T C G A T C G A C T G A A C T G C A G T G A T C G A T C C G T A T C A G C T G A

NR5A1/MA1540.1/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GGCTAGGTCC-
GTCAAGGTCAC
A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T A G T C A G T C A C G T
A C T G G A C T A T G C C T G A C G T A A C T G A C T G G A C T A G T C C T G A G A T C

HNF4A/MA0114.4/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GGCTAGGTCC---
TCCAAAGTCCAAA
A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T A G T C A G T C A C G T A C G T A C G T
C A G T G A T C G A T C T G C A T C G A C T G A A C T G C A G T G A T C G A T C C G T A C T G A C T G A

PB0014.1_Esrra_1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GGCTAGGTCC-----
TATTCAAGGTCATGCGA
A C G T A C G T A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T
C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GGCTAGGTCC--
--CAAGGHCANV
A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T A G T C A G T C A C G T A C G T
A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G