Information for 1-GCCTACATCG (Motif 1)

A C T G A G T C A G T C A C G T C G T A A G T C C G T A A C G T A G T C A C T G
Reverse Opposite:
A G T C A C T G C G T A A C G T A C T G A C G T C G T A A C T G A C T G A G T C
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets12.0 +/- 0.0bp
Average Position of motif in Background105.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZSCAN29/MA1602.1/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCCTACATCG-
CGTCTACACGGG
A C G T A C T G A G T C A G T C A C G T C G T A A G T C C G T A A C G T A G T C A C T G A C G T
A G T C C T A G A G C T G T A C A G C T G C T A G A T C C T G A A T G C T C A G C T A G T A C G

YY2/MA0748.2/Jaspar

Match Rank:2
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GCCTACATCG
CGCCGCCATNN
A C G T A C T G A G T C A G T C A C G T C G T A A G T C C G T A A C G T A G T C A C T G
A T G C C A T G A T G C T A G C C T A G A G T C A T G C T C G A A G C T A T G C C A G T

ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer

Match Rank:3
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GCCTACATCG---
RGMCCTACTRTGTGC
A C G T A C G T A C T G A G T C A G T C A C G T C G T A A G T C C G T A A C G T A G T C A C T G A C G T A C G T A C G T
C T A G T C A G T G C A A G T C A G T C A G C T C G T A G T A C A G C T T C G A A G C T A T C G A G C T C T A G G A T C

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:4
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GCCTACATCG
AGGCCTAG----
A C G T A C G T A C T G A G T C A G T C A C G T C G T A A G T C C G T A A C G T A G T C A C T G
T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T A C G T

RORC/MA1151.1/Jaspar

Match Rank:5
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--GCCTACATCG
TGACCTANTTAN
A C G T A C G T A C T G A G T C A G T C A C G T C G T A A G T C C G T A A C G T A G T C A C T G
G A C T T C A G T G C A G A T C G T A C A G C T T G C A T A G C G C A T C G A T G C T A G A C T

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:6
Score:0.52
Offset:-6
Orientation:reverse strand
Alignment:------GCCTACATCG
NNHYTGACCTAGWTT-
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C G T C G T A A G T C C G T A A C G T A G T C A C T G
A C G T G A T C G A C T G A T C A C G T A C T G T C G A A G T C A G T C A G C T C T G A T C A G C G A T C G A T G C A T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GCCTACATCG
AGGCCTNG----
A C G T A C G T A C T G A G T C A G T C A C G T C G T A A G T C C G T A A C G T A G T C A C T G
C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T A C G T

GCM2/MA0767.1/Jaspar

Match Rank:8
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GCCTACATCG
TACCCGCATN-
A C G T A C T G A G T C A G T C A C G T C G T A A G T C C G T A A C G T A G T C A C T G
G A C T C T G A A G T C G T A C G T A C T A C G A G T C T C G A A G C T T G C A A C G T

ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GCCTACATCG---
-ACCACATCCTGT
A C T G A G T C A G T C A C G T C G T A A G T C C G T A A C G T A G T C A C T G A C G T A C G T A C G T
A C G T T G C A A G T C A G T C C G T A A G T C C G T A A C G T A G T C A G T C C A G T A T C G A G C T

PB0184.1_Tbp_2/Jaspar

Match Rank:10
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----GCCTACATCG-
GNNCGCTTAAATCGG
A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C G T C G T A A G T C C G T A A C G T A G T C A C T G A C G T
C A T G T A C G C A G T G T A C A T C G T A G C C G A T C A G T C G T A C G T A C T G A G C A T A T G C T A C G A C T G