Information for 2-GTCATTAGGA (Motif 4)

A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C T G A C T G C G T A
Reverse Opposite:
A C G T A G T C A G T C A C G T C G T A C G T A A C G T A C T G C G T A A G T C
p-value:1e-3
log p-value:-8.352e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif22.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets160.0 +/- 0.0bp
Average Position of motif in Background90.3 +/- 67.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA4/MA1496.1/Jaspar

Match Rank:1
Score:0.78
Offset:0
Orientation:forward strand
Alignment:GTCATTAGGA
GTCATTAG--
A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C T G A C T G C G T A
T C A G A G C T T G A C C T G A A C G T A G C T T C G A T C A G A C G T A C G T

HOXB4/MA1499.1/Jaspar

Match Rank:2
Score:0.78
Offset:0
Orientation:forward strand
Alignment:GTCATTAGGA
ATCATTAG--
A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C T G A C T G C G T A
T C G A A G C T G T A C C T G A A C G T A C G T C T G A T C A G A C G T A C G T

HOXD3/MA0912.2/Jaspar

Match Rank:3
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:GTCATTAGGA
GTAATTAG--
A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C T G A C T G C G T A
T A C G A G C T G T C A C G T A A C G T A C G T C T G A T C A G A C G T A C G T

HOXC4/MA1504.1/Jaspar

Match Rank:4
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GTCATTAGGA
GTCATTAA--
A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C T G A C T G C G T A
T C A G G A C T G T A C C T G A A C G T A C G T C T G A T C G A A C G T A C G T

HOXD4/MA1507.1/Jaspar

Match Rank:5
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GTCATTAGGA
ATCATTAG--
A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C T G A C T G C G T A
T C G A A G C T G T A C C T G A A C G T A C G T C T G A C T A G A C G T A C G T

GSX2/MA0893.2/Jaspar

Match Rank:6
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GTCATTAGGA
GTAATTAG--
A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C T G A C T G C G T A
T A C G G A C T T G C A C T G A A G C T A C G T C T G A C T A G A C G T A C G T

HOXA2/MA0900.2/Jaspar

Match Rank:7
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GTCATTAGGA
GTAATTAG--
A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C T G A C T G C G T A
T A C G A G C T T G C A C G T A A C G T A C G T C T G A T A C G A C G T A C G T

VAX2/MA0723.1/Jaspar

Match Rank:8
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GTCATTAGGA
NTAATTAG--
A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C T G A C T G C G T A
T C A G G A C T G T C A G C T A C G A T C A G T C T G A T C A G A C G T A C G T

HOXA5/MA0158.2/Jaspar

Match Rank:9
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GTCATTAGGA
GTAATTAC--
A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C T G A C T G C G T A
A T C G A G C T T G C A C G T A A C G T A C G T C G T A T A G C A C G T A C G T

EVX2/MA0888.1/Jaspar

Match Rank:10
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GTCATTAGGA
GGTAATTAGC-
A C G T A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C T G A C T G C G T A
T A C G T A C G G A C T T G C A T C G A A C G T A G C T C T G A T A C G A T G C A C G T