Information for 6-GTCCTCAAGTAA (Motif 9)

A C T G A C G T A G T C A G T C A C G T A G T C C G T A C G T A A C T G A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A A G T C A C G T A C G T A C T G C G T A A C T G A C T G C G T A A G T C
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets82.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GTCCTCAAGTAA---
TGACCTNTAGTAACCC
A C G T A C T G A C G T A G T C A G T C A C G T A G T C C G T A C G T A A C T G A C G T C G T A C G T A A C G T A C G T A C G T
G A C T C T A G T G C A G T A C G A T C A G C T T A C G C A G T C T G A C T A G G C A T C T G A C T G A G T A C G T A C G A T C

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GTCCTCAAGTAA------
TGACCTAAAGTAACCTCTG
A C G T A C T G A C G T A G T C A G T C A C G T A G T C C G T A C G T A A C T G A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A G C T T C A G G T C A G T A C G A T C A G C T T C G A C T G A C T G A C T A G C G A T C T G A T C G A G T A C G T A C A G C T A G T C C A G T A C T G

THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer

Match Rank:3
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GTCCTCAAGTAA--
TGACCTCAGGTGACC
A C G T A C T G A C G T A G T C A G T C A C G T A G T C C G T A C G T A A C T G A C G T C G T A C G T A A C G T A C G T
G A C T T A C G C G T A T G A C A G T C G A C T A T G C C T G A C A T G T A C G G C A T T A C G T C G A T G A C G T A C

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GTCCTCAAGTAA--
TGWCCTCARNTGACC
A C G T A C T G A C G T A G T C A G T C A C G T A G T C C G T A C G T A A C T G A C G T C G T A C G T A A C G T A C G T
G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GTCCTCAAGTAA
NTGCCCANNGGTNA
A C G T A C G T A C T G A C G T A G T C A G T C A C G T A G T C C G T A C G T A A C T G A C G T C G T A C G T A
T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A

NKX2-8/MA0673.1/Jaspar

Match Rank:6
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GTCCTCAAGTAA
---NTCAAGTGG
A C T G A C G T A G T C A G T C A C G T A G T C C G T A C G T A A C T G A C G T C G T A C G T A
A C G T A C G T A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G

ZBTB6/MA1581.1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GTCCTCAAGTAA
NNGGCTCAAGGNN
A C G T A C T G A C G T A G T C A G T C A C G T A G T C C G T A C G T A A C T G A C G T C G T A C G T A
A T G C A C T G C T A G C A T G A G T C C A G T A T G C G T C A T C G A C A T G A T C G T C G A G T A C

PH0066.1_Hoxc11/Jaspar

Match Rank:8
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GTCCTCAAGTAA
TAAAGTCGTAAAATAG
A C G T A C G T A C G T A C G T A C T G A C G T A G T C A G T C A C G T A G T C C G T A C G T A A C T G A C G T C G T A C G T A
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

HOXB9/MA1503.1/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GTCCTCAAGTAA
GTCGTAAAAT--
A C T G A C G T A G T C A G T C A C G T A G T C C G T A C G T A A C T G A C G T C G T A C G T A
T C A G A G C T A G T C T C A G A C G T G C T A C G T A G T C A G C T A G A C T A C G T A C G T

TFAP2A/MA0003.4/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GTCCTCAAGTAA
ATTGCCTCAGGCCA
A C G T A C G T A C T G A C G T A G T C A G T C A C G T A G T C C G T A C G T A A C T G A C G T C G T A C G T A
T G C A A G C T C A G T A T C G T G A C A G T C A G C T T A G C T C G A T A C G A T C G T A G C G T A C T G C A