Information for 4-GGTATTCACACA (Motif 6)

A C T G A C T G A C G T C G T A A C G T A C G T A G T C C G T A A G T C C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T A C T G A C G T A C T G C G T A C G T A A C G T C G T A A G T C A G T C
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

EOMES/MA0800.1/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GGTATTCACACA--
-NTTTTCACACCTT
A C T G A C T G A C G T C G T A A C G T A C G T A G T C C G T A A G T C C G T A A G T C C G T A A C G T A C G T
A C G T C T G A G C A T C A G T C G A T A G C T T G A C C T G A A G T C T C G A T G A C G A T C G A C T G A C T

PB0013.1_Eomes_1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GGTATTCACACA-----
NNTTTTCACACCTTNNN
A C T G A C T G A C G T C G T A A C G T A C G T A G T C C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C T G A C T G A C G A T C A G T C A G T A G C T T G A C C T G A A G T C C T G A T A G C G A T C G A C T G A C T C G A T A G C T T G A C

TBX21/MA0690.1/Jaspar

Match Rank:3
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:GGTATTCACACA--
----TTCACACCTT
A C T G A C T G A C G T C G T A A C G T A C G T A G T C C G T A A G T C C G T A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A G C T T G A C C T G A G T A C T C G A T G A C G A T C G A C T G A C T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:4
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:GGTATTCACACA--
----TTMACACCTT
A C T G A C T G A C G T C G T A A C G T A C G T A G T C C G T A A G T C C G T A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T

TBR1/MA0802.1/Jaspar

Match Rank:5
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GGTATTCACACA-
---TTTCACACCT
A C T G A C T G A C G T C G T A A C G T A C G T A G T C C G T A A G T C C G T A A G T C C G T A A C G T
A C G T A C G T A C G T C G A T C G A T G A C T T G A C C T G A T A G C T C G A T A G C G A T C G A C T

FOXB1/MA0845.1/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GGTATTCACACA
-ATATTTACATA
A C T G A C T G A C G T C G T A A C G T A C G T A G T C C G T A A G T C C G T A A G T C C G T A
A C G T C G T A G A C T T C G A C G A T C G A T A C G T C T G A G A T C G C T A G A C T C G T A

Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer

Match Rank:7
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GGTATTCACACA-
---TTTCACACCT
A C T G A C T G A C G T C G T A A C G T A C G T A G T C C G T A A G T C C G T A A G T C C G T A A C G T
A C G T A C G T A C G T A C G T G C A T G A C T T A G C C G T A G A T C C G T A T G A C G A T C G A C T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:8
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GGTATTCACACA-
---ATTAACACCT
A C T G A C T G A C G T C G T A A C G T A C G T A G T C C G T A A G T C C G T A A G T C C G T A A C G T
A C G T A C G T A C G T G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T

TBX2/MA0688.1/Jaspar

Match Rank:9
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GGTATTCACACA--
---TTTCACACCTN
A C T G A C T G A C G T C G T A A C G T A C G T A G T C C G T A A G T C C G T A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T G C A T G C A T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T G C A T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:10
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GGTATTCACACA-
---KTTCACACCT
A C T G A C T G A C G T C G T A A C G T A C G T A G T C C G T A A G T C C G T A A G T C C G T A A C G T
A C G T A C G T A C G T C A G T C A G T A C G T T A G C G C T A A G T C C T G A G T A C G A T C G C A T