Information for 1-CAAAGCGACC (Motif 2)

A G T C C G T A C G T A C G T A A C T G A G T C A C T G C G T A A G T C A G T C
Reverse Opposite:
A C T G A C T G A C G T A G T C A C T G A G T C A C G T A C G T A C G T A C T G
p-value:1e-4
log p-value:-1.023e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.0 +/- 0.0bp
Average Position of motif in Background165.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CAAAGCGACC-
ACAAAGGNBCCT
A C G T A G T C C G T A C G T A C G T A A C T G A G T C A C T G C G T A A G T C A G T C A C G T
G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

SOX10/MA0442.2/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CAAAGCGACC
AAAACAAAGAA---
A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C T G A G T C A C T G C G T A A G T C A G T C
C T G A C T G A T G C A G C T A A G T C C G T A G C T A G C T A A C T G T C G A T G C A A C G T A C G T A C G T

TCF7/MA0769.2/Jaspar

Match Rank:3
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CAAAGCGACC
ANATCAAAGNN---
A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C T G A G T C A C T G C G T A A G T C A G T C
C G T A A T G C G C T A G C A T T G A C G C T A G C T A C G T A A C T G T C A G T G C A A C G T A C G T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CAAAGCGACC--
CCGCATAGCAACGGA
A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C T G A G T C A C T G C G T A A G T C A G T C A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CAAAGCGACC--
TACCATAGCAACGGT
A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C T G A G T C A C T G C G T A A G T C A G T C A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

RFX1/MA0509.2/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CAAAGCGACC-
TNCCATAGCAACNN
A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C T G A G T C A C T G C G T A A G T C A G T C A C G T
G A C T C A T G A G T C G A T C G T C A G A C T T C G A C T A G G A T C C T G A T C G A G A T C G T C A T C A G

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CAAAGCGACC
ACATCAAAGG----
A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C T G A G T C A C T G C G T A A G T C A G T C
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

TCF7L2/MA0523.1/Jaspar

Match Rank:8
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CAAAGCGACC
AAAGATCAAAGGAA--
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C T G A G T C A C T G C G T A A G T C A G T C
C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A A C G T A C G T

RFX3/MA0798.2/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CAAAGCGACC-
TNCCATAGCAACNN
A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C T G A G T C A C T G C G T A A G T C A G T C A C G T
G A C T C A T G A G T C G A T C G T C A A G C T C T G A C T A G G A T C C T G A T C G A G A T C T G A C T C A G

SOX4/MA0867.2/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CAAAGCGACC
GAACAAAGGG---
A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C T G A G T C A C T G C G T A A G T C A G T C
C T A G T C G A C G T A A T G C T C G A T C G A G C T A C T A G T C A G T C A G A C G T A C G T A C G T