Information for 2-GCAGGTCAGGGC (Motif 4)

A C T G A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G A G T C
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets19.0 +/- 0.0bp
Average Position of motif in Background43.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:1
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GCAGGTCAGGGC--
--AGGTCAAGGTCA
A C T G A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G A G T C A C G T A C G T
A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GCAGGTCAGGGC--
--AGGTCAAGGTCA
A C T G A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G A G T C A C G T A C G T
A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GCAGGTCAGGGC
--AGGTCA----
A C T G A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G A G T C
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCAGGTCAGGGC--
ACATGCCCGGGCAT
A C T G A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G A G T C A C G T A C G T
C T G A T A G C G C T A C G A T A T C G A G T C G A T C G A T C C T A G T C A G T C A G G T A C G C T A C A G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCAGGTCAGGGC
TRAGGTCA----
A C T G A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G A G T C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T

NR2C2(var.2)/MA1536.1/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCAGGTCAGGGC
-GAGGTCAT---
A C T G A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G A G T C
A C G T T C A G T C G A A C T G A C T G A C G T A G T C C T G A G C A T A C G T A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GCAGGTCAGGGC
GGGGCTYGKCTGGGA
A C G T A C G T A C G T A C T G A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G A G T C
C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCAGGTCAGGGC
ATCAAGGTCA----
A C G T A C G T A C T G A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G A G T C
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T

NR2C1/MA1535.1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCAGGTCAGGGC
CGAGGTCAC---
A C T G A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G A G T C
G T A C C T A G T C G A A C T G A C T G A C G T A T G C C T G A G A T C A C G T A C G T A C G T

RARB(var.3)/MA1552.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GCAGGTCAGGGC---
-AAGGTCATGACCTT
A C T G A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G A G T C A C G T A C G T A C G T
A C G T C T G A T C G A C T A G C A T G A C G T A G T C C T G A G A C T T C A G T C G A G T A C T G A C A G C T G A C T