Information for 3-CCCATTGT (Motif 38)

A G T C A G T C A G T C C G T A A C G T A C G T A C T G A C G T
Reverse Opposite:
C G T A A G T C C G T A C G T A A C G T A C T G A C T G A C T G
p-value:1e-2
log p-value:-5.964e+00
Information Content per bp:1.530
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif55.56%
Number of Background Sequences with motif12003.7
Percentage of Background Sequences with motif12.60%
Average Position of motif in Targets86.3 +/- 69.4bp
Average Position of motif in Background99.1 +/- 86.1bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0132.1_Hbp1_2/Jaspar

Match Rank:1
Score:0.93
Offset:-4
Orientation:forward strand
Alignment:----CCCATTGT-----
TGTTCCCATTGTGTACT
A C G T A C G T A C G T A C G T A G T C A G T C A G T C C G T A A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

SOX13/MA1120.1/Jaspar

Match Rank:2
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-CCCATTGT--
NNCCATTGTNN
A C G T A G T C A G T C A G T C C G T A A C G T A C G T A C T G A C G T A C G T A C G T
C G A T A C T G A G T C G A T C C G T A G A C T C G A T T C A G G A C T A G C T G A C T

SOX2/MA0143.4/Jaspar

Match Rank:3
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-CCCATTGT--
NNCCATTGTNN
A C G T A G T C A G T C A G T C C G T A A C G T A C G T A C T G A C G T A C G T A C G T
C G A T G C A T G A T C G A T C G C T A A G C T C G A T C T A G C G A T G C A T G C A T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.88
Offset:1
Orientation:forward strand
Alignment:CCCATTGT---
-CCATTGTTYB
A G T C A G T C A G T C C G T A A C G T A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.88
Offset:0
Orientation:forward strand
Alignment:CCCATTGT--
NCCATTGTTC
A G T C A G T C A G T C C G T A A C G T A C G T A C T G A C G T A C G T A C G T
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer

Match Rank:6
Score:0.87
Offset:1
Orientation:reverse strand
Alignment:CCCATTGT-----
-CCATTGTTYYBB
A G T C A G T C A G T C C G T A A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A T G C G A T C C G T A A C G T A C G T A C T G A C G T A G C T A G C T A G T C A T C G A C T G

SOX9/MA0077.1/Jaspar

Match Rank:7
Score:0.85
Offset:1
Orientation:forward strand
Alignment:CCCATTGT--
-CCATTGTTC
A G T C A G T C A G T C C G T A A C G T A C G T A C T G A C G T A C G T A C G T
A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.85
Offset:1
Orientation:forward strand
Alignment:CCCATTGT-
-CCWTTGTY
A G T C A G T C A G T C C G T A A C G T A C G T A C T G A C G T A C G T
A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:9
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:CCCATTGT--
NCCATTGTTY
A G T C A G T C A G T C C G T A A C G T A C G T A C T G A C G T A C G T A C G T
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer

Match Rank:10
Score:0.83
Offset:0
Orientation:forward strand
Alignment:CCCATTGT----
BCCWTTGTBYKV
A G T C A G T C A G T C C G T A A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A T G C G A C T A C T G T A C G