Information for 2-AGTTAATATGAT (Motif 3)

C G T A A C T G A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C T G C G T A A C G T
Reverse Opposite:
C G T A A C G T A G T C C G T A A C G T C G T A A C G T A C G T C G T A C G T A A G T C A C G T
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets37.0 +/- 0.0bp
Average Position of motif in Background8.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PHOX2B/MA0681.2/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:AGTTAATATGAT----
NNATAATTTGATTANN
C G T A A C T G A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
C G T A C G A T G C T A G C A T C G T A G C T A G C A T C G A T C G A T C T A G C G T A G C A T G C A T C G T A C G T A G C T A

Arid3b/MA0601.1/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AGTTAATATGAT
NTAATTAATAT---
A C G T A C G T C G T A A C T G A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C T G C G T A A C G T
A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T A C G T A C G T A C G T

Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AGTTAATATGAT--
--GTAATCDGATTA
C G T A A C T G A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C T G C G T A A C G T A C G T A C G T
A C G T A C G T C A T G C G A T T C G A C T G A G C A T A G T C C A T G T C A G C T G A A C G T G A C T C G T A

PH0040.1_Hmbox1/Jaspar

Match Rank:4
Score:0.61
Offset:-7
Orientation:forward strand
Alignment:-------AGTTAATATGAT
GAAAACTAGTTAACATC--
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C T G C G T A A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C A C G T A C G T

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AGTTAATATGAT--
--YTAATYNRATTA
C G T A A C T G A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C T G C G T A A C G T A C G T A C G T
A C G T A C G T G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A

FOXB1/MA0845.1/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AGTTAATATGAT
TATGTAAATAT---
A C G T A C G T C G T A A C T G A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C T G C G T A A C G T
G C A T C T G A C G A T C T A G G A C T T G C A G C T A C G T A A G C T C T G A G C A T A C G T A C G T A C G T

FOXC1/MA0032.2/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AGTTAATATGAT
TATGTAAATAT---
A C G T A C G T C G T A A C T G A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C T G C G T A A C G T
G C A T C T G A C G A T T C A G G C A T G T C A G T C A C T G A A G C T C T G A G C A T A C G T A C G T A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:AGTTAATATGAT--
--GWAAYHTGABMC
C G T A A C T G A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:9
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:AGTTAATATGAT---
---TAATTNVATTAN
C G T A A C T G A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T C T G A C G T A A G C T A C G T G T A C T C G A C T G A A C G T G A C T C G T A C A T G

PB0081.1_Tcf1_1/Jaspar

Match Rank:10
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----AGTTAATATGAT
NNNTTAGTTAACTNANN
A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C T G C G T A A C G T
G A C T C A G T G A C T A G C T G A C T C T G A T A C G G A C T C G A T C G T A C G T A A G T C A G C T C T G A T C G A C T A G A C G T