Information for 11-GTGGGTTGGCCA (Motif 11)

A C T G A C G T A C T G A C T G A C T G A C G T A C G T A C T G A C T G A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G A G T C A G T C C G T A C G T A A G T C A G T C A G T C C G T A A G T C
p-value:1e-4
log p-value:-1.034e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.0 +/- 0.0bp
Average Position of motif in Background120.6 +/- 33.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GTGGGTTGGCCA
CGTGGGTGGTCC-
A C G T A C T G A C G T A C T G A C T G A C T G A C G T A C G T A C T G A C T G A G T C A G T C C G T A
A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C A C G T

GLI3/MA1491.1/Jaspar

Match Rank:2
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GTGGGTTGGCCA
CGNCGTGGGTGGTCN-
A C G T A C G T A C G T A C G T A C T G A C G T A C T G A C T G A C T G A C G T A C G T A C T G A C T G A G T C A G T C C G T A
T A G C C T A G G C T A A T G C C A T G A G C T C A T G C A T G A T C G C A G T A C T G A C T G A C G T T G A C A C G T A C G T

GLI2/MA0734.2/Jaspar

Match Rank:3
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GTGGGTTGGCCA
CGNCGTGGGTGGTCN-
A C G T A C G T A C G T A C G T A C T G A C G T A C T G A C T G A C T G A C G T A C G T A C T G A C T G A G T C A G T C C G T A
T A G C C T A G G C T A A T G C C A T G G A C T C A T G A C T G A C T G C A G T C T A G C T A G A C G T T G A C A C G T A C G T

ZNF682/MA1599.1/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GTGGGTTGGCCA-
NNAGGGGCTTGGCCNN
A C G T A C G T A C G T A C T G A C G T A C T G A C T G A C T G A C G T A C G T A C T G A C T G A G T C A G T C C G T A A C G T
T C G A A G C T G C T A C A T G A T C G T C A G C T A G T A G C A C G T A C G T T C A G A T C G A G T C G A T C A G T C T C A G

Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GTGGGTTGGCCA
YSTGGGTGGTCT-
A C G T A C T G A C G T A C T G A C T G A C T G A C G T A C G T A C T G A C T G A G T C A G T C C G T A
A G T C A T C G G C A T C A T G A C T G A T C G C G A T C T A G A C T G A G C T T G A C G A C T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GTGGGTTGGCCA---
NGTAGGTTGGCATNNN
A C G T A C T G A C G T A C T G A C T G A C T G A C G T A C G T A C T G A C T G A G T C A G T C C G T A A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

ZNF449/MA1656.1/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GTGGGTTGGCCA---
-NNGGTTGGGCTTNN
A C T G A C G T A C T G A C T G A C T G A C G T A C G T A C T G A C T G A G T C A G T C C G T A A C G T A C G T A C G T
A C G T A T G C C A G T C A T G A C T G G A C T C G A T C A T G A C T G A T C G A G T C C G A T A C G T A C T G C A T G

PB0098.1_Zfp410_1/Jaspar

Match Rank:8
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GTGGGTTGGCCA-
TATTATGGGATGGATAA
A C G T A C G T A C G T A C G T A C T G A C G T A C T G A C T G A C T G A C G T A C G T A C T G A C T G A G T C A G T C C G T A A C G T
C G A T T C G A C A G T C G A T G T C A C G A T C A T G C A T G C A T G C T G A C A G T C T A G A C T G T G C A C A G T C G T A T G C A

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GTGGGTTGGCCA-
----NTTGGCANN
A C T G A C G T A C T G A C T G A C T G A C G T A C G T A C T G A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GTGGGTTGGCCA
NNTGTGGATTSS---
A C G T A C G T A C G T A C T G A C G T A C T G A C T G A C T G A C G T A C G T A C T G A C T G A G T C A G T C C G T A
C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G A C G T A C G T A C G T