Information for 10-CCTAGGTAAAGC (Motif 11)

A G T C A G T C A C G T C G T A A C T G A C T G A C G T C G T A C G T A C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T A C G T A C G T C G T A A G T C A G T C A C G T C G T A A C T G A C T G
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets153.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HMBOX1/MA0895.1/Jaspar

Match Rank:1
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCTAGGTAAAGC
ACTAGTTAAC--
A G T C A G T C A C G T C G T A A C T G A C T G A C G T C G T A C G T A C G T A A C T G A G T C
T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C A C G T A C G T

FOXD2/MA0847.2/Jaspar

Match Rank:2
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCTAGGTAAAGC-
GTTAAGTAAACAA
A G T C A G T C A C G T C G T A A C T G A C T G A C G T C G T A C G T A C G T A A C T G A G T C A C G T
T A C G G A C T G C A T T C G A G C T A T C A G G A C T G T C A T G C A C G T A A G T C C G T A G C T A

RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:3
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CCTAGGTAAAGC---
---AGGTCAAGGTCA
A G T C A G T C A C G T C G T A A C T G A C T G A C G T C G T A C G T A C G T A A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

PH0040.1_Hmbox1/Jaspar

Match Rank:4
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CCTAGGTAAAGC-
GAAAACTAGTTAACATC
A C G T A C G T A C G T A C G T A G T C A G T C A C G T C G T A A C T G A C T G A C G T C G T A C G T A C G T A A C T G A G T C A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

GMEB2/MA0862.1/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CCTAGGTAAAGC
-TTACGTAA---
A G T C A G T C A C G T C G T A A C T G A C T G A C G T C G T A C G T A C G T A A C T G A G T C
A C G T A C G T C A G T C T G A G T A C A T C G A G C T T G C A T G C A A C G T A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CCTAGGTAAAGC-
--CAGGTAAGTAT
A G T C A G T C A C G T C G T A A C T G A C T G A C G T C G T A C G T A C G T A A C T G A G T C A C G T
A C G T A C G T T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:7
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CCTAGGTAAAGC
TATAAGTAGGTCAA--
A C G T A C G T A C G T A C G T A G T C A G T C A C G T C G T A A C T G A C T G A C G T C G T A C G T A C G T A A C T G A G T C
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T A C G T

ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer

Match Rank:8
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CCTAGGTAAAGC--
----GGAACAGCCG
A G T C A G T C A C G T C G T A A C T G A C T G A C G T C G T A C G T A C G T A A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T C T A G A C T G T G C A G T C A A T G C C G T A A T C G A T G C A G T C C T A G

PH0168.1_Hnf1b/Jaspar

Match Rank:9
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CCTAGGTAAAGC--
ANNNCTAGTTAACNGNN
A C G T A C G T A C G T A G T C A G T C A C G T C G T A A C T G A C T G A C G T C G T A C G T A C G T A A C T G A G T C A C G T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CCTAGGTAAAGC---
NCWRWGTAAACANSV
A G T C A G T C A C G T C G T A A C T G A C T G A C G T C G T A C G T A C G T A A C T G A G T C A C G T A C G T A C G T
T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G