Information for 3-GCGTTGCTAG (Motif 3)

A C T G A G T C A C T G A C G T A C G T A C T G A G T C A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A A C T G A G T C C G T A C G T A A G T C A C T G A G T C
p-value:1e-4
log p-value:-1.023e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.0 +/- 0.0bp
Average Position of motif in Background8.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:1
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-GCGTTGCTAG----
NCCGTTGCTANGNGN
A C G T A C T G A G T C A C T G A C G T A C G T A C T G A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

RFX7/MA1554.1/Jaspar

Match Rank:2
Score:0.79
Offset:1
Orientation:forward strand
Alignment:GCGTTGCTAG
-CGTTGCTAT
A C T G A G T C A C T G A C G T A C G T A C T G A G T C A C G T C G T A A C T G
A C G T A T G C A T C G A G C T A G C T C T A G A T G C A G C T C T G A G A C T

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-GCGTTGCTAG----
NNCGTTGCTATGGNN
A C G T A C T G A G T C A C T G A C G T A C G T A C T G A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

PB0054.1_Rfx3_1/Jaspar

Match Rank:4
Score:0.74
Offset:-5
Orientation:reverse strand
Alignment:-----GCGTTGCTAG--------
NTNNNNNGTTGCTANGGNNCANA
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C T G A C G T A C G T A C T G A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GCGTTGCTAG--
CTGTTGCTAGGS
A C T G A G T C A C T G A C G T A C G T A C T G A G T C A C G T C G T A A C T G A C G T A C G T
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:6
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GCGTTGCTAG------
-KGTTGCTAGGMAACA
A C T G A G T C A C T G A C G T A C G T A C T G A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

RFX1/MA0509.2/Jaspar

Match Rank:7
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCGTTGCTAG----
CTGTTGCTATGGCA
A C T G A G T C A C T G A C G T A C G T A C T G A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T
A G T C C A G T C T A G A G C T G A C T C T A G G A T C A G C T C T G A C A G T C T A G T C A G G T A C C T G A

RFX3/MA0798.2/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCGTTGCTAG----
CGGTTGCTATGGCA
A C T G A G T C A C T G A C G T A C G T A C T G A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T
A G T C A C T G C T A G A G C T G A C T C T A G G A T C G A C T T C G A C A G T C T A G T C A G G T A C C T G A

SP4/MA0685.1/Jaspar

Match Rank:9
Score:0.59
Offset:-7
Orientation:reverse strand
Alignment:-------GCGTTGCTAG
NAAGGGGGCGTGGCTTN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C T G A C G T A C G T A C T G A G T C A C G T C G T A A C T G
C T G A C T G A C G T A C T A G C A T G T C A G A C T G A T C G T G A C A C T G A C G T T C A G C A T G G A T C G A C T C G A T T C G A

SP1/MA0079.4/Jaspar

Match Rank:10
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----GCGTTGCTAG
NGTGGGCGTGGCTTN
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C T G A C G T A C G T A C T G A G T C A C G T C G T A A C T G
C T G A C T A G C A G T C T A G A C T G C T A G G A T C C T A G A C G T C T A G C A T G G A T C A G C T C G A T T C G A