Information for 2-TTCTCCTTGACT (Motif 3)

A C G T A C G T A G T C A C G T A G T C A G T C A C G T A C G T A C T G C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G A C G T A G T C C G T A C G T A A C T G A C T G C G T A A C T G C G T A C G T A
p-value:1e-4
log p-value:-1.027e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TTCTCCTTGACT-
-TGACCTTGACCT
A C G T A C G T A G T C A C G T A G T C A G T C A C G T A C G T A C T G C G T A A G T C A C G T A C G T
A C G T G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:2
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TTCTCCTTGACT--
NAGTTTCABTHTGACTNW
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C A G T C A C G T A C G T A C T G C G T A A G T C A C G T A C G T A C G T
A G T C C T G A A T C G A G C T A G C T G A C T A G T C G C T A A C G T C G A T G C A T C G A T A T C G C G T A T A G C G C A T A T G C C G T A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TTCTCCTTGACT
-TGACCTTGAV-
A C G T A C G T A G T C A C G T A G T C A G T C A C G T A C G T A C T G C G T A A G T C A C G T
A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:4
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:TTCTCCTTGACT---
------TTGACTTTT
A C G T A C G T A G T C A C G T A G T C A G T C A C G T A C G T A C T G C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T

IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TTCTCCTTGACT-
CTTTCANTATGACTV
A C G T A C G T A C G T A C G T A G T C A C G T A G T C A G T C A C G T A C G T A C T G C G T A A G T C A C G T A C G T
A T G C G A C T A G C T A G C T A G T C G C T A C A G T C G A T G C T A A C G T A C T G G C T A T A G C G C A T T G A C

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:6
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TTCTCCTTGACT
-TGACCTTGAN-
A C G T A C G T A G T C A C G T A G T C A G T C A C G T A C G T A C T G C G T A A G T C A C G T
A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TTCTCCTTGACT-
-TGACCTTGACCT
A C G T A C G T A G T C A C G T A G T C A G T C A C G T A C G T A C T G C G T A A G T C A C G T A C G T
A C G T G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TTCTCCTTGACT-------
TTTMCGCTTSABTGAACACN
A C G T A C G T A C G T A G T C A C G T A G T C A G T C A C G T A C G T A C T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T C A G T G A C T T G A C G A T C T C A G A T G C G C A T A G C T T A C G C T G A A T C G G A C T C T A G T G C A T C G A A G T C G C T A A T G C T C G A

NR5A1/MA1540.1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TTCTCCTTGACT
NTGACCTTGAN-
A C G T A C G T A G T C A C G T A G T C A G T C A C G T A C G T A C T G C G T A A G T C A C G T
C T A G G A C T T C A G C T G A A G T C G T A C G C A T G A C T T A C G C T G A T G A C A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TTCTCCTTGACT
BNTGDCCTTG---
A C G T A C G T A C G T A G T C A C G T A G T C A G T C A C G T A C G T A C T G C G T A A G T C A C G T
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T