Information for 23-TTGAATAGTGTG (Motif 21)

A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G A C G T A C T G A C G T A C T G
Reverse Opposite:
A G T C C G T A A G T C C G T A A G T C A C G T C G T A A C G T A C G T A G T C C G T A C G T A
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets178.5 +/- 8.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0068.1_Sox1_1/Jaspar

Match Rank:1
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TTGAATAGTGTG
NNNTATTGAATTGNNN-
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G A C G T A C T G A C G T A C T G
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TTGAATAGTGTG
ATGAATATTC--
A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G A C G T A C T G A C G T A C T G
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TTGAATAGTGTG
ATTTGAATT-----
A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G A C G T A C T G A C G T A C T G
C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T A C G T A C G T A C G T

ZSCAN4/MA1155.1/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TTGAATAGTGTG--
TTTTCAGTGTGTGCA
A C G T A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G A C G T A C T G A C G T A C T G A C G T A C G T
G A C T G A C T C A G T G C A T T G A C T G C A C A T G A C G T C T A G G A C T A C T G C G A T A T C G A G T C C T G A

PB0208.1_Zscan4_2/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TTGAATAGTGTG-----
-NNNNTTGTGTGCTTNN
A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G A C G T A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer

Match Rank:6
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---TTGAATAGTGTG
GATTTGCATA-----
A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G A C G T A C T G A C G T A C T G
A C T G G T C A A C G T G C A T C G A T T C A G G T A C G T C A A C G T C T G A A C G T A C G T A C G T A C G T A C G T

Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TTGAATAGTGTG
TTGATTRGRTTA
A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G A C G T A C T G A C G T A C T G
G A C T C G A T A C T G C G T A A C G T A C G T C T A G C T A G C T A G A G C T A G C T C G T A

ZNF143/MA0088.2/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--TTGAATAGTGTG--
CAATGCATTGTGGGTA
A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G A C G T A C T G A C G T A C T G A C G T A C G T
G A T C C T G A C T G A C A G T A C T G A G T C G C T A G A C T A G C T T C A G G A C T A C T G A C T G A C T G G C A T T C G A

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:TTGAATAGTGTG--
----ATGGGGTGAT
A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G A C G T A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T T C G A A G C T C A T G A C T G A T C G T A C G G A C T A T C G C G T A A G C T

PB0066.1_Sox17_1/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--TTGAATAGTGTG-
NNATNAATTGTTTNN
A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G A C G T A C T G A C G T A C T G A C G T
G C A T C T A G C G A T C G A T A G C T G C T A C G T A G C A T C G A T T C A G C G A T A C G T G A C T G C T A A C G T