Information for 2-CCTGTCGATC (Motif 9)

A G T C A G T C A C G T A C T G A C G T A G T C A C T G C G T A A C G T A G T C
Reverse Opposite:
A C T G C G T A A C G T A G T C A C T G C G T A A G T C C G T A A C T G A C T G
p-value:1e-3
log p-value:-9.171e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets196.0 +/- 0.0bp
Average Position of motif in Background125.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:CCTGTCGATC--
NCTGTCAATCAN
A G T C A G T C A C G T A C T G A C G T A G T C A C T G C G T A A C G T A G T C A C G T A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:2
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CCTGTCGATC-
GSCTGTCACTCA
A C G T A G T C A G T C A C G T A C T G A C G T A G T C A C T G C G T A A C G T A G T C A C G T
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

PBX3/MA1114.1/Jaspar

Match Rank:3
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---CCTGTCGATC----
NNNCCTGTCACTCANNN
A C G T A C G T A C G T A G T C A G T C A C G T A C T G A C G T A G T C A C T G C G T A A C G T A G T C A C G T A C G T A C G T A C G T
T A G C A G T C T A C G A T G C T G A C G A C T A T C G G A C T A T G C G T C A T G A C G C A T A G T C G C T A T G A C T G A C A T G C

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CCTGTCGATC--
SCTGTCAVTCAV
A G T C A G T C A C G T A C T G A C G T A G T C A C T G C G T A A C G T A G T C A C G T A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

PH0141.1_Pknox2/Jaspar

Match Rank:5
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----CCTGTCGATC-
AAGCACCTGTCAATAT
A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C T G A C G T A G T C A C T G C G T A A C G T A G T C A C G T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T

PH0140.1_Pknox1/Jaspar

Match Rank:6
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----CCTGTCGATC-
AAAGACCTGTCAATCC
A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C T G A C G T A G T C A C T G C G T A A C G T A G T C A C G T
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C

PKNOX1/MA0782.2/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CCTGTCGATC---
NNGCTGTCACTCANN
A C G T A C G T A G T C A G T C A C G T A C T G A C G T A G T C A C T G C G T A A C G T A G T C A C G T A C G T A C G T
G A C T T C G A A T C G T G A C G C A T C T A G G A C T T A G C G C T A T G A C G A C T A G T C G C T A C G T A G C T A

MEIS2/MA0774.1/Jaspar

Match Rank:8
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CCTGTCGATC
GCTGTCAA--
A G T C A G T C A C G T A C T G A C G T A G T C A C T G C G T A A C G T A G T C
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T

SCRT1/MA0743.2/Jaspar

Match Rank:9
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----CCTGTCGATC-
NNCCACCTGTTGAANN
A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C T G A C G T A G T C A C T G C G T A A C G T A G T C A C G T
C G T A T C G A G T A C G T A C C T G A G A T C G A T C C G A T T A C G G A C T C A G T C T A G T G C A G C T A G A C T G C A T

SCRT2/MA0744.2/Jaspar

Match Rank:10
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----CCTGTCGATC-
NNNCACCTGTTGCTNN
A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C T G A C G T A G T C A C T G C G T A A C G T A G T C A C G T
C G T A C T G A G T A C G T A C C T G A G T A C G A T C C G A T A T C G G A C T C A G T C T A G T G A C G C A T A G C T G A C T