Information for 20-CAGCCTTTCACC (Motif 20)

A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C C G T A A G T C A G T C
Reverse Opposite:
A C T G A C T G A C G T A C T G C G T A C G T A C G T A A C T G A C T G A G T C A C G T A C T G
p-value:1e-4
log p-value:-9.884e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets12.0 +/- 0.0bp
Average Position of motif in Background193.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CAGCCTTTCACC-
CTGTCTGTCACCT
A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C C G T A A G T C A G T C A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

THRB/MA1574.1/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCTTTCACC--
NTGACCTTTGACCCC
A C G T A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C C G T A A G T C A G T C A C G T A C G T
T C G A G A C T T C A G T G C A G T A C G T A C A G C T G A C T A G C T T C A G T G C A G T A C G T A C A G T C A G T C

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CAGCCTTTCACC---
---ACTTTCACTTTC
A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C C G T A A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T G A C G C A T A G C T C A G T G A T C G C T A G A T C G A C T A C G T G C A T A G T C

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:4
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CAGCCTTTCACC---
---SCTGTCARCACC
A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C C G T A A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CAGCCTTTCACC-
-TGTCTGDCACCT
A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C C G T A A G T C A G T C A C G T
A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

PPARA::RXRA/MA1148.1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCTTTCACC-----
NTGACCTTTGACCTANAT
A C G T A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T
T G C A G A C T T C A G T G C A G T A C A G T C A G C T G A C T G A C T T C A G T G C A G A T C G T A C A G C T T G C A A G T C C G T A C G A T

PRDM1/MA0508.3/Jaspar

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CAGCCTTTCACC-
--TTCTTTCTCTT
A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C C G T A A G T C A G T C A C G T
A C G T A C G T G A C T G C A T G T A C C G A T G C A T C G A T G T A C C G A T G T A C G A C T G A C T

NR2F1(var.2)/MA1537.1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCTTTCACC--
NTGACCTTTGACCTN
A C G T A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C C G T A A G T C A G T C A C G T A C G T
C A T G G A C T T C A G T G C A G T A C G T A C A G C T G A C T G A C T T C A G T G C A G T A C G T A C A G C T A G T C

PPARD/MA1550.1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCTTTCACC---
NTGACCTTTGACCCCN
A C G T A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C C G T A A G T C A G T C A C G T A C G T A C G T
C A G T G A C T T C A G T G C A G T A C G T A C A G C T G A C T A G C T T C A G T G C A G T A C G A T C A G T C A G T C C G A T

LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer

Match Rank:10
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CAGCCTTTCACC-
---CCTTTGATST
A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C C G T A A G T C A G T C A C G T
A C G T A C G T A C G T A T G C A G T C A G C T A G C T A C G T A T C G C G T A C G A T T A G C G A C T