Information for 1-AATGTGACCTAC (Motif 1)

C G T A C G T A A C G T A C T G A C G T A C T G C G T A A G T C A G T C A C G T C G T A A G T C
Reverse Opposite:
A C T G A C G T C G T A A C T G A C T G A C G T A G T C C G T A A G T C C G T A A C G T A C G T
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets26.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:AATGTGACCTAC
---GTGACCTT-
C G T A C G T A A C G T A C T G A C G T A C T G C G T A A G T C A G T C A C G T C G T A A G T C
A C G T A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:2
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:AATGTGACCTAC-----
---TTGACCTANTTATN
C G T A C G T A A C G T A C T G A C G T A C T G C G T A A G T C A G T C A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:AATGTGACCTAC
----TGACCT--
C G T A C G T A A C G T A C T G A C G T A C T G C G T A A G T C A G T C A C G T C G T A A G T C
A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:AATGTGACCTAC--
----TGACCTARTT
C G T A C G T A A C G T A C T G A C G T A C T G C G T A A G T C A G T C A C G T C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:AATGTGACCTAC--
----TGACCTARTT
C G T A C G T A A C G T A C T G A C G T A C T G C G T A A G T C A G T C A C G T C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORB/MA1150.1/Jaspar

Match Rank:6
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:AATGTGACCTAC--
---NTGACCTAATT
C G T A C G T A A C G T A C T G A C G T A C T G C G T A A G T C A G T C A C G T C G T A A G T C A C G T A C G T
A C G T A C G T A C G T C T A G G A C T C T A G T C G A G A T C T G A C G A C T T G C A G C T A C G A T G C A T

RORC/MA1151.1/Jaspar

Match Rank:7
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:AATGTGACCTAC----
----TGACCTANTTAN
C G T A C G T A A C G T A C T G A C G T A C T G C G T A A G T C A G T C A C G T C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T T C A G T G C A G A T C G T A C A G C T T G C A T A G C G C A T C G A T G C T A G A C T

ESR2/MA0258.2/Jaspar

Match Rank:8
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----AATGTGACCTAC
AGGNCANNGTGACCT--
A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C T G A C G T A C T G C G T A A G T C A G T C A C G T C G T A A G T C
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T A C G T A C G T

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:9
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:AATGTGACCTAC---
---BTGACCTAVTTW
C G T A C G T A A C G T A C T G A C G T A C T G C G T A A G T C A G T C A C G T C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A G T C A C G T T C A G T C G A A G T C A G T C A G C T C T G A T C A G C G A T G C A T G C A T

RORA/MA0071.1/Jaspar

Match Rank:10
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:AATGTGACCTAC--
----TGACCTTGAT
C G T A C G T A A C G T A C T G A C G T A C T G C G T A A G T C A G T C A C G T C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T