Information for 15-TGGTCTGCATGC (Motif 16)

A C G T A C T G A C T G A C G T A G T C A C G T A C T G A G T C C G T A A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C C G T A A C G T A C T G A G T C C G T A A C T G C G T A A G T C A G T C C G T A
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets86.0 +/- 0.0bp
Average Position of motif in Background74.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU5F1/MA1115.1/Jaspar

Match Rank:1
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TGGTCTGCATGC
-NATTTGCATNN
A C G T A C T G A C T G A C G T A G T C A C G T A C T G A G T C C G T A A C G T A C T G A G T C
A C G T G T C A C G T A C G A T G A C T C G A T T C A G G A T C C T G A A G C T C G T A G C A T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TGGTCTGCATGC
TWGTCTGV----
A C G T A C T G A C T G A C G T A G T C A C G T A C T G A G T C C G T A A C G T A C T G A G T C
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TGGTCTGCATGC
VBSYGTCTGG----
A C G T A C G T A C G T A C T G A C T G A C G T A G T C A C G T A C T G A G T C C G T A A C G T A C T G A G T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TGGTCTGCATGC
CTGTCTGG----
A C G T A C T G A C T G A C G T A G T C A C G T A C T G A G T C C G T A A C G T A C T G A G T C
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:5
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:TGGTCTGCATGC--
----TTGCGTGCVA
A C G T A C T G A C T G A C G T A G T C A C G T A C T G A G T C C G T A A C G T A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--TGGTCTGCATGC
TWVGGTCCGC----
A C G T A C G T A C G T A C T G A C T G A C G T A G T C A C G T A C T G A G T C C G T A A C G T A C T G A G T C
A G C T C G A T T A C G A T C G A T C G C A G T A G T C A G T C A C T G T A G C A C G T A C G T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TGGTCTGCATGC
BTVATTWGCATA-
A C G T A C G T A C T G A C T G A C G T A G T C A C G T A C T G A G T C C G T A A C G T A C T G A G T C
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TGGTCTGCATGC
TTCATTTGCATAT
A C G T A C G T A C T G A C T G A C G T A G T C A C G T A C T G A G T C C G T A A C G T A C T G A G T C
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

NRF(NRF)/Promoter/Homer

Match Rank:9
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TGGTCTGCATGC--
--GTGCGCATGCGC
A C G T A C T G A C T G A C G T A G T C A C G T A C T G A G T C C G T A A C G T A C T G A G T C A C G T A C G T
A C G T A C G T A T C G A G C T A C T G A G T C A C T G A G T C C G T A A C G T A C T G A G T C A C T G A G T C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:TGGTCTGCATGC
-DCTCAGCAGG-
A C G T A C T G A C T G A C G T A G T C A C G T A C T G A G T C C G T A A C G T A C T G A G T C
A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T