Information for 17-TCGCCATGGATG (Motif 19)

A C G T A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C T G
Reverse Opposite:
A G T C C G T A A C G T A G T C A G T C C G T A A C G T A C T G A C T G A G T C A C T G C G T A
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets72.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.2/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TCGCCATGGATG
CGCCGCCATNN---
A C G T A C G T A C G T A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C T G
A T G C C A T G A T G C T A G C C T A G A G T C A T G C T C G A A G C T A T G C C A G T A C G T A C G T A C G T

RFX3/MA0798.2/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TCGCCATGGATG
CGGTTGCTATGGCA-
A C G T A C G T A C G T A C G T A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C T G
A G T C A C T G C T A G A G C T G A C T C T A G G A T C G A C T T C G A C A G T C T A G T C A G G T A C C T G A A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TCGCCATGGATG
NGTTGCCATGGCAA
A C G T A C G T A C G T A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C T G
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

RFX1/MA0509.2/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---TCGCCATGGATG
CTGTTGCTATGGCA-
A C G T A C G T A C G T A C G T A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C T G
A G T C C A G T C T A G A G C T G A C T C T A G G A T C A G C T C T G A C A G T C T A G T C A G G T A C C T G A A C G T

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:5
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--TCGCCATGGATG
NGTCCCNNGGGA--
A C G T A C G T A C G T A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C T G
C T A G A T C G G A C T A G T C A G T C A G T C G A C T C T G A A C T G C T A G A C T G C T G A A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--TCGCCATGGATG
GGTTGCCATGGCAA
A C G T A C G T A C G T A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C T G
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

PB0178.1_Sox8_2/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TCGCCATGGATG-
NNTNTCATGAATGT
A C G T A C G T A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C T G A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

RFX4/MA0799.1/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TCGCCATGGATG--
CGTTGCCATGGCAACN
A C G T A C G T A C G T A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C T G A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:9
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TCGCCATGGATG-----
--GTCATGCHTGRCTGS
A C G T A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TCGCCATGGATG--
GTTGCCATGGCAACM
A C G T A C G T A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C T G A C G T A C G T
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C