Information for 23-GGAGTCATTAGA (Motif 22)

A C T G A C T G C G T A A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T C G T A C G T A A C G T A C T G C G T A A G T C A C G T A G T C A G T C
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets180.0 +/- 0.0bp
Average Position of motif in Background120.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA4/MA1496.1/Jaspar

Match Rank:1
Score:0.71
Offset:3
Orientation:forward strand
Alignment:GGAGTCATTAGA
---GTCATTAG-
A C T G A C T G C G T A A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C T G C G T A
A C G T A C G T A C G T T C A G A G C T T G A C C T G A A C G T A G C T T C G A T C A G A C G T

HOXB4/MA1499.1/Jaspar

Match Rank:2
Score:0.71
Offset:3
Orientation:forward strand
Alignment:GGAGTCATTAGA
---ATCATTAG-
A C T G A C T G C G T A A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C T G C G T A
A C G T A C G T A C G T T C G A A G C T G T A C C T G A A C G T A C G T C T G A T C A G A C G T

HOXD3/MA0912.2/Jaspar

Match Rank:3
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:GGAGTCATTAGA
---GTAATTAG-
A C T G A C T G C G T A A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C T G C G T A
A C G T A C G T A C G T T A C G A G C T G T C A C G T A A C G T A C G T C T G A T C A G A C G T

HOXC4/MA1504.1/Jaspar

Match Rank:4
Score:0.69
Offset:3
Orientation:forward strand
Alignment:GGAGTCATTAGA
---GTCATTAA-
A C T G A C T G C G T A A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C T G C G T A
A C G T A C G T A C G T T C A G G A C T G T A C C T G A A C G T A C G T C T G A T C G A A C G T

HOXD4/MA1507.1/Jaspar

Match Rank:5
Score:0.69
Offset:3
Orientation:forward strand
Alignment:GGAGTCATTAGA
---ATCATTAG-
A C T G A C T G C G T A A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C T G C G T A
A C G T A C G T A C G T T C G A A G C T G T A C C T G A A C G T A C G T C T G A C T A G A C G T

GSX2/MA0893.2/Jaspar

Match Rank:6
Score:0.68
Offset:3
Orientation:forward strand
Alignment:GGAGTCATTAGA
---GTAATTAG-
A C T G A C T G C G T A A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C T G C G T A
A C G T A C G T A C G T T A C G G A C T T G C A C T G A A G C T A C G T C T G A C T A G A C G T

NKX6-3/MA1530.1/Jaspar

Match Rank:7
Score:0.67
Offset:3
Orientation:forward strand
Alignment:GGAGTCATTAGA
---CTCATTAAA
A C T G A C T G C G T A A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C T G C G T A
A C G T A C G T A C G T T A G C A G C T A G T C C G T A A C G T A G C T C T G A G C T A G C T A

HOXA2/MA0900.2/Jaspar

Match Rank:8
Score:0.67
Offset:3
Orientation:forward strand
Alignment:GGAGTCATTAGA
---GTAATTAG-
A C T G A C T G C G T A A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C T G C G T A
A C G T A C G T A C G T T A C G A G C T T G C A C G T A A C G T A C G T C T G A T A C G A C G T

HOXB3/MA0903.1/Jaspar

Match Rank:9
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GGAGTCATTAGA
--ACTAATTAGC
A C T G A C T G C G T A A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C T G C G T A
A C G T A C G T C T G A T A G C G A C T T G C A T C G A A G C T G A C T G C T A T C A G T G A C

VAX2/MA0723.1/Jaspar

Match Rank:10
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:GGAGTCATTAGA
---NTAATTAG-
A C T G A C T G C G T A A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C T G C G T A
A C G T A C G T A C G T T C A G G A C T G T C A G C T A C G A T C A G T C T G A T C A G A C G T