Information for 8-GTGGTTTTTATG (Motif 9)

A C T G A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G
Reverse Opposite:
A G T C C G T A A C G T C G T A C G T A C G T A C G T A C G T A A G T C A G T C C G T A A G T C
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets117.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0064.1_Hoxb9/Jaspar

Match Rank:1
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GTGGTTTTTATG-----
-NGANTTTTATGGCTCN
A C T G A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:2
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---GTGGTTTTTATG
NNTGTGGTTT-----
A C G T A C G T A C G T A C T G A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G
A C G T G A C T C A G T A C T G G A C T A C T G A C T G A G C T A G C T C G A T A C G T A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:3
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:GTGGTTTTTATG--
----NTTTTATGAC
A C T G A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.65
Offset:5
Orientation:forward strand
Alignment:GTGGTTTTTATG---
-----TTTTATGGCM
A C T G A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:GTGGTTTTTATG---
-----TTTTATGGCB
A C T G A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C G A T G C A T G A C T G C T A A G C T C A T G C T A G A T G C A G T C

HOXA10/MA0899.1/Jaspar

Match Rank:6
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:GTGGTTTTTATG---
----NTTTTATTACN
A C T G A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:7
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GTGGTTTTTATG
CTGTGGTTTN----
A C G T A C G T A C T G A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G
G A T C A C G T A C T G A G C T A C T G A C T G A G C T A G C T C G A T A T C G A C G T A C G T A C G T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GTGGTTTTTATG-
NNNNNNCTTTTATAN
A C G T A C G T A C T G A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

TBP/MA0108.2/Jaspar

Match Rank:9
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GTGGTTTTTATG-
NNNNNNCTTTTATAN
A C G T A C G T A C T G A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:GTGGTTTTTATG---
-----TTTTATTRGN
A C T G A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C G T G C A T C G T A G A C T C A G T C T A G A T C G G A T C