Information for 20-AGAATTAGATTC (Motif 21)

C G T A A C T G C G T A C G T A A C G T A C G T C G T A A C T G C G T A A C G T A C G T A G T C
Reverse Opposite:
A C T G C G T A C G T A A C G T A G T C A C G T C G T A C G T A A C G T A C G T A G T C A C G T
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets156.0 +/- 0.0bp
Average Position of motif in Background80.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PHOX2B/MA0681.2/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AGAATTAGATTC--
NNATAATTTGATTANN
A C G T A C G T C G T A A C T G C G T A C G T A A C G T A C G T C G T A A C T G C G T A A C G T A C G T A G T C A C G T A C G T
C G T A C G A T G C T A G C A T C G T A G C T A G C A T C G A T C G A T C T A G C G T A G C A T G C A T C G T A C G T A G C T A

PHOX2A/MA0713.1/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AGAATTAGATTC
-TAATTAAATTA
C G T A A C T G C G T A C G T A A C G T A C G T C G T A A C T G C G T A A C G T A C G T A G T C
A C G T G C A T C G T A T C G A A G C T A G C T C T G A T C G A C T G A G A C T G A C T C G T A

PROP1/MA0715.1/Jaspar

Match Rank:3
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AGAATTAGATTC
-TAATTAAATTA
C G T A A C T G C G T A C G T A A C G T A C G T C G T A A C T G C G T A A C G T A C G T A G T C
A C G T G C A T C T G A C G T A G A C T C A G T G C T A C T G A C G T A A G C T C G A T C G T A

PB0169.1_Sox15_2/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AGAATTAGATTC--
TNGAATTTCATTNAN
A C G T C G T A A C T G C G T A C G T A A C G T A C G T C G T A A C T G C G T A A C G T A C G T A G T C A C G T A C G T
A G C T A T G C C T A G C T G A G T C A G A C T C A G T G C A T T G A C C T G A C A G T G A C T A G T C T G C A T G C A

TLX2/MA1577.1/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGAATTAGATTC
CTAATTAG----
C G T A A C T G C G T A C G T A A C G T A C G T C G T A A C T G C G T A A C G T A C G T A G T C
A G T C G A C T C T G A C G T A A C G T A C G T C G T A T C A G A C G T A C G T A C G T A C G T

VSX1/MA0725.1/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGAATTAGATTC
NTAATTAG----
C G T A A C T G C G T A C G T A A C G T A C G T C G T A A C T G C G T A A C G T A C G T A G T C
T G C A G A C T G T C A C T G A A G C T C A G T C T G A C T A G A C G T A C G T A C G T A C G T

VSX2/MA0726.1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGAATTAGATTC
NTAATTAG----
C G T A A C T G C G T A C G T A A C G T A C G T C G T A A C T G C G T A A C G T A C G T A G T C
T G A C G A C T C G T A C T G A A C G T C G A T C T G A T C A G A C G T A C G T A C G T A C G T

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AGAATTAGATTC-
-TAATTNVATTAN
C G T A A C T G C G T A C G T A A C G T A C G T C G T A A C T G C G T A A C G T A C G T A G T C A C G T
A C G T G C A T C T G A C G T A A G C T A C G T G T A C T C G A C T G A A C G T G A C T C G T A C A T G

PAX4/MA0068.2/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGAATTAGATTC
CTAATTAG----
C G T A A C T G C G T A C G T A A C G T A C G T C G T A A C T G C G T A A C G T A C G T A G T C
A G T C C A G T G C T A C G T A A C G T G C A T G T C A T C A G A C G T A C G T A C G T A C G T

OTX2/MA0712.2/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AGAATTAGATTC
AAGGGATTAGAA--
A C G T A C G T C G T A A C T G C G T A C G T A A C G T A C G T C G T A A C T G C G T A A C G T A C G T A G T C
G C T A C G T A C T A G C T A G C T A G G T C A C A G T G C A T C G T A C T A G C G T A C G T A A C G T A C G T