Information for 11-CCTATATATCTC (Motif 11)

A G T C A G T C A C G T C G T A A C G T C G T A A C G T C G T A A C G T A G T C A C G T A G T C
Reverse Opposite:
A C T G C G T A A C T G C G T A A C G T C G T A A C G T C G T A A C G T C G T A A C T G A C T G
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets154.0 +/- 0.0bp
Average Position of motif in Background93.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0163.1_Six6_2/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CCTATATATCTC---
ATGGGATATATCCGCCT
A C G T A C G T A G T C A G T C A C G T C G T A A C G T C G T A A C G T C G T A A C G T A G T C A C G T A G T C A C G T A C G T A C G T
T G C A C G A T A T C G T A C G A C T G T C G A G A C T C T G A A C G T G T C A A G C T G T A C A G T C T C A G G A T C G A T C C A G T

PB0126.1_Gata5_2/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCTATATATCTC----
NNNCTGATATCTCNNNN
A C G T A G T C A G T C A C G T C G T A A C G T C G T A A C G T C G T A A C G T A G T C A C G T A G T C A C G T A C G T A C G T A C G T
T G C A T G A C C T G A G A T C G C A T C T A G G T C A C A G T G T C A A C G T G T A C C A G T G A T C C A G T T A C G A C G T A G T C

PB0080.1_Tbp_1/Jaspar

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCTATATATCTC--
TCTTTATATATAAATA
A C G T A C G T A G T C A G T C A C G T C G T A A C G T C G T A A C G T C G T A A C G T A G T C A C G T A G T C A C G T A C G T
A G C T A G T C G C A T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A G T C A C A G T T C G A

POL012.1_TATA-Box/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCTATATATCTC----
-GTATAAAAGGCGGGG
A G T C A G T C A C G T C G T A A C G T C G T A A C G T C G T A A C G T A G T C A C G T A G T C A C G T A C G T A C G T A C G T
A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCTATATATCTC----
-GTATAAAAGGCGGGG
A G T C A G T C A C G T C G T A A C G T C G T A A C G T C G T A A C G T A G T C A C G T A G T C A C G T A C G T A C G T A C G T
A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CCTATATATCTC
GGCCATAAATCA-
A C G T A G T C A G T C A C G T C G T A A C G T C G T A A C G T C G T A A C G T A G T C A C G T A G T C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CCTATATATCTC
NCYATMAATCAY
A G T C A G T C A C G T C G T A A C G T C G T A A C G T C G T A A C G T A G T C A C G T A G T C
T A C G G A T C G A T C C T G A A G C T G T C A G C T A T C G A C G A T G A T C G C T A G A C T

RORC/MA1151.1/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CCTATATATCTC
TGACCTANTTAN---
A C G T A C G T A C G T A G T C A G T C A C G T C G T A A C G T C G T A A C G T C G T A A C G T A G T C A C G T A G T C
G A C T T C A G T G C A G A T C G T A C A G C T T G C A T A G C G C A T C G A T G C T A G A C T A C G T A C G T A C G T

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CCTATATATCTC--
NNCCATAAATCATNN
A C G T A G T C A G T C A C G T C G T A A C G T C G T A A C G T C G T A A C G T A G T C A C G T A G T C A C G T A C G T
C T G A T C A G G A T C G T A C T C G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G C A T G C A T G A C T

MF0008.1_MADS_class/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CCTATATATCTC
-CCATATATGG-
A G T C A G T C A C G T C G T A A C G T C G T A A C G T C G T A A C G T A G T C A C G T A G T C
A C G T G A T C A G T C G C T A C G A T C G T A C G A T C G T A G C A T C T A G C A T G A C G T