Information for 4-GCTGGATGCCGG (Motif 4)

A C T G A G T C A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C A C T G A C T G
Reverse Opposite:
A G T C A G T C A C T G A C T G A G T C C G T A A C G T A G T C A G T C C G T A A C T G A G T C
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets93.0 +/- 0.0bp
Average Position of motif in Background124.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.2/Jaspar

Match Rank:1
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GCTGGATGCCGG--
---AGATGGCGGCG
A C T G A G T C A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C A C T G A C T G A C G T A C G T
A C G T A C G T A C G T G T C A T A C G T C G A A G C T T A C G C T A G G A T C A T C G T A C G G T A C T A C G

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GCTGGATGCCGG
TGGCAGNCTGCCAG
A C G T A C G T A C T G A G T C A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C A C T G A C T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

GCM2/MA0767.1/Jaspar

Match Rank:3
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GCTGGATGCCGG--
----TATGCGGGTA
A C T G A G T C A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G A T G C C A T G A C T G C T A G G A C T C T G A

PB0024.1_Gcm1_1/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GCTGGATGCCGG-----
-NNNNATGCGGGTNNNN
A C T G A G T C A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T G T C A C T G A G C A T A C T G T C G A G A C T T C A G A T G C C A T G A C T G A C T G A G C T C G T A A G T C A C T G C G T A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GCTGGATGCCGG
ATGATKGATGRC--
A C G T A C G T A C T G A G T C A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C A C T G A C T G
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T A C G T

GCM1/MA0646.1/Jaspar

Match Rank:6
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GCTGGATGCCGG---
----CATGCGGGTAC
A C T G A G T C A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C T C G A G C A T T C A G G T A C C A T G A C T G A T C G A G C T T C G A A T G C

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCTGGATGCCGG
ANCAGGATGT---
A C G T A C T G A G T C A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C A C T G A C T G
C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T A C G T A C G T A C G T

CENPB/MA0637.1/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GCTGGATGCCGG
TTCGTNNNANGCGGG
A C G T A C G T A C G T A C T G A G T C A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C A C T G A C T G
C A G T C G A T A G T C C A T G A G C T C G A T A T C G A C G T C T G A G C A T T C A G T G A C C T A G C T A G C T A G

NFIX(var.2)/MA1528.1/Jaspar

Match Rank:9
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GCTGGATGCCGG-
GTTGGCACGGTGCCAGG
A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C A C T G A C T G A C G T
A T C G G C A T A C G T A C T G A C T G G T A C C T G A A G T C A T C G C A T G G A C T A C T G A G T C A G T C G T C A C T A G A T C G

YY1(Zf)/Promoter/Homer

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GCTGGATGCCGG-
-CAAGATGGCGGC
A C T G A G T C A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C A C T G A C T G A C G T
A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C