Information for 1-CACTGCAG (Motif 2)

A G T C C G T A A G T C A C G T A C T G A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A G T C C G T A A C T G A C G T A C T G
p-value:1e-5
log p-value:-1.228e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1370.4
Percentage of Background Sequences with motif1.67%
Average Position of motif in Targets75.3 +/- 33.8bp
Average Position of motif in Background99.5 +/- 70.1bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0091.1_Zbtb3_1/Jaspar

Match Rank:1
Score:0.89
Offset:-5
Orientation:forward strand
Alignment:-----CACTGCAG----
AATCGCACTGCATTCCG
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C A C G T A C T G A G T C C G T A A C T G A C G T A C G T A C G T A C G T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

Zic2/MA1629.1/Jaspar

Match Rank:2
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CACTGCAG----
CTCACAGCAGGGGG
A C G T A C G T A G T C C G T A A G T C A C G T A C T G A G T C C G T A A C T G A C G T A C G T A C G T A C G T
T G A C C A G T T G A C G C T A T A G C G T C A T A C G A G T C C T G A C A T G A T C G C T A G T C A G T C A G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CACTGCAG----
CACAGCAGGGGG
A G T C C G T A A G T C A C G T A C T G A G T C C G T A A C T G A C G T A C G T A C G T A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CACTGCAG------
DCHCAGCAGGRGGCC
A C G T A G T C C G T A A G T C A C G T A C T G A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CACTGCAG----
CCACACAGCAGGAGA
A C G T A C G T A C G T A G T C C G T A A G T C A C G T A C T G A G T C C G T A A C T G A C G T A C G T A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CACTGCAG----
GAGCACAGCAGGACA
A C G T A C G T A C G T A G T C C G T A A G T C A C G T A C T G A G T C C G T A A C T G A C G T A C G T A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer

Match Rank:7
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CACTGCAG----
CHCAGCRGGRGG
A G T C C G T A A G T C A C G T A C T G A G T C C G T A A C T G A C G T A C G T A C G T A C G T
T G A C G T C A A G T C G C T A C T A G A G T C C T G A C A T G A C T G C T A G T A C G T C A G

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:8
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CACTGCAG
RSCACTYRAG
A C G T A C G T A G T C C G T A A G T C A C G T A C T G A G T C C G T A A C T G
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

ZNF317/MA1593.1/Jaspar

Match Rank:9
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CACTGCAG---
TAACAGCAGACT
A C G T A G T C C G T A A G T C A C G T A C T G A G T C C G T A A C T G A C G T A C G T A C G T
C G A T T C G A C G T A T G A C C G T A C T A G G T A C C G T A C T A G G C T A G A T C G C A T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:10
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CACTGCAG
NSCACTYVAV
A C G T A C G T A G T C C G T A A G T C A C G T A C T G A G T C C G T A A C T G
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G