| p-value: | 1e-3 |
| log p-value: | -7.678e+00 |
| Information Content per bp: | 1.530 |
| Number of Target Sequences with motif | 1.0 |
| Percentage of Target Sequences with motif | 50.00% |
| Number of Background Sequences with motif | 21.8 |
| Percentage of Background Sequences with motif | 0.02% |
| Average Position of motif in Targets | 43.0 +/- 0.0bp |
| Average Position of motif in Background | 98.5 +/- 64.2bp |
| Strand Bias (log2 ratio + to - strand density) | 10.0 |
| Multiplicity (# of sites on avg that occur together) | 1.00 |
| Motif File: | file (matrix) reverse opposite |
| SVG Files for Logos: | forward logo reverse opposite |
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer
| Match Rank: | 1 |
| Score: | 0.82 |
| Offset: | 1 |
| Orientation: | forward strand |
| Alignment: | GAGCCATTAA- -GGCCATTAAC |
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Hmx1/MA0896.1/Jaspar
| Match Rank: | 2 |
| Score: | 0.76 |
| Offset: | -2 |
| Orientation: | forward strand |
| Alignment: | --GAGCCATTAA----- ACAAGCAATTAATGAAT |
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|
PH0041.1_Hmx1/Jaspar
| Match Rank: | 3 |
| Score: | 0.76 |
| Offset: | -2 |
| Orientation: | forward strand |
| Alignment: | --GAGCCATTAA----- ACAAGCAATTAATGAAT |
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NKX6-3/MA1530.1/Jaspar
| Match Rank: | 4 |
| Score: | 0.76 |
| Offset: | 2 |
| Orientation: | forward strand |
| Alignment: | GAGCCATTAA- --CTCATTAAA |
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|
|
Isl1/MA1608.1/Jaspar
| Match Rank: | 5 |
| Score: | 0.75 |
| Offset: | 1 |
| Orientation: | forward strand |
| Alignment: | GAGCCATTAA-- -ATCCATTAGCA |
|
|
|
PH0064.1_Hoxb9/Jaspar
| Match Rank: | 6 |
| Score: | 0.74 |
| Offset: | -1 |
| Orientation: | forward strand |
| Alignment: | -GAGCCATTAA----- AGAGCCATAAAATTCG |
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|
|
HOXD8/MA0910.2/Jaspar
| Match Rank: | 7 |
| Score: | 0.74 |
| Offset: | 2 |
| Orientation: | forward strand |
| Alignment: | GAGCCATTAA --GCAATTAC |
|
|
|
HOXB6/MA1500.1/Jaspar
| Match Rank: | 8 |
| Score: | 0.74 |
| Offset: | 2 |
| Orientation: | reverse strand |
| Alignment: | GAGCCATTAA --GTAATTAN |
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|
|
HOXB8/MA1502.1/Jaspar
| Match Rank: | 9 |
| Score: | 0.73 |
| Offset: | 2 |
| Orientation: | forward strand |
| Alignment: | GAGCCATTAA --GCAATTAC |
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|
|
Hmx3/MA0898.1/Jaspar
| Match Rank: | 10 |
| Score: | 0.72 |
| Offset: | -2 |
| Orientation: | forward strand |
| Alignment: | --GAGCCATTAA----- ACAAGCAATTAAAGAAT |
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