Information for 8-GTCTAAAAGG (Motif 30)

A C T G A C G T A G T C A C G T C G T A C G T A C G T A C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T A C G T A C G T A C G T C G T A A C T G C G T A A G T C
p-value:1e-3
log p-value:-8.084e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif14.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets53.0 +/- 0.0bp
Average Position of motif in Background121.6 +/- 53.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--GTCTAAAAGG
GNCTATAAAAGG
A C G T A C G T A C T G A C G T A G T C A C G T C G T A C G T A C G T A C G T A A C T G A C T G
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GTCTAAAAGG-----
GTATAAAAGGCGGGG
A C T G A C G T A G T C A C G T C G T A C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GTCTAAAAGG-----
GTATAAAAGGCGGGG
A C T G A C G T A G T C A C G T C G T A C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

ZSCAN29/MA1602.1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GTCTAAAAGG-
CGTCTACACGGG
A C G T A C T G A C G T A G T C A C G T C G T A C G T A C G T A C G T A A C T G A C T G A C G T
A G T C C T A G A G C T G T A C A G C T G C T A G A T C C T G A A T G C T C A G C T A G T A C G

BARHL1/MA0877.2/Jaspar

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GTCTAAAAGG
--CTAAACGG
A C T G A C G T A G T C A C G T C G T A C G T A C G T A C G T A A C T G A C T G
A C G T A C G T T A G C C G A T C G T A G T C A C G T A A G T C C T A G C A T G

BARHL2/MA0635.1/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GTCTAAAAGG-
-GCTAAACGGT
A C T G A C G T A G T C A C G T C G T A C G T A C G T A C G T A A C T G A C T G A C G T
A C G T T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T

HLTF/MA0109.1/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GTCTAAAAGG--
--NNATAAGGNN
A C T G A C G T A G T C A C G T C G T A C G T A C G T A C G T A A C T G A C T G A C G T A C G T
A C G T A C G T C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T

SMAD3/MA0795.1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GTCTAAAAGG
TGTCTAGACG-
A C G T A C T G A C G T A G T C A C G T C G T A C G T A C G T A C G T A A C T G A C T G
C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G A C G T

Smad4/MA1153.1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GTCTAAAAGG
TGTCTAGA---
A C G T A C T G A C G T A G T C A C G T C G T A C G T A C G T A C G T A A C T G A C T G
G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GTCTAAAAGG-------
-TCTCAAAGGTCACGAG
A C T G A C G T A G T C A C G T C G T A C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G