Information for 2-CCAGGACAAGGG (Motif 3)

A G T C A G T C C G T A A C T G A C T G C G T A A G T C C G T A C G T A A C T G A C T G A C T G
Reverse Opposite:
A G T C A G T C A G T C A C G T A C G T A C T G A C G T A G T C A G T C A C G T A C T G A C T G
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets19.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0200.1_Zfp187_2/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CCAGGACAAGGG---
NNAGGGACAAGGGCNC
A C G T A G T C A G T C C G T A A C T G A C T G C G T A A G T C C G T A C G T A A C T G A C T G A C T G A C G T A C G T A C G T
A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C

Sox6/MA0515.1/Jaspar

Match Rank:2
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CCAGGACAAGGG
--AAAACAATGG
A G T C A G T C C G T A A C T G A C T G C G T A A G T C C G T A C G T A A C T G A C T G A C T G
A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:3
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CCAGGACAAGGG--
--AGGTCAAGGTCA
A G T C A G T C C G T A A C T G A C T G C G T A A G T C C G T A C G T A A C T G A C T G A C T G A C G T A C G T
A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:4
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CCAGGACAAGGG--
--AGGTCAAGGTCA
A G T C A G T C C G T A A C T G A C T G C G T A A G T C C G T A C G T A A C T G A C T G A C T G A C G T A C G T
A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCAGGACAAGGG
VVRRAACAATGG
A G T C A G T C C G T A A C T G A C T G C G T A A G T C C G T A C G T A A C T G A C T G A C T G
T G A C T A G C T C A G T C G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T A C G

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CCAGGACAAGGG
--AAAACAAAGG
A G T C A G T C C G T A A C T G A C T G C G T A A G T C C G T A C G T A A C T G A C T G A C T G
A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CCAGGACAAGGG-
---GAACAATGGN
A G T C A G T C C G T A A C T G A C T G C G T A A G T C C G T A C G T A A C T G A C T G A C T G A C G T
A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer

Match Rank:8
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CCAGGACAAGGG-
-BMRVACAAWGGV
A G T C A G T C C G T A A C T G A C T G C G T A A G T C C G T A C G T A A C T G A C T G A C T G A C G T
A C G T A T G C T G A C C T G A T A C G C G T A A G T C C G T A C G T A C G T A C T A G T C A G T G C A

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:9
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CCAGGACAAGGG
--GGAACAAAGR
A G T C A G T C C G T A A C T G A C T G C G T A A G T C C G T A C G T A A C T G A C T G A C T G
A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CCAGGACAAGGG
--VRRACAAWGG
A G T C A G T C C G T A A C T G A C T G C G T A A G T C C G T A C G T A A C T G A C T G A C T G
A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G