Information for 3-GGGGTAGCAAAA (Motif 3)

A C T G A C T G A C T G A C T G A C G T C G T A A C T G A G T C C G T A C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A A G T C A G T C A G T C A G T C
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets31.0 +/- 0.0bp
Average Position of motif in Background184.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0166.1_Six6_2/Jaspar

Match Rank:1
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GGGGTAGCAAAA--
AATAGGGTATCAATATT
A C G T A C G T A C G T A C T G A C T G A C T G A C T G A C G T C G T A A C T G A G T C C G T A C G T A C G T A C G T A A C G T A C G T
C T G A C G T A C G A T T C G A C T A G C A T G T C A G C A G T C T G A A C G T G A T C G C T A G C T A G A C T G C T A G A C T A C G T

PB0059.1_Six6_1/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GGGGTAGCAAAA--
AATAGGGTATCATATAT
A C G T A C G T A C G T A C T G A C T G A C T G A C T G A C G T C G T A A C T G A G T C C G T A C G T A C G T A C G T A A C G T A C G T
C T G A G C T A C G A T T C G A C T A G A C T G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C G T A C G A T G C T A G A C T

PH0162.1_Six2/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GGGGTAGCAAAA--
AATGGGGTATCACGTTT
A C G T A C G T A C G T A C T G A C T G A C T G A C T G A C G T C G T A A C T G A G T C C G T A C G T A C G T A C G T A A C G T A C G T
C T G A G C T A C A G T T C A G C T A G A C T G C T A G A C G T C T G A A C G T G A T C C T G A G A T C C A G T G C A T G A C T C A G T

PH0165.1_Six6_1/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GGGGTAGCAAAA--
AATAGGGTATCAATTAT
A C G T A C G T A C G T A C T G A C T G A C T G A C T G A C G T C G T A A C T G A G T C C G T A C G T A C G T A C G T A A C G T A C G T
C T G A G C T A C G A T T C G A T C A G A C T G T C A G A C G T C T G A A C G T G A T C C G T A G T C A C G A T G C A T G C T A A C G T

PH0161.1_Six1/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GGGGTAGCAAAA--
GATGGGGTATCATTTTT
A C G T A C G T A C G T A C T G A C T G A C T G A C T G A C G T C G T A A C T G A G T C C G T A C G T A C G T A C G T A A C G T A C G T
C T A G G C T A C A G T T C A G C T A G A T C G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C A G T G C A T A C G T C A G T

Six3/MA0631.1/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GGGGTAGCAAAA--
GATAGGGTATCACTAAT
A C G T A C G T A C G T A C T G A C T G A C T G A C T G A C G T C G T A A C T G A G T C C G T A C G T A C G T A C G T A A C G T A C G T
C T A G C G T A C G A T C T G A T A C G A C T G T C A G A C G T C T G A A C G T G A T C T C G A G A T C G C A T C G A T G C T A A C G T

PH0163.1_Six3/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GGGGTAGCAAAA--
GATAGGGTATCACTAAT
A C G T A C G T A C G T A C T G A C T G A C T G A C T G A C G T C G T A A C T G A G T C C G T A C G T A C G T A C G T A A C G T A C G T
C T A G C G T A C G A T C T G A T A C G A C T G T C A G A C G T C T G A A C G T G A T C T C G A G A T C G C A T C G A T G C T A A C G T

PB0156.1_Plagl1_2/Jaspar

Match Rank:8
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GGGGTAGCAAAA
GCTGGGGGGTACCCCTT
A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C T G A C T G A C G T C G T A A C T G A G T C C G T A C G T A C G T A C G T A
C T A G A G T C G C A T C T A G C A T G A C T G C T A G A C T G A C T G A C G T C T G A G A T C G T A C G T A C G A T C G A C T C G A T

HOXC12/MA0906.1/Jaspar

Match Rank:9
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GGGGTAGCAAAA-
--GGTCGTAAAAA
A C T G A C T G A C T G A C T G A C G T C G T A A C T G A G T C C G T A C G T A C G T A C G T A A C G T
A C G T A C G T C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A

PB0145.1_Mafb_2/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GGGGTAGCAAAA----
-CAATTGCAAAAATAT
A C T G A C T G A C T G A C T G A C G T C G T A A C T G A G T C C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T