Information for 11-GCAAATGGCC (Motif 17)

A C T G A G T C C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C T G A G T C
p-value:1e-3
log p-value:-7.614e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif46.7
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets24.0 +/- 0.0bp
Average Position of motif in Background94.4 +/- 64.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MSGN1/MA1524.1/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--GCAAATGGCC
NNACATATGGCN
A C G T A C G T A C T G A G T C C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C
A T C G T C A G T G C A A T G C T C G A G C A T C G T A A G C T A T C G T A C G A G T C T A C G

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GCAAATGGCC
GTTAATGGCC
A C T G A G T C C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GCAAATGGCC
AACAGATGGC-
A C G T A C T G A G T C C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T

NEUROG2(var.2)/MA1642.1/Jaspar

Match Rank:4
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GCAAATGGCC
GGAACAGATGGCA
A C G T A C G T A C G T A C T G A G T C C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C
C T A G C T A G T C G A T G C A T A G C T C G A A C T G T G C A G A C T C A T G A C T G A G T C T G C A

NEUROD1/MA1109.1/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GCAAATGGCC-
GGACAGATGGCAG
A C G T A C G T A C T G A G T C C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C A C G T
C A T G T C A G T C G A T G A C C G T A A C T G T G C A G C A T C A T G A C T G A G T C T C G A T A C G

Isl1/MA1608.1/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GCAAATGGCC
NNCTAATGGNN
A C G T A C T G A G T C C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C
A C G T T C A G G A T C C G A T C T G A C G T A G A C T C A T G C T A G T G C A G A C T

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:7
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GCAAATGGCC---
AAGGCCAGATGGTCCGG
A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C A C G T A C G T A C G T
G C T A T C G A C T A G C A T G T A G C G T A C C T G A A C T G T C G A C G A T A C T G C A T G A G C T G A T C A T G C A T C G T C A G

NEUROD2/MA0668.1/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCAAATGGCC
ACCATATGGC-
A C G T A C T G A G T C C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C
C T G A T G A C G T A C C T G A A C G T C T G A G A C T A T C G A C T G A G T C A C G T

Bhlha15/MA0607.1/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCAAATGGCC
ACATATGG--
A C T G A G T C C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C
T C G A A G T C C G T A A C G T G T C A A C G T A C T G A T C G A C G T A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GCAAATGGCC
ATATGCAAAT----
A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C
G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T