Information for 1-GTCTTTTAAGCC (Motif 2)

A C T G A C G T A G T C A C G T A C G T A C G T A C G T C G T A C G T A A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C A C G T A C G T C G T A C G T A C G T A C G T A A C T G C G T A A G T C
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets100.0 +/- 0.0bp
Average Position of motif in Background180.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GTCTTTTAAGCC---
GACTTTTAWTTTGAA
A C T G A C G T A G T C A C G T A C G T A C G T A C G T C G T A C G T A A C T G A G T C A G T C A C G T A C G T A C G T
C T A G C T G A A G T C G A C T G A C T G A C T A C G T C T G A G C A T C A G T G A C T C G A T T C A G C T G A G T C A

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GTCTTTTAAGCC-
---TTTGAAACCG
A C T G A C G T A G T C A C G T A C G T A C G T A C G T C G T A C G T A A C T G A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.59
Offset:6
Orientation:forward strand
Alignment:GTCTTTTAAGCC--
------TAATCCCN
A C T G A C G T A G T C A C G T A C G T A C G T A C G T C G T A C G T A A C T G A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G

TATA-Box(TBP)/Promoter/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GTCTTTTAAGCC-
-CCTTTTATAGNC
A C T G A C G T A G T C A C G T A C G T A C G T A C G T C G T A C G T A A C T G A G T C A G T C A C G T
A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

PH0137.1_Pitx1/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GTCTTTTAAGCC------
-NTTGTTAATCCCTCTNN
A C T G A C G T A G T C A C G T A C G T A C G T A C G T C G T A C G T A A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G T A C A G T G A C T C A T G G A C T C G A T C G T A C G T A A C G T G A T C A G T C A G T C G A C T A G T C A G C T T G C A C T G A

PITX3/MA0714.1/Jaspar

Match Rank:6
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GTCTTTTAAGCC-
----CTTAATCCC
A C T G A C G T A G T C A C G T A C G T A C G T A C G T C G T A C G T A A C T G A G T C A G T C A C G T
A C G T A C G T A C G T A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C

RHOXF1/MA0719.1/Jaspar

Match Rank:7
Score:0.58
Offset:5
Orientation:forward strand
Alignment:GTCTTTTAAGCC-
-----ATAATCCC
A C T G A C G T A G T C A C G T A C G T A C G T A C G T C G T A C G T A A C T G A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C

PH0138.1_Pitx2/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GTCTTTTAAGCC-----
GNNNATTAATCCCTNCN
A C T G A C G T A G T C A C G T A C G T A C G T A C G T C G T A C G T A A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T
C T A G G C T A G A C T C T A G C T G A G A C T C G A T C G T A C T G A A C G T G A T C A G T C A G T C A G C T G C A T G T A C G T C A

PITX1/MA0682.2/Jaspar

Match Rank:9
Score:0.57
Offset:5
Orientation:forward strand
Alignment:GTCTTTTAAGCC-
-----CTAATCCC
A C T G A C G T A G T C A C G T A C G T A C G T A C G T C G T A C G T A A C T G A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A T C A C G T C G T A C G T A A C G T G T A C A G T C G T A C

OTX1/MA0711.1/Jaspar

Match Rank:10
Score:0.57
Offset:5
Orientation:forward strand
Alignment:GTCTTTTAAGCC-
-----TTAATCCG
A C T G A C G T A G T C A C G T A C G T A C G T A C G T C G T A C G T A A C T G A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G