Information for 1-CAGACACTCG (Motif 1)

A G T C C G T A A C T G C G T A A G T C C G T A A G T C A C G T A G T C A C T G
Reverse Opposite:
A G T C A C T G C G T A A C T G A C G T A C T G A C G T A G T C A C G T A C T G
p-value:1e-4
log p-value:-1.024e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets67.0 +/- 0.0bp
Average Position of motif in Background149.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CAGACACTCG
CCAGACRSVB-
A C G T A G T C C G T A A C T G C G T A A G T C C G T A A G T C A C G T A G T C A C T G
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CAGACACTCG
CCAGACAG---
A C G T A G T C C G T A A C T G C G T A A G T C C G T A A G T C A C G T A G T C A C T G
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------CAGACACTCG-
CAAATCCAGACATCACA
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C C G T A A G T C A C G T A G T C A C T G A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CAGACACTCG
BCAGACWA---
A C G T A G T C C G T A A C T G C G T A A G T C C G T A A G T C A C G T A G T C A C T G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:5
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CAGACACTCG-
AGCGGCACACACGCAA
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C C G T A A G T C A C G T A G T C A C T G A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:6
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CAGACACTCG-
-MRSCACTYAA
A G T C C G T A A C T G C G T A A G T C C G T A A G T C A C G T A G T C A C T G A C G T
A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CAGACACTCG-
-AASCACTCAA
A G T C C G T A A C T G C G T A A G T C C G T A A G T C A C G T A G T C A C T G A C G T
A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

Smad4/MA1153.1/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CAGACACTCG
TCTAGACA----
A C G T A C G T A G T C C G T A A C T G C G T A A G T C C G T A A G T C A C G T A G T C A C T G
A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CAGACACTCG--
--RSCACTYRAG
A G T C C G T A A C T G C G T A A G T C C G T A A G T C A C G T A G T C A C T G A C G T A C G T
A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CAGACACTCG--
-AGCCACTCAAG
A G T C C G T A A C T G C G T A A G T C C G T A A G T C A C G T A G T C A C T G A C G T A C G T
A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G