Information for 5-GGTAATGGCC (Motif 27)

A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C A G T C C G T A A C G T A C G T C G T A A G T C A G T C
p-value:1e-3
log p-value:-8.084e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif14.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets60.0 +/- 0.0bp
Average Position of motif in Background122.7 +/- 66.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:GGTAATGGCC
GTTAATGGCC
A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C A G T C
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

HOXD8/MA0910.2/Jaspar

Match Rank:2
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:GGTAATGGCC
-GTAATTGC-
A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C A G T C
A C G T A C T G A C G T G T C A C G T A A C G T A C G T C T A G A G T C A C G T

HOXB8/MA1502.1/Jaspar

Match Rank:3
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:GGTAATGGCC
-NTAATTGC-
A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C A G T C
A C G T A C T G A C G T G T C A C G T A A C G T A C G T C T A G T G A C A C G T

HOXA7/MA1498.1/Jaspar

Match Rank:4
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:GGTAATGGCC
-GTAATTGC-
A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C A G T C
A C G T A T C G A C G T G T C A C G T A C G A T A C G T T C A G T A G C A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:5
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GGTAATGGCC
GKTAATGR--
A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C A G T C
A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T A C G T

Isl1/MA1608.1/Jaspar

Match Rank:6
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-GGTAATGGCC
NNCTAATGGNN
A C G T A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C A G T C
A C G T T C A G G A T C C G A T C T G A C G T A G A C T C A T G C T A G T G C A G A C T

HOXB6/MA1500.1/Jaspar

Match Rank:7
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GGTAATGGCC
-TTAATTAC-
A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C A G T C
A C G T A G C T A G C T G T C A C G T A A C G T A C G T C T G A A G T C A C G T

HOXA6/MA1497.1/Jaspar

Match Rank:8
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GGTAATGGCC
NNTAATTACN
A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C A G T C
T A C G G A C T G C A T G C T A C G T A A G C T C A G T T C G A T A G C T G A C

BARX1/MA0875.1/Jaspar

Match Rank:9
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GGTAATGGCC
-NTAATTGN-
A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C A G T C
A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C A C G T

RARB(var.3)/MA1552.1/Jaspar

Match Rank:10
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GGTAATGGCC--
AAGGTCATGACCTT
A C G T A C G T A C T G A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C A G T C A C G T A C G T
C T G A T C G A C T A G C A T G A C G T A G T C C T G A G A C T T C A G T C G A G T A C T G A C A G C T G A C T