Information for 4-AAGATTTGAACC (Motif 4)

C G T A C G T A A C T G C G T A A C G T A C G T A C G T A C T G C G T A C G T A A G T C A G T C
Reverse Opposite:
A C T G A C T G A C G T A C G T A G T C C G T A C G T A C G T A A C G T A G T C A C G T A C G T
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets167.0 +/- 0.0bp
Average Position of motif in Background71.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.66
Offset:3
Orientation:forward strand
Alignment:AAGATTTGAACC
---ATTTGAATT
C G T A C G T A A C T G C G T A A C G T A C G T A C G T A C T G C G T A C G T A A G T C A G T C
A C G T A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:AAGATTTGAACC--
----TTTGAAACCG
C G T A C G T A A C T G C G T A A C G T A C G T A C G T A C T G C G T A C G T A A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

GATA1/MA0035.4/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AAGATTTGAACC
NNAGATTAGAN--
A C G T C G T A C G T A A C T G C G T A A C G T A C G T A C G T A C T G C G T A C G T A A G T C A G T C
C G T A G C A T C G T A C A T G C G T A C G A T G C A T G C T A C A T G C G T A G C T A A C G T A C G T

VDR/MA0693.2/Jaspar

Match Rank:4
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:AAGATTTGAACC--
------TGAACTCA
C G T A C G T A A C T G C G T A A C G T A C G T A C G T A C T G C G T A C G T A A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G T C A T G C A T G A C G A C T A G T C C T G A

TBX21/MA0690.1/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AAGATTTGAACC
AAGGTGTGAA--
C G T A C G T A A C T G C G T A A C G T A C G T A C G T A C T G C G T A C G T A A G T C A G T C
C T G A C T G A C T A G A C T G A G C T C A T G G A C T A C T G C T G A G C T A A C G T A C G T

PB0194.1_Zbtb12_2/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AAGATTTGAACC--
TATCATTAGAACGCT
A C G T C G T A C G T A A C T G C G T A A C G T A C G T A C G T A C T G C G T A C G T A A G T C A G T C A C G T A C G T
G C A T T G C A G A C T A T G C T C G A C G A T C A G T C T G A C A T G G C T A G T C A G T A C A C T G A G T C C G A T

RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer

Match Rank:7
Score:0.57
Offset:5
Orientation:forward strand
Alignment:AAGATTTGAACC---
-----TTGAMCTTTG
C G T A C G T A A C T G C G T A A C G T A C G T A C G T A C T G C G T A C G T A A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T A G C T C A T G C T G A G T A C A G T C A G C T A G C T C A G T C T A G

PB0030.1_Hnf4a_1/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AAGATTTGAACC------
-NNANTTGACCCCTNNNN
C G T A C G T A A C T G C G T A A C G T A C G T A C G T A C T G C G T A C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T A C C G T A T C G A A C G T A C G T C T A G G T C A G T A C G T A C A G T C A G T C C A G T A C T G T C A G G T C A T A C G

ZNF652/MA1657.1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AAGATTTGAACC
GAAAGAGTTAAA--
A C G T A C G T C G T A C G T A A C T G C G T A A C G T A C G T A C G T A C T G C G T A C G T A A G T C A G T C
A C T G T C G A T G C A C T G A A T C G C T G A C T A G C G A T A G C T G C T A T G C A G C T A A C G T A C G T

GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AAGATTTGAACC--
NNAGATNVNWATCTN
A C G T C G T A C G T A A C T G C G T A A C G T A C G T A C G T A C T G C G T A C G T A A G T C A G T C A C G T A C G T
C T A G T G A C C G T A A C T G C G T A A C G T G C T A T C G A A G C T C G A T C G T A A C G T A G T C C G A T T A C G