Information for 1-GACAAATCGG (Motif 1)

A C T G C G T A A G T C C G T A C G T A C G T A A C G T A G T C A C T G A C T G
Reverse Opposite:
A G T C A G T C A C T G C G T A A C G T A C G T A C G T A C T G A C G T A G T C
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets10.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0032.1_IRC900814_1/Jaspar

Match Rank:1
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------GACAAATCGG
ATTTACGACAAATAGC
A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C C G T A C G T A C G T A A C G T A G T C A C T G A C T G
C G T A C G A T G A C T A G C T G C T A A G T C A C T G C T G A T G A C C T G A C G T A G C T A G C A T C G T A C T A G A G T C

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GACAAATCGG
AGCCAATCGG
A C T G C G T A A G T C C G T A C G T A C G T A A C G T A G T C A C T G A C T G
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFYA/MA0060.3/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GACAAATCGG-
AACCAATCAGA
A C T G C G T A A G T C C G T A C G T A C G T A A C G T A G T C A C T G A C T G A C G T
T C G A C T G A A G T C G A T C G C T A T C G A G A C T T A G C T C G A T A C G T G C A

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:4
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GACAAATCGG
ACCGTGACTAATTNN
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C C G T A C G T A C G T A A C G T A G T C A C T G A C T G
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

VENTX/MA0724.1/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GACAAATCGG-
--CTAATCGNT
A C T G C G T A A G T C C G T A C G T A C G T A A C G T A G T C A C T G A C T G A C G T
A C G T A C G T G A T C A C G T C G T A C G T A C A G T A G T C C T A G A C T G G C A T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GACAAATCGG
RNAACAATGG--
A C G T A C G T A C T G C G T A A G T C C G T A C G T A C G T A A C G T A G T C A C T G A C T G
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T A C G T

SOX10/MA0442.2/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GACAAATCGG
AAAACAAAGAA-
A C G T A C G T A C T G C G T A A G T C C G T A C G T A C G T A A C G T A G T C A C T G A C T G
C T G A C T G A T G C A G C T A A G T C C G T A G C T A G C T A A C T G T C G A T G C A A C G T

NFYC/MA1644.1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GACAAATCGG-
AGCCAATCAGA
A C T G C G T A A G T C C G T A C G T A C G T A A C G T A G T C A C T G A C T G A C G T
T C G A C T A G A G T C G T A C G C T A T C G A G A C T T A G C T C G A T A C G T G C A

MEIS1/MA0498.2/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GACAAATCGG
TTGACAG-----
A C G T A C G T A C T G C G T A A G T C C G T A C G T A C G T A A C G T A G T C A C T G A C T G
G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T A C G T

SOX4/MA0867.2/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GACAAATCGG
GAACAAAGGG-
A C G T A C T G C G T A A G T C C G T A C G T A C G T A A C G T A G T C A C T G A C T G
C T A G T C G A C G T A A T G C T C G A T C G A G C T A C T A G T C A G T C A G A C G T