Information for 5-TTGGCAACAAGG (Motif 6)

A C G T A C G T A C T G A C T G A G T C C G T A C G T A A G T C C G T A C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T A C G T A C T G A C G T A C G T A C T G A G T C A G T C C G T A C G T A
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets108.0 +/- 0.0bp
Average Position of motif in Background8.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--TTGGCAACAAGG
NNTTGGCANN----
A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A C G T A A G T C C G T A C G T A A C T G A C T G
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TTGGCAACAAGG
CTTGGCAA-----
A C G T A C G T A C G T A C T G A C T G A G T C C G T A C G T A A G T C C G T A C G T A A C T G A C T G
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TTGGCAACAAGG
NTTGGCANN----
A C G T A C G T A C G T A C T G A C T G A G T C C G T A C G T A A G T C C G T A C G T A A C T G A C T G
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T

NFIC/MA0161.2/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TTGGCAACAAGG
TACTTGGCAGA----
A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A C G T A A G T C C G T A C G T A A C T G A C T G
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A A C G T A C G T A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TTGGCAACAAGG
SCCTAGCAACAG--
A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A C G T A A G T C C G T A C G T A A C T G A C T G
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T

RFX1/MA0509.2/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TTGGCAACAAGG
TNCCATAGCAACNN--
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A C G T A A G T C C G T A C G T A A C T G A C T G
G A C T C A T G A G T C G A T C G T C A G A C T T C G A C T A G G A T C C T G A T C G A G A T C G T C A T C A G A C G T A C G T

RFX7/MA1554.1/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TTGGCAACAAGG
NTAGCAACG---
A C G T A C G T A C T G A C T G A G T C C G T A C G T A A G T C C G T A C G T A A C T G A C T G
C T G A G A C T T C G A T A C G G A T C C T G A C T G A A T G C T A C G A C G T A C G T A C G T

FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TTGGCAACAAGG
ATGTAAACADGS
A C G T A C G T A C T G A C T G A G T C C G T A C G T A A G T C C G T A C G T A A C T G A C T G
C G T A C A G T T C A G C G A T G T C A G T C A C G T A A G T C C G T A C G A T A T C G A T G C

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TTGGCAACAAGG
GGTTGGCAT-----
A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A C G T A A G T C C G T A C G T A A C T G A C T G
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:TTGGCAACAAGG-
---VRRACAAWGG
A C G T A C G T A C T G A C T G A G T C C G T A C G T A A G T C C G T A C G T A A C T G A C T G A C G T
A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G