Information for 20-ACATGCATAAGT (Motif 21)

C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A C G T A A C T G A C G T
Reverse Opposite:
C G T A A G T C A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C T G A C G T
p-value:1e-4
log p-value:-1.023e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.0 +/- 0.0bp
Average Position of motif in Background20.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0148.1_Pou3f3/Jaspar

Match Rank:1
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---ACATGCATAAGT--
AAAATATGCATAATAAA
A C G T A C G T A C G T C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A C G T A A C T G A C G T A C G T A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.70
Offset:2
Orientation:forward strand
Alignment:ACATGCATAAGT
--ATGMATATDC
C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A C G T A A C T G A C G T
A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.67
Offset:2
Orientation:forward strand
Alignment:ACATGCATAAGT--
--ATGCATAATTCA
C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.66
Offset:2
Orientation:forward strand
Alignment:ACATGCATAAGT
--ATGAATATTC
C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A C G T A A C T G A C G T
A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

PH0087.1_Irx6/Jaspar

Match Rank:5
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----ACATGCATAAGT
AAAATACATGTAAAAAT
A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A C G T A A C T G A C G T
G C T A G C T A G C T A C T G A C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G T C A C G T A C G T A G C T A C G A T

PH0086.1_Irx5/Jaspar

Match Rank:6
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----ACATGCATAAGT
AATATACATGTAAAATT
A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A C G T A A C T G A C G T
C G A T C G T A C G A T G C T A C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A G T C A C G T A C G T A A C G T C G A T

POU5F1/MA1115.1/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ACATGCATAAGT
ATATGCAAATT-
C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A C G T A A C T G A C G T
C G T A G C A T T C G A G A C T C T A G A G T C G C T A C T G A G C T A G C A T C A G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:ACATGCATAAGT-
ATATGCAAATNNN
C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A C G T A A C T G A C G T A C G T
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

PH0082.1_Irx2/Jaspar

Match Rank:9
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----ACATGCATAAGT
TAAATACATGTAAAATT
A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A C G T A A C T G A C G T
C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T

HLF/MA0043.3/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-ACATGCATAAGT-
NNGTTGCATAACNN
A C G T C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A C G T A A C T G A C G T A C G T
G C A T C A G T T C A G G A C T C A G T C T A G G A T C T C G A G A C T G T C A C G T A A G T C G T C A G C T A