Information for 2-TTGGAGAAAGGC (Motif 2)

A C G T A C G T A C T G A C T G C G T A A C T G C G T A C G T A C G T A A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C A C G T A C G T A C G T A G T C A C G T A G T C A G T C C G T A C G T A
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets36.0 +/- 0.0bp
Average Position of motif in Background63.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM1/MA0508.3/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:TTGGAGAAAGGC
-NAGAGAAAGNA
A C G T A C G T A C T G A C T G C G T A A C T G C G T A C G T A C G T A A C T G A C T G A G T C
A C G T C T G A C T G A C A T G G C T A C A T G G C T A C G T A G C T A C A T G C G T A C T G A

PB0137.1_Irf3_2/Jaspar

Match Rank:2
Score:0.70
Offset:2
Orientation:forward strand
Alignment:TTGGAGAAAGGC----
--GGAGAAAGGTGCGA
A C G T A C G T A C T G A C T G C G T A A C T G C G T A C G T A C G T A A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

NFATC2/MA0152.1/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TTGGAGAAAGGC
-TGGAAAA----
A C G T A C G T A C T G A C T G C G T A A C T G C G T A C G T A C G T A A C T G A C T G A G T C
A C G T C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T A C G T A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TTGGAGAAAGGC--
GTAGGGCAAAGGTCA
A C G T A C G T A C G T A C T G A C T G C G T A A C T G C G T A C G T A C G T A A C T G A C T G A G T C A C G T A C G T
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TTGGAGAAAGGC--
TGGGGCAAAGGTCA
A C G T A C G T A C T G A C T G C G T A A C T G C G T A C G T A C G T A A C T G A C T G A G T C A C G T A C G T
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TTGGAGAAAGGC
-GGAACAAAGR-
A C G T A C G T A C T G A C T G C G T A A C T G C G T A C G T A C G T A A C T G A C T G A G T C
A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T

Sox3/MA0514.1/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TTGGAGAAAGGC
-AAAACAAAGG-
A C G T A C G T A C T G A C T G C G T A A C T G C G T A C G T A C G T A A C T G A C T G A G T C
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TTGGAGAAAGGC--
TAGGGCAAAGGTCA
A C G T A C G T A C T G A C T G C G T A A C T G C G T A C G T A C G T A A C T G A C T G A G T C A C G T A C G T
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TTGGAGAAAGGC
---RACAAWGG-
A C G T A C G T A C T G A C T G C G T A A C T G C G T A C G T A C G T A A C T G A C T G A G T C
A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T

PB0145.1_Mafb_2/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---TTGGAGAAAGGC
CAATTGCAAAAATAT
A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G C G T A C G T A C G T A A C T G A C T G A G T C
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T