Information for 2-CTGAGGAGGTCA (Motif 3)

A G T C A C G T A C T G C G T A A C T G A C T G C G T A A C T G A C T G A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A G T C A G T C A C G T A G T C A G T C A C G T A G T C C G T A A C T G
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets28.0 +/- 0.0bp
Average Position of motif in Background90.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:1
Score:0.71
Offset:4
Orientation:forward strand
Alignment:CTGAGGAGGTCA
----AGRGGTCA
A G T C A C G T A C T G C G T A A C T G A C T G C G T A A C T G A C T G A C G T A G T C C G T A
A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A

ATF2/MA1632.1/Jaspar

Match Rank:2
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CTGAGGAGGTCA--
-AAATGAGGTCATT
A G T C A C G T A C T G C G T A A C T G A C T G C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T
A C G T C G T A C T G A T C G A G A C T C A T G G C T A A C T G T C A G G C A T G T A C C T G A A G C T G A C T

NR2C1/MA1535.1/Jaspar

Match Rank:3
Score:0.68
Offset:4
Orientation:forward strand
Alignment:CTGAGGAGGTCA-
----CGAGGTCAC
A G T C A C G T A C T G C G T A A C T G A C T G C G T A A C T G A C T G A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T G T A C C T A G T C G A A C T G A C T G A C G T A T G C C T G A G A T C

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.67
Offset:4
Orientation:forward strand
Alignment:CTGAGGAGGTCA
----TRAGGTCA
A G T C A C G T A C T G C G T A A C T G A C T G C G T A A C T G A C T G A C G T A G T C C G T A
A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A

NR2C2(var.2)/MA1536.1/Jaspar

Match Rank:5
Score:0.67
Offset:5
Orientation:forward strand
Alignment:CTGAGGAGGTCA-
-----GAGGTCAT
A G T C A C G T A C T G C G T A A C T G A C T G C G T A A C T G A C T G A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T C G A A C T G A C T G A C G T A G T C C T G A G C A T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.67
Offset:6
Orientation:forward strand
Alignment:CTGAGGAGGTCA
------AGGTCA
A G T C A C G T A C T G C G T A A C T G A C T G C G T A A C T G A C T G A C G T A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A

ZKSCAN5/MA1652.1/Jaspar

Match Rank:7
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CTGAGGAGGTCA---
-GGAGGAGGTGAGAA
A G T C A C G T A C T G C G T A A C T G A C T G C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T
A C G T C T A G T C A G C T G A C T A G T C A G T G C A C T A G C T A G A G C T T C A G T C G A C A T G T C G A T C G A

COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CTGAGGAGGTCA
GKBCARAGGTCA
A G T C A C G T A C T G C G T A A C T G A C T G C G T A A C T G A C T G A C G T A G T C C G T A
T A C G A C T G A G C T G T A C C G T A T C G A C T G A A C T G C A T G A C G T A G T C C G T A

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.65
Offset:5
Orientation:forward strand
Alignment:CTGAGGAGGTCA-
-----AAGGTCAC
A G T C A C G T A C T G C G T A A C T G A C T G C G T A A C T G A C T G A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer

Match Rank:10
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CTGAGGAGGTCA
NRBCARRGGTCA
A G T C A C G T A C T G C G T A A C T G A C T G C G T A A C T G A C T G A C G T A G T C C G T A
T C A G T C A G A C G T G T A C G C T A T C A G C T G A A C T G A C T G A G C T A G T C C G T A