Information for 4-CTTGTCCTGC (Motif 21)

A G T C A C G T A C G T A C T G A C G T A G T C A G T C A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C C G T A A C T G A C T G C G T A A G T C C G T A C G T A A C T G
p-value:1e-3
log p-value:-8.328e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif7.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets195.0 +/- 0.0bp
Average Position of motif in Background130.9 +/- 24.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CTTGTCCTGC
TGACCTTGACCT--
A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C G T A G T C A G T C A C G T A C T G A G T C
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T

PB0200.1_Zfp187_2/Jaspar

Match Rank:2
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CTTGTCCTGC-
GAGCCCTTGTCCCTAA
A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C G T A G T C A G T C A C G T A C T G A G T C A C G T
A C T G C T G A C T A G G T A C A G T C A G T C G A C T A G C T T C A G G A C T G A T C A G T C G T A C G A C T G C A T T C A G

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:3
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CTTGTCCTGC
TGACCTTGACCT--
A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C G T A G T C A G T C A C G T A C T G A G T C
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CTTGTCCTGC
--TGACCTYA
A G T C A C G T A C G T A C T G A C G T A G T C A G T C A C G T A C T G A G T C
A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

ZNF135/MA1587.1/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTTGTCCTGC---
CCTCGACCTCCTGA
A C G T A G T C A C G T A C G T A C T G A C G T A G T C A G T C A C G T A C T G A G T C A C G T A C G T A C G T
A G T C A G T C A G C T A G T C T C A G C T G A T A G C A G T C A G C T A T G C G A T C G A C T T C A G C T G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CTTGTCCTGC
--TGACCT--
A G T C A C G T A C G T A C T G A C G T A G T C A G T C A C G T A C T G A G T C
A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CTTGTCCTGC
CCATTGTTTT--
A C G T A C G T A G T C A C G T A C G T A C T G A C G T A G T C A G T C A C G T A C T G A G T C
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T A C G T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CTTGTCCTGC-
-ATTTCCTGTN
A G T C A C G T A C G T A C T G A C G T A G T C A G T C A C G T A C T G A G T C A C G T
A C G T T C G A A G C T A C G T A C G T A G T C A G T C A C G T A T C G G A C T A T C G

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:9
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CTTGTCCTGC----
---NNCCTGCTGNG
A G T C A C G T A C G T A C T G A C G T A G T C A G T C A C G T A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C A T G C T G A C T A G C A G C T T C A G A T G C A C G T T C A G A G C T A T C G

NR4A2/MA0160.1/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CTTGTCCTGC
-GTGACCTT-
A G T C A C G T A C G T A C T G A C G T A G T C A G T C A C G T A C T G A G T C
A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T