Information for 13-CAAAGGACTTAA (Motif 13)

A G T C C G T A C G T A C G T A A C T G A C T G C G T A A G T C A C G T A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A C G T A A C T G A C G T A G T C A G T C A C G T A C G T A C G T A C T G
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.0 +/- 0.0bp
Average Position of motif in Background175.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0117.1_Nkx3-1/Jaspar

Match Rank:1
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--CAAAGGACTTAA---
TACTAAGTACTTAAATG
A C G T A C G T A G T C C G T A C G T A C G T A A C T G A C T G C G T A A G T C A C G T A C G T C G T A C G T A A C G T A C G T A C G T
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

PH0112.1_Nkx2-3/Jaspar

Match Rank:2
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--CAAAGGACTTAA--
CNTTAAGTACTTAANG
A C G T A C G T A G T C C G T A C G T A C G T A A C T G A C T G C G T A A G T C A C G T A C G T C G T A C G T A A C G T A C G T
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CAAAGGACTTAA
--AAGCACTTAA
A G T C C G T A C G T A C G T A A C T G A C T G C G T A A G T C A C G T A C G T C G T A C G T A
A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

PH0116.1_Nkx2-9/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CAAAGGACTTAA---
TTTTAAGTACTTAAATT
A C G T A C G T A G T C C G T A C G T A C G T A A C T G A C T G C G T A A G T C A C G T A C G T C G T A C G T A A C G T A C G T A C G T
C G A T G A C T G C A T C G A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C G T A G C T A C G A T G A C T

Nkx3-2/MA0122.3/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CAAAGGACTTAA-
ATAACCACTTAAA
A G T C C G T A C G T A C G T A A C T G A C T G C G T A A G T C A C G T A C G T C G T A C G T A A C G T
C G T A C G A T C G T A C G T A T G A C G A T C G C T A G T A C G C A T G A C T G C T A C G T A G C T A

PH0004.1_Nkx3-2/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CAAAGGACTTAA----
CATAACCACTTAACAAC
A C G T A G T C C G T A C G T A C G T A A C T G A C T G C G T A A G T C A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

PB0166.1_Sox12_2/Jaspar

Match Rank:7
Score:0.62
Offset:-7
Orientation:forward strand
Alignment:-------CAAAGGACTTAA
AAACAGACAAAGGAAT---
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C T G A C T G C G T A A G T C A C G T A C G T C G T A C G T A
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:8
Score:0.61
Offset:-7
Orientation:forward strand
Alignment:-------CAAAGGACTTAA
AGAAGAACAAAGGACTA--
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C T G A C T G C G T A A G T C A C G T A C G T C G T A C G T A
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:9
Score:0.60
Offset:-7
Orientation:forward strand
Alignment:-------CAAAGGACTTAA
ATAAGAACAAAGGACTA--
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C T G A C T G C G T A A G T C A C G T A C G T C G T A C G T A
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T A C G T

ISL2/MA0914.1/Jaspar

Match Rank:10
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CAAAGGACTTAA
----GCACTTAA
A G T C C G T A C G T A C G T A A C T G A C T G C G T A A G T C A C G T A C G T C G T A C G T A
A C G T A C G T A C G T A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A