Information for 1-CTAACACGCG (Motif 1)

A G T C A C G T C G T A C G T A A G T C C G T A A G T C A C T G A G T C A C T G
Reverse Opposite:
A G T C A C T G A G T C A C T G A C G T A C T G A C G T A C G T C G T A A C T G
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets116.0 +/- 0.0bp
Average Position of motif in Background59.5 +/- 43.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:1
Score:0.71
Offset:4
Orientation:reverse strand
Alignment:CTAACACGCG
----CACGCA
A G T C A C G T C G T A C G T A A G T C C G T A A G T C A C T G A G T C A C T G
A C G T A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A

CLOCK/MA0819.1/Jaspar

Match Rank:2
Score:0.68
Offset:2
Orientation:forward strand
Alignment:CTAACACGCG--
--AACACGTGTT
A G T C A C G T C G T A C G T A A G T C C G T A A G T C A C T G A G T C A C T G A C G T A C G T
A C G T A C G T C T G A T C G A G T A C T C G A G A T C C T A G A C G T A C T G A G C T G A C T

HES1/MA1099.2/Jaspar

Match Rank:3
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CTAACACGCG--
--GNCACGTGCC
A G T C A C G T C G T A C G T A A G T C C G T A A G T C A C T G A G T C A C T G A C G T A C G T
A C G T A C G T T A C G T A G C G T A C C T G A A G T C C T A G G A C T C A T G G T A C T G A C

MAX/MA0058.3/Jaspar

Match Rank:4
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CTAACACGCG--
--ACCACGTGCT
A G T C A C G T C G T A C G T A A G T C C G T A A G T C A C T G A G T C A C T G A C G T A C G T
A C G T A C G T T G C A T G A C G T A C C T G A A G T C T C A G G A C T A C T G A T G C G A C T

HES6/MA1493.1/Jaspar

Match Rank:5
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CTAACACGCG--
--AACACGTGCC
A G T C A C G T C G T A C G T A A G T C C G T A A G T C A C T G A G T C A C T G A C G T A C G T
A C G T A C G T C T G A C G T A A G T C T G C A A T G C T C A G G C A T A T C G A T G C T G A C

Mlxip/MA0622.1/Jaspar

Match Rank:6
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CTAACACGCG-
---ACACGTGC
A G T C A C G T C G T A C G T A A G T C C G T A A G T C A C T G A G T C A C T G A C G T
A C G T A C G T A C G T G T C A A G T C C G T A A G T C A C T G A C G T A C T G T A G C

TCFL5/MA0632.2/Jaspar

Match Rank:7
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CTAACACGCG---
---TCACGCGCAC
A G T C A C G T C G T A C G T A A G T C C G T A A G T C A C T G A G T C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C C T G A A G T C C T A G G A T C T C A G T A G C G T C A G T A C

MNT/MA0825.1/Jaspar

Match Rank:8
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CTAACACGCG--
--ACCACGTGCC
A G T C A C G T C G T A C G T A A G T C C G T A A G T C A C T G A G T C A C T G A C G T A C G T
A C G T A C G T C T G A T A G C G T A C C G T A A G T C C T A G A C G T A C T G T G A C G A T C

Npas2/MA0626.1/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CTAACACGCG--
--NACACGTGCN
A G T C A C G T C G T A C G T A A G T C C G T A A G T C A C T G A G T C A C T G A C G T A C G T
A C G T A C G T A C T G T G C A A G T C C G T A A G T C A C T G A C G T A C T G A T G C G A T C

NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CTAACACGCG
--NVCACGTG
A G T C A C G T C G T A C G T A A G T C C G T A A G T C A C T G A G T C A C T G
A C G T A C G T C G A T T G C A G T A C C G T A A G T C C T A G G A C T C A T G