Information for 4-GGCTACCACT (Motif 12)

A C T G A C T G A G T C A C G T C G T A A G T C A G T C C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G A C G T A C T G A C T G A C G T C G T A A C T G A G T C A G T C
p-value:1e-3
log p-value:-8.553e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif18.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets111.0 +/- 0.0bp
Average Position of motif in Background98.2 +/- 81.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZBTB7C/MA0695.1/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GGCTACCACT---
-GCGACCACCGAA
A C T G A C T G A G T C A C G T C G T A A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T C T A G T A G C C T A G G T C A G T A C A G T C G T C A G T A C G A T C T C A G G T C A T G C A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:2
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GGCTACCACT---
---MRSCACTYAA
A C T G A C T G A G T C A C G T C G T A A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

NKX2-3/MA0672.1/Jaspar

Match Rank:3
Score:0.62
Offset:4
Orientation:forward strand
Alignment:GGCTACCACT----
----ACCACTTGAA
A C T G A C T G A G T C A C G T C G T A A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GGCTACCACT-
TGTCTGDCACCT
A C G T A C T G A C T G A G T C A C G T C G T A A G T C A G T C C G T A A G T C A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

PB0154.1_Osr1_2/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GGCTACCACT---
ACATGCTACCTAATAC
A C G T A C G T A C G T A C T G A C T G A G T C A C G T C G T A A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T
C T G A G A T C G C T A G A C T T C A G G A T C A G C T C G T A G T A C G A T C G C A T T C G A G T C A C G A T G T C A T G A C

Nkx3-1/MA0124.2/Jaspar

Match Rank:6
Score:0.61
Offset:4
Orientation:forward strand
Alignment:GGCTACCACT---
----ACCACTTAA
A C T G A C T G A G T C A C G T C G T A A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GGCTACCACT-
CTGTCTGTCACCT
A C G T A C G T A C T G A C T G A G T C A C G T C G T A A G T C A G T C C G T A A G T C A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

PB0059.1_Six6_1/Jaspar

Match Rank:8
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GGCTACCACT---
AATAGGGTATCATATAT
A C G T A C G T A C G T A C G T A C T G A C T G A G T C A C G T C G T A A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T
C T G A G C T A C G A T T C G A C T A G A C T G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C G T A C G A T G C T A G A C T

PB0156.1_Plagl1_2/Jaspar

Match Rank:9
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------GGCTACCACT-
GCTGGGGGGTACCCCTT
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C A C G T C G T A A G T C A G T C C G T A A G T C A C G T A C G T
C T A G A G T C G C A T C T A G C A T G A C T G C T A G A C T G A C T G A C G T C T G A G A T C G T A C G T A C G A T C G A C T C G A T

PH0162.1_Six2/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GGCTACCACT---
AATGGGGTATCACGTTT
A C G T A C G T A C G T A C G T A C T G A C T G A G T C A C G T C G T A A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T
C T G A G C T A C A G T T C A G C T A G A C T G C T A G A C G T C T G A A C G T G A T C C T G A G A T C C A G T G C A T G A C T C A G T