Information for 3-CACCATCAAT (Motif 3)

A G T C C G T A A G T C A G T C C G T A A C G T A G T C C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T A C T G C G T A A C G T A C T G A C T G A C G T A C T G
p-value:1e-4
log p-value:-1.103e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets165.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0144.1_Lef1_2/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CACCATCAAT------
GAAGATCAATCACTTA
A G T C C G T A A G T C A G T C C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T A C G C G T A T C G A T A C G G C T A C G A T A G T C C G T A C T G A C A G T G A T C C T G A G T A C A G C T G C A T C G T A

MEIS1(var.2)/MA1639.1/Jaspar

Match Rank:2
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CACCATCAAT----
-GTCATCAATCATT
A G T C C G T A A G T C A G T C C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C T A G G A C T G A T C C T G A C A G T G T A C G T C A G C T A G C A T G T A C G C T A G C A T G C A T

PH0134.1_Pbx1/Jaspar

Match Rank:3
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--CACCATCAAT-----
TCACCCATCAATAAACA
A C G T A C G T A G T C C G T A A G T C A G T C C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:4
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:CACCATCAAT--
--YCATCMATCA
A G T C C G T A A G T C A G T C C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C T G A A C G T G A T C G T C A C T G A A C G T G A T C G C T A

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:5
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CACCATCAAT--
--TCATCAATCA
A G T C C G T A A G T C A G T C C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

PBX1/MA0070.1/Jaspar

Match Rank:6
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CACCATCAAT----
--CCATCAATCAAA
A G T C C G T A A G T C A G T C C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:7
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CACCATCAAT------
GAAGATCAATCACTAA
A G T C C G T A A G T C A G T C C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T A C G C T A G T C G A T A C G G C T A G C A T A G T C C G T A C T G A C A G T G A T C C T G A A T G C A C G T G C T A C G T A

Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer

Match Rank:8
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CACCATCAAT-
---RRTCAATA
A G T C C G T A A G T C A G T C C G T A A C G T A G T C C G T A C G T A A C G T A C G T
A C G T A C G T A C G T C T A G C T G A A G C T G T A C C T G A C G T A A C G T C G T A

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:9
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CACCATCAAT
HNRAATCAAT
A G T C C G T A A G T C A G T C C G T A A C G T A G T C C G T A C G T A A C G T
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T

CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer

Match Rank:10
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CACCATCAAT-
-NTNATCGATA
A G T C C G T A A G T C A G T C C G T A A C G T A G T C C G T A C G T A A C G T A C G T
A C G T G C A T A G C T C A G T T C G A A G C T G A T C C T A G T C G A A C G T T G C A