Information for 3-AAGCATGACAAT (Motif 5)

C G T A C G T A A C T G A G T C C G T A A C G T A C T G C G T A A G T C C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T A C T G A C G T A G T C C G T A A C G T A C T G A G T C A C G T A C G T
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets31.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17/MA0078.1/Jaspar

Match Rank:1
Score:0.66
Offset:6
Orientation:reverse strand
Alignment:AAGCATGACAAT---
------GACAATGNN
C G T A C G T A A C T G A G T C C G T A A C G T A C T G C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--AAGCATGACAAT-
ATTTGCATAACAAAG
A C G T A C G T C G T A C G T A A C T G A G T C C G T A A C G T A C T G C G T A A G T C C G T A C G T A A C G T A C G T
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

MEIS1/MA0498.2/Jaspar

Match Rank:3
Score:0.64
Offset:4
Orientation:forward strand
Alignment:AAGCATGACAAT
----TTGACAG-
C G T A C G T A A C T G A G T C C G T A A C G T A C T G C G T A A G T C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T

Pax2/MA0067.1/Jaspar

Match Rank:4
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:AAGCATGACAAT
--NCGTGACN--
C G T A C G T A A C T G A G T C C G T A A C G T A C T G C G T A A G T C C G T A C G T A A C G T
A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T A C G T

PB0165.1_Sox11_2/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AAGCATGACAAT---
-NNCNNAACAATTNT
C G T A C G T A A C T G A G T C C G T A A C G T A C T G C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------AAGCATGACAAT
GCAGCCAAGCGTGACN--
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A G T C C G T A A C G T A C T G C G T A A G T C C G T A C G T A A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C A C G T A C G T

PAX5/MA0014.3/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AAGCATGACAAT
GAGCGTGACCCC
C G T A C G T A A C T G A G T C C G T A A C G T A C T G C G T A A G T C C G T A C G T A A C G T
T C A G C T G A T A C G A G T C T C A G G C A T T A C G C T G A T A G C A G T C G T A C A G T C

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:AAGCATGACAAT
---RHTGWCAR-
C G T A C G T A A C T G A G T C C G T A A C G T A C T G C G T A A G T C C G T A C G T A A C G T
A C G T A C G T A C G T C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AAGCATGACAAT-
ATTTGCATAACAATG
A C G T A C G T C G T A C G T A A C T G A G T C C G T A A C G T A C T G C G T A A G T C C G T A C G T A A C G T A C G T
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:AAGCATGACAAT--
----RNAACAATGG
C G T A C G T A A C T G A G T C C G T A A C G T A C T G C G T A A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G