Information for 2-TGGACTCGGAGA (Motif 3)

A C G T A C T G A C T G C G T A A G T C A C G T A G T C A C T G A C T G C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T A G T C A G T C A C T G C G T A A C T G A C G T A G T C A G T C C G T A
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets21.0 +/- 0.0bp
Average Position of motif in Background188.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.2/Jaspar

Match Rank:1
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TGGACTCGGAGA
NNTGGACTTTGNN-
A C G T A C G T A C G T A C T G A C T G C G T A A G T C A C G T A G T C A C T G A C T G C G T A A C T G C G T A
G A C T A G T C G C A T C T A G C T A G G T C A T G A C G A C T A G C T A G C T C T A G T C A G G T C A A C G T

HNF4A/MA0114.4/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TGGACTCGGAGA
NNTGGACTTTGNN-
A C G T A C G T A C G T A C T G A C T G C G T A A G T C A C G T A G T C A C T G A C T G C G T A A C T G C G T A
G A C T G A C T G C A T C T A G C T A G G T C A T G A C G A C T A G C T A C G T C T A G C T A G G T C A A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:3
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TGGACTCGGAGA
NNATTGGACTTTNGNN
A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A G T C A C G T A G T C A C T G A C T G C G T A A C T G C G T A
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C

VDR/MA0693.2/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TGGACTCGGAGA
TGAACTCA----
A C G T A C T G A C T G C G T A A G T C A C G T A G T C A C T G A C T G C G T A A C T G C G T A
A G C T C T A G G T C A T G C A T G A C G A C T A G T C C T G A A C G T A C G T A C G T A C G T

RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer

Match Rank:5
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TGGACTCGGAGA
TTGAMCTTTG---
A C G T A C G T A C T G A C T G C G T A A G T C A C G T A G T C A C T G A C T G C G T A A C T G C G T A
A G C T A G C T C A T G C T G A G T A C A G T C A G C T A G C T C A G T C T A G A C G T A C G T A C G T

RXRA::VDR/MA0074.1/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TGGACTCGGAGA---
TGAACCCGATGACCC
A C G T A C T G A C T G C G T A A G T C A C G T A G T C A C T G A C T G C G T A A C T G C G T A A C G T A C G T A C G T
A G C T C T A G C G T A C G T A A G T C A G C T A G T C A C T G C G A T A G C T C T A G C G T A G T A C A G T C A G T C

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:7
Score:0.53
Offset:1
Orientation:forward strand
Alignment:TGGACTCGGAGA------
-CTACTTGGATACGGAAT
A C G T A C T G A C T G C G T A A G T C A C G T A G T C A C T G A C T G C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A T G C A C G T T C G A A T G C C A G T G A C T T C A G A C T G C G T A A C G T C G T A G A T C T A C G T A C G C G T A C G T A G C A T

NR1I2/MA1533.1/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TGGACTCGGAGA----
ATGAACTCGATGAACTC
A C G T A C G T A C T G A C T G C G T A A G T C A C G T A G T C A C T G A C T G C G T A A C T G C G T A A C G T A C G T A C G T A C G T
C T G A A G C T C T A G T G C A G T C A T G A C G A C T A T G C T C A G C T G A A G C T C T A G T G C A T G C A A G T C A G C T A G T C

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TGGACTCGGAGA
CTGACCTTTG---
A C G T A C G T A C T G A C T G C G T A A G T C A C G T A G T C A C T G A C T G C G T A A C T G C G T A
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T

PB0044.1_Mtf1_1/Jaspar

Match Rank:10
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----TGGACTCGGAGA
NNTTTGCACACGGCCC
A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A G T C A C G T A G T C A C T G A C T G C G T A A C T G C G T A
C G A T G A C T C A G T A C G T G A C T A C T G G A T C C T G A A G T C G C T A G A T C A C T G C T A G G A T C T A G C G T A C