Information for 4-TVCAAACTGGVH (Motif 4)

A C G T T A G C A G T C C T G A C G T A G T C A A T G C A C G T A C T G C T A G T A C G G A T C
Reverse Opposite:
C A T G A C G T A G T C A G T C C G T A A T C G A C G T A C G T A G C T C T A G A C T G C G T A
p-value:1e-5
log p-value:-1.332e+01
Information Content per bp:1.720
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif44.44%
Number of Background Sequences with motif935.4
Percentage of Background Sequences with motif1.08%
Average Position of motif in Targets111.0 +/- 45.3bp
Average Position of motif in Background99.6 +/- 72.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SIX2/MA1119.1/Jaspar

Match Rank:1
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TVCAAACTGGVH-
AACTGAAACCTGATAC
A C G T A C G T A C G T A C G T T A G C A G T C C T G A C G T A G T C A A T G C A C G T A C T G C T A G T A C G G A T C A C G T
G C T A G C T A T G A C C G A T C A T G G C T A G T C A C T G A G A T C G T A C G C A T C T A G C G T A A C G T G T C A G A T C

SIX1/MA1118.1/Jaspar

Match Rank:2
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TVCAAACTGGVH
-GTAACCTGATA
A C G T T A G C A G T C C T G A C G T A G T C A A T G C A C G T A C T G C T A G T A C G G A T C
A C G T C A T G C G A T G C T A C G T A G A T C G T A C G C A T C T A G C G T A A C G T G T C A

YY1/MA0095.2/Jaspar

Match Rank:3
Score:0.59
Offset:2
Orientation:forward strand
Alignment:TVCAAACTGGVH--
--CAAGATGGCGGC
A C G T T A G C A G T C C T G A C G T A G T C A A T G C A C G T A C T G C T A G T A C G G A T C A C G T A C G T
A C G T A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

MYB/MA0100.3/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TVCAAACTGGVH
-ACCAACTGTC-
A C G T T A G C A G T C C T G A C G T A G T C A A T G C A C G T A C T G C T A G T A C G G A T C
A C G T G T C A A G T C A G T C C T G A G C T A A G T C A C G T T C A G G A C T G T A C A C G T

PB0149.1_Myb_2/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TVCAAACTGGVH---
CGACCAACTGCCATGC
A C G T A C G T T A G C A G T C C T G A C G T A G T C A A T G C A C G T A C T G C T A G T A C G G A T C A C G T A C G T A C G T
A G T C C A T G G T C A A G T C G A T C C G T A G T C A A G T C A G C T T C A G G A T C G A T C C T G A A G C T A T C G A G T C

Nkx3-1/MA0124.2/Jaspar

Match Rank:6
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TVCAAACTGGVH
--TTAAGTGGT-
A C G T T A G C A G T C C T G A C G T A G T C A A T G C A C G T A C T G C T A G T A C G G A T C
A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TVCAAACTGGVH
-NTCAAGTGGN-
A C G T T A G C A G T C C T G A C G T A G T C A A T G C A C G T A C T G C T A G T A C G G A T C
A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T

ZFP42/MA1651.1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TVCAAACTGGVH-------
GTTCCAAAATGGCTGCCTCCG
A C G T A C G T A C G T T A G C A G T C C T G A C G T A G T C A A T G C A C G T A C T G C T A G T A C G G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A T C G G C A T G C A T G T A C G T A C C T G A C G T A T C G A C T G A A G C T T A C G A C T G G T A C A C G T A T C G G A T C A G T C G A C T A T G C A T G C T C A G

Dmrt1/MA1603.1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TVCAAACTGGVH
GATACAAAGTATC-
A C G T A C G T A C G T T A G C A G T C C T G A C G T A G T C A A T G C A C G T A C T G C T A G T A C G G A T C
C T A G G C T A G C A T C G T A G A T C G C T A G C T A C G T A C T A G C G A T C G T A C G A T G T A C A C G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TVCAAACTGGVH--
AATNTTAAGTGGNTNN
A C G T A C G T A C G T T A G C A G T C C T G A C G T A G T C A A T G C A C G T A C T G C T A G T A C G G A T C A C G T A C G T
C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A