Information for 20-ATAATTCAATGG (Motif 20)

C G T A A C G T C G T A C G T A A C G T A C G T A G T C C G T A C G T A A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A A C G T A C G T A C T G C G T A C G T A A C G T A C G T C G T A A C G T
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets90.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0068.1_Sox1_1/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--ATAATTCAATGG--
AATCAATTCAATAATT
A C G T A C G T C G T A A C G T C G T A C G T A A C G T A C G T A G T C C G T A C G T A A C G T A C T G A C T G A C G T A C G T
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

PB0005.1_Bbx_1/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:ATAATTCAATGG----
-TAATTCAATGAAGTG
C G T A A C G T C G T A C G T A A C G T A C G T A G T C C G T A C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T G C A T G C T A C T G A C G A T C G A T T G A C G C T A C G T A C G A T A C T G C G T A G C T A A T C G G C A T C T A G

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----ATAATTCAATGG
ATGCATAATTCA----
A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C G T A C G T A G T C C G T A C G T A A C G T A C T G A C T G
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T A C G T A C G T A C G T

PBX2/MA1113.2/Jaspar

Match Rank:4
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---ATAATTCAATGG
GTCATAAATCATT--
A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C G T A C G T A G T C C G T A C G T A A C G T A C T G A C T G
T C A G G A C T G T A C C T G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G A C T G C A T A C G T A C G T

Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:ATAATTCAATGG
TTAATTNAATTA
C G T A A C G T C G T A C G T A A C G T A C G T A G T C C G T A C G T A A C G T A C T G A C T G
C G A T A C G T C G T A C G T A A C G T A G C T T G C A C T G A C G T A A C G T A C G T C G T A

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:6
Score:0.64
Offset:2
Orientation:forward strand
Alignment:ATAATTCAATGG
--ACWTCAAAGG
C G T A A C G T C G T A C G T A A C G T A C G T A G T C C G T A C G T A A C G T A C T G A C T G
A C G T A C G T C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G

MF0010.1_Homeobox_class/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-ATAATTCAATGG
AATAATT------
A C G T C G T A A C G T C G T A C G T A A C G T A C G T A G T C C G T A C G T A A C G T A C T G A C T G
G C T A C G T A G C A T C T G A C T G A C G A T C G A T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:8
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----ATAATTCAATGG
NNCCATAAATCATNN-
A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C G T A C G T A G T C C G T A C G T A A C G T A C T G A C T G
C T G A T C A G G A T C G T A C T C G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G C A T G C A T G A C T A C G T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:ATAATTCAATGG
HNRAATCAAT--
C G T A A C G T C G T A C G T A A C G T A C G T A G T C C G T A C G T A A C G T A C T G A C T G
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T

PHOX2A/MA0713.1/Jaspar

Match Rank:10
Score:0.62
Offset:1
Orientation:forward strand
Alignment:ATAATTCAATGG
-TAATTTAATTA
C G T A A C G T C G T A C G T A A C G T A C G T A G T C C G T A C G T A A C G T A C T G A C T G
A C G T G C A T C T G A C T G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A