Information for 5-GATGTATC (Motif 15)

A C T G C G T A A C G T A C T G A C G T C G T A A C G T A G T C
Reverse Opposite:
A C T G C G T A A C G T C G T A A G T C C G T A A C G T A G T C
p-value:1e-2
log p-value:-5.647e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif329.8
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets48.0 +/- 0.0bp
Average Position of motif in Background92.0 +/- 71.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

DMRT3/MA0610.1/Jaspar

Match Rank:1
Score:0.84
Offset:0
Orientation:forward strand
Alignment:GATGTATC---
AATGTATCAAT
A C T G C G T A A C G T A C T G A C G T C G T A A C G T A G T C A C G T A C G T A C G T
G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T

DMRTC2/MA1479.1/Jaspar

Match Rank:2
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:GATGTATC----
AATGTATCAATT
A C T G C G T A A C G T A C T G A C G T C G T A A C G T A G T C A C G T A C G T A C G T A C G T
G T C A C G T A G C A T A T C G C A G T C G T A C A G T A T G C T G C A C G T A G C A T C G A T

DMRTA2/MA1478.1/Jaspar

Match Rank:3
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GATGTATC----
AATGTAACAATT
A C T G C G T A A C G T A C T G A C G T C G T A A C G T A G T C A C G T A C G T A C G T A C G T
T G C A G C T A G C A T C T A G G A C T C G T A C G T A T G A C T C G A C G T A G C A T C G A T

PB0163.1_Six6_2/Jaspar

Match Rank:4
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GATGTATC-----
ATGGGATATATCCGCCT
A C G T A C G T A C G T A C G T A C T G C G T A A C G T A C T G A C G T C G T A A C G T A G T C A C G T A C G T A C G T A C G T A C G T
T G C A C G A T A T C G T A C G A C T G T C G A G A C T C T G A A C G T G T C A A G C T G T A C A G T C T C A G G A T C G A T C C A G T

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:5
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GATGTATC---
AAATGATTTATGGCT
A C G T A C G T A C G T A C G T A C T G C G T A A C G T A C T G A C G T C G T A A C G T A G T C A C G T A C G T A C G T
C T G A C G T A C G T A C G A T C T A G C G T A C G A T C G A T C A G T T C G A A G C T C A T G C T A G A G T C G A C T

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GATGTATC-
TGATKGATGR
A C G T A C T G C G T A A C G T A C T G A C G T C G T A A C G T A G T C A C G T
C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G

PBX2/MA1113.2/Jaspar

Match Rank:7
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GATGTATC--
NNTGATTTATGNN
A C G T A C G T A C G T A C T G C G T A A C G T A C T G A C G T C G T A A C G T A G T C A C G T A C G T
C G T A C T G A C G A T C T A G C G T A C G A T C G A T C A G T T C G A G A C T C A T G C T G A A G T C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:8
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GATGTATC--
ATGATKGATGRC
A C G T A C G T A C T G C G T A A C G T A C T G A C G T C G T A A C G T A G T C A C G T A C G T
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

PH0134.1_Pbx1/Jaspar

Match Rank:9
Score:0.62
Offset:-8
Orientation:reverse strand
Alignment:--------GATGTATC-
NNNNNATTGATGNGTGN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C G T A C T G A C G T C G T A A C G T A G T C A C G T
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GATGTATC---
TGATTTATGGCC
A C G T A C T G C G T A A C G T A C T G A C G T C G T A A C G T A G T C A C G T A C G T A C G T
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C