Information for 11-CAGACCTACA (Motif 28)

A G T C C G T A A C T G C G T A A G T C A G T C A C G T C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T C G T A A C T G A C T G A C G T A G T C A C G T A C T G
p-value:1e-3
log p-value:-7.387e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif21.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets190.0 +/- 0.0bp
Average Position of motif in Background94.7 +/- 150.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CAGACCTACA----
TTGACCTANTTATN
A G T C C G T A A C T G C G T A A G T C A G T C A C G T C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

TBX15/MA0803.1/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CAGACCTACA
TCACACCT---
A C G T A G T C C G T A A C T G C G T A A G T C A G T C A C G T C G T A A G T C C G T A
G A C T T G A C T C G A A T G C T G C A A G T C G A T C G A C T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CAGACCTACA
CCAGACRSVB-
A C G T A G T C C G T A A C T G C G T A A G T C A G T C A C G T C G T A A G T C C G T A
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

RORC/MA1151.1/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CAGACCTACA---
-TGACCTANTTAN
A G T C C G T A A C T G C G T A A G T C A G T C A C G T C G T A A G T C C G T A A C G T A C G T A C G T
A C G T G A C T T C A G T G C A G A T C G T A C A G C T T G C A T A G C G C A T C G A T G C T A G A C T

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:5
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CAGACCTACA--
NNHYTGACCTAGWTT
A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C A G T C A C G T C G T A A G T C C G T A A C G T A C G T
A C G T G A T C G A C T G A T C A C G T A C T G T C G A A G T C A G T C A G C T C T G A T C A G C G A T C G A T G C A T

ZKSCAN1/MA1585.1/Jaspar

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CAGACCTACA--
--CACCTACTAT
A G T C C G T A A C T G C G T A A G T C A G T C A C G T C G T A A G T C C G T A A C G T A C G T
A C G T A C G T A T G C T C G A G T A C T A G C A C G T C G T A G A T C A C G T T C G A A G C T

RORA/MA0071.1/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CAGACCTACA-
-TGACCTTGAT
A G T C C G T A A C T G C G T A A G T C A G T C A C G T C G T A A G T C C G T A A C G T
A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

TBX1/MA0805.1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CAGACCTACA
TCACACCT---
A C G T A G T C C G T A A C T G C G T A A G T C A G T C A C G T C G T A A G T C C G T A
A C G T T G A C C T G A A T G C T C G A A G T C A G T C G A C T A C G T A C G T A C G T

TBX20/MA0689.1/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CAGACCTACA
CTTCACACCTA--
A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C A G T C A C G T C G T A A G T C C G T A
A G T C G C A T G C A T G T A C G T C A T G A C G T C A G T A C A G T C G A C T G C T A A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CAGACCTACA
CNAGGCCT---
A C G T A G T C C G T A A C T G C G T A A G T C A G T C A C G T C G T A A G T C C G T A
A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T