Information for 21-CCTATTAAACTC (Motif 20)

A G T C A G T C A C G T C G T A A C G T A C G T C G T A C G T A C G T A A G T C A C G T A G T C
Reverse Opposite:
A C T G C G T A A C T G A C G T A C G T A C G T C G T A C G T A A C G T C G T A A C T G A C T G
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets135.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CCTATTAAACTC
NGCAATTAAA---
A C G T A G T C A G T C A C G T C G T A A C G T A C G T C G T A C G T A C G T A A G T C A C G T A G T C
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:2
Score:0.68
Offset:3
Orientation:forward strand
Alignment:CCTATTAAACTC
---ATTAAA---
A G T C A G T C A C G T C G T A A C G T A C G T C G T A C G T A C G T A A G T C A C G T A G T C
A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CCTATTAAACTC-
CTACCAATAAAATTCT
A C G T A C G T A C G T A G T C A G T C A C G T C G T A A C G T A C G T C G T A C G T A C G T A A G T C A C G T A G T C A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CCTATTAAACTC
NCYAATAAAA---
A C G T A G T C A G T C A C G T C G T A A C G T A C G T C G T A C G T A C G T A A G T C A C G T A G T C
C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CCTATTAAACTC-
AACCCAATAAAATTCG
A C G T A C G T A C G T A G T C A G T C A C G T C G T A A C G T A C G T C G T A C G T A C G T A A G T C A C G T A G T C A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

HOXA13/MA0650.2/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCTATTAAACTC
CCCAATAAAAC--
A C G T A G T C A G T C A C G T C G T A A C G T A C G T C G T A C G T A C G T A A G T C A C G T A G T C
T G A C T A G C A G T C G T C A C G T A A C G T C T G A C T G A C G T A G T C A G T A C A C G T A C G T

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCTATTAAACTC
CYHATAAAAN--
A G T C A G T C A C G T C G T A A C G T A C G T C G T A C G T A C G T A A G T C A C G T A G T C
T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C A C G T A C G T

LHX2/MA0700.2/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCTATTAAACTC
AACCAATTAAT---
A C G T A C G T A G T C A G T C A C G T C G T A A C G T A C G T C G T A C G T A C G T A A G T C A C G T A G T C
C G T A C G T A A T G C G A T C G C T A G C T A C G A T C G A T G C T A C G T A G C A T A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CCTATTAAACTC
CCYMATAAAA---
A C G T A G T C A G T C A C G T C G T A A C G T A C G T C G T A C G T A C G T A A G T C A C G T A G T C
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T

BSX/MA0876.1/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCTATTAAACTC
CCAATTAA----
A G T C A G T C A C G T C G T A A C G T A C G T C G T A C G T A C G T A A G T C A C G T A G T C
T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A A C G T A C G T A C G T A C G T