Information for 3-GTTGCTTTAAGG (Motif 3)

A C T G A C G T A C G T A C T G A G T C A C G T A C G T A C G T C G T A C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T A C G T C G T A C G T A C G T A A C T G A G T C C G T A C G T A A G T C
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets152.0 +/- 0.0bp
Average Position of motif in Background98.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RFX7/MA1554.1/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GTTGCTTTAAGG
CGTTGCTAT----
A C G T A C T G A C G T A C G T A C T G A G T C A C G T A C G T A C G T C G T A C G T A A C T G A C T G
A T G C A T C G A G C T A G C T C T A G A T G C A G C T C T G A G A C T A C G T A C G T A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GTTGCTTTAAGG--
--TGATTTATGGCC
A C T G A C G T A C G T A C T G A G T C A C G T A C G T A C G T C G T A C G T A A C T G A C T G A C G T A C G T
A C G T A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

FOXE1/MA1487.1/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GTTGCTTTAAGG
NTTGTTTATTTAAGG
A C G T A C G T A C G T A C T G A C G T A C G T A C T G A G T C A C G T A C G T A C G T C G T A C G T A A C T G A C T G
C T G A G C A T A G C T A C T G A C G T A C G T A C G T C T G A A G C T G C A T A G C T C G T A T C G A A C T G T A C G

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:4
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GTTGCTTTAAGG--
--DGWTTTATGRCN
A C T G A C G T A C G T A C T G A G T C A C G T A C G T A C G T C G T A C G T A A C T G A C T G A C G T A C G T
A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

PBX2/MA1113.2/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GTTGCTTTAAGG-
NNTGATTTATGNN
A C T G A C G T A C G T A C T G A G T C A C G T A C G T A C G T C G T A C G T A A C T G A C T G A C G T
C G T A C T G A C G A T C T A G C G T A C G A T C G A T C A G T T C G A G A C T C A T G C T G A A G T C

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GTTGCTTTAAGG--
AAATGATTTATGGCT
A C G T A C T G A C G T A C G T A C T G A G T C A C G T A C G T A C G T C G T A C G T A A C T G A C T G A C G T A C G T
C T G A C G T A C G T A C G A T C T A G C G T A C G A T C G A T C A G T T C G A A G C T C A T G C T A G A G T C G A C T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GTTGCTTTAAGG
NCCGTTGCTANGNGN
A C G T A C G T A C G T A C T G A C G T A C G T A C T G A G T C A C G T A C G T A C G T C G T A C G T A A C T G A C T G
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GTTGCTTTAAGG---
-NTGCCCTAGGGCAA
A C T G A C G T A C G T A C T G A G T C A C G T A C G T A C G T C G T A C G T A A C T G A C T G A C G T A C G T A C G T
A C G T C G T A G A C T T A C G A T G C A G T C A G T C A G C T T C G A T C A G C T A G A T C G A T G C C T G A G C T A

RFX1/MA0509.2/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GTTGCTTTAAGG
CTGTTGCTATGGCA
A C G T A C G T A C T G A C G T A C G T A C T G A G T C A C G T A C G T A C G T C G T A C G T A A C T G A C T G
A G T C C A G T C T A G A G C T G A C T C T A G G A T C A G C T C T G A C A G T C T A G T C A G G T A C C T G A

PB0083.1_Tcf7_1/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GTTGCTTTAAGG----
NNTTCCTTTGATCTNNA
A C G T A C T G A C G T A C G T A C T G A G T C A C G T A C G T A C G T C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T
C G A T C G A T C A G T A G C T A G T C A G T C G C A T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T T G C A