Information for 11-AATCCAAAGTAT (Motif 9)

C G T A C G T A A C G T A G T C A G T C C G T A C G T A C G T A A C T G A C G T C G T A A C G T
Reverse Opposite:
C G T A A C G T C G T A A G T C A C G T A C G T A C G T A C T G A C T G C G T A A C G T A C G T
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets177.0 +/- 0.0bp
Average Position of motif in Background122.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Dmrt1/MA1603.1/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AATCCAAAGTAT-
GATACAAAGTATC
C G T A C G T A A C G T A G T C A G T C C G T A C G T A C G T A A C T G A C G T C G T A A C G T A C G T
C T A G G C T A G C A T C G T A G A T C G C T A G C T A C G T A C T A G C G A T C G T A C G A T G T A C

FOXH1/MA0479.1/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AATCCAAAGTAT
TCCAATCCACA----
A C G T A C G T A C G T C G T A C G T A A C G T A G T C A G T C C G T A C G T A C G T A A C T G A C G T C G T A A C G T
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A A C G T A C G T A C G T A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AATCCAAAGTAT
SSAATCCACANN--
A C G T A C G T C G T A C G T A A C G T A G T C A G T C C G T A C G T A C G T A A C T G A C G T C G T A A C G T
A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C A C G T A C G T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:4
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AATCCAAAGTAT
AGAAACGAAAGT--
A C G T A C G T C G T A C G T A A C G T A G T C A G T C C G T A C G T A C G T A A C T G A C G T C G T A A C G T
T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T A C G T A C G T

POU5F1/MA1115.1/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AATCCAAAGTAT
ATATGCAAATT--
A C G T C G T A C G T A A C G T A G T C A G T C C G T A C G T A C G T A A C T G A C G T C G T A A C G T
C G T A G C A T T C G A G A C T C T A G A G T C G C T A C T G A G C T A G C A T C A G T A C G T A C G T

PITX1/MA0682.2/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AATCCAAAGTAT
CTAATCCC------
A C G T A C G T C G T A C G T A A C G T A G T C A G T C C G T A C G T A C G T A A C T G A C G T C G T A A C G T
G A T C A C G T C G T A C G T A A C G T G T A C A G T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T

OTX2/MA0712.2/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----AATCCAAAGTAT
NNCTAATCCCNN----
A C G T A C G T A C G T A C G T C G T A C G T A A C G T A G T C A G T C C G T A C G T A C G T A A C T G A C G T C G T A A C G T
G C A T G C A T G A T C G C A T C G T A G T C A C A G T G A T C G A T C G A T C G C A T C G A T A C G T A C G T A C G T A C G T

PITX2/MA1547.1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AATCCAAAGTAT
ATAATCCC------
A C G T A C G T C G T A C G T A A C G T A G T C A G T C C G T A C G T A C G T A A C T G A C G T C G T A A C G T
G T C A C G A T C T G A C G T A A C G T A G T C A G T C T G A C A C G T A C G T A C G T A C G T A C G T A C G T

PB0037.1_Isgf3g_1/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---AATCCAAAGTAT
CAAAATCGAAACTAA
A C G T A C G T A C G T C G T A C G T A A C G T A G T C A G T C C G T A C G T A C G T A A C T G A C G T C G T A A C G T
T G A C C T G A C T G A C G T A G C T A G C A T A G T C C T A G G T C A C G T A G C T A T A G C G A C T C G T A G C T A

HNF4G/MA0484.2/Jaspar

Match Rank:10
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AATCCAAAGTAT---
--TCCAAAGTCCAGA
C G T A C G T A A C G T A G T C A G T C C G T A C G T A C G T A A C T G A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C A G T A G T C G A T C T C G A T C G A C T G A A C T G C A G T G A T C G A T C C G T A T C A G C T G A