Information for 8-CTGTCTTGGTGA (Motif 9)

A G T C A C G T A C T G A C G T A G T C A C G T A C G T A C T G A C T G A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A A G T C A G T C C G T A C G T A A C T G C G T A A G T C C G T A A C T G
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets152.0 +/- 0.0bp
Average Position of motif in Background100.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CTGTCTTGGTGA
CTGTCTGG----
A G T C A C G T A C T G A C G T A G T C A C G T A C G T A C T G A C T G A C G T A C T G C G T A
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CTGTCTTGGTGA-
NNTNNTGTCTGGNNTNG
A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C G T A G T C A C G T A C G T A C T G A C T G A C G T A C T G C G T A A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad4/MA1153.1/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CTGTCTTGGTGA
-TGTCTAGA---
A G T C A C G T A C T G A C G T A G T C A C G T A C G T A C T G A C T G A C G T A C T G C G T A
A C G T G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A A C G T A C G T A C G T

PB0121.1_Foxj3_2/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CTGTCTTGGTGA-
NNCTTTGTTTTGNTNNN
A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C G T A G T C A C G T A C G T A C T G A C T G A C G T A C T G C G T A A C G T
G C A T A T G C G T A C C G A T G C A T C G A T C T A G C G A T C A G T C G A T A C G T C T A G C A T G G A C T T A C G G C A T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CTGTCTTGGTGA
VBSYGTCTGG----
A C G T A C G T A G T C A C G T A C T G A C G T A G T C A C G T A C G T A C T G A C T G A C G T A C T G C G T A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T

PB0158.1_Rfx3_2/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CTGTCTTGGTGA--------
ACTGACCCTTGGTTACCACAAAG
A C G T A C G T A C G T A G T C A C G T A C T G A C G T A G T C A C G T A C G T A C T G A C T G A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G T C A C G T A T C G G C T A A T G C T A C G A T G C G C A T C G A T T C A G A C T G C G A T C A G T C G T A G A T C T G A C T C G A T G A C T C G A T C G A C G T A A T C G

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CTGTCTTGGTGA
GCTGTG-------
A C G T A G T C A C G T A C T G A C G T A G T C A C G T A C G T A C T G A C T G A C G T A C T G C G T A
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CTGTCTTGGTGA
NTGTCAN-----
A G T C A C G T A C T G A C G T A G T C A C G T A C G T A C T G A C T G A C G T A C T G C G T A
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T

SOX10/MA0442.2/Jaspar

Match Rank:9
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CTGTCTTGGTGA-
--NNCTTTGTTNN
A G T C A C G T A C T G A C G T A G T C A C G T A C G T A C T G A C T G A C G T A C T G C G T A A C G T
A C G T A C G T A C G T A G C T T G A C C G A T C G A T C G A T T C A G C G A T A C G T G A C T G A C T

MEIS3/MA0775.1/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCTTGGTGA
CCTGTCAA-----
A C G T A G T C A C G T A C T G A C G T A G T C A C G T A C G T A C T G A C T G A C G T A C T G C G T A
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T A C G T