Information for 19-GTATAAAACTCT (Motif 16)

A C T G A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C G T A G T C A C G T
Reverse Opposite:
C G T A A C T G C G T A A C T G A C G T A C G T A C G T A C G T C G T A A C G T C G T A A G T C
p-value:1e-4
log p-value:-1.027e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets178.0 +/- 0.0bp
Average Position of motif in Background151.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL012.1_TATA-Box/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GTATAAAACTCT---
GTATAAAAGGCGGGG
A C T G A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C G T A G T C A C G T A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GTATAAAACTCT---
GTATAAAAGGCGGGG
A C T G A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C G T A G T C A C G T A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

PH0078.1_Hoxd13/Jaspar

Match Rank:3
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GTATAAAACTCT
CTACCAATAAAATTCT
A C G T A C G T A C G T A C G T A C T G A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C G T A G T C A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GTATAAAACTCT
CYHATAAAAN---
A C G T A C T G A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C G T A G T C A C G T
T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C A C G T A C G T A C G T

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GTATAAAACTCT
NCYAATAAAA----
A C G T A C G T A C T G A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C G T A G T C A C G T
C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GTATAAAACTCT
NGYCATAAAWCH--
A C G T A C G T A C T G A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C G T A G T C A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T

MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:7
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GTATAAAACTCT
TTCAAAWTAAAAGTC-
A C G T A C G T A C G T A C G T A C T G A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C G T A G T C A C G T
C A G T G A C T A G T C G C T A C T G A G T C A C G T A A G C T G T C A C T G A C T G A C T G A A C T G A G C T G A T C A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:8
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GTATAAAACTCT
--ATTAAA----
A C T G A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C G T A G T C A C G T
A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:9
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GTATAAAACTCT
AGAGCCATAAAATTCG
A C G T A C G T A C G T A C G T A C T G A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C G T A G T C A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GTATAAAACTCT
CCYMATAAAA----
A C G T A C G T A C T G A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C G T A G T C A C G T
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T