Information for 6-GAGCAACCTA (Motif 26)

A C T G C G T A A C T G A G T C C G T A C G T A A G T C A G T C A C G T C G T A
Reverse Opposite:
A C G T C G T A A C T G A C T G A C G T A C G T A C T G A G T C A C G T A G T C
p-value:1e-3
log p-value:-8.034e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif11.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets76.0 +/- 0.0bp
Average Position of motif in Background108.4 +/- 41.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RFX7/MA1554.1/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GAGCAACCTA
NTAGCAACG--
A C G T A C T G C G T A A C T G A G T C C G T A C G T A A G T C A G T C A C G T C G T A
C T G A G A C T T C G A T A C G G A T C C T G A C T G A A T G C T A C G A C G T A C G T

PB0161.1_Rxra_2/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GAGCAACCTA-----
NNNNCAACCTTCGNGA
A C G T A C T G C G T A A C T G A G T C C G T A C G T A A G T C A G T C A C G T C G T A A C G T A C G T A C G T A C G T A C G T
G T C A C A T G G C A T C T G A A G T C T C G A T G C A T G A C G A T C C G A T C G A T A G T C C A T G A G T C A C T G G T C A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----GAGCAACCTA
CCGCATAGCAACGGA
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A G T C C G T A C G T A A G T C A G T C A C G T C G T A
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GAGCAACCTA
TACCATAGCAACGGT
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A G T C C G T A C G T A A G T C A G T C A C G T C G T A
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0054.1_Rfx3_1/Jaspar

Match Rank:5
Score:0.60
Offset:-9
Orientation:forward strand
Alignment:---------GAGCAACCTA----
TGTGACCCTTAGCAACCGATTAA
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A G T C C G T A C G T A A G T C A G T C A C G T C G T A A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

PB0181.1_Spdef_2/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GAGCAACCTA----
GATAACATCCTAGTAG
A C G T A C G T A C T G C G T A A C T G A G T C C G T A C G T A A G T C A G T C A C G T C G T A A C G T A C G T A C G T A C G T
C T A G C G T A A C G T G C T A C T G A A G T C C G T A C G A T G A T C A G T C A G C T G C T A A C T G G C A T C G T A T C A G

RFX1/MA0509.2/Jaspar

Match Rank:7
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----GAGCAACCTA
TNCCATAGCAACNN-
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A G T C C G T A C G T A A G T C A G T C A C G T C G T A
G A C T C A T G A G T C G A T C G T C A G A C T T C G A C T A G G A T C C T G A T C G A G A T C G T C A T C A G A C G T

PB0154.1_Osr1_2/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GAGCAACCTA----
ACATGCTACCTAATAC
A C G T A C G T A C T G C G T A A C T G A G T C C G T A C G T A A G T C A G T C A C G T C G T A A C G T A C G T A C G T A C G T
C T G A G A T C G C T A G A C T T C A G G A T C A G C T C G T A G T A C G A T C G C A T T C G A G T C A C G A T G T C A T G A C

PB0155.1_Osr2_2/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GAGCAACCTA----
ACTTGCTACCTACACC
A C G T A C G T A C T G C G T A A C T G A G T C C G T A C G T A A G T C A G T C A C G T C G T A A C G T A C G T A C G T A C G T
C T G A G A T C G A C T G A C T T A C G A G T C G A C T G C T A G T A C G A T C G C A T T C G A G T A C C G T A A G C T T G A C

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GAGCAACCTA
SCCTAGCAACAG-
A C G T A C G T A C G T A C T G C G T A A C T G A G T C C G T A C G T A A G T C A G T C A C G T C G T A
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T