Information for 5-GTTAGGAACAAT (Motif 6)

A C T G A C G T A C G T C G T A A C T G A C T G C G T A C G T A A G T C C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T A C T G A C G T A C G T A G T C A G T C A C G T C G T A C G T A A G T C
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.0 +/- 0.0bp
Average Position of motif in Background20.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0063.1_Sox13_1/Jaspar

Match Rank:1
Score:0.77
Offset:1
Orientation:forward strand
Alignment:GTTAGGAACAAT-----
-TTAAGAACAATAAATT
A C T G A C G T A C G T C G T A A C T G A C T G C G T A C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T

PB0072.1_Sox5_1/Jaspar

Match Rank:2
Score:0.76
Offset:1
Orientation:forward strand
Alignment:GTTAGGAACAAT-----
-TTTAGAACAATAAAAT
A C T G A C G T A C G T C G T A A C T G A C T G C G T A C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T

PB0062.1_Sox12_1/Jaspar

Match Rank:3
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GTTAGGAACAAT--
NTTNAGAACAATTA
A C T G A C G T A C G T C G T A A C T G A C T G C G T A C G T A A G T C C G T A C G T A A C G T A C G T A C G T
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A

PB0074.1_Sox8_1/Jaspar

Match Rank:4
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:GTTAGGAACAAT------
-TNNAGAACAATANATNN
A C T G A C G T A C G T C G T A A C T G A C T G C G T A C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C

PB0173.1_Sox21_2/Jaspar

Match Rank:5
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GTTAGGAACAAT-----
NNNNNGAACAATTGANN
A C T G A C G T A C G T C G T A A C T G A C T G C G T A C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

SOX8/MA0868.2/Jaspar

Match Rank:6
Score:0.70
Offset:4
Orientation:forward strand
Alignment:GTTAGGAACAAT--
----AGAACAATGG
A C T G A C G T A C G T C G T A A C T G A C T G C G T A C G T A A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A C T A G C T G A C G T A A G T C C G T A G T C A G C A T C T A G T A C G

PB0065.1_Sox15_1/Jaspar

Match Rank:7
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GTTAGGAACAAT------
-TAGTGAACAATAGATTT
A C T G A C G T A C G T C G T A A C T G A C T G C G T A C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:8
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GTTAGGAACAAT------
--AATGAACAATGGAATT
A C T G A C G T A C G T C G T A A C T G A C T G C G T A C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

PB0067.1_Sox18_1/Jaspar

Match Rank:9
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GTTAGGAACAAT----
NNTNANAACAATTNNA
A C T G A C G T A C G T C G T A A C T G A C T G C G T A C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A

PB0073.1_Sox7_1/Jaspar

Match Rank:10
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GTTAGGAACAAT---------
AATAAAGAACAATAGAATTTCA
A C G T A C T G A C G T A C G T C G T A A C T G A C T G C G T A C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T C A G C T A A C G T C T G A G C T A C G T A C T A G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C T A G A C T G C A T G C A T A G T C G C T A