Information for 12-TCAGCTCTGCCC (Motif 13)

A C G T A G T C C G T A A C T G A G T C A C G T A G T C A C G T A C T G A G T C A G T C A G T C
Reverse Opposite:
A C T G A C T G A C T G A G T C C G T A A C T G C G T A A C T G A G T C A C G T A C T G C G T A
p-value:1e-3
log p-value:-8.111e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif28.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets157.0 +/- 0.0bp
Average Position of motif in Background86.6 +/- 75.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TCAGCTCTGCCC--
TGACCTTTGCCCTA
A C G T A G T C C G T A A C T G A G T C A C G T A G T C A C G T A C T G A G T C A G T C A G T C A C G T A C G T
A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

POL003.1_GC-box/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TCAGCTCTGCCC---
-NAGCCCCGCCCCCN
A C G T A G T C C G T A A C T G A G T C A C G T A G T C A C G T A C T G A G T C A G T C A G T C A C G T A C G T A C G T
A C G T G T A C T C G A T C A G G T A C G A T C T G A C G A T C C A T G A G T C A G T C A G T C G T A C G A T C G C A T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TCAGCTCTGCCC---
TGACCTTTGCCCTAN
A C G T A G T C C G T A A C T G A G T C A C G T A G T C A C G T A C T G A G T C A G T C A G T C A C G T A C G T A C G T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:4
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:TCAGCTCTGCCC---
---GCTCCGCCCMCY
A C G T A G T C C G T A A C T G A G T C A C G T A G T C A C G T A C T G A G T C A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C T A G A G T C G A C T G T A C A T G C C T A G A G T C A G T C A G T C G T C A A G T C G A C T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TCAGCTCTGCCC--
TGACCTTTGCCCCA
A C G T A G T C C G T A A C T G A G T C A C G T A G T C A C G T A C T G A G T C A G T C A G T C A C G T A C G T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A

PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TCAGCTCTGCCC---
TGACCTTTGMCCTNB
A C G T A G T C C G T A A C T G A G T C A C G T A G T C A C G T A C T G A G T C A G T C A G T C A C G T A C G T A C G T
G C A T T C A G T G C A G T A C G A T C A G C T A G C T A C G T T A C G T G C A G A T C G A T C G A C T G C T A A C T G

NR2C2/MA0504.1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TCAGCTCTGCCC---
TGACCTCTGACCCCN
A C G T A G T C C G T A A C T G A G T C A C G T A G T C A C G T A C T G A G T C A G T C A G T C A C G T A C G T A C G T
G A C T T C A G T G C A G T A C A G T C A G C T A G T C G A C T T A C G G T C A G T A C T G A C A G T C A G T C A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TCAGCTCTGCCC--
TGACCTTTGACCTC
A C G T A G T C C G T A A C T G A G T C A C G T A G T C A C G T A C T G A G T C A G T C A G T C A C G T A C G T
G A C T T A C G T G C A G T A C G A T C A G C T G A C T G A C T T A C G T G C A G T A C G A T C G A C T A G T C

THAP1/MA0597.1/Jaspar

Match Rank:9
Score:0.62
Offset:6
Orientation:forward strand
Alignment:TCAGCTCTGCCC---
------CTGCCCGCA
A C G T A G T C C G T A A C T G A G T C A C G T A G T C A C G T A C T G A G T C A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TCAGCTCTGCCC
-CGGCTGTTCC-
A C G T A G T C C G T A A C T G A G T C A C G T A G T C A C G T A C T G A G T C A G T C A G T C
A C G T G A T C T C A G T A C G T A G C G C A T T A C G C A G T A C G T T G A C G A T C A C G T