Information for 13-ATGCATATAGTT (Motif 13)

C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C G T C G T A A C T G A C G T A C G T
Reverse Opposite:
C G T A C G T A A G T C A C G T C G T A A C G T C G T A A C G T A C T G A G T C C G T A A C G T
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets193.0 +/- 0.0bp
Average Position of motif in Background55.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:ATGCATATAGTT
ATGMATATDC--
C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C G T C G T A A C T G A C G T A C G T
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-ATGCATATAGTT--
YATGCATATRCATRT
A C G T C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C G T C G T A A C T G A C G T A C G T A C G T A C G T
G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T

POU5F1/MA1115.1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ATGCATATAGTT
ATATGCAAATT---
A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C G T C G T A A C T G A C G T A C G T
C G T A G C A T T C G A G A C T C T A G A G T C G C T A C T G A G C T A G C A T C A G T A C G T A C G T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:4
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----ATGCATATAGTT
AAAATATGCATAATAAA
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C G T C G T A A C T G A C G T A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:ATGCATATAGTT
ATGAATATTC--
C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C G T C G T A A C T G A C G T A C G T
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T

POU2F3/MA0627.2/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---ATGCATATAGTT
AATATGCAAATAA--
A C G T A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C G T C G T A A C T G A C G T A C G T
G C T A C G T A G C A T C G T A C A G T C A T G A G T C C G T A C G T A C G T A C G A T C G T A G C T A A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--ATGCATATAGTT
TTATGCAAAT----
A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C G T C G T A A C T G A C G T A C G T
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--ATGCATATAGTT
ATATGCAAATNNN-
A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C G T C G T A A C T G A C G T A C G T
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--ATGCATATAGTT
ATATGCAAAT----
A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C G T C G T A A C T G A C G T A C G T
G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T

Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-ATGCATATAGTT
TATGCAAATC---
A C G T C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C G T C G T A A C T G A C G T A C G T
G A C T C G T A C A G T A C T G A G T C C G T A C G T A C G T A C A G T T G A C A C G T A C G T A C G T