Information for 14-CTGAGTGCCATA (Motif 14)

A G T C A C G T A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C G T C G T A
Reverse Opposite:
A C G T C G T A A C G T A C T G A C T G A G T C C G T A A G T C A C G T A G T C C G T A A C T G
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets195.0 +/- 0.0bp
Average Position of motif in Background28.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PKNOX1/MA0782.2/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CTGAGTGCCATA--
TTTGAGTGACAGCTA
A C G T A G T C A C G T A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C G T C G T A A C G T A C G T
C G A T G C A T C G A T T C A G C T G A A C T G C G A T A T C G C T G A G A T C C G T A A C T G T A G C A G C T C T G A

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CTGAGTGCCATA
CTTGAGTGGCT--
A C G T A G T C A C G T A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C G T C G T A
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CTGAGTGCCATA
BTGABTGACAGS
A G T C A C G T A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C G T C G T A
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

PBX3/MA1114.1/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CTGAGTGCCATA---
GGGTGAGTGACAGGCGG
A C G T A C G T A G T C A C G T A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C G T C G T A A C G T A C G T A C G T
T A C G A C T G A C T G C G A T T C A G C G T A A C T G C A G T T A C G C T G A T A G C C T G A A C T G T A C G A T G C T C A G A T C G

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTGAGTGCCATA
NTGATTGACAGN
A G T C A C G T A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C G T C G T A
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

NKX2-5/MA0063.2/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CTGAGTGCCATA
NNTTGAGTGNN---
A C G T A C G T A G T C A C G T A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C G T C G T A
C G A T A G C T C G A T G C A T C T A G C G T A C T A G G A C T C T A G A C T G A G C T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTGAGTGCCATA
TTRAGTGSYK--
A G T C A C G T A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C G T C G T A
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CTGAGTGCCATA
TTGAGTGSTT--
A G T C A C G T A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C G T C G T A
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T

MSANTD3/MA1523.1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CTGAGTGCCATA
GTGAGTGNAC--
A G T C A C G T A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C G T C G T A
C A T G C A G T C T A G C G T A C T A G G C A T C T A G A C G T T G C A T A G C A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTGAGTGCCATA
TTAAGTGCTT--
A G T C A C G T A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A A C G T C G T A
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T