Information for 19-GAAGTTTATAAG (Motif 20)

A C T G C G T A C G T A A C T G A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T C G T A A C G T C G T A C G T A C G T A A G T C A C G T A C G T A G T C
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets81.0 +/- 0.0bp
Average Position of motif in Background39.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:1
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GAAGTTTATAAG-
---TTTTATKRGG
A C T G C G T A C G T A A C T G A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C T G A C G T
A C G T A C G T A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:2
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GAAGTTTATAAG
--NTTTTATDRG
A C T G C G T A C G T A A C T G A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C T G
A C G T A C G T C T A G G C A T A C G T G C A T G A C T C G T A G A C T C A T G C T A G A T C G

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GAAGTTTATAAG-
---TTTTATTRGN
A C T G C G T A C G T A A C T G A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C T G A C G T
A C G T A C G T A C G T C G A T A C G T A C G T G C A T C G T A G A C T C A G T C T A G A T C G G A T C

PH0068.1_Hoxc13/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GAAGTTTATAAG----
NAATTTTACGAGNTNN
A C T G C G T A C G T A A C T G A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

PH0078.1_Hoxd13/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GAAGTTTATAAG---
NNANTTTTATTGGNNN
A C G T A C T G C G T A C G T A A C T G A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C T G A C G T A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

PH0057.1_Hoxb13/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GAAGTTTATAAG---
NNAATTTTATTGGNTN
A C G T A C T G C G T A C G T A A C T G A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C T G A C G T A C G T A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

Foxq1/MA0040.1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GAAGTTTATAAG
TATTGTTTATT--
A C G T A C T G C G T A C G T A A C T G A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C T G
G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T A C G T A C G T

NR1I3/MA1534.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GAAGTTTATAAG
AAAGTTCAT---
A C T G C G T A C G T A A C T G A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C T G
C G T A C T G A C T G A A C T G A C G T C A G T A G T C C T G A G A C T A C G T A C G T A C G T

PB0161.1_Rxra_2/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GAAGTTTATAAG
TCGCGAAGGTTGTACT
A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C T G A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C T G
C A G T T G A C T C A G G T A C T C A G G C T A G C T A C T A G A C T G A C G T A G C T T C A G A G C T C G T A G T A C C A G T

PB0174.1_Sox30_2/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GAAGTTTATAAG----
TAAGATTATAATACGG
A C T G C G T A C G T A A C T G A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T
G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G