Information for 2-CTGGATTCACAA (Motif 3)

A G T C A C G T A C T G A C T G C G T A A C G T A C G T A G T C C G T A A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G A C G T A C T G C G T A C G T A A C G T A G T C A G T C C G T A A C T G
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets21.0 +/- 0.0bp
Average Position of motif in Background166.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0137.1_Pitx1/Jaspar

Match Rank:1
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CTGGATTCACAA-
TTAGAGGGATTAACAAT
A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C T G C G T A A C G T A C G T A G T C C G T A A G T C C G T A C G T A A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

PB0171.1_Sox18_2/Jaspar

Match Rank:2
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CTGGATTCACAA-
GGACTGAATTCATGCC
A C G T A C G T A C G T A G T C A C G T A C T G A C T G C G T A A C G T A C G T A G T C C G T A A G T C C G T A C G T A A C G T
C T A G A C T G C T G A A T G C A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A C G A T C T A G G T A C T G A C

FOXH1/MA0479.1/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTGGATTCACAA
TCCAATCCACA-
A G T C A C G T A C T G A C T G C G T A A C G T A C G T A G T C C G T A A G T C C G T A C G T A
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:4
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CTGGATTCACAA
GGTCTGGCAT-----
A C G T A C G T A C G T A G T C A C G T A C T G A C T G C G T A A C G T A C G T A G T C C G T A A G T C C G T A C G T A
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T A C G T

PH0123.1_Obox3/Jaspar

Match Rank:5
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CTGGATTCACAA-
TGAGGGGGATTAACTAT
A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C T G C G T A A C G T A C G T A G T C C G T A A G T C C G T A C G T A A C G T
G C A T A T C G T C G A T A C G C T A G C T A G C T A G C A T G G C T A A C G T G A C T C G T A C G T A G T A C C G A T G T C A G A C T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CTGGATTCACAA
-TGGTTTCAGT-
A G T C A C G T A C T G A C T G C G T A A C G T A C G T A G T C C G T A A G T C C G T A C G T A
A C G T G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CTGGATTCACAA
NNTGTGGATTSS---
A C G T A C G T A C G T A G T C A C G T A C T G A C T G C G T A A C G T A C G T A G T C C G T A A G T C C G T A C G T A
C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CTGGATTCACAA
---NATTCAAAT
A G T C A C G T A C T G A C T G C G T A A C G T A C G T A G T C C G T A A G T C C G T A C G T A
A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CTGGATTCACAA
VRGGATTARN--
A G T C A C G T A C T G A C T G C G T A A C G T A C G T A G T C C G T A A G T C C G T A C G T A
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CTGGATTCACAA
-CGGTTTCAAA-
A G T C A C G T A C T G A C T G C G T A A C G T A C G T A G T C C G T A A G T C C G T A C G T A
A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T