Information for 3-AGCTTCATTG (Motif 14)

C G T A A C T G A G T C A C G T A C G T A G T C C G T A A C G T A C G T A C T G
Reverse Opposite:
A G T C C G T A C G T A A C G T A C T G C G T A C G T A A C T G A G T C A C G T
p-value:1e-3
log p-value:-8.420e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif10.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets192.0 +/- 0.0bp
Average Position of motif in Background83.4 +/- 66.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:1
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:AGCTTCATTG--
--TTTCATTRCC
C G T A A C T G A G T C A C G T A C G T A G T C C G T A A C G T A C G T A C T G A C G T A C G T
A C G T A C G T G A C T A G C T G A C T A T G C G C T A A C G T A C G T C T G A A T G C G A T C

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:2
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:AGCTTCATTG--
--TTTNATTGCY
C G T A A C T G A G T C A C G T A C G T A G T C C G T A A C G T A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A C G T G T C A A C G T C A G T C T A G A T G C G A T C

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:AGCTTCATTG--
--TTTCATKGCC
C G T A A C T G A G T C A C G T A C G T A G T C C G T A A C G T A C G T A C T G A C G T A C G T
A C G T A C G T G C A T A C G T C G A T A G T C G T C A A G C T C A G T C T A G A T G C G A T C

PB0005.1_Bbx_1/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AGCTTCATTG-----
NANTTCATTGAATTA
C G T A A C T G A G T C A C G T A C G T A G T C C G T A A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T
G A T C C G T A T A G C C G A T C G A T T G A C G C T A G C A T C G A T A C T G C G T A G C T A G A C T C G A T C G T A

POL008.1_DCE_S_I/Jaspar

Match Rank:5
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AGCTTCATTG
-GCTTCC---
C G T A A C T G A G T C A C G T A C G T A G T C C G T A A C G T A C G T A C T G
A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AGCTTCATTG---
-NTTTCATTRCHD
C G T A A C T G A G T C A C G T A C G T A G T C C G T A A C G T A C G T A C T G A C G T A C G T A C G T
A C G T C G A T G C A T A C G T C G A T A G T C C G T A A C G T A C G T C T A G A G T C G A C T C A G T

HOXD13/MA0909.2/Jaspar

Match Rank:7
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AGCTTCATTG--
-GTTTTATTGGG
C G T A A C T G A G T C A C G T A C G T A G T C C G T A A C G T A C G T A C T G A C G T A C G T
A C G T A C T G A C G T A C G T A G C T A C G T C G T A A G C T A C G T A C T G A T C G A T C G

Nr2e3/MA0164.1/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGCTTCATTG
CAAGCTT-----
A C G T A C G T C G T A A C T G A G T C A C G T A C G T A G T C C G T A A C G T A C G T A C T G
G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:9
Score:0.63
Offset:3
Orientation:forward strand
Alignment:AGCTTCATTG--
---CTCATTGTC
C G T A A C T G A G T C A C G T A C G T A G T C C G T A A C G T A C G T A C T G A C G T A C G T
A C G T A C G T A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C

Dux/MA0611.1/Jaspar

Match Rank:10
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:AGCTTCATTG-
---TTGATTGN
C G T A A C T G A G T C A C G T A C G T A G T C C G T A A C G T A C G T A C T G A C G T
A C G T A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G