Information for 1-GCGCGTAA (Motif 21)

A C T G A G T C A C T G A G T C A C T G A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A A G T C A C T G A G T C A C T G A G T C
p-value:1e-4
log p-value:-1.027e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets110.0 +/- 0.0bp
Average Position of motif in Background172.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TCFL5/MA0632.2/Jaspar

Match Rank:1
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--GCGCGTAA
GTGCGCGTGA
A C G T A C G T A C T G A G T C A C T G A G T C A C T G A C G T C G T A C G T A
C A T G C A G T A T C G A G T C C T A G A G T C C T A G G A C T A C T G T G C A

E2F(E2F)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---GCGCGTAA-
TTCGCGCGAAAA
A C G T A C G T A C G T A C T G A G T C A C T G A G T C A C T G A C G T C G T A C G T A A C G T
A G C T A G C T T A G C A T C G A G T C A C T G A T G C A T C G T C G A C T G A T C G A C T G A

E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GCGCGTAA-
GGCGGGAAAH
A C G T A C T G A G T C A C T G A G T C A C T G A C G T C G T A C G T A A C G T
T A C G T A C G G T A C A T C G T A C G T A C G G T C A C T G A C G T A G A C T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:4
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GCGCGTAA
BGCACGTA-
A C G T A C T G A G T C A C T G A G T C A C T G A C G T C G T A C G T A
A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T

PB0143.1_Klf7_2/Jaspar

Match Rank:5
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----GCGCGTAA----
NNNTNGGGCGTATNNTN
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C T G A G T C A C T G A C G T C G T A C G T A A C G T A C G T A C G T A C G T
G T C A C G T A A C T G G C A T C A G T C T A G A C T G A C T G G A T C C T A G A C G T G C T A G C A T T C A G G A T C A G C T A C G T

HOXC13/MA0907.1/Jaspar

Match Rank:6
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCGCGTAA---
GCTCGTAAAAA
A C T G A G T C A C T G A G T C A C T G A C G T C G T A C G T A A C G T A C G T A C G T
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:7
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GCGCGTAA--
TGGCGGGAAAHB
A C G T A C G T A C T G A G T C A C T G A G T C A C T G A C G T C G T A C G T A A C G T A C G T
C G A T T A C G A T C G G T A C A C T G A T C G A C T G C T G A C T G A T G C A G C T A A T C G

PH0048.1_Hoxa13/Jaspar

Match Rank:8
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GCGCGTAA-----
AAACCTCGTAAAATTT
A C G T A C G T A C G T A C T G A G T C A C T G A G T C A C T G A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

HIF1A/MA1106.1/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GCGCGTAA
NNGCACGTNC
A C G T A C G T A C T G A G T C A C T G A G T C A C T G A C G T C G T A C G T A
T A C G T A C G C A T G A G T C T C G A A G T C C T A G G A C T T C G A A T G C

E2F2/MA0864.2/Jaspar

Match Rank:10
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------GCGCGTAA--
NNAATGGCGCCAAAAC
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C T G A G T C A C T G A C G T C G T A C G T A A C G T A C G T
T C A G C G T A G C T A C G T A C A G T A T C G A T C G G A T C A C T G A T G C A T G C G C T A G C T A G C T A G C T A A G T C