Information for 1-AAGGCTCACATA (Motif 1)

C G T A C G T A A C T G A C T G A G T C A C G T A G T C C G T A A G T C C G T A A C G T C G T A
Reverse Opposite:
A C G T C G T A A C G T A C T G A C G T A C T G C G T A A C T G A G T C A G T C A C G T A C G T
p-value:1e-5
log p-value:-1.265e+01
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif66.67%
Number of Background Sequences with motif86.4
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets33.5 +/- 1.5bp
Average Position of motif in Background106.8 +/- 65.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AAGGCTCACATA---
CGAAGCACACAAAATA
A C G T C G T A C G T A A C T G A C T G A G T C A C G T A G T C C G T A A G T C C G T A A C G T C G T A A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PB0053.1_Rara_1/Jaspar

Match Rank:2
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----AAGGCTCACATA
TCTCAAAGGTCACCTG
A C G T A C G T A C G T A C G T C G T A C G T A A C T G A C T G A G T C A C G T A G T C C G T A A G T C C G T A A C G T C G T A
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

PB0049.1_Nr2f2_1/Jaspar

Match Rank:3
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----AAGGCTCACATA
TCTCAAAGGTCACGAG
A C G T A C G T A C G T A C G T C G T A C G T A A C T G A C T G A G T C A C G T A G T C C G T A A G T C C G T A A C G T C G T A
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

RHOXF1/MA0719.1/Jaspar

Match Rank:4
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AAGGCTCACATA
-NGGATTAN---
C G T A C G T A A C T G A C T G A G T C A C G T A G T C C G T A A G T C C G T A A C G T C G T A
A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T A C G T A C G T A C G T

MAFF/MA0495.3/Jaspar

Match Rank:5
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----AAGGCTCACATA
NNNAAAATGCTGACTN-
A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A C T G A G T C A C G T A G T C C G T A A G T C C G T A A C G T C G T A
C G T A C G T A C G T A C G T A C G T A C G T A G C T A G C A T T C A G G T A C G C A T C A T G G C T A A T G C G C A T G A C T A C G T

MXI1/MA1108.2/Jaspar

Match Rank:6
Score:0.53
Offset:4
Orientation:forward strand
Alignment:AAGGCTCACATA--
----GACACATGGC
C G T A C G T A A C T G A C T G A G T C A C G T A G T C C G T A A G T C C G T A A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T C G A G A T C C T G A A G T C C T G A A G C T C T A G A C T G A T G C

NR4A1/MA1112.2/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AAGGCTCACATA
TTAAAGGTCAAA--
A C G T A C G T C G T A C G T A A C T G A C T G A G T C A C G T A G T C C G T A A G T C C G T A A C G T C G T A
C A G T G C A T C T G A C T G A T C G A C A T G C A T G A C G T A G T C C T G A T C G A C T G A A C G T A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AAGGCTCACATA---
TACATGTGCACATAAAA
A C G T A C G T C G T A C G T A A C T G A C T G A G T C A C G T A G T C C G T A A G T C C G T A A C G T C G T A A C G T A C G T A C G T
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:AAGGCTCACATA
--NGCTN-----
C G T A C G T A A C T G A C T G A G T C A C G T A G T C C G T A A G T C C G T A A C G T C G T A
A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T

USF2/MA0526.3/Jaspar

Match Rank:10
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:AAGGCTCACATA----
--NNGTCACATGACNN
C G T A C G T A A C T G A C T G A G T C A C G T A G T C C G T A A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C T A G T C A G A G C T T A G C G T C A A G T C T C G A C A G T T A C G T C G A A G T C G A T C G T C A