Information for 4-AAGAGAACATTG (Motif 5)

C G T A C G T A A C T G C G T A A C T G C G T A C G T A A G T C C G T A A C G T A C G T A C T G
Reverse Opposite:
A G T C C G T A C G T A A C G T A C T G A C G T A C G T A G T C A C G T A G T C A C G T A C G T
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.0 +/- 0.0bp
Average Position of motif in Background126.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX8/MA0868.2/Jaspar

Match Rank:1
Score:0.62
Offset:3
Orientation:forward strand
Alignment:AAGAGAACATTG-
---AGAACAATGG
C G T A C G T A A C T G C G T A A C T G C G T A C G T A A G T C C G T A A C G T A C G T A C T G A C G T
A C G T A C G T A C G T T G C A C T A G C T G A C G T A A G T C C G T A G T C A G C A T C T A G T A C G

Foxd3/MA0041.1/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AAGAGAACATTG
AAACAAACATTC
C G T A C G T A A C T G C G T A A C T G C G T A C G T A A G T C C G T A A C G T A C G T A C T G
C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C

PB0062.1_Sox12_1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AAGAGAACATTG-
NTTNAGAACAATTA
A C G T C G T A C G T A A C T G C G T A A C T G C G T A C G T A A G T C C G T A A C G T A C G T A C T G A C G T
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A

SOX14/MA1562.1/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AAGAGAACATTG
--CCGAACAATG
C G T A C G T A A C T G C G T A A C T G C G T A C G T A A G T C C G T A A C G T A C G T A C T G
A C G T A C G T T G A C G A T C C A T G C G T A G C T A A G T C C G T A G T C A A C G T C A T G

Sox6/MA0515.1/Jaspar

Match Rank:5
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:AAGAGAACATTG-
---AAAACAATGG
C G T A C G T A A C T G C G T A A C T G C G T A C G T A A G T C C G T A A C G T A C G T A C T G A C G T
A C G T A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:AAGAGAACATTG-
---VRAACAATGG
C G T A C G T A A C T G C G T A A C T G C G T A C G T A A G T C C G T A A C G T A C G T A C T G A C G T
A C G T A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:AAGAGAACATTG--
----GAACAATGGN
C G T A C G T A A C T G C G T A A C T G C G T A C G T A A G T C C G T A A C G T A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

PB0072.1_Sox5_1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AAGAGAACATTG----
TTTAGAACAATAAAAT
C G T A C G T A A C T G C G T A A C T G C G T A C G T A A G T C C G T A A C G T A C G T A C T G A C G T A C G T A C G T A C G T
C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T

Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AAGAGAACATTG-
-VVRRAACAATGG
C G T A C G T A A C T G C G T A A C T G C G T A C G T A A G T C C G T A A C G T A C G T A C T G A C G T
A C G T T G A C T A G C T C A G T C G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T A C G

PB0070.1_Sox30_1/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AAGAGAACATTG-----
-AATGAACAATGGAATT
C G T A C G T A A C T G C G T A A C T G C G T A C G T A A G T C C G T A A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T