Information for 12-GGTCAGGCTTAG (Motif 12)

A C T G A C T G A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A C G T A A C T G A G T C A G T C A C G T A C T G C G T A A G T C A G T C
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets6.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5/MA0014.3/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--GGTCAGGCTTAG
NNGGTCACGCTC--
A C G T A C G T A C T G A C T G A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C T G
T C A G C A T G T C A G A T C G G A C T A T G C C G T A A G T C T C A G A T G C G A C T A G T C A C G T A C G T

ZNF449/MA1656.1/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GGTCAGGCTTAG
NNGGTTGGGCTTNN
A C G T A C G T A C T G A C T G A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C T G
A T G C C A G T C A T G A C T G G A C T C G A T C A T G A C T G A T C G A G T C C G A T A C G T A C T G C A T G

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:3
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:GGTCAGGCTTAG-
-----GGATTAGC
A C T G A C T G A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GGTCAGGCTTAG
AGGTCA-------
A C G T A C T G A C T G A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C T G
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NR2C1/MA1535.1/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GGTCAGGCTTAG
CGAGGTCAC------
A C G T A C G T A C G T A C T G A C T G A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C T G
G T A C C T A G T C G A A C T G A C T G A C G T A T G C C T G A G A T C A C G T A C G T A C G T A C G T A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GGTCAGGCTTAG
---NGGGATTA-
A C T G A C T G A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C T G
A C G T A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:7
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GGTCAGGCTTAG
AGRGGTCA-------
A C G T A C G T A C G T A C T G A C T G A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C T G
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer

Match Rank:8
Score:0.60
Offset:-7
Orientation:forward strand
Alignment:-------GGTCAGGCTTAG
NRBCARRGGTCA-------
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C T G
T C A G T C A G A C G T G T A C G C T A T C A G C T G A A C T G A C T G A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GGTCAGGCTTAG
----AGGCCTNG
A C T G A C T G A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C T G
A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GGTCAGGCTTAG-----
RGGTCADNNAGAGGTCAV
A C G T A C T G A C T G A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C