Information for 4-ACTGCAGGATAA (Motif 7)

C T G A A G T C A C G T A C T G A G T C C G T A A C T G A C T G C G T A A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T G T C A A C G T A G T C A G T C A C G T C T A G A G T C C G T A A C T G A G C T
p-value:1e-8
log p-value:-1.898e+01
Information Content per bp:1.919
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif6.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets102.7 +/- 46.2bp
Average Position of motif in Background96.6 +/- 71.2bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----ACTGCAGGATAA
GAGCACAGCAGGACA-
A C G T A C G T A C G T A C G T C T G A A G T C A C G T A C T G A G T C C G T A A C T G A C T G C G T A A C G T C G T A C G T A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----ACTGCAGGATAA
CCACACAGCAGGAGA-
A C G T A C G T A C G T A C G T C T G A A G T C A C G T A C T G A G T C C G T A A C T G A C T G C G T A A C G T C G T A C G T A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-ACTGCAGGATAA
CACAGCAGGGG--
A C G T C T G A A G T C A C G T A C T G A G T C C G T A A C T G A C T G C G T A A C G T C G T A C G T A
T A G C T C G A A G T C T G C A T A C G A G T C T C G A A T C G A C T G T A C G T C A G A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-ACTGCAGGATAA
CACAGCAGGGGG-
A C G T C T G A A G T C A C G T A C T G A G T C C G T A A C T G A C T G C G T A A C G T C G T A C G T A
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----ACTGCAGGATAA
CCACACAGCAGGAGA-
A C G T A C G T A C G T A C G T C T G A A G T C A C G T A C T G A G T C C G T A A C T G A C T G C G T A A C G T C G T A C G T A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

Zic2/MA1629.1/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---ACTGCAGGATAA
CTCACAGCAGGGGG-
A C G T A C G T A C G T C T G A A G T C A C G T A C T G A G T C C G T A A C T G A C T G C G T A A C G T C G T A C G T A
T G A C C A G T T G A C G C T A T A G C G T C A T A C G A G T C C T G A C A T G A T C G C T A G T C A G T C A G A C G T

Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-ACTGCAGGATAA
CHCAGCRGGRGG-
A C G T C T G A A G T C A C G T A C T G A G T C C G T A A C T G A C T G C G T A A C G T C G T A C G T A
T G A C G T C A A G T C G C T A C T A G A G T C C T G A C A T G A C T G C T A G T A C G T C A G A C G T

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--ACTGCAGGATAA------
NNCCTGNAAAAAAAAAAAAA
A C G T A C G T C T G A A G T C A C G T A C T G A G T C C G T A A C T G A C T G C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--ACTGCAGGATAA-
DCHCAGCAGGRGGCC
A C G T A C G T C T G A A G T C A C G T A C T G A G T C C G T A A C T G A C T G C G T A A C G T C G T A C G T A A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--ACTGCAGGATAA------
NNCCTGNAAAAAAAAAAAAA
A C G T A C G T C T G A A G T C A C G T A C T G A G T C C G T A A C T G A C T G C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G C T A C G T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A C T G A C T G A C T G A T C G A C T G A