Information for 3-CCTACTTGGTAG (Motif 4)

A G T C A G T C A C G T C G T A A G T C A C G T A C G T A C T G A C T G A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A A G T C A G T C C G T A C G T A A C T G A C G T C G T A A C T G A C T G
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets37.0 +/- 0.0bp
Average Position of motif in Background43.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.2/Jaspar

Match Rank:1
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CCTACTTGGTAG-
--TACTTGGCAGA
A G T C A G T C A C G T C G T A A G T C A C G T A C G T A C T G A C T G A C G T C G T A A C T G A C G T
A C G T A C G T G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A

ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer

Match Rank:2
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CCTACTTGGTAG
RGMCCTACTRTGTGC
A C G T A C G T A C G T A G T C A G T C A C G T C G T A A G T C A C G T A C G T A C T G A C T G A C G T C G T A A C T G
C T A G T C A G T G C A A G T C A G T C A G C T C G T A G T A C A G C T T C G A A G C T A T C G A G C T C T A G G A T C

Dmrt1/MA1603.1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCTACTTGGTAG-
GNTACTTTGTATC
A G T C A G T C A C G T C G T A A G T C A C G T A C G T A C T G A C T G A C G T C G T A A C T G A C G T
C A T G G C T A G C A T G C T A G A T C G C A T C G A T C G A T C T A G G C A T C G T A C G A T G A T C

PH0089.1_Isx/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCTACTTGGTAG-
ACNNCTAATTAGNNNN
A C G T A C G T A C G T A G T C A G T C A C G T C G T A A G T C A C G T A C G T A C T G A C T G A C G T C G T A A C T G A C G T
G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T

ZKSCAN1/MA1585.1/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCTACTTGGTAG
CACCTACTAT----
A C G T A C G T A G T C A G T C A C G T C G T A A G T C A C G T A C G T A C T G A C T G A C G T C G T A A C T G
A T G C T C G A G T A C T A G C A C G T C G T A G A T C A C G T T C G A A G C T A C G T A C G T A C G T A C G T

PH0005.1_Barhl1/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CCTACTTGGTAG--
GNNTTAATTGGTTGTT
A C G T A C G T A G T C A G T C A C G T C G T A A G T C A C G T A C G T A C T G A C T G A C G T C G T A A C T G A C G T A C G T
C A T G G C T A T G C A G A C T C G A T C G T A C G T A C G A T A G C T C T A G T A C G G A C T A G C T C A T G G A C T C A G T

LHX2/MA0700.2/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CCTACTTGGTAG
NNTAATTGGNN-
A G T C A G T C A C G T C G T A A G T C A C G T A C G T A C T G A C T G A C G T C G T A A C T G
C G T A G C A T C G A T C G T A G C T A C G A T C G A T C T A G T A C G G C A T G C A T A C G T

VENTX/MA0724.1/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CCTACTTGGTAG
-CTAATCGNT--
A G T C A G T C A C G T C G T A A G T C A C G T A C G T A C T G A C T G A C G T C G T A A C T G
A C G T G A T C A C G T C G T A C G T A C A G T A G T C C T A G A C T G G C A T A C G T A C G T

GBX1/MA0889.1/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CCTACTTGGTAG
GCTAATTAGN--
A G T C A G T C A C G T C G T A A G T C A C G T A C G T A C T G A C T G A C G T C G T A A C T G
T C A G A T G C C G A T C T G A C T G A A C G T A G C T C T G A T A C G A G C T A C G T A C G T

PH0033.1_Gbx1/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CCTACTTGGTAG--
TNCACTAATTAGTNNNN
A C G T A C G T A C G T A G T C A G T C A C G T C G T A A G T C A C G T A C G T A C T G A C T G A C G T C G T A A C T G A C G T A C G T
C G A T T G C A T G A C T G C A G T A C G A C T G T C A C T G A A G C T A C G T C T G A A C T G A G C T A C T G T A C G G A T C C G T A