Information for 1-CCATATACCC (Motif 3)

T G A C T G A C C T G A C G A T C G T A C A G T G T C A A T G C G T A C A G T C
Reverse Opposite:
C T A G C A T G A T C G A C G T G T C A A C G T C G T A A G C T A C T G A C T G
p-value:1e-10
log p-value:-2.365e+01
Information Content per bp:1.735
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif3.33%
Number of Background Sequences with motif176.5
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets86.0 +/- 58.3bp
Average Position of motif in Background97.0 +/- 63.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD13/MA0909.2/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCATATACCC
CCCAATAAAAC-
A C G T A C G T T G A C T G A C C T G A C G A T C G T A C A G T G T C A A T G C G T A C A G T C
T A G C T A G C A G T C G T C A C T G A C G A T C G T A C T G A G T C A T G C A T G A C A C G T

PB0163.1_Six6_2/Jaspar

Match Rank:2
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CCATATACCC----
ATGGGATATATCCGCCT
A C G T A C G T A C G T T G A C T G A C C T G A C G A T C G T A C A G T G T C A A T G C G T A C A G T C A C G T A C G T A C G T A C G T
T G C A C G A T A T C G T A C G A C T G T C G A G A C T C T G A A C G T G T C A A G C T G T A C A G T C T C A G G A T C G A T C C A G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCATATACCC
NGYCATAAAWCH
A C G T A C G T T G A C T G A C C T G A C G A T C G T A C A G T G T C A A T G C G T A C A G T C
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

CDX1/MA0878.2/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CCATATACCC
GGCCATAAAAC-
A C G T A C G T T G A C T G A C C T G A C G A T C G T A C A G T G T C A A T G C G T A C A G T C
C A T G C T A G A G T C T G A C C G T A A C G T C T G A C G T A C T G A G T C A A G T C A C G T

NEUROD2/MA0668.1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCATATACCC
GCCATATGGT-
A C G T T G A C T G A C C T G A C G A T C G T A C A G T G T C A A T G C G T A C A G T C
T C A G T G A C A T G C C T G A A G C T T G C A A G C T A C T G A C T G G A C T A C G T

HLTF/MA0109.1/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCATATACCC
AACCTTATAT--
A C G T A C G T T G A C T G A C C T G A C G A T C G T A C A G T G T C A A T G C G T A C A G T C
C G T A G C T A G T A C A G T C C G A T A C G T C G T A A C G T T C G A G A C T A C G T A C G T

NEUROG2/MA0669.1/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CCATATACCC
AACATATGTC-
A C G T T G A C T G A C C T G A C G A T C G T A C A G T G T C A A T G C G T A C A G T C
T C G A T G C A G A T C C T G A A C G T T G C A G C A T A C T G A G C T A G T C A C G T

HOXA13/MA0650.2/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CCATATACCC
CCCAATAAAAC-
A C G T A C G T T G A C T G A C C T G A C G A T C G T A C A G T G T C A A T G C G T A C A G T C
T G A C T A G C A G T C G T C A C G T A A C G T C T G A C T G A C G T A G T C A G T A C A C G T

BHLHE22/MA0818.1/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CCATATACCC
ACCATATGTT-
A C G T T G A C T G A C C T G A C G A T C G T A C A G T G T C A A T G C G T A C A G T C
T C G A T G A C G T A C C T G A A G C T G T C A G A C T A C T G A G C T G A C T A C G T

OLIG3/MA0827.1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CCATATACCC
ACCATATGTT-
A C G T T G A C T G A C C T G A C G A T C G T A C A G T G T C A A T G C G T A C A G T C
T C G A T G A C G T A C C T G A A C G T T G C A G A C T A C T G A C G T G A C T A C G T