Information for 2-CACCAATGCA (Motif 11)

A G T C C G T A G T A C G T A C G C T A C G T A C G A T A T C G A T G C C G T A
Reverse Opposite:
A C G T A T C G T A G C C G T A A C G T C G A T A C T G C A T G A C G T A C T G
p-value:1e-9
log p-value:-2.114e+01
Information Content per bp:1.840
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif5.15%
Number of Background Sequences with motif361.0
Percentage of Background Sequences with motif0.73%
Average Position of motif in Targets121.0 +/- 44.3bp
Average Position of motif in Background98.4 +/- 63.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox5/MA0087.1/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CACCAATGCA
NAACAAT---
A G T C C G T A G T A C G T A C G C T A C G T A C G A T A T C G A T G C C G T A
G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CACCAATGCA---
AATGAACAATGGAATT
A C G T A C G T A C G T A G T C C G T A G T A C G T A C G C T A C G T A C G A T A T C G A T G C C G T A A C G T A C G T A C G T
C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

PB0067.1_Sox18_1/Jaspar

Match Rank:3
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----CACCAATGCA-
NNTNANAACAATTNNA
A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T A C G T A C G C T A C G T A C G A T A T C G A T G C C G T A A C G T
C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A

PB0068.1_Sox1_1/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CACCAATGCA------
AATCAATTCAATAATT
A G T C C G T A G T A C G T A C G C T A C G T A C G A T A T C G A T G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CACCAATGCA-----
AATCGCACTGCATTCCG
A C G T A C G T A G T C C G T A G T A C G T A C G C T A C G T A C G A T A T C G A T G C C G T A A C G T A C G T A C G T A C G T A C G T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

ZNF143/MA0088.2/Jaspar

Match Rank:6
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CACCAATGCA---
TACCCACAATGCATTG
A C G T A C G T A C G T A G T C C G T A G T A C G T A C G C T A C G T A C G A T A T C G A T G C C G T A A C G T A C G T A C G T
A G C T C G T A G T A C G T A C A G T C C T G A A G T C T C G A C T G A C G A T T C A G A G T C G T C A G A C T G A C T C T A G

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CACCAATGCA
CRCCCACGCA
A G T C C G T A G T A C G T A C G C T A C G T A C G A T A T C G A T G C C G T A
G A T C C T G A A G T C T G A C A G T C G T C A A G T C C T A G A G T C G T C A

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CACCAATGCA----
--SSAATCCACANN
A G T C C G T A G T A C G T A C G C T A C G T A C G A T A T C G A T G C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

MF0011.1_HMG_class/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CACCAATGCA
-AACAAT---
A G T C C G T A G T A C G T A C G C T A C G T A C G A T A T C G A T G C C G T A
A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CACCAATGCA-
CCATCAATCAAA
A C G T A G T C C G T A G T A C G T A C G C T A C G T A C G A T A T C G A T G C C G T A A C G T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A