Information for 6-TTGGCACTCAGT (Motif 5)

A C G T A C G T A C T G A C T G A G T C C G T A A G T C A C G T A G T C C G T A A C T G A C G T
Reverse Opposite:
C G T A A G T C A C G T A C T G C G T A A C T G A C G T A C T G A G T C A G T C C G T A C G T A
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets61.0 +/- 0.0bp
Average Position of motif in Background33.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--TTGGCACTCAGT
NNTTGGCANN----
A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A A G T C A C G T A G T C C G T A A C T G A C G T
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TTGGCACTCAGT
NTTGGCANN----
A C G T A C G T A C G T A C T G A C T G A G T C C G T A A G T C A C G T A G T C C G T A A C T G A C G T
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TTGGCACTCAGT
SCTGTCAVTCAV-
A C G T A C G T A C G T A C T G A C T G A G T C C G T A A G T C A C G T A G T C C G T A A C T G A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

PKNOX1/MA0782.2/Jaspar

Match Rank:4
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---TTGGCACTCAGT
NNGCTGTCACTCANN
A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A A G T C A C G T A G T C C G T A A C T G A C G T
G A C T T C G A A T C G T G A C G C A T C T A G G A C T T A G C G C T A T G A C G A C T A G T C G C T A C G T A G C T A

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TTGGCACTCAGT
GGTTGGCAT-----
A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A A G T C A C G T A G T C C G T A A C T G A C G T
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.2/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TTGGCACTCAGT
TACTTGGCAGA----
A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A A G T C A C G T A G T C C G T A A C T G A C G T
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A A C G T A C G T A C G T A C G T

PBX3/MA1114.1/Jaspar

Match Rank:7
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TTGGCACTCAGT-
NNNCCTGTCACTCANNN
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A A G T C A C G T A G T C C G T A A C T G A C G T A C G T
T A G C A G T C T A C G A T G C T G A C G A C T A T C G G A C T A T G C G T C A T G A C G C A T A G T C G C T A T G A C T G A C A T G C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TTGGCACTCAGT
NCTGTCAATCAN-
A C G T A C G T A C G T A C T G A C T G A G T C C G T A A G T C A C G T A G T C C G T A A C T G A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TTGGCACTCAGT
CTTGGCAA-----
A C G T A C G T A C G T A C T G A C T G A G T C C G T A A G T C A C G T A G T C C G T A A C T G A C G T
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:10
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TTGGCACTCAGT
-AGCCACTCAAG
A C G T A C G T A C T G A C T G A G T C C G T A A G T C A C G T A G T C C G T A A C T G A C G T
A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G