Information for 1-CAAAACCTAAGT (Motif 1)

G T A C C G T A G T C A C G T A C G T A A G T C A G T C A C G T C G T A C G T A A C T G C G A T
Reverse Opposite:
C G T A A G T C A C G T A C G T C G T A A C T G A C T G C G A T A C G T A C G T A C G T A C T G
p-value:1e-11
log p-value:-2.676e+01
Information Content per bp:1.906
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif2.11%
Number of Background Sequences with motif6.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets100.0 +/- 62.4bp
Average Position of motif in Background85.8 +/- 47.4bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX3/MA0684.2/Jaspar

Match Rank:1
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CAAAACCTAAGT-
-AAAACCTCAAAT
G T A C C G T A G T C A C G T A C G T A A G T C A G T C A C G T C G T A C G T A A C T G C G A T A C G T
A C G T C G T A G C T A T C G A C T G A G A T C T G A C C G A T T G A C G C T A C T G A G C T A G A C T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:2
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CAAAACCTAAGT
AGAAACGAAAGT
G T A C C G T A G T C A C G T A C G T A A G T C A G T C A C G T C G T A C G T A A C T G C G A T
T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:3
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:CAAAACCTAAGT---
------TTAAGTGGT
G T A C C G T A G T C A C G T A C G T A A G T C A G T C A C G T C G T A C G T A A C T G C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T

ISL2/MA0914.1/Jaspar

Match Rank:4
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:CAAAACCTAAGT--
------TTAAGTGC
G T A C C G T A G T C A C G T A C G T A A G T C A G T C A C G T C G T A C G T A A C T G C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C

SIX1/MA1118.1/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CAAAACCTAAGT
-GTAACCTGATA
G T A C C G T A G T C A C G T A C G T A A G T C A G T C A C G T C G T A C G T A A C T G C G A T
A C G T C A T G C G A T G C T A C G T A G A T C G T A C G C A T C T A G C G T A A C G T G T C A

PB0121.1_Foxj3_2/Jaspar

Match Rank:6
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CAAAACCTAAGT
AACACCAAAACAAAGGA
A C G T A C G T A C G T A C G T A C G T G T A C C G T A G T C A C G T A C G T A A G T C A G T C A C G T C G T A C G T A A C T G C G A T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

PH0115.1_Nkx2-6/Jaspar

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CAAAACCTAAGT------
--AATNTTAAGTGGNTNN
G T A C C G T A G T C A C G T A C G T A A G T C A G T C A C G T C G T A C G T A A C T G C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:8
Score:0.54
Offset:6
Orientation:forward strand
Alignment:CAAAACCTAAGT--
------CTAATKGV
G T A C C G T A G T C A C G T A C G T A A G T C A G T C A C G T C G T A C G T A A C T G C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C

BHLHE23/MA0817.1/Jaspar

Match Rank:9
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CAAAACCTAAGT--
--AAACATATGTTT
G T A C C G T A G T C A C G T A C G T A A G T C A G T C A C G T C G T A C G T A A C T G C G A T A C G T A C G T
A C G T A C G T C G T A T C G A T G C A G T A C C T G A A G C T T G C A G A C T A C T G A C G T G A C T C G A T

PH0094.1_Lhx4/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CAAAACCTAAGT------
-CAAAGCTAATTAGNTTN
G T A C C G T A G T C A C G T A C G T A A G T C A G T C A C G T C G T A C G T A A C T G C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G A T C T G C A G C T A T G C A T A C G A T G C G A C T T C G A C T G A A G C T A G C T C T G A A T C G A G C T G C A T C A G T G T C A