Information for 6-GAGAATCCATCA (Motif 8)

A C T G C G T A A C T G C G T A C G T A A C G T A G T C A G T C C G T A A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C G T A G T C A C G T A G T C
p-value:1e-4
log p-value:-1.143e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets137.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:1
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:GAGAATCCATCA
--YCATCMATCA
A C T G C G T A A C T G C G T A C G T A A C G T A G T C A G T C C G T A A C G T A G T C C G T A
A C G T A C G T G A T C G T A C C T G A A C G T G A T C G T C A C T G A A C G T G A T C G C T A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:2
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GAGAATCCATCA-
-GYCATCMATCAT
A C T G C G T A A C T G C G T A C G T A A C G T A G T C A G T C C G T A A C G T A G T C C G T A A C G T
A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

PB0144.1_Lef1_2/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GAGAATCCATCA----
GAAGATCAATCACTTA
A C T G C G T A A C T G C G T A C G T A A C G T A G T C A G T C C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T
T A C G C G T A T C G A T A C G G C T A C G A T A G T C C G T A C T G A C A G T G A T C C T G A G T A C A G C T G C A T C G T A

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GAGAATCCATCA----
GAAGATCAATCACTAA
A C T G C G T A A C T G C G T A C G T A A C G T A G T C A G T C C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T
T A C G C T A G T C G A T A C G G C T A G C A T A G T C C G T A C T G A C A G T G A T C C T G A A T G C A C G T G C T A C G T A

DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GAGAATCCATCA--
BCWGATTCAATCAAN
A C G T A C T G C G T A A C T G C G T A C G T A A C G T A G T C A G T C C G T A A C G T A G T C C G T A A C G T A C G T
A G T C A T G C C G A T A C T G C G T A A C G T A G C T A G T C C G T A C G T A A C G T A G T C G C T A G C T A T G C A

PBX1/MA0070.1/Jaspar

Match Rank:6
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GAGAATCCATCA--
--CCATCAATCAAA
A C T G C G T A A C T G C G T A C G T A A C G T A G T C A G T C C G T A A C G T A G T C C G T A A C G T A C G T
A C G T A C G T G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

ATF4/MA0833.2/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GAGAATCCATCA---
-NNATTGCATCATNN
A C T G C G T A A C T G C G T A C G T A A C G T A G T C A G T C C G T A A C G T A G T C C G T A A C G T A C G T A C G T
A C G T C G A T C A G T T C G A G C A T C A G T C T A G G A T C T C G A G A C T G T A C C G T A A G C T G A C T G A C T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:8
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GAGAATCCATCA
--TCATCAATCA
A C T G C G T A A C T G C G T A C G T A A C G T A G T C A G T C C G T A A C G T A G T C C G T A
A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

CEBPG(var.2)/MA1636.1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GAGAATCCATCA---
NNGATTGCATCATNN
A C T G C G T A A C T G C G T A C G T A A C G T A G T C A G T C C G T A A C G T A G T C C G T A A C G T A C G T A C G T
C T G A C G A T C A T G T C G A G C A T C A G T C A T G G A T C C T G A G A C T G T A C G C T A A G C T G C A T G C A T

MEIS1(var.2)/MA1639.1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GAGAATCCATCA--
-GTCATCAATCATT
A C T G C G T A A C T G C G T A C G T A A C G T A G T C A G T C C G T A A C G T A G T C C G T A A C G T A C G T
A C G T C T A G G A C T G A T C C T G A C A G T G T A C G T C A G C T A G C A T G T A C G C T A G C A T G C A T