Information for 4-GAGAAGRT (Motif 27)

A C T G G T C A A C T G C G T A C G T A A T C G T C G A A C G T
Reverse Opposite:
C G T A A G C T A T G C A C G T A C G T A G T C A C G T A G T C
p-value:1e-3
log p-value:-8.653e+00
Information Content per bp:1.864
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif7.25%
Number of Background Sequences with motif1415.0
Percentage of Background Sequences with motif2.87%
Average Position of motif in Targets103.4 +/- 54.1bp
Average Position of motif in Background99.1 +/- 60.2bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.30
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:GAGAAGRT
-NGAAGC-
A C T G G T C A A C T G C G T A C G T A A T C G T C G A A C G T
A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T

PRDM1/MA0508.3/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GAGAAGRT-
NAGAGAAAGNA
A C G T A C G T A C T G G T C A A C T G C G T A C G T A A T C G T C G A A C G T A C G T
C T G A C T G A C A T G G C T A C A T G G C T A C G T A G C T A C A T G C G T A C T G A

Mecom/MA0029.1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GAGAAGRT----
AAGATAAGATAACA
A C G T A C G T A C T G G T C A A C T G C G T A C G T A A T C G T C G A A C G T A C G T A C G T A C G T A C G T
C T G A C G T A A C T G C G T A G A C T C G T A C T G A A C T G C G T A A G C T G C T A C T G A A C G T G T C A

GATA6/MA1104.2/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GAGAAGRT--
NNAGATAAGATAN
A C G T A C G T A C G T A C T G G T C A A C T G C G T A C G T A A T C G T C G A A C G T A C G T A C G T
C G T A C T G A C G T A C T A G C G T A G C A T C G T A C G T A T A C G T C G A C G A T C G T A C G T A

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----GAGAAGRT
GAAAGTGAAAGT
A C G T A C G T A C G T A C G T A C T G G T C A A C T G C G T A C G T A A T C G T C G A A C G T
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T

PB0161.1_Rxra_2/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GAGAAGRT------
TCGCGAAGGTTGTACT
A C G T A C G T A C T G G T C A A C T G C G T A C G T A A T C G T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T T G A C T C A G G T A C T C A G G C T A G C T A C T A G A C T G A C G T A G C T T C A G A G C T C G T A G T A C C A G T

Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer

Match Rank:7
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GAGAAGRT
NVAGATAAGR-
A C G T A C G T A C G T A C T G G T C A A C T G C G T A C G T A A T C G T C G A A C G T
T C A G T A G C G C T A C A T G C T G A G C A T C G T A C T G A T A C G T C G A A C G T

GATA4/MA0482.2/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GAGAAGRT-
NNAGATAAGGNN
A C G T A C G T A C G T A C T G G T C A A C T G C G T A C G T A A T C G T C G A A C G T A C G T
C G T A T C G A C G T A T C A G C G T A C A G T C G T A C G T A C T A G T C A G C G T A C G T A

Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GAGAAGRT
NBWGATAAGR-
A C G T A C G T A C G T A C T G G T C A A C T G C G T A C G T A A T C G T C G A A C G T
T A C G A T G C G C T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A A C G T

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:10
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GAGAAGRT
NAGATAAGNN
A C G T A C G T A C T G G T C A A C T G C G T A C G T A A T C G T C G A A C G T
T A C G G C T A A C T G C G T A A C G T C G T A C T G A T A C G T C A G T C G A