Information for 1-GCCGCCGTGC (Motif 1)

A C T G A G T C A G T C A C T G A G T C A G T C A C T G A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C C G T A A G T C A C T G A C T G A G T C A C T G A C T G A G T C
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.0 +/- 0.0bp
Average Position of motif in Background139.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.2/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GCCGCCGTGC
CGCCGCCATNN
A C G T A C T G A G T C A G T C A C T G A G T C A G T C A C T G A C G T A C T G A G T C
A T G C C A T G A T G C T A G C C T A G A G T C A T G C T C G A A G C T A T G C C A G T

PB0113.1_E2F3_2/Jaspar

Match Rank:2
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------GCCGCCGTGC-
NNNNTTGGCGCCGANNN
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C T G A G T C A G T C A C T G A C G T A C T G A G T C A C G T
T A C G T A G C A C G T G A C T A C G T G C A T C T A G A T C G G T A C A C T G A T G C A G T C C T A G G C T A C T A G A T G C C A G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:3
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GCCGCCGTGC
--GGACGTGC
A C T G A G T C A G T C A C T G A G T C A G T C A C T G A C G T A C T G A G T C
A C G T A C G T T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C

PB0112.1_E2F2_2/Jaspar

Match Rank:4
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------GCCGCCGTGC-
NNNNTTGGCGCCGANNN
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C T G A G T C A G T C A C T G A C G T A C T G A G T C A C G T
T A G C T G A C A G C T A G C T C A G T G A C T C T A G A T C G G T A C A C T G T A G C G A T C C T A G G C T A T C G A A T C G C A T G

HIF1A/MA1106.1/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GCCGCCGTGC--
--GTACGTGCCC
A C T G A G T C A G T C A C T G A G T C A G T C A C T G A C G T A C T G A G T C A C G T A C G T
A C G T A C G T T A C G A G C T C G T A A G T C C T A G A G C T T C A G G T A C A T G C A T G C

ZFP57/MA1583.1/Jaspar

Match Rank:6
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GCCGCCGTGC
GCATTGCCGCAGT--
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C T G A G T C A G T C A C T G A C G T A C T G A G T C
A T C G A T G C T C G A A C G T A C G T A T C G G A T C T A G C C T A G A T G C T C G A T A C G A G C T A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCCGCCGTGC--
GCCGCCATCTTG
A C T G A G T C A G T C A C T G A G T C A G T C A C T G A C G T A C T G A G T C A C G T A C G T
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCCGCCGTGC
GGGTACGTGC
A C T G A G T C A G T C A C T G A G T C A G T C A C T G A C G T A C T G A G T C
C T A G A T C G T C A G C A G T C T G A A T G C A C T G A G C T A C T G G T A C

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:9
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GCCGCCGTGC-
---TACGTGCV
A C T G A G T C A G T C A C T G A G T C A G T C A C T G A C G T A C T G A G T C A C G T
A C G T A C G T A C G T A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C

Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GCCGCCGTGC---
-NHGTCGTGAYDN
A C T G A G T C A G T C A C T G A G T C A G T C A C T G A C G T A C T G A G T C A C G T A C G T A C G T
A C G T C T A G G T C A C A T G A C G T A T G C T C A G C A G T A C T G G T C A A G T C C G A T A G T C