Information for 3-CCTGGCTTAA (Motif 6)

G T A C A G T C A C G T A C T G T C A G G T A C A C G T C A G T G C T A C G T A
Reverse Opposite:
C G A T C G A T G T C A C G T A A C T G A G T C A G T C C G T A C T A G A C T G
p-value:1e-8
log p-value:-1.979e+01
Information Content per bp:1.845
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif3.33%
Number of Background Sequences with motif231.9
Percentage of Background Sequences with motif0.48%
Average Position of motif in Targets113.7 +/- 45.8bp
Average Position of motif in Background97.1 +/- 58.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RHOXF1/MA0719.1/Jaspar

Match Rank:1
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CCTGGCTTAA
--NGGATTAN
G T A C A G T C A C G T A C T G T C A G G T A C A C G T C A G T G C T A C G T A
A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CCTGGCTTAA
-NGGGATTA-
G T A C A G T C A C G T A C T G T C A G G T A C A C G T C A G T G C T A C G T A
A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T

PITX3/MA0714.1/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CCTGGCTTAA-
--GGGATTANN
G T A C A G T C A C G T A C T G T C A G G T A C A C G T C A G T G C T A C G T A A C G T
A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCTGGCTTAA
GGTCTGGCAT--
A C G T A C G T G T A C A G T C A C G T A C T G T C A G G T A C A C G T C A G T G C T A C G T A
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T

ZBTB6/MA1581.1/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CCTGGCTTAA----
-NNGGCTCAAGGNN
G T A C A G T C A C G T A C T G T C A G G T A C A C G T C A G T G C T A C G T A A C G T A C G T A C G T A C G T
A C G T A T G C A C T G C T A G C A T G A G T C C A G T A T G C G T C A T C G A C A T G A T C G T C G A G T A C

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CCTGGCTTAA
NTTGGCANN-
G T A C A G T C A C G T A C T G T C A G G T A C A C G T C A G T G C T A C G T A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:7
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CCTGGCTTAA-
---GGATTAGC
G T A C A G T C A C G T A C T G T C A G G T A C A C G T C A G T G C T A C G T A A C G T
A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

PB0185.1_Tcf1_2/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CCTGGCTTAA-
TTGCCCGGATTAGG
A C G T A C G T A C G T G T A C A G T C A C G T A C T G T C A G G T A C A C G T C A G T G C T A C G T A A C G T
C G A T A C G T T C A G G A T C T A G C A G T C T A C G A C T G C T G A C A G T A C G T C G T A C A T G C T A G

PITX1/MA0682.2/Jaspar

Match Rank:9
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CCTGGCTTAA
--NGGATTAN
G T A C A G T C A C G T A C T G T C A G G T A C A C G T C A G T G C T A C G T A
A C G T A C G T C A T G T C A G C A T G G T C A A C G T A C G T C G T A C T A G

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CCTGGCTTAA
NNACTTGCCTT--
A C G T A C G T A C G T G T A C A G T C A C G T A C T G T C A G G T A C A C G T C A G T G C T A C G T A
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T