Information for 5-CACTTTCAGACA (Motif 6)

A G T C C G T A A G T C A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T A G T C A C G T A C T G C G T A C G T A C G T A A C T G A C G T A C T G
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets85.0 +/- 0.0bp
Average Position of motif in Background98.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CACTTTCAGACA-----
CAAATCCAGACATCACA
A G T C C G T A A G T C A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

PB0170.1_Sox17_2/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CACTTTCAGACA--
GACCACATTCATACAAT
A C G T A C G T A C G T A G T C C G T A A G T C A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C C G T A A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:CACTTTCAGACA-
-----BCAGACWA
A G T C C G T A A G T C A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:CACTTTCAGACA-
-----CCAGACAG
A G T C C G T A A G T C A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:CACTTTCAGACA---
-----CCAGACRSVB
A G T C C G T A A G T C A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CACTTTCAGACA
TGGTTTCAGT--
A G T C C G T A A G T C A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C C G T A
G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CACTTTCAGACA
CGGTTTCAAA--
A G T C C G T A A G T C A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C C G T A
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T

Smad4/MA1153.1/Jaspar

Match Rank:8
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CACTTTCAGACA
----TCTAGACA
A G T C C G T A A G T C A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:9
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----CACTTTCAGACA
ACTTTCACTTTC-----
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C C G T A
C T G A A T G C G A C T C G A T A G C T A G T C C G T A A T G C A C G T A C G T G A C T A G T C A C G T A C G T A C G T A C G T A C G T

ELF1/MA0473.3/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CACTTTCAGACA
NNCACTTCCTGNNN
A C G T A C G T A G T C C G T A A G T C A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C C G T A
A T G C A G T C A G T C G C T A A G T C G C A T A C G T G A T C T A G C A C G T A T C G A C G T G A C T G A C T