Information for 3-TTGTCTCG (Motif 23)

A C G T A C G T A C T G A C G T A G T C A G C T A G T C A C T G
Reverse Opposite:
A G T C A C T G C T G A A C T G C G T A A G T C C G T A G T C A
p-value:1e-5
log p-value:-1.285e+01
Information Content per bp:1.950
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif2.38%
Number of Background Sequences with motif167.7
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets84.3 +/- 58.5bp
Average Position of motif in Background101.0 +/- 53.8bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4/MA1153.1/Jaspar

Match Rank:1
Score:0.76
Offset:1
Orientation:forward strand
Alignment:TTGTCTCG-
-TGTCTAGA
A C G T A C G T A C T G A C G T A G T C A G C T A G T C A C T G A C G T
A C G T G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TTGTCTCG
CTGTCTGG
A C G T A C G T A C T G A C G T A G T C A G C T A G T C A C T G
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----TTGTCTCG-----
NNTNNTGTCTGGNNTNG
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C A G C T A G T C A C T G A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer

Match Rank:4
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----TTGTCTCG
BCCWTTGTBYKV
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C A G C T A G T C A C T G
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A T G C G A C T A C T G T A C G

Sox6/MA0515.1/Jaspar

Match Rank:5
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---TTGTCTCG
CCATTGTTTT-
A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C A G C T A G T C A C T G
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TTGTCTCG
TWGTCTGV
A C G T A C G T A C T G A C G T A G T C A G C T A G T C A C T G
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---TTGTCTCG
CCATTGTTNY-
A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C A G C T A G T C A C T G
A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T A C G T

SMAD5/MA1557.1/Jaspar

Match Rank:8
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TTGTCTCG---
-TGTCTAGACA
A C G T A C G T A C T G A C G T A G T C A G C T A G T C A C T G A C G T A C G T A C G T
A C G T C G A T C T A G C A G T A T G C A C G T T G C A A C T G G T C A A G T C C T G A

Sox17/MA0078.1/Jaspar

Match Rank:9
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----TTGTCTCG
CTCATTGTC---
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C A G C T A G T C A C T G
G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T A C G T

Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer

Match Rank:10
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TTGTCTCG-
CCATTGTTYYBB
A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C A G C T A G T C A C T G A C G T
A T G C G A T C C G T A A C G T A C G T A C T G A C G T A G C T A G C T A G T C A T C G A C T G