Information for 17-CAGCTTATTCAT (Motif 28)

A G T C C G T A A C T G A G T C A C G T C G A T G T C A A C G T A C G T G T A C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G C G T A C G T A A C G T C G T A C G T A A C T G G T A C A C G T A C T G
p-value:1e-4
log p-value:-1.077e+01
Information Content per bp:1.902
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif18.5
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets108.0 +/- 42.4bp
Average Position of motif in Background91.6 +/- 59.3bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.75
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:CAGCTTATTCAT
--GHATATKCAT
A G T C C G T A A C T G A G T C A C G T C G A T G T C A A C G T A C G T G T A C C G T A A C G T
A C G T A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CAGCTTATTCAT
--GAATATTCAT
A G T C C G T A A C T G A G T C A C G T C G A T G T C A A C G T A C G T G T A C C G T A A C G T
A C G T A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T

PH0001.1_Alx3/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CAGCTTATTCAT---
NTNAGCTAATTAGTTNA
A C G T A C G T A G T C C G T A A C T G A G T C A C G T C G A T G T C A A C G T A C G T G T A C C G T A A C G T A C G T A C G T A C G T
A G T C C G A T A T G C T C G A C T A G G A T C A G C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C G A T A G C T G C T A

POU6F2/MA0793.1/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CAGCTTATTCAT
-AGCTCATTAT-
A G T C C G T A A C T G A G T C A C G T C G A T G T C A A C G T A C G T G T A C C G T A A C G T
A C G T C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T A C G T

PH0135.1_Phox2a/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CAGCTTATTCAT----
NNACTAATTAATNNNN
A G T C C G T A A C T G A G T C A C G T C G A T G T C A A C G T A C G T G T A C C G T A A C G T A C G T A C G T A C G T A C G T
A T G C A G C T T C G A G A T C A G C T G T C A C G T A A G C T A C G T C T G A C T G A A G C T C A T G T G A C A G C T T C A G

PH0151.1_Pou6f1_1/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CAGCTTATTCAT---
NNNACCTCATTATCNTN
A C G T A C G T A G T C C G T A A C T G A G T C A C G T C G A T G T C A A C G T A C G T G T A C C G T A A C G T A C G T A C G T A C G T
C A T G G A T C G T C A C G T A T A C G G T A C A C G T G T A C C G T A C G A T C G A T C G T A C G A T A T G C A C T G C G A T A G T C

PH0074.1_Hoxd1/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CAGCTTATTCAT---
NNNAGCTAATTAGCTTA
A C G T A C G T A G T C C G T A A C T G A G T C A C G T C G A T G T C A A C G T A C G T G T A C C G T A A C G T A C G T A C G T A C G T
C G A T G T C A G T A C T G C A T C A G A G T C G A C T T G C A C G T A C G A T A C G T C T G A T C A G A G C T C G A T A G C T G C T A

PH0154.1_Prrx1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CAGCTTATTCAT---
ANNAGTTAATTAGTTAN
A C G T A C G T A G T C C G T A A C T G A G T C A C G T C G A T G T C A A C G T A C G T G T A C C G T A A C G T A C G T A C G T A C G T
T C G A A T C G G A C T G T C A T C A G A G C T G A C T C T G A C T G A A G C T A C G T C T G A C T A G A G C T C A G T T G C A A T G C

PB0170.1_Sox17_2/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CAGCTTATTCAT-----
GACCACATTCATACAAT
A G T C C G T A A C T G A G T C A C G T C G A T G T C A A C G T A C G T G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

PH0150.1_Pou4f3/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CAGCTTATTCAT----
GACNTCATTAATAANN
A G T C C G T A A C T G A G T C A C G T C G A T G T C A A C G T A C G T G T A C C G T A A C G T A C G T A C G T A C G T A C G T
C T A G C T G A T G A C G A T C C A G T G T A C C G T A C G A T C G A T C G T A C T G A C G A T C G T A G T C A A G T C C G A T