Information for 4-TTTCATGACAAG (Motif 6)

A C G T A C G T A C G T A G T C C G T A A C G T A C T G C G T A A G T C C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A C T G A C G T A G T C C G T A A C G T A C T G C G T A C G T A C G T A
p-value:1e-9
log p-value:-2.130e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.8 +/- 20.8bp
Average Position of motif in Background140.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TTTCATGACAAG
TTTCATTRCC--
A C G T A C G T A C G T A G T C C G T A A C G T A C T G C G T A A G T C C G T A C G T A A C T G
G A C T A G C T G A C T A T G C G C T A A C G T A C G T C T G A A T G C G A T C A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TTTCATGACAAG
ACATTCATGACACG
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G C G T A A G T C C G T A C G T A A C T G
C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TTTCATGACAAG
TTTCATKGCC--
A C G T A C G T A C G T A G T C C G T A A C G T A C T G C G T A A G T C C G T A C G T A A C T G
G C A T A C G T C G A T A G T C G T C A A G C T C A G T C T A G A T G C G A T C A C G T A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TTTCATGACAAG
NTTTTACGAC---
A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G C G T A A G T C C G T A C G T A A C T G
C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C A C G T A C G T A C G T

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TTTCATGACAAG
NTTTCATTRCHD-
A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G C G T A A G T C C G T A C G T A A C T G
C G A T G C A T A C G T C G A T A G T C C G T A A C G T A C G T C T A G A G T C G A C T C A G T A C G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TTTCATGACAAG-
ATTTGCATAACAAAG
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G C G T A A G T C C G T A C G T A A C T G A C G T
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TTTCATGACAAG
TTTTATGGCB--
A C G T A C G T A C G T A G T C C G T A A C G T A C T G C G T A A G T C C G T A C G T A A C T G
G C A T C G A T G C A T G A C T G C T A A G C T C A T G C T A G A T G C A G T C A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:8
Score:0.64
Offset:4
Orientation:forward strand
Alignment:TTTCATGACAAG
----TTGACAG-
A C G T A C G T A C G T A G T C C G T A A C G T A C T G C G T A A G T C C G T A C G T A A C T G
A C G T A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T

HOXB9/MA1503.1/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TTTCATGACAAG
NTTTTACGAC---
A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G C G T A A G T C C G T A C G T A A C T G
C T G A C G A T C A G T A C G T C G A T G T C A A G T C A C T G C T G A A G T C A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TTTCATGACAAG
NTTTTATGAC---
A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G C G T A A G T C C G T A C G T A A C T G
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T A C G T