| p-value: | 1e-5 |
| log p-value: | -1.198e+01 |
| Information Content per bp: | 1.947 |
| Number of Target Sequences with motif | 3.0 |
| Percentage of Target Sequences with motif | 0.73% |
| Number of Background Sequences with motif | 4.7 |
| Percentage of Background Sequences with motif | 0.01% |
| Average Position of motif in Targets | 124.0 +/- 37.3bp |
| Average Position of motif in Background | 61.7 +/- 22.3bp |
| Strand Bias (log2 ratio + to - strand density) | -2.3 |
| Multiplicity (# of sites on avg that occur together) | 2.00 |
| Motif File: | file (matrix) reverse opposite |
| SVG Files for Logos: | forward logo reverse opposite |
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer
| Match Rank: | 1 |
| Score: | 0.66 |
| Offset: | 2 |
| Orientation: | reverse strand |
| Alignment: | CATCATCCATGA --YCATCMATCA |
|
|
|
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer
| Match Rank: | 2 |
| Score: | 0.65 |
| Offset: | 1 |
| Orientation: | forward strand |
| Alignment: | CATCATCCATGA- -GYCATCMATCAT |
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|
|
PB0178.1_Sox8_2/Jaspar
| Match Rank: | 3 |
| Score: | 0.63 |
| Offset: | 2 |
| Orientation: | forward strand |
| Alignment: | CATCATCCATGA---- --ACATTCATGACACG |
|
|
|
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer
| Match Rank: | 4 |
| Score: | 0.62 |
| Offset: | -3 |
| Orientation: | forward strand |
| Alignment: | ---CATCATCCATGA ATGAATWATTCATGA |
|
|
|
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer
| Match Rank: | 5 |
| Score: | 0.61 |
| Offset: | -3 |
| Orientation: | forward strand |
| Alignment: | ---CATCATCCATGA ATGCATWATGCATRW |
|
|
|
CUX1/MA0754.1/Jaspar
| Match Rank: | 6 |
| Score: | 0.58 |
| Offset: | 2 |
| Orientation: | forward strand |
| Alignment: | CATCATCCATGA --TAATCGATAA |
|
|
|
CUX2/MA0755.1/Jaspar
| Match Rank: | 7 |
| Score: | 0.58 |
| Offset: | 2 |
| Orientation: | forward strand |
| Alignment: | CATCATCCATGA --TAATCGATAA |
|
|
|
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer
| Match Rank: | 8 |
| Score: | 0.57 |
| Offset: | 1 |
| Orientation: | reverse strand |
| Alignment: | CATCATCCATGA -NTNATCGATA- |
|
|
|
JUN/MA0488.1/Jaspar
| Match Rank: | 9 |
| Score: | 0.57 |
| Offset: | -4 |
| Orientation: | reverse strand |
| Alignment: | ----CATCATCCATGA ATGACATCATCNN--- |
|
|
|
RHOXF1/MA0719.1/Jaspar
| Match Rank: | 10 |
| Score: | 0.56 |
| Offset: | 1 |
| Orientation: | forward strand |
| Alignment: | CATCATCCATGA -ATAATCCC--- |
|
|
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