Information for 20-CAGGTCTCAC (Motif 34)

A G T C C G T A A C T G A C T G A C G T A G T C A C G T A G T C C G T A A G T C
Reverse Opposite:
A C T G A C G T A C T G C G T A A C T G C G T A A G T C A G T C A C G T A C T G
p-value:1e-2
log p-value:-6.548e+00
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif20.4
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets77.2 +/- 63.3bp
Average Position of motif in Background134.5 +/- 40.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PKNOX2/MA0783.1/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CAGGTCTCAC
TGACAGGTGTCA-
A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T A G T C A C G T A G T C C G T A A G T C
C G A T T A C G C T G A A G T C C G T A C A T G T A C G A G C T T C A G G A C T T G A C C T G A A C G T

SIX2/MA1119.1/Jaspar

Match Rank:2
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CAGGTCTCAC--
GTATCAGGTTTCAGNN
A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T A G T C A C G T A G T C C G T A A G T C A C G T A C G T
C T A G C A G T T G C A G C A T G A T C C G T A C A T G C T A G G A C T C A G T C G A T G T A C G C T A A C T G C G A T C G A T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CAGGTCTCAC
-AGGTGTCA-
A G T C C G T A A C T G A C T G A C G T A G T C A C G T A G T C C G T A A G T C
A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T

PH0164.1_Six4/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CAGGTCTCAC----
TNNNNGGTGTCATNTNT
A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T A G T C A C G T A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T

Ptf1a(var.3)/MA1620.1/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CAGGTCTCAC
NNACAGGTGTNN-
A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T A G T C A C G T A G T C C G T A A G T C
C T A G T G A C T C G A T G A C T G C A A T C G T A C G G C A T A C T G A G C T A C T G A G C T A C G T

TGIF2/MA0797.1/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CAGGTCTCAC
TGACAGCTGTCA-
A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T A G T C A C G T A G T C C G T A A G T C
G C A T C T A G C T G A G A T C C T G A C A T G T A G C G A C T C T A G G A C T A T G C C G T A A C G T

Rbpjl/MA1621.1/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CAGGTCTCAC
NNNACAGGTGTNNN
A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T A G T C A C G T A G T C C G T A A G T C
T C A G C T A G T A C G T C G A T A G C T C G A A T C G T A C G G A C T C A T G A G C T A C G T A G T C T A C G

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CAGGTCTCAC
NNCAGGTGNN--
A C G T A C G T A G T C C G T A A C T G A C T G A C G T A G T C A C G T A G T C C G T A A G T C
C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G A C G T A C G T

TGIF1/MA0796.1/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CAGGTCTCAC
TGACAGCTGTCA-
A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T A G T C A C G T A G T C C G T A A G T C
G C A T T C A G T C G A A G T C T C G A A C T G T A G C A G C T T A C G G C A T G T A C C G T A A C G T

TBX4/MA0806.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CAGGTCTCAC
-AGGTGTGA-
A G T C C G T A A C T G A C T G A C G T A G T C A C G T A G T C C G T A A G T C
A C G T C T G A T C A G T A C G A G C T A C T G G A C T A C T G C T G A A C G T