Information for 2-GAGCCTKBACTG (Motif 2)

C T A G C T G A A C T G A T G C G T A C A G C T A C G T A T G C C G T A A T G C A C G T A C T G
Reverse Opposite:
A G T C C G T A T A C G C G A T T A C G T G C A C T G A A C T G A T C G T A G C A G C T A G T C
p-value:1e-11
log p-value:-2.626e+01
Information Content per bp:1.719
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif4.88%
Number of Background Sequences with motif428.9
Percentage of Background Sequences with motif0.87%
Average Position of motif in Targets107.7 +/- 48.0bp
Average Position of motif in Background102.0 +/- 57.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:1
Score:0.61
Offset:4
Orientation:forward strand
Alignment:GAGCCTKBACTG--
----BTBRAGTGSN
C T A G C T G A A C T G A T G C G T A C A G C T A C G T A T G C C G T A A T G C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

NKX2-5/MA0063.2/Jaspar

Match Rank:2
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GAGCCTKBACTG--
---NNTTGAGTGNN
C T A G C T G A A C T G A T G C G T A C A G C T A C G T A T G C C G T A A T G C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T C G A T A G C T C G A T G C A T C T A G C G T A C T A G G A C T C T A G A C T G A G C T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:3
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GAGCCTKBACTG--
----CTYRAGTGSY
C T A G C T G A A C T G A T G C G T A C A G C T A C G T A T G C C G T A A T G C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:4
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GAGCCTKBACTG---
----CTTGAGTGGCT
C T A G C T G A A C T G A T G C G T A C A G C T A C G T A T G C C G T A A T G C A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:5
Score:0.58
Offset:5
Orientation:forward strand
Alignment:GAGCCTKBACTG---
-----TTRAGTGSYK
C T A G C T G A A C T G A T G C G T A C A G C T A C G T A T G C C G T A A T G C A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

NKX2-2/MA1645.1/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GAGCCTKBACTG----
--NNNTTGAGTGGNNN
C T A G C T G A A C T G A T G C G T A C A G C T A C G T A T G C C G T A A T G C A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C G A T A G T C A G C T C A G T T A C G C G T A C A T G C G A T C T A G A C T G G C A T C G A T C T G A

NKX2-8/MA0673.1/Jaspar

Match Rank:7
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GAGCCTKBACTG-
----NTCAAGTGG
C T A G C T G A A C T G A T G C G T A C A G C T A C G T A T G C C G T A A T G C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GAGCCTKBACTG
CNAGGCCT------
A C G T A C G T C T A G C T G A A C T G A T G C G T A C A G C T A C G T A T G C C G T A A T G C A C G T A C T G
A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GAGCCTKBACTG-----
NNNANTGCAGTGCNNTT
C T A G C T G A A C T G A T G C G T A C A G C T A C G T A T G C C G T A A T G C A C G T A C T G A C G T A C G T A C G T A C G T A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

NKX2-3/MA0672.1/Jaspar

Match Rank:10
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GAGCCTKBACTG--
----NTCAAGTGGN
C T A G C T G A A C T G A T G C G T A C A G C T A C G T A T G C C G T A A T G C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T