Information for 1-GGCTCGACAC (Motif 1)

A C T G A C T G A G T C A C G T A G T C A C T G C G T A A G T C C G T A A G T C
Reverse Opposite:
A C T G A C G T A C T G A C G T A G T C A C T G C G T A A C T G A G T C A G T C
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets129.0 +/- 0.0bp
Average Position of motif in Background45.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD5/MA1557.1/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GGCTCGACAC
TGTCTAGACA-
A C G T A C T G A C T G A G T C A C G T A G T C A C T G C G T A A G T C C G T A A G T C
G A C T T C A G C A G T T G A C A C G T T G C A T A C G G T C A G A T C G C T A A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GGCTCGACAC
CGTCTAGACA-
A C G T A C T G A C T G A G T C A C G T A G T C A C T G C G T A A G T C C G T A A G T C
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T

Smad4/MA1153.1/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GGCTCGACAC
-TCTAGACA-
A C T G A C T G A G T C A C G T A G T C A C T G C G T A A G T C C G T A A G T C
A C G T A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T

PB0117.1_Eomes_2/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GGCTCGACAC------
NNGGCGACACCTCNNN
A C T G A C T G A G T C A C G T A G T C A C T G C G T A A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A T C G T C G A T C A G A T C G T G A C C T A G G C T A A G T C C T G A A T G C A G T C G A C T G A T C A G T C T A C G A G T C

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGCTCGACAC
NGCTN-----
A C T G A C T G A G T C A C G T A G T C A C T G C G T A A G T C C G T A A G T C
T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T

PB0034.1_Irf4_1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GGCTCGACAC----
CGTATCGAAACCAAA
A C G T A C T G A C T G A G T C A C G T A G T C A C T G C G T A A G T C C G T A A G T C A C G T A C G T A C G T A C G T
T G A C C T A G C G A T C G T A G A C T A G T C C T A G T C G A C G T A C G T A T A G C G A T C C T G A G T C A C G T A

ZBTB6/MA1581.1/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GGCTCGACAC-
NNGGCTCAAGGNN
A C G T A C G T A C T G A C T G A G T C A C G T A G T C A C T G C G T A A G T C C G T A A G T C A C G T
A T G C A C T G C T A G C A T G A G T C C A G T A T G C G T C A T C G A C A T G A T C G T C G A G T A C

PB0036.1_Irf6_1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GGCTCGACAC------
CTGATCGAAACCAAAGT
A C G T A C T G A C T G A G T C A C G T A G T C A C T G C G T A A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G T A C C G A T C A T G C T G A G A C T G A T C C T A G T C G A C G T A C G T A T A G C A G T C T C G A T G C A C G T A C A T G C G A T

TBX3/MA1566.1/Jaspar

Match Rank:9
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GGCTCGACAC---
---NTCACACCTN
A C T G A C T G A G T C A C G T A G T C A C T G C G T A A G T C C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A G C T G A C T T A G C T C G A A G T C C T G A A T G C A T G C G A C T G A T C

Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GGCTCGACAC
NHRTCACGACDN
A C G T A C G T A C T G A C T G A G T C A C G T A G T C A C T G C G T A A G T C C G T A A G T C
T C A G G C T A T C A G C A G T T G A C G T C A A G T C A T C G T G C A G T A C C A G T G A T C