Information for 2-ACAGAACAGAGT (Motif 2)

C G T A A G T C C G T A A C T G C G T A C G T A A G T C C G T A A C T G C G T A A C T G A C G T
Reverse Opposite:
C G T A A G T C A C G T A G T C A C G T A C T G A C G T A C G T A G T C A C G T A C T G A C G T
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets33.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0121.1_Foxj3_2/Jaspar

Match Rank:1
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----ACAGAACAGAGT-
AACACCAAAACAAAGGA
A C G T A C G T A C G T A C G T C G T A A G T C C G T A A C T G C G T A C G T A A G T C C G T A A C T G C G T A A C T G A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer

Match Rank:2
Score:0.59
Offset:3
Orientation:forward strand
Alignment:ACAGAACAGAGT---
---RHHCAGAGAGGB
C G T A A G T C C G T A A C T G C G T A C G T A A G T C C G T A A C T G C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C A G G T C A G C T A A G T C C G T A A T C G T C G A T C A G C G T A A C T G A C T G A C T G

SOX12/MA1561.1/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:ACAGAACAGAGT
ACCGAACAATG-
C G T A A G T C C G T A A C T G C G T A C G T A A G T C C G T A A C T G C G T A A C T G A C G T
G T C A G T A C G A T C C A T G T G C A T C G A A G T C C G T A T G C A G A C T T A C G A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:ACAGAACAGAGT
--GGAACAAAGR
C G T A A G T C C G T A A C T G C G T A C G T A A G T C C G T A A C T G C G T A A C T G A C G T
A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

SOX10/MA0442.2/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:ACAGAACAGAGT-
--AAAACAAAGAA
C G T A A G T C C G T A A C T G C G T A C G T A A G T C C G T A A C T G C G T A A C T G A C G T A C G T
A C G T A C G T C T G A C T G A T G C A G C T A A G T C C G T A G C T A G C T A A C T G T C G A T G C A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-ACAGAACAGAGT
CCAGGAACAG---
A C G T C G T A A G T C C G T A A C T G C G T A C G T A A G T C C G T A A C T G C G T A A C T G A C G T
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:ACAGAACAGAGT----
-AAGAACATWHTGTTC
C G T A A G T C C G T A A C T G C G T A C G T A A G T C C G T A A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T C G T A C T G A C T A G C G T A C G T A A G T C C G T A C A G T G C A T G T C A C G A T A C T G A C G T G C A T G A T C

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:ACAGAACAGAGT----
-VAGRACAKWCTGTYC
C G T A A G T C C G T A A C T G C G T A C G T A A G T C C G T A A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-ACAGAACAGAGT---
CANAGNNCAAAGTCCA
A C G T C G T A A G T C C G T A A C T G C G T A C G T A A G T C C G T A A C T G C G T A A C T G A C G T A C G T A C G T A C G T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:ACAGAACAGAGT----
-VAGRACAKNCTGTBC
C G T A A G T C C G T A A C T G C G T A C G T A A G T C C G T A A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C