Information for 8-AKKCGAATGG (Motif 15)

C G T A A C T G A C T G A G T C A C T G G T C A C G T A A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A A C G T A C G T A G T C A C T G G T A C G T A C A C G T
p-value:1e-7
log p-value:-1.841e+01
Information Content per bp:1.906
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.52%
Number of Background Sequences with motif10.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets97.1 +/- 33.4bp
Average Position of motif in Background105.2 +/- 52.6bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1/MA1608.1/Jaspar

Match Rank:1
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:AKKCGAATGG--
-NNCTAATGGNN
C G T A A C T G A C T G A G T C A C T G G T C A C G T A A C G T A C T G A C T G A C G T A C G T
A C G T A C G T T C A G G A T C C G A T C T G A C G T A G A C T C A T G C T A G T G C A G A C T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AKKCGAATGG-
WATGCAAATGAG
A C G T C G T A A C T G A C T G A G T C A C T G G T C A C G T A A C G T A C T G A C T G A C G T
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

PB0137.1_Irf3_2/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AKKCGAATGG-----
-GGAGAAAGGTGCGA
C G T A A C T G A C T G A G T C A C T G G T C A C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AKKCGAATGG
TTATGCAAAT--
A C G T A C G T C G T A A C T G A C T G A G T C A C T G G T C A C G T A A C G T A C T G A C T G
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T

NFYB/MA0502.2/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AKKCGAATGG-
NTGGCCAATGAG
A C G T C G T A A C T G A C T G A G T C A C T G G T C A C G T A A C G T A C T G A C T G A C G T
A G T C A C G T C T A G T C A G G A T C G T A C G T C A T C G A C G A T T A C G T C G A T A C G

POU5F1B/MA0792.1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AKKCGAATGG
TATGCAAAT--
A C G T C G T A A C T G A C T G A G T C A C T G G T C A C G T A A C G T A C T G A C T G
G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AKKCGAATGG
TATGCAAAT--
A C G T C G T A A C T G A C T G A G T C A C T G G T C A C G T A A C G T A C T G A C T G
G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:8
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:AKKCGAATGG-----
---TGATTGGCTANN
C G T A A C T G A C T G A G T C A C T G G T C A C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

PH0145.1_Pou2f3/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----AKKCGAATGG--
TTGTATGCAAATTAGA
A C G T A C G T A C G T A C G T C G T A A C T G A C T G A G T C A C T G G T C A C G T A A C G T A C T G A C T G A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AKKCGAATGG
ATATGCAAAT--
A C G T A C G T C G T A A C T G A C T G A G T C A C T G G T C A C G T A A C G T A C T G A C T G
G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T A C G T