Information for 2-ACTTGACATT (Motif 5)

G T C A G T A C A G C T C G A T A C T G C G T A A G T C G C T A A C G T C G A T
Reverse Opposite:
G C T A G T C A C G A T A C T G C G A T G T A C C G T A C T G A A C T G C A G T
p-value:1e-9
log p-value:-2.157e+01
Information Content per bp:1.749
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif6.24%
Number of Background Sequences with motif772.7
Percentage of Background Sequences with motif1.59%
Average Position of motif in Targets88.8 +/- 56.1bp
Average Position of motif in Background101.2 +/- 61.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:1
Score:0.76
Offset:2
Orientation:forward strand
Alignment:ACTTGACATT
--YTGWCADY
G T C A G T A C A G C T C G A T A C T G C G T A A G T C G C T A A C G T C G A T
A C G T A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:2
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:ACTTGACATT
ARNTGACA--
G T C A G T A C A G C T C G A T A C T G C G T A A G T C G C T A A C G T C G A T
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:3
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:ACTTGACATT-
--TTGACTTTT
G T C A G T A C A G C T C G A T A C T G C G T A A G T C G C T A A C G T C G A T A C G T
A C G T A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T

MEIS1/MA0498.2/Jaspar

Match Rank:4
Score:0.72
Offset:2
Orientation:forward strand
Alignment:ACTTGACATT
--TTGACAG-
G T C A G T A C A G C T C G A T A C T G C G T A A G T C G C T A A C G T C G A T
A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:5
Score:0.71
Offset:2
Orientation:forward strand
Alignment:ACTTGACATT
--TTGACAGG
G T C A G T A C A G C T C G A T A C T G C G T A A G T C G C T A A C G T C G A T
A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G

NFIC/MA0161.2/Jaspar

Match Rank:6
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-ACTTGACATT
TACTTGGCAGA
A C G T G T C A G T A C A G C T C G A T A C T G C G T A A G T C G C T A A C G T C G A T
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--ACTTGACATT
BTVATTWGCATA
A C G T A C G T G T C A G T A C A G C T C G A T A C T G C G T A A G T C G C T A A C G T C G A T
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

NR4A1/MA1112.2/Jaspar

Match Rank:8
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:ACTTGACATT---
-NNTGACCTTTNN
G T C A G T A C A G C T C G A T A C T G C G T A A G T C G C T A A C G T C G A T A C G T A C G T A C G T
A C G T G A C T A G C T G A C T T C A G T G C A G T A C G T A C A G C T G A C T G A C T C G T A G T C A

PH0113.1_Nkx2-4/Jaspar

Match Rank:9
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------ACTTGACATT
TAAGCCACTTGAAATT
A C G T A C G T A C G T A C G T A C G T A C G T G T C A G T A C A G C T C G A T A C T G C G T A A G T C G C T A A C G T C G A T
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:ACTTGACATT
NNTTGGCANN
G T C A G T A C A G C T C G A T A C T G C G T A A G T C G C T A A C G T C G A T
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C