Information for 2-GAAATAGCTATT (Motif 2)

A T C G C G T A C G T A C T G A G C A T C G T A C A T G G T A C G C A T C T G A A G C T C A G T
Reverse Opposite:
G T C A C T G A A G C T C G T A A C T G G T A C C G A T C G T A A G C T A C G T G C A T A T G C
p-value:1e-10
log p-value:-2.407e+01
Information Content per bp:1.767
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif3.33%
Number of Background Sequences with motif171.8
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets82.2 +/- 54.2bp
Average Position of motif in Background104.2 +/- 61.2bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GAAATAGCTATT
DCYAAAAATAGM----
A C G T A C G T A C G T A C G T A T C G C G T A C G T A C T G A G C A T C G T A C A T G G T A C G C A T C T G A A G C T C A G T
C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T A C G T A C G T A C G T

Tcf21/MA0832.1/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GAAATAGCTATT--
GCAACAGCTGTTGT
A T C G C G T A C G T A C T G A G C A T C G T A C A T G G T A C G C A T C T G A A G C T C A G T A C G T A C G T
T C A G G A T C C T G A G T C A A G T C G T C A A C T G A G T C A C G T A C T G A C G T G A C T T C A G A G C T

PRDM4/MA1647.1/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GAAATAGCTATT
NAGAAACAGNN---
A C G T A C G T A T C G C G T A C G T A C T G A G C A T C G T A C A T G G T A C G C A T C T G A A G C T C A G T
C G A T C G T A C A T G C G T A T C G A C G T A A G T C G C T A A T C G G T C A G A T C A C G T A C G T A C G T

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:4
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----GAAATAGCTATT
KCCAAAAATAGC----
A C G T A C G T A C G T A C G T A T C G C G T A C G T A C T G A G C A T C G T A C A T G G T A C G C A T C T G A A G C T C A G T
A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C A C G T A C G T A C G T A C G T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GAAATAGCTATT
CCAAAAATAG-----
A C G T A C G T A C G T A T C G C G T A C G T A C T G A G C A T C G T A C A T G G T A C G C A T C T G A A G C T C A G T
G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T A C G T A C G T A C G T A C G T

MEF2C/MA0497.1/Jaspar

Match Rank:6
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------GAAATAGCTATT
ATGCTAAAAATAGAA---
A C G T A C G T A C G T A C G T A C G T A C G T A T C G C G T A C G T A C T G A G C A T C G T A C A T G G T A C G C A T C T G A A G C T C A G T
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A A C G T A C G T A C G T

MSC/MA0665.1/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GAAATAGCTATT
--AACAGCTGTT
A T C G C G T A C G T A C T G A G C A T C G T A C A T G G T A C G C A T C T G A A G C T C A G T
A C G T A C G T T C G A T C G A G T A C C G T A A T C G A T G C A C G T T A C G A C G T G A C T

PB0135.1_Hoxa3_2/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GAAATAGCTATT----
--AAAAACCATTAAGG
A T C G C G T A C G T A C T G A G C A T C G T A C A T G G T A C G C A T C T G A A G C T C A G T A C G T A C G T A C G T A C G T
A C G T A C G T T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

Stat2/MA1623.1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GAAATAGCTATT
AGAAACAGAAACT
A C G T A T C G C G T A C G T A C T G A G C A T C G T A C A T G G T A C G C A T C T G A A G C T C A G T
C T G A C T A G C T G A G C T A T C G A T A G C G C T A C T A G T C G A C T G A T C G A T A G C G C A T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:10
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GAAATAGCTATT
GCTAAAAATAGC----
A C G T A C G T A C G T A C G T A T C G C G T A C G T A C T G A G C A T C G T A C A T G G T A C G C A T C T G A A G C T C A G T
A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C A C G T A C G T A C G T A C G T