Information for 3-TRMACAAKGCCT (Motif 3)

A C G T C T G A T G A C T C G A T A G C G T C A C G T A A C T G A T C G A G T C A G T C A C G T
Reverse Opposite:
C G T A C T A G C T A G A T G C G T A C C G A T A C G T A C T G A C G T A C T G G A C T T C G A
p-value:1e-4
log p-value:-9.363e+00
Information Content per bp:1.665
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif44.44%
Number of Background Sequences with motif2577.5
Percentage of Background Sequences with motif2.96%
Average Position of motif in Targets116.2 +/- 38.3bp
Average Position of motif in Background101.1 +/- 76.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.75
Offset:4
Orientation:reverse strand
Alignment:TRMACAAKGCCT
----CNAGGCCT
A C G T C T G A T G A C T C G A T A G C G T C A C G T A A C T G A T C G A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:2
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:TRMACAAKGCCT
----CTAGGCCT
A C G T C T G A T G A C T C G A T A G C G T C A C G T A A C T G A T C G A G T C A G T C A C G T
A C G T A C G T A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T

Zfx/MA0146.2/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TRMACAAKGCCT-
GGGGCCGAGGCCTG
A C G T A C G T C T G A T G A C T C G A T A G C G T C A C G T A A C T G A T C G A G T C A G T C A C G T A C G T
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G

SOX18/MA1563.1/Jaspar

Match Rank:4
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TRMACAAKGCCT
--CACAATGC--
A C G T C T G A T G A C T C G A T A G C G T C A C G T A A C T G A T C G A G T C A G T C A C G T
A C G T A C G T T A G C C T G A A G T C T C G A T G C A A G C T C T A G T A G C A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TRMACAAKGCCT-
--NNACTTGCCTT
A C G T C T G A T G A C T C G A T A G C G T C A C G T A A C T G A T C G A G T C A G T C A C G T A C G T
A C G T A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

SOX13/MA1120.1/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TRMACAAKGCCT
-AAACAATGGCA
A C G T C T G A T G A C T C G A T A G C G T C A C G T A A C T G A T C G A G T C A G T C A C G T
A C G T C T G A T C G A C T G A A G T C G C T A C T G A G C A T C T A G T C A G T G A C G C T A

PB0200.1_Zfp187_2/Jaspar

Match Rank:7
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---TRMACAAKGCCT-
NNAGGGACAAGGGCNC
A C G T A C G T A C G T A C G T C T G A T G A C T C G A T A G C G T C A C G T A A C T G A T C G A G T C A G T C A C G T A C G T
A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:8
Score:0.55
Offset:4
Orientation:forward strand
Alignment:TRMACAAKGCCT--
----CAAGGHCANV
A C G T C T G A T G A C T C G A T A G C G T C A C G T A A C T G A T C G A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TRMACAAKGCCT
VRRACAAWGG--
A C G T C T G A T G A C T C G A T A G C G T C A C G T A A C T G A T C G A G T C A G T C A C G T
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T

Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer

Match Rank:10
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:TRMACAAKGCCT----
------KGGCCYCWTD
A C G T C T G A T G A C T C G A T A G C G T C A C G T A A C T G A T C G A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G C A T G T A C G G T A C A T G C G A T C A T G C G C T A A G C T C T G A