Information for 23-GTGCCCTAGT (Motif 39)

A C T G A C G T A C T G A G T C A G T C A G T C A G C T C T G A T C A G A C G T
Reverse Opposite:
C G T A A G T C A G C T C T G A A C T G A C T G A C T G A G T C C G T A G T A C
p-value:1e-3
log p-value:-7.339e+00
Information Content per bp:1.873
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif60.0
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets109.2 +/- 45.8bp
Average Position of motif in Background106.6 +/- 60.8bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0133.1_Hic1_2/Jaspar

Match Rank:1
Score:0.80
Offset:-4
Orientation:forward strand
Alignment:----GTGCCCTAGT--
GGGTGTGCCCAAAAGG
A C G T A C G T A C G T A C G T A C T G A C G T A C T G A G T C A G T C A G T C A G C T C T G A T C A G A C G T A C G T A C G T
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:2
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:GTGCCCTAGT--
BTGACCTAVTTW
A C T G A C G T A C T G A G T C A G T C A G T C A G C T C T G A T C A G A C G T A C G T A C G T
A G T C A C G T T C A G T C G A A G T C A G T C A G C T C T G A T C A G C G A T G C A T G C A T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:3
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:GTGCCCTAGT-
-TGACCTARTT
A C T G A C G T A C T G A G T C A G T C A G T C A G C T C T G A T C A G A C G T A C G T
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:GTGCCCTAGT-
-TGACCTARTT
A C T G A C G T A C T G A G T C A G T C A G T C A G C T C T G A T C A G A C G T A C G T
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:5
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---GTGCCCTAGT--
NNHYTGACCTAGWTT
A C G T A C G T A C G T A C T G A C G T A C T G A G T C A G T C A G T C A G C T C T G A T C A G A C G T A C G T A C G T
A C G T G A T C G A C T G A T C A C G T A C T G T C G A A G T C A G T C A G C T C T G A T C A G C G A T C G A T G C A T

RORC/MA1151.1/Jaspar

Match Rank:6
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:GTGCCCTAGT---
-TGACCTANTTAN
A C T G A C G T A C T G A G T C A G T C A G T C A G C T C T G A T C A G A C G T A C G T A C G T A C G T
A C G T G A C T T C A G T G C A G A T C G T A C A G C T T G C A T A G C G C A T C G A T G C T A G A C T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:7
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GTGCCCTAGT----
TTGACCTANTTATN
A C T G A C G T A C T G A G T C A G T C A G T C A G C T C T G A T C A G A C G T A C G T A C G T A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RORB/MA1150.1/Jaspar

Match Rank:8
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GTGCCCTAGT-
NTGACCTAATT
A C T G A C G T A C T G A G T C A G T C A G T C A G C T C T G A T C A G A C G T A C G T
C T A G G A C T C T A G T C G A G A T C T G A C G A C T T G C A G C T A C G A T G C A T

HIC2/MA0738.1/Jaspar

Match Rank:9
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GTGCCCTAGT
ATGCCCACC-
A C T G A C G T A C T G A G T C A G T C A G T C A G C T C T G A T C A G A C G T
T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T

PB0200.1_Zfp187_2/Jaspar

Match Rank:10
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GTGCCCTAGT------
GAGCCCTTGTCCCTAA
A C T G A C G T A C T G A G T C A G T C A G T C A G C T C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C T G C T G A C T A G G T A C A G T C A G T C G A C T A G C T T C A G G A C T G A T C A G T C G T A C G A C T G C A T T C A G