Information for 9-TCTTGGCTGCAT (Motif 9)

A C G T A G T C A C G T A C G T A C T G A C T G A G T C A C G T A C T G A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G A G T C C G T A A C T G A G T C A G T C C G T A C G T A A C T G C G T A
p-value:1e-4
log p-value:-1.099e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets129.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.2/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TCTTGGCTGCAT
TACTTGGCAGA--
A C G T A C G T A G T C A C G T A C G T A C T G A C T G A G T C A C G T A C T G A G T C C G T A A C G T
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TCTTGGCTGCAT
--TWGTCTGV--
A C G T A G T C A C G T A C G T A C T G A C T G A G T C A C G T A C T G A G T C C G T A A C G T
A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T

ZNF136/MA1588.1/Jaspar

Match Rank:3
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TCTTGGCTGCAT
GAATTCTTGGTTGAC-
A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C T G A G T C A C G T A C T G A G T C C G T A A C G T
T C A G C G T A T C G A C G A T A G C T G A T C A G C T C A G T C T A G C T A G G A C T C A G T C T A G C T G A G T A C A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TCTTGGCTGCAT
-NTTGGCANN--
A C G T A G T C A C G T A C G T A C T G A C T G A G T C A C G T A C T G A G T C C G T A A C G T
A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TCTTGGCTGCAT
NNACTTGCCTT---
A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C T G A G T C A C G T A C T G A G T C C G T A A C G T
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TCTTGGCTGCAT
NNTTGGCANN--
A C G T A G T C A C G T A C G T A C T G A C T G A G T C A C G T A C T G A G T C C G T A A C G T
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TCTTGGCTGCAT---
NNNNTTGGCGCCGANNN
A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C T G A G T C A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T
T A C G T A G C A C G T G A C T A C G T G C A T C T A G A T C G G T A C A C T G A T G C A G T C C T A G G C T A C T A G A T G C C A G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:8
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----TCTTGGCTGCAT
GTCATGCHTGRCTGS--
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C T G A G T C A C G T A C T G A G T C C G T A A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T

PB0112.1_E2F2_2/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TCTTGGCTGCAT---
NNNNTTGGCGCCGANNN
A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C T G A G T C A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T
T A G C T G A C A G C T A G C T C A G T G A C T C T A G A T C G G T A C A C T G T A G C G A T C C T A G G C T A T C G A A T C G C A T G

E2F4/MA0470.2/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TCTTGGCTGCAT--
TTTTGGCGCCATTT
A C G T A G T C A C G T A C G T A C T G A C T G A G T C A C G T A C T G A G T C C G T A A C G T A C G T A C G T
C G A T C G A T C A G T C A G T T A C G T A C G G T A C C A T G A T G C A T G C G T C A G C A T G C A T G C A T