Information for 5-TGCATSTTAATK (Motif 6)

A C G T A C T G T A G C G T C A A C G T A T C G A C G T A C G T G T C A C G T A G A C T A C T G
Reverse Opposite:
G T A C C G T A C G A T A C G T G T C A G T C A A T G C C G T A C A G T A C T G A G T C G T C A
p-value:1e-5
log p-value:-1.179e+01
Information Content per bp:1.690
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif45.45%
Number of Background Sequences with motif2086.6
Percentage of Background Sequences with motif2.85%
Average Position of motif in Targets92.2 +/- 64.3bp
Average Position of motif in Background100.1 +/- 67.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TGCATSTTAATK
CTCATGAATATTCAT-
A C G T A C G T A C G T A C G T A C G T A C T G T A G C G T C A A C G T A T C G A C G T A C G T G T C A C G T A G A C T A C T G
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T A C G T

MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:2
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TGCATSTTAATK----
-GACTTTTAWTTTGAA
A C G T A C T G T A G C G T C A A C G T A T C G A C G T A C G T G T C A C G T A G A C T A C T G A C G T A C G T A C G T A C G T
A C G T C T A G C T G A A G T C G A C T G A C T G A C T A C G T C T G A G C A T C A G T G A C T C G A T T C A G C T G A G T C A

Arid3b/MA0601.1/Jaspar

Match Rank:3
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TGCATSTTAATK--
---ATATTAATTAA
A C G T A C T G T A G C G T C A A C G T A T C G A C G T A C G T G T C A C G T A G A C T A C T G A C G T A C G T
A C G T A C G T A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TGCATSTTAATK
ATTTGCATAACAAAG
A C G T A C G T A C G T A C G T A C T G T A G C G T C A A C G T A T C G A C G T A C G T G T C A C G T A G A C T A C T G
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

PH0153.1_Prop1/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TGCATSTTAATK------
-GNNTNTTAATTAATNCN
A C G T A C T G T A G C G T C A A C G T A T C G A C G T A C G T G T C A C G T A G A C T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T A G G A C T G C A T G C A T G T A C G A C T G A C T C G T A C G T A G A C T A C G T C T G A C T G A A G C T A C G T A G T C A C T G

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TGCATSTTAATK
-GHATATKCAT-
A C G T A C T G T A G C G T C A A C G T A T C G A C G T A C G T G T C A C G T A G A C T A C T G
A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:7
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------TGCATSTTAATK
NTTNTATGAATGTGNNC-
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G T A G C G T C A A C G T A T C G A C G T A C G T G T C A C G T A G A C T A C T G
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:8
Score:0.57
Offset:5
Orientation:forward strand
Alignment:TGCATSTTAATK-
-----GKTAATGR
A C G T A C T G T A G C G T C A A C G T A T C G A C G T A C G T G T C A C G T A G A C T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A

NKX6-1/MA0674.1/Jaspar

Match Rank:9
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:TGCATSTTAATK--
------TTAATTAN
A C G T A C T G T A G C G T C A A C G T A T C G A C G T A C G T G T C A C G T A G A C T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A G C T C G T A C G T A C A G T C A G T C T G A A T G C

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---TGCATSTTAATK
ATTTGCATAACAATG
A C G T A C G T A C G T A C G T A C T G T A G C G T C A A C G T A T C G A C G T A C G T G T C A C G T A G A C T A C T G
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G