Information for 1-AGCCCAACAAAA (Motif 1)

C G T A A C T G A G T C A G T C G T A C C G T A C G T A G A T C G T C A C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T G A C T A C G T C A T G A C G T A C G T A C T G A C T G A C T G G T A C A C G T
p-value:1e-9
log p-value:-2.182e+01
Information Content per bp:1.833
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif46.6
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets124.5 +/- 49.1bp
Average Position of motif in Background98.8 +/- 74.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF449/MA1656.1/Jaspar

Match Rank:1
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---AGCCCAACAAAA
CCAAGCCCAACCAG-
A C G T A C G T A C G T C G T A A C T G A G T C A G T C G T A C C G T A C G T A G A T C G T C A C G T A C G T A C G T A
G T A C T G A C T G C A G C T A C T A G T A G C G T A C G T A C G C T A C T G A T G A C G T A C G T C A T A C G A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:forward strand
Alignment:AGCCCAACAAAA----
AACCCAATAAAATTCG
C G T A A C T G A G T C A G T C G T A C C G T A C G T A G A T C G T C A C G T A C G T A C G T A A C G T A C G T A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

HOXA13/MA0650.2/Jaspar

Match Rank:3
Score:0.70
Offset:2
Orientation:forward strand
Alignment:AGCCCAACAAAA-
--CCCAATAAAAC
C G T A A C T G A G T C A G T C G T A C C G T A C G T A G A T C G T C A C G T A C G T A C G T A A C G T
A C G T A C G T T G A C T A G C A G T C G T C A C G T A A C G T C T G A C T G A C G T A G T C A G T A C

PB0186.1_Tcf3_2/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AGCCCAACAAAA---
AGCCGAAAAAAAAAT
C G T A A C T G A G T C A G T C G T A C C G T A C G T A G A T C G T C A C G T A C G T A C G T A A C G T A C G T A C G T
C T G A T A C G A T G C T A G C A C T G C G T A C T G A G C T A G C T A G C T A T G C A G C T A T C G A G C T A G C A T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:5
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:AGCCCAACAAAA
--CCYMATAAAA
C G T A A C T G A G T C A G T C G T A C C G T A C G T A G A T C G T C A C G T A C G T A C G T A
A C G T A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

HOXB13/MA0901.2/Jaspar

Match Rank:6
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AGCCCAACAAAA---
-AACCAATAAAATTT
C G T A A C T G A G T C A G T C G T A C C G T A C G T A G A T C G T C A C G T A C G T A C G T A A C G T A C G T A C G T
A C G T C G T A C G T A G T A C G A T C G C T A C G T A A C G T C G T A G C T A G C T A G C T A G C A T G C A T G C A T

PH0078.1_Hoxd13/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGCCCAACAAAA----
CTACCAATAAAATTCT
C G T A A C T G A G T C A G T C G T A C C G T A C G T A G A T C G T C A C G T A C G T A C G T A A C G T A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

HOXD13/MA0909.2/Jaspar

Match Rank:8
Score:0.64
Offset:2
Orientation:forward strand
Alignment:AGCCCAACAAAA-
--CCCAATAAAAC
C G T A A C T G A G T C A G T C G T A C C G T A C G T A G A T C G T C A C G T A C G T A C G T A A C G T
A C G T A C G T T A G C T A G C A G T C G T C A C T G A C G A T C G T A C T G A G T C A T G C A T G A C

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGCCCAACAAAA----
TGCCAAAATAAACANN
C G T A A C T G A G T C A G T C G T A C C G T A C G T A G A T C G T C A C G T A C G T A C G T A A C G T A C G T A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

PB0121.1_Foxj3_2/Jaspar

Match Rank:10
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AGCCCAACAAAA--
AACACCAAAACAAAGGA
A C G T A C G T A C G T C G T A A C T G A G T C A G T C G T A C C G T A C G T A G A T C G T C A C G T A C G T A C G T A A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A