Information for 1-GTAATAAGAT (Motif 5)

C T A G A C G T C G T A C G T A A C G T C T G A C G T A A C T G G T C A A G C T
Reverse Opposite:
T C G A C A G T G T A C A C G T A G C T C G T A A C G T C G A T C G T A A G T C
p-value:1e-11
log p-value:-2.669e+01
Information Content per bp:1.847
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif2.63%
Number of Background Sequences with motif198.1
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets99.2 +/- 45.0bp
Average Position of motif in Background93.9 +/- 57.6bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU6F2/MA0793.1/Jaspar

Match Rank:1
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:GTAATAAGAT
NTAATGAGCT
C T A G A C G T C G T A C G T A A C G T C T G A C G T A A C T G G T C A A G C T
C G T A C G A T T G C A C T G A C A G T C A T G G T C A C T A G A T G C G A C T

POU6F1(var.2)/MA1549.1/Jaspar

Match Rank:2
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GTAATAAGAT
ATAATGAGGT
C T A G A C G T C G T A C G T A A C G T C T G A C G T A A C T G G T C A A G C T
C T G A G A C T T C G A C G T A A C G T A C T G G C T A A C T G T A C G C G A T

PH0046.1_Hoxa10/Jaspar

Match Rank:3
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---GTAATAAGAT---
TAGGTAATAAAATTCA
A C G T A C G T A C G T C T A G A C G T C G T A C G T A A C G T C T G A C G T A A C T G G T C A A G C T A C G T A C G T A C G T
C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A

HOXD3/MA0912.2/Jaspar

Match Rank:4
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:GTAATAAGAT
GTAATTAG--
C T A G A C G T C G T A C G T A A C G T C T G A C G T A A C T G G T C A A G C T
T A C G A G C T G T C A C G T A A C G T A C G T C T G A T C A G A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:5
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GTAATAAGAT
GTCATAAAAN
C T A G A C G T C G T A C G T A A C G T C T G A C G T A A C T G G T C A A G C T
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

PH0013.1_Cdx2/Jaspar

Match Rank:6
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----GTAATAAGAT--
AAAGGTAATAAAATTT
A C G T A C G T A C G T A C G T C T A G A C G T C G T A C G T A A C G T C T G A C G T A A C T G G T C A A G C T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

PH0151.1_Pou6f1_1/Jaspar

Match Rank:7
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----GTAATAAGAT---
GACGATAATGAGCTTGC
A C G T A C G T A C G T A C G T C T A G A C G T C G T A C G T A A C G T C T G A C G T A A C T G G T C A A G C T A C G T A C G T A C G T
T A C G G C T A T G A C T A C G G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G A T C G G C A T C A G T C T A G G T A C

LBX1/MA0618.1/Jaspar

Match Rank:8
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GTAATAAGAT
TTAATTAG--
C T A G A C G T C G T A C G T A A C G T C T G A C G T A A C T G G T C A A G C T
C G A T A G C T C G T A C G T A A G C T C G A T C T G A A T C G A C G T A C G T

PH0012.1_Cdx1/Jaspar

Match Rank:9
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----GTAATAAGAT--
TAAGGTAATAAAATTA
A C G T A C G T A C G T A C G T C T A G A C G T C G T A C G T A A C G T C T G A C G T A A C T G G T C A A G C T A C G T A C G T
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

HOXA10/MA0899.1/Jaspar

Match Rank:10
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GTAATAAGAT
GGTAATAAAAA
A C G T C T A G A C G T C G T A C G T A A C G T C T G A C G T A A C T G G T C A A G C T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A