Information for 19-TCCTAATAAG (Motif 35)

A C G T A G T C A G T C A C G T C G T A C G T A A C G T C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T C G T A A C G T A C G T C G T A A C T G A C T G C G T A
p-value:1e-2
log p-value:-6.750e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif11.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets141.0 +/- 0.0bp
Average Position of motif in Background88.1 +/- 86.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer

Match Rank:1
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:TCCTAATAAG--
--CTAATTAGCN
A C G T A G T C A G T C A C G T C G T A C G T A A C G T C G T A C G T A A C T G A C G T A C G T
A C G T A C G T A G T C G A C T T G C A C T G A G A C T A C G T C T G A T C A G A T G C T A C G

PH0089.1_Isx/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TCCTAATAAG----
ACTCCTAATTAGTCGT
A C G T A C G T A C G T A G T C A G T C A C G T C G T A C G T A A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T
G C T A T G A C A G C T T G A C G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C G T A G T C T A C G C G A T

PAX4/MA0068.2/Jaspar

Match Rank:3
Score:0.68
Offset:2
Orientation:forward strand
Alignment:TCCTAATAAG
--CTAATTAG
A C G T A G T C A G T C A C G T C G T A C G T A A C G T C G T A C G T A A C T G
A C G T A C G T A G T C C A G T G C T A C G T A A C G T G C A T G T C A T C A G

PH0098.1_Lhx8/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TCCTAATAAG-----
ACCCCTAATTAGCGGTG
A C G T A C G T A C G T A G T C A G T C A C G T C G T A C G T A A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
G C T A T G A C T G A C T G A C T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A G T C C A T G C A T G A C G T C T A G

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:5
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TCCTAATAAG---
-CCATATATGGNA
A C G T A G T C A G T C A C G T C G T A C G T A A C G T C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A

NOTO/MA0710.1/Jaspar

Match Rank:6
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TCCTAATAAG-
-NNTAATTAGN
A C G T A G T C A G T C A C G T C G T A C G T A A C G T C G T A C G T A A C T G A C G T
A C G T T A C G A G T C G A C T G T C A C G T A A C G T C A G T C G T A C T A G A T G C

LHX6/MA0658.1/Jaspar

Match Rank:7
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TCCTAATAAG-
-ACTAATTAGC
A C G T A G T C A G T C A C G T C G T A C G T A A C G T C G T A C G T A A C T G A C G T
A C G T T C G A A G T C A G C T T C G A G T C A A G C T A G C T C T G A T C A G A G T C

HOXA2/MA0900.2/Jaspar

Match Rank:8
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:TCCTAATAAG
--NTAATTAN
A C G T A G T C A G T C A C G T C G T A C G T A A C G T C G T A C G T A A C T G
A C G T A C G T A T G C A G C T C G T A C G T A A C G T A C G T C T G A A T G C

LBX1/MA0618.1/Jaspar

Match Rank:9
Score:0.66
Offset:2
Orientation:forward strand
Alignment:TCCTAATAAG
--TTAATTAG
A C G T A G T C A G T C A C G T C G T A C G T A A C G T C G T A C G T A A C T G
A C G T A C G T C G A T A G C T C G T A C G T A A G C T C G A T C T G A A T C G

EVX2/MA0888.1/Jaspar

Match Rank:10
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TCCTAATAAG-
-NNTAATTANN
A C G T A G T C A G T C A C G T C G T A C G T A A C G T C G T A C G T A A C T G A C G T
A C G T T A C G A T G C G A C T T C G A T G C A A G C T A C G T C T G A A T G C A T G C