Information for 4-VTTTGCHHTTGC (Motif 5)

T A G C A G C T G A C T A C G T A T C G A G T C G A T C G C A T C G A T A C G T A T C G A G T C
Reverse Opposite:
A C T G A T G C G T C A C G T A C G T A C A T G A C T G A T G C C G T A C T G A C T G A A T C G
p-value:1e-4
log p-value:-9.874e+00
Information Content per bp:1.693
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif55.56%
Number of Background Sequences with motif4491.2
Percentage of Background Sequences with motif5.48%
Average Position of motif in Targets53.4 +/- 26.2bp
Average Position of motif in Background98.5 +/- 75.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:VTTTGCHHTTGC
ATTTGCATAT--
T A G C A G C T G A C T A C G T A T C G A G T C G A T C G C A T C G A T A C G T A T C G A G T C
G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T A C G T A C G T

POU2F3/MA0627.2/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--VTTTGCHHTTGC
NNATTTGCATATN-
A C G T A C G T T A G C A G C T G A C T A C G T A T C G A G T C G A T C G C A T C G A T A C G T A T C G A G T C
C G A T G C A T G C T A G C A T G C A T G C A T T C A G G T A C G T C A G C A T C G T A G C A T C G A T A C G T

POU5F1/MA1115.1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-VTTTGCHHTTGC
NATTTGCATNN--
A C G T T A G C A G C T G A C T A C G T A T C G A G T C G A T C G C A T C G A T A C G T A T C G A G T C
G T C A C G T A C G A T G A C T C G A T T C A G G A T C C T G A A G C T C G T A G C A T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---VTTTGCHHTTGC
TTCATTTGCATAT--
A C G T A C G T A C G T T A G C A G C T G A C T A C G T A T C G A G T C G A T C G C A T C G A T A C G T A T C G A G T C
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T A C G T A C G T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:VTTTGCHHTTGC-
---TKCTGTTCCA
T A G C A G C T G A C T A C G T A T C G A G T C G A T C G C A T C G A T A C G T A T C G A G T C A C G T
A C G T A C G T A C G T A C G T C A G T T A G C A G C T T A C G C G A T A C G T A G T C G T A C G T C A

PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:VTTTGCHHTTGC
ASTTTCACTTCC
T A G C A G C T G A C T A C G T A T C G A G T C G A T C G C A T C G A T A C G T A T C G A G T C
C T G A A T G C G C A T G A C T G A C T A G T C G C T A A T G C G C A T C G A T A G T C G A T C

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---VTTTGCHHTTGC-
NNTGTTTATTTTGGCA
A C G T A C G T A C G T T A G C A G C T G A C T A C G T A T C G A G T C G A T C G C A T C G A T A C G T A T C G A G T C A C G T
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A

IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:VTTTGCHHTTGC
ASTTTCASTTYC
T A G C A G C T G A C T A C G T A T C G A G T C G A T C G C A T C G A T A C G T A T C G A G T C
C T G A A T G C G C A T G A C T A G C T A G T C C T G A A T G C G C A T C G A T A G T C A G T C

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:VTTTGCHHTTGC
ATTTGCATAA--
T A G C A G C T G A C T A C G T A T C G A G T C G A T C G C A T C G A T A C G T A T C G A G T C
C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:VTTTGCHHTTGC----
--TTGCCATGGCAACN
T A G C A G C T G A C T A C G T A T C G A G T C G A T C G C A T C G A T A C G T A T C G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C