Information for 6-GAGTTATGCC (Motif 28)

A C T G C G T A A C T G A C G T A C G T C G T A A C G T A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C C G T A A C G T C G T A C G T A A G T C A C G T A G T C
p-value:1e-3
log p-value:-8.297e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif26.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.0 +/- 0.0bp
Average Position of motif in Background101.0 +/- 11.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GAGTTATGCC-
TGATTTATGGCC
A C G T A C T G C G T A A C T G A C G T A C G T C G T A A C G T A C T G A G T C A G T C A C G T
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:2
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GAGTTATGCC-
AAATGATTTATGGCT
A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C G T C G T A A C G T A C T G A G T C A G T C A C G T
C T G A C G T A C G T A C G A T C T A G C G T A C G A T C G A T C A G T T C G A A G C T C A T G C T A G A G T C G A C T

PBX2/MA1113.2/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GAGTTATGCC
NNTGATTTATGNN
A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C G T C G T A A C G T A C T G A G T C A G T C
C G T A C T G A C G A T C T A G C G T A C G A T C G A T C A G T T C G A G A C T C A T G C T G A A G T C

MEIS1(var.2)/MA1639.1/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GAGTTATGCC
NNTGATTGATGNN
A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C G T C G T A A C G T A C T G A G T C A G T C
C G T A C G T A C G A T C A T G C G T A C G A T C A G T C A T G G T C A G A C T C T A G C T G A G A T C

HLF/MA0043.3/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GAGTTATGCC----
TTGTTATGCAACAA
A C T G C G T A A C T G A C G T A C G T C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T
C G A T C A G T T C A G G C A T C A G T C T G A A G C T C T A G G A T C G T C A C T G A A G T C G T C A C G T A

HIC2/MA0738.1/Jaspar

Match Rank:6
Score:0.60
Offset:5
Orientation:forward strand
Alignment:GAGTTATGCC----
-----ATGCCCACC
A C T G C G T A A C T G A C G T A C G T C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

NFE2/MA0841.1/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GAGTTATGCC
GATGAGTCATN--
A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C G T C G T A A C G T A C T G A G T C A G T C
T A C G T C G A A C G T C T A G T C G A A T C G C A G T G T A C C T G A A G C T A C T G A C G T A C G T

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GAGTTATGCC
RTGATTKATRGN
A C G T A C G T A C T G C G T A A C T G A C G T A C G T C G T A A C G T A C T G A G T C A G T C
C T G A C G A T C T A G C G T A A G C T C G A T C A G T C T G A G A C T C T A G C T A G A T G C

JDP2/MA0655.1/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GAGTTATGCC
ATGAGTCAT---
A C G T A C G T A C T G C G T A A C T G A C G T A C G T C G T A A C G T A C T G A G T C A G T C
C T G A C G A T C A T G G C T A A T C G G C A T T G A C C T G A A G C T A C G T A C G T A C G T

CDX1/MA0878.2/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GAGTTATGCC-
GTTTTATGGCC
A C T G C G T A A C T G A C G T A C G T C G T A A C G T A C T G A G T C A G T C A C G T
T C A G C A G T A G C T A C G T A G C T C G T A A C G T A C T G T C A G G A T C G T A C