Information for 2-TTTCAATTAGGW (Motif 2)

C A G T A C G T A C G T T G A C C G T A C G T A C G A T A G C T C T G A A C T G A T C G C G T A
Reverse Opposite:
C G A T A T G C G T A C A G C T C T G A C G T A A C G T A C G T A C T G C G T A C G T A G C T A
p-value:1e-7
log p-value:-1.702e+01
Information Content per bp:1.761
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif35.71%
Number of Background Sequences with motif377.5
Percentage of Background Sequences with motif0.74%
Average Position of motif in Targets75.6 +/- 42.3bp
Average Position of motif in Background105.8 +/- 70.6bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-TTTCAATTAGGW
ATTTGAATT----
A C G T C A G T A C G T A C G T T G A C C G T A C G T A C G A T A G C T C T G A A C T G A T C G C G T A
C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T A C G T A C G T

ARGFX/MA1463.1/Jaspar

Match Rank:2
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:TTTCAATTAGGW
-TTTAATTAGN-
C A G T A C G T A C G T T G A C C G T A C G T A C G A T A G C T C T G A A C T G A T C G C G T A
A C G T C A G T G A C T G A C T C T G A C G T A A C G T C A G T C T G A C T A G G T C A A C G T

PB0068.1_Sox1_1/Jaspar

Match Rank:3
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----TTTCAATTAGGW
NNNTATTGAATTGNNN
A C G T A C G T A C G T A C G T C A G T A C G T A C G T T G A C C G T A C G T A C G A T A G C T C T G A A C T G A T C G C G T A
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

TLX2/MA1577.1/Jaspar

Match Rank:4
Score:0.69
Offset:2
Orientation:forward strand
Alignment:TTTCAATTAGGW
--CTAATTAG--
C A G T A C G T A C G T T G A C C G T A C G T A C G A T A G C T C T G A A C T G A T C G C G T A
A C G T A C G T A G T C G A C T C T G A C G T A A C G T A C G T C G T A T C A G A C G T A C G T

Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer

Match Rank:5
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---TTTCAATTAGGW
TTAATTNAATTA---
A C G T A C G T A C G T C A G T A C G T A C G T T G A C C G T A C G T A C G A T A G C T C T G A A C T G A T C G C G T A
C G A T A C G T C G T A C G T A A C G T A G C T T G C A C T G A C G T A A C G T A C G T C G T A A C G T A C G T A C G T

ALX3/MA0634.1/Jaspar

Match Rank:6
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TTTCAATTAGGW
-TCTAATTAAA-
C A G T A C G T A C G T T G A C C G T A C G T A C G A T A G C T C T G A A C T G A T C G C G T A
A C G T G A C T A G T C G A C T C T G A G T C A G C A T G A C T G C T A T C G A T G C A A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TTTCAATTAGGW
TTTGAAACCG--
C A G T A C G T A C G T T G A C C G T A C G T A C G A T A G C T C T G A A C T G A T C G C G T A
A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G A C G T A C G T

MIXL1/MA0662.1/Jaspar

Match Rank:8
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TTTCAATTAGGW
-TCTAATTAAC-
C A G T A C G T A C G T T G A C C G T A C G T A C G A T A G C T C T G A A C T G A T C G C G T A
A C G T C G A T A G T C G A C T T C G A G C T A A G C T A G C T G C T A T C G A T G A C A C G T

LMX1B/MA0703.2/Jaspar

Match Rank:9
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TTTCAATTAGGW
ATTTTAATTAA--
A C G T C A G T A C G T A C G T T G A C C G T A C G T A C G A T A G C T C T G A A C T G A T C G C G T A
C T G A C G A T C G A T A G C T A C G T C G T A C G T A A C G T A C G T G T C A G T C A A C G T A C G T

DRGX/MA1481.1/Jaspar

Match Rank:10
Score:0.66
Offset:2
Orientation:forward strand
Alignment:TTTCAATTAGGW
--CTAATTAC--
C A G T A C G T A C G T T G A C C G T A C G T A C G A T A G C T C T G A A C T G A T C G C G T A
A C G T A C G T A G T C A G C T T C G A C G T A A C G T A G C T C T G A T A G C A C G T A C G T