Information for 9-TGARSWKRCC (Motif 19)

C A G T A T C G C G T A C T A G A T C G C G T A C A G T C T A G G T A C G A T C
Reverse Opposite:
C T A G C A T G G A T C G T C A G C A T T A G C G A T C C G A T T A G C G T C A
p-value:1e-6
log p-value:-1.405e+01
Information Content per bp:1.532
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.94%
Number of Background Sequences with motif206.2
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets83.1 +/- 48.3bp
Average Position of motif in Background101.6 +/- 56.5bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SIX1/MA1118.1/Jaspar

Match Rank:1
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TGARSWKRCC
TATCAGGTTAC-
A C G T A C G T C A G T A T C G C G T A C T A G A T C G C G T A C A G T C T A G G T A C G A T C
C A G T T G C A G C A T G A T C C G T A C A T G C T A G G C A T C G A T G C T A G T A C A C G T

RUNX3/MA0684.2/Jaspar

Match Rank:2
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---TGARSWKRCC
NNTTGAGGTTNN-
A C G T A C G T A C G T C A G T A T C G C G T A C T A G A T C G C G T A C A G T C T A G G T A C G A T C
C T G A C G A T G A C T C G A T A C T G G C T A A C T G C T A G G A C T A G C T C G A T G C A T A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:3
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---TGARSWKRCC
GKVTCADRTTWC-
A C G T A C G T A C G T C A G T A T C G C G T A C T A G A T C G C G T A C A G T C T A G G T A C G A T C
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--TGARSWKRCC---
GGTCANNGTGACCTN
A C G T A C G T C A G T A T C G C G T A C T A G A T C G C G T A C A G T C T A G G T A C G A T C A C G T A C G T A C G T
C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T

PH0152.1_Pou6f1_2/Jaspar

Match Rank:5
Score:0.52
Offset:-8
Orientation:forward strand
Alignment:--------TGARSWKRCC
AAACATAATGAGGTTGC-
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T A T C G C G T A C T A G A T C G C G T A C A G T C T A G G T A C G A T C
T C G A G T C A G C T A T A G C G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G T A C G G C A T C A G T A C T G G T A C A C G T

PH0114.1_Nkx2-5/Jaspar

Match Rank:6
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----TGARSWKRCC--
AAATTCAAGTGGNTTN
A C G T A C G T A C G T A C G T C A G T A T C G C G T A C T A G A T C G C G T A C A G T C T A G G T A C G A T C A C G T A C G T
C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A

PH0151.1_Pou6f1_1/Jaspar

Match Rank:7
Score:0.52
Offset:-8
Orientation:forward strand
Alignment:--------TGARSWKRCC
GACGATAATGAGCTTGC-
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T A T C G C G T A C T A G A T C G C G T A C A G T C T A G G T A C G A T C
T A C G G C T A T G A C T A C G G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G A T C G G C A T C A G T C T A G G T A C A C G T

ESR2/MA0258.2/Jaspar

Match Rank:8
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---TGARSWKRCC--
AGGTCACCCTGACCT
A C G T A C G T A C G T C A G T A T C G C G T A C T A G A T C G C G T A C A G T C T A G G T A C G A T C A C G T A C G T
C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

PH0171.1_Nkx2-1/Jaspar

Match Rank:9
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----TGARSWKRCC--
AANTTCAAGTGGCTTN
A C G T A C G T A C G T A C G T C A G T A T C G C G T A C T A G A T C G C G T A C A G T C T A G G T A C G A T C A C G T A C G T
C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A

NR1D2/MA1532.1/Jaspar

Match Rank:10
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---TGARSWKRCC--
GGGTTAGTGGGTCAT
A C G T A C G T A C G T C A G T A T C G C G T A C T A G A T C G C G T A C A G T C T A G G T A C G A T C A C G T A C G T
T C A G C A T G C A T G A C G T G A C T C G T A A T C G A C G T C T A G C A T G C T A G C A G T A G T C C T G A C A G T