Information for 3-GCTCATCAAAAC (Motif 3)

A T C G A G T C A C G T A G T C G C T A A G C T A G T C C G T A C G T A C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T C G A T A C G T A C G T C T A G C T G A C A G T A C T G C G T A A C T G T A G C
p-value:1e-13
log p-value:-3.127e+01
Information Content per bp:1.883
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets104.0 +/- 45.7bp
Average Position of motif in Background131.8 +/- 58.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GCTCATCAAAAC-
AAAGCTCGTAAAATTT
A C G T A C G T A C G T A T C G A G T C A C G T A G T C G C T A A G C T A G T C C G T A C G T A C G T A C G T A A G T C A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

HOXC13/MA0907.1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCTCATCAAAAC
GCTCGTAAAAA-
A T C G A G T C A C G T A G T C G C T A A G C T A G T C C G T A C G T A C G T A C G T A A G T C
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GCTCATCAAAAC-
AAACCTCGTAAAATTT
A C G T A C G T A C G T A T C G A G T C A C G T A G T C G C T A A G C T A G T C C G T A C G T A C G T A C G T A A G T C A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCTCATCAAAAC
NCYAATAAAA--
A T C G A G T C A C G T A G T C G C T A A G C T A G T C C G T A C G T A C G T A C G T A A G T C
C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCTCATCAAAAC
-GTCGTAAAAT-
A T C G A G T C A C G T A G T C G C T A A G C T A G T C C G T A C G T A C G T A C G T A A G T C
A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T A C G T

POU6F2/MA0793.1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCTCATCAAAAC
AGCTCATTAT---
A C G T A T C G A G T C A C G T A G T C G C T A A G C T A G T C C G T A C G T A C G T A C G T A A G T C
C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T A C G T A C G T A C G T

PB0121.1_Foxj3_2/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCTCATCAAAAC------
-AACACCAAAACAAAGGA
A T C G A G T C A C G T A G T C G C T A A G C T A G T C C G T A C G T A C G T A C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

NKX6-3/MA1530.1/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCTCATCAAAAC
-CTCATTAAA--
A T C G A G T C A C G T A G T C G C T A A G C T A G T C C G T A C G T A C G T A C G T A A G T C
A C G T T A G C A G C T A G T C C G T A A C G T A G C T C T G A G C T A G C T A A C G T A C G T

POU6F1(var.2)/MA1549.1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCTCATCAAAAC
NNCTCATTAT---
A C G T A T C G A G T C A C G T A G T C G C T A A G C T A G T C C G T A C G T A C G T A C G T A A G T C
G C T A A T G C T G A C C G A T T G A C G T C A A C G T A G C T C T G A G A C T A C G T A C G T A C G T

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCTCATCAAAAC
-CYHATAAAAN-
A T C G A G T C A C G T A G T C G C T A A G C T A G T C C G T A C G T A C G T A C G T A A G T C
A C G T T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C A C G T