Information for 16-CACAGGTCAACA (Motif 16)

A G T C C G T A A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C G T A C T G
p-value:1e-4
log p-value:-9.617e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets22.0 +/- 0.0bp
Average Position of motif in Background35.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CACAGGTCAACA
CAAAGKTCAA--
A G T C C G T A A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A G T C C G T A
G A T C G T C A T C G A T C G A C T A G C A T G A G C T G T A C T C G A T C G A A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CACAGGTCAACA-
CAAAGGTCAAGGG
A G T C C G T A A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A G T C C G T A A C G T
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

PB0049.1_Nr2f2_1/Jaspar

Match Rank:3
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CACAGGTCAACA-
TCTCAAAGGTCACGAG
A C G T A C G T A C G T A G T C C G T A A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A G T C C G T A A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

PB0053.1_Rara_1/Jaspar

Match Rank:4
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CACAGGTCAACA-
TCTCAAAGGTCACCTG
A C G T A C G T A C G T A G T C C G T A A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A G T C C G T A A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CACAGGTCAACA
CAAAGGTCAG--
A G T C C G T A A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A G T C C G T A
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:6
Score:0.69
Offset:-6
Orientation:forward strand
Alignment:------CACAGGTCAACA
AAAGGTCAAAGGTCAAC-
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A G T C C G T A
G T C A C T G A C T G A A C T G A C T G A C G T A G T C C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A C G T A A T G C A C G T

COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer

Match Rank:7
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CACAGGTCAACA
GKBCARAGGTCA---
A C G T A C G T A C G T A G T C C G T A A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A G T C C G T A
T A C G A C T G A G C T G T A C C G T A T C G A C T G A A C T G C A T G A C G T A G T C C G T A A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CACAGGTCAACA
---AGGTCA---
A G T C C G T A A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A G T C C G T A
A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T

EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer

Match Rank:9
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CACAGGTCAACA
NRBCARRGGTCA---
A C G T A C G T A C G T A G T C C G T A A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A G T C C G T A
T C A G T C A G A C G T G T A C G C T A T C A G C T G A A C T G A C T G A G C T A G T C C G T A A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CACAGGTCAACA
-TRAGGTCA---
A G T C C G T A A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A G T C C G T A
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T