Information for 3-GACTATGCGT (Motif 13)

A C T G C G T A A G T C A C G T C G T A A C G T A C T G A G T C A C T G A C G T
Reverse Opposite:
C G T A A G T C A C T G A G T C C G T A A C G T C G T A A C T G A C G T A G T C
p-value:1e-4
log p-value:-9.538e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets145.0 +/- 0.0bp
Average Position of motif in Background167.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX18/MA1563.1/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GACTATGCGT
CACAATGC--
A C T G C G T A A G T C A C G T C G T A A C G T A C T G A G T C A C T G A C G T
T A G C C T G A A G T C T C G A T G C A A G C T C T A G T A G C A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GACTATGCGT
GAATATTCAT
A C T G C G T A A G T C A C G T C G T A A C G T A C T G A G T C A C T G A C G T
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GACTATGCGT
GHATATKCAT
A C T G C G T A A G T C A C G T C G T A A C G T A C T G A G T C A C T G A C G T
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:4
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GACTATGCGT-
-----TGCGTG
A C T G C G T A A G T C A C G T C G T A A C G T A C T G A G T C A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G

HNF4G/MA0484.2/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GACTATGCGT
NNTGGACTTTGNN-
A C G T A C G T A C G T A C G T A C T G C G T A A G T C A C G T C G T A A C G T A C T G A G T C A C T G A C G T
G A C T A G T C G C A T C T A G C T A G G T C A T G A C G A C T A G C T A G C T C T A G T C A G G T C A A C G T

Sox17/MA0078.1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GACTATGCGT
GACAATGNN-
A C T G C G T A A G T C A C G T C G T A A C G T A C T G A G T C A C T G A C G T
T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T

HNF4A/MA0114.4/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GACTATGCGT
NNTGGACTTTGNN-
A C G T A C G T A C G T A C G T A C T G C G T A A G T C A C G T C G T A A C G T A C T G A G T C A C T G A C G T
G A C T G A C T G C A T C T A G C T A G G T C A T G A C G A C T A G C T A C G T C T A G C T A G G T C A A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GACTATGCGT-----
TNNATTATGCATANNTT
A C G T A C G T A C T G C G T A A G T C A C G T C G T A A C G T A C T G A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

SOX13/MA1120.1/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GACTATGCGT
AAACAATGGCA
A C G T A C T G C G T A A G T C A C G T C G T A A C G T A C T G A G T C A C T G A C G T
C T G A T C G A C T G A A G T C G C T A C T G A G C A T C T A G T C A G T G A C G C T A

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:10
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GACTATGCGT----
----TTGCGTGCVA
A C T G C G T A A G T C A C G T C G T A A C G T A C T G A G T C A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A