Information for 6-TGCCAGGCCAAC (Motif 10)

A C G T A C T G A G T C A G T C C G T A A C T G A C T G A G T C A G T C C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T A C T G A C T G A G T C A G T C A C G T A C T G A C T G A G T C C G T A
p-value:1e-4
log p-value:-9.244e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.0 +/- 0.0bp
Average Position of motif in Background99.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-TGCCAGGCCAAC-
TTGCCATGGCAACN
A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C T G A G T C A G T C C G T A C G T A A G T C A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-TGCCAGGCCAAC-
TTGCCATGGCAACC
A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C T G A G T C A G T C C G T A C G T A A G T C A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:3
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----TGCCAGGCCAAC
CGGTTGCCATGGCAAC
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C T G A G T C A G T C C G T A C G T A A G T C
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:4
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TGCCAGGCCAAC-
GTTGCCATGGCAACM
A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C T G A G T C A G T C C G T A C G T A A G T C A C G T
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

RFX3/MA0798.2/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TGCCAGGCCAAC--
TNCCATAGCAACNN
A C G T A C T G A G T C A G T C C G T A A C T G A C T G A G T C A G T C C G T A C G T A A G T C A C G T A C G T
G A C T C A T G A G T C G A T C G T C A A G C T C T G A C T A G G A T C C T G A T C G A G A T C T G A C T C A G

ZNF449/MA1656.1/Jaspar

Match Rank:6
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TGCCAGGCCAAC---
-CCAAGCCCAACCAG
A C G T A C T G A G T C A G T C C G T A A C T G A C T G A G T C A G T C C G T A C G T A A G T C A C G T A C G T A C G T
A C G T G T A C T G A C T G C A G C T A C T A G T A G C G T A C G T A C G C T A C T G A T G A C G T A C G T C A T A C G

RFX5/MA0510.2/Jaspar

Match Rank:7
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TGCCAGGCCAAC-
NGTTGCCATGGCAACG
A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C T G A G T C A G T C C G T A C G T A A G T C A C G T
A T G C C T A G A C G T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T C G A G A T C T A C G

CREB3L1/MA0839.1/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TGCCAGGCCAAC-
ATGCCACGTCATCA
A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C T G A G T C A G T C C G T A C G T A A G T C A C G T
T C G A G A C T C T A G G T A C G A T C C T G A A T G C T C A G C G A T T G A C C T G A A G C T G A T C C T G A

Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer

Match Rank:9
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TGCCAGGCCAAC-
-GCCACRCCCACY
A C G T A C T G A G T C A G T C C G T A A C T G A C T G A G T C A G T C C G T A C G T A A G T C A C G T
A C G T T C A G T G A C G T A C T G C A G T A C C T A G G T A C A T G C A G T C G T C A A G T C G A C T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TGCCAGGCCAAC
TTGCCAAG-----
A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C T G A G T C A G T C C G T A C G T A A G T C
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T