Information for 21-GTCTAGTGCT (Motif 29)

A C T G A C G T A G T C A C G T C G T A A C T G A C G T A C T G A G T C A C G T
Reverse Opposite:
C G T A A C T G A G T C C G T A A G T C A C G T C G T A A C T G C G T A A G T C
p-value:1e-2
log p-value:-6.768e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif15.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets61.0 +/- 0.0bp
Average Position of motif in Background173.9 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4/MA1153.1/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GTCTAGTGCT
TGTCTAGA---
A C G T A C T G A C G T A G T C A C G T C G T A A C T G A C G T A C T G A G T C A C G T
G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A A C G T A C G T A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GTCTAGTGCT------
CGAACAGTGCTCACTAT
A C G T A C T G A C G T A G T C A C G T C G T A A C T G A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GTCTAGTGCT
BTBRAGTGSN
A C T G A C G T A G T C A C G T C G T A A C T G A C G T A C T G A G T C A C G T
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

NKX2-8/MA0673.1/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GTCTAGTGCT
NTCAAGTGG-
A C T G A C G T A G T C A C G T C G T A A C T G A C G T A C T G A G T C A C G T
A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GTCTAGTGCT
NTCAAGTGGN
A C T G A C G T A G T C A C G T C G T A A C T G A C G T A C T G A G T C A C G T
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GTCTAGTGCT
CTYRAGTGSY
A C T G A C G T A G T C A C G T C G T A A C T G A C G T A C T G A G T C A C G T
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GTCTAGTGCT-
-TTRAGTGSYK
A C T G A C G T A G T C A C G T C G T A A C T G A C G T A C T G A G T C A C G T A C G T
A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GTCTAGTGCT-
-TTGAGTGSTT
A C T G A C G T A G T C A C G T C G T A A C T G A C G T A C T G A G T C A C G T A C G T
A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GTCTAGTGCT
CTGTCTGG----
A C G T A C G T A C T G A C G T A G T C A C G T C G T A A C T G A C G T A C T G A G T C A C G T
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GTCTAGTGCT---
NANTTTCAAGTGGTTAN
A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T C G T A A C T G A C G T A C T G A G T C A C G T A C G T A C G T A C G T
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T