Information for 9-ATGTAGACACCT (Motif 9)

C T G A A C G T A C T G G A C T C T G A A C T G T G C A A G T C C G T A T G A C G A T C A G C T
Reverse Opposite:
C T G A C A T G A C T G C G A T C T A G A C G T A G T C A G C T C G T A G T A C G T C A G A C T
p-value:1e-4
log p-value:-1.060e+01
Information Content per bp:1.662
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif46.15%
Number of Background Sequences with motif3212.0
Percentage of Background Sequences with motif5.21%
Average Position of motif in Targets111.6 +/- 45.8bp
Average Position of motif in Background102.5 +/- 79.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:ATGTAGACACCT
--BCAGACWA--
C T G A A C G T A C T G G A C T C T G A A C T G T G C A A G T C C G T A T G A C G A T C A G C T
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

ZSCAN29/MA1602.1/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---ATGTAGACACCT
NCNGTGTAGACG---
A C G T A C G T A C G T C T G A A C G T A C T G G A C T C T G A A C T G T G C A A G T C C G T A T G A C G A T C A G C T
A T G C G A T C A G T C T A C G A G C T C T A G C A G T C T G A A C T G T C G A A G T C T C A G A C G T A C G T A C G T

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:ATGTAGACACCT
GGTTAGAGACCT
C T G A A C G T A C T G G A C T C T G A A C T G T G C A A G T C C G T A T G A C G A T C A G C T
C T A G T A C G C G A T A C G T C G T A T C A G C T G A T C A G G T C A T G A C A G T C G A C T

SMAD3/MA0795.1/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-ATGTAGACACCT
CGTCTAGACA---
A C G T C T G A A C G T A C T G G A C T C T G A A C T G T G C A A G T C C G T A T G A C G A T C A G C T
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T A C G T A C G T

SMAD5/MA1557.1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-ATGTAGACACCT
TGTCTAGACA---
A C G T C T G A A C G T A C T G G A C T C T G A A C T G T G C A A G T C C G T A T G A C G A T C A G C T
G A C T T C A G C A G T T G A C A C G T T G C A T A C G G T C A G A T C G C T A A C G T A C G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:ATGTAGACACCT
----TGACACCT
C T G A A C G T A C T G G A C T C T G A A C T G T G C A A G T C C G T A T G A C G A T C A G C T
A C G T A C G T A C G T A C G T G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T

Smad4/MA1153.1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:ATGTAGACACCT
-TCTAGACA---
C T G A A C G T A C T G G A C T C T G A A C T G T G C A A G T C C G T A T G A C G A T C A G C T
A C G T A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T A C G T A C G T

PB0117.1_Eomes_2/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:ATGTAGACACCT----
NNGGCGACACCTCNNN
C T G A A C G T A C T G G A C T C T G A A C T G T G C A A G T C C G T A T G A C G A T C A G C T A C G T A C G T A C G T A C G T
A T C G T C G A T C A G A T C G T G A C C T A G G C T A A G T C C T G A A T G C A G T C G A C T G A T C A G T C T A C G A G T C

Foxl2/MA1607.1/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---ATGTAGACACCT
AATATGTAAACAAA-
A C G T A C G T A C G T C T G A A C G T A C T G G A C T C T G A A C T G T G C A A G T C C G T A T G A C G A T C A G C T
C T G A C G T A C G A T C G T A C G A T C T A G C G A T G T C A G C T A C T G A G A T C G C T A G C T A T C G A A C G T

FOXA2/MA0047.3/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:ATGTAGACACCT
ATGTAAACATA-
C T G A A C G T A C T G G A C T C T G A A C T G T G C A A G T C C G T A T G A C G A T C A G C T
C T G A C G A T C T A G G C A T G T C A G T C A G C T A A G T C G C T A G C A T C G T A A C G T