Information for 5-CGTAAGAAGA (Motif 22)

A G T C A C T G A C G T C G T A C G T A A C T G C G T A C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T A C G T A G T C A C G T A C G T C G T A A G T C A C T G
p-value:1e-3
log p-value:-8.361e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets165.0 +/- 0.0bp
Average Position of motif in Background125.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD12/MA0873.1/Jaspar

Match Rank:1
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CGTAAGAAGA
AGTCGTAAAAA--
A C G T A C G T A C G T A G T C A C T G A C G T C G T A C G T A A C T G C G T A C G T A A C T G C G T A
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A A C G T A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CGTAAGAAGA---
-GWAAYHTGABMC
A G T C A C T G A C G T C G T A C G T A A C T G C G T A C G T A A C T G C G T A A C G T A C G T A C G T
A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

POL008.1_DCE_S_I/Jaspar

Match Rank:3
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CGTAAGAAGA
----NGAAGC
A G T C A C T G A C G T C G T A C G T A A C T G C G T A C G T A A C T G C G T A
A C G T A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C

HOXC12/MA0906.1/Jaspar

Match Rank:4
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CGTAAGAAGA
GGTCGTAAAAA--
A C G T A C G T A C G T A G T C A C T G A C G T C G T A C G T A A C T G C G T A C G T A A C T G C G T A
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A A C G T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CGTAAGAAGA---
-GWAAYHTGAKMC
A G T C A C T G A C G T C G T A C G T A A C T G C G T A C G T A A C T G C G T A A C G T A C G T A C G T
A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

Gmeb1/MA0615.1/Jaspar

Match Rank:6
Score:0.58
Offset:-7
Orientation:forward strand
Alignment:-------CGTAAGAAGA
GAGTGTACGTAAGATGG
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T C G T A C G T A A C T G C G T A C G T A A C T G C G T A
A T C G G T C A A C T G A C G T C A G T C A G T T C G A A G T C C T A G A G C T G T C A G T A C T A C G C G T A A G C T T C A G A T C G

PB0027.1_Gmeb1_1/Jaspar

Match Rank:7
Score:0.58
Offset:-7
Orientation:forward strand
Alignment:-------CGTAAGAAGA
GAGTGTACGTAAGATGG
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T C G T A C G T A A C T G C G T A C G T A A C T G C G T A
A T C G G T C A A C T G A C G T C A G T C A G T T C G A A G T C C T A G A G C T G T C A G T A C T A C G C G T A A G C T T C A G A T C G

HOXD10/MA1506.1/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CGTAAGAAGA
GGTCGTAAAAC--
A C G T A C G T A C G T A G T C A C T G A C G T C G T A C G T A A C T G C G T A C G T A A C T G C G T A
T C A G T C A G A G C T G T A C T C A G A C G T C G T A C G T A G T C A G C T A G A T C A C G T A C G T

GMEB2/MA0862.1/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CGTAAGAAGA
TTACGTAA-----
A C G T A C G T A C G T A G T C A C T G A C G T C G T A C G T A A C T G C G T A C G T A A C T G C G T A
A C G T C A G T C T G A G T A C A T C G A G C T T G C A T G C A A C G T A C G T A C G T A C G T A C G T

HOXD11/MA0908.1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CGTAAGAAGA
GTCGTAAAAA--
A C G T A C G T A G T C A C T G A C G T C G T A C G T A A C T G C G T A C G T A A C T G C G T A
T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A A C G T A C G T