Information for 6-GTGNCAGGCTTT (Motif 7)

C A T G A C G T A C T G C T A G G T A C C G T A C T A G A T C G A T G C A G C T A C G T G A C T
Reverse Opposite:
C T G A C G T A C T G A A T C G A T G C A G T C A C G T C A T G A G T C G T A C G T C A G A T C
p-value:1e-4
log p-value:-9.900e+00
Information Content per bp:1.686
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif44.44%
Number of Background Sequences with motif1966.8
Percentage of Background Sequences with motif2.58%
Average Position of motif in Targets124.2 +/- 60.9bp
Average Position of motif in Background98.0 +/- 69.5bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.74
Offset:4
Orientation:forward strand
Alignment:GTGNCAGGCTTT
----CAAGCTT-
C A T G A C G T A C T G C T A G G T A C C G T A C T A G A T C G A T G C A G C T A C G T G A C T
A C G T A C G T A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:GTGNCAGGCTTT
---CNAGGCCT-
C A T G A C G T A C T G C T A G G T A C C G T A C T A G A T C G A T G C A G C T A C G T G A C T
A C G T A C G T A C G T A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GTGNCAGGCTTT
---CTAGGCCT-
C A T G A C G T A C T G C T A G G T A C C G T A C T A G A T C G A T G C A G C T A C G T G A C T
A C G T A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GTGNCAGGCTTT
AGGTGHCAGACA--
A C G T A C G T C A T G A C G T A C T G C T A G G T A C C G T A C T A G A T C G A T G C A G C T A C G T G A C T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GTGNCAGGCTTT
VBTGWCAGCB---
A C G T C A T G A C G T A C T G C T A G G T A C C G T A C T A G A T C G A T G C A G C T A C G T G A C T
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GTGNCAGGCTTT
TTGACAGC----
C A T G A C G T A C T G C T A G G T A C C G T A C T A G A T C G A T G C A G C T A C G T G A C T
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GTGNCAGGCTTT
AGGTGNCAGACAG-
A C G T A C G T C A T G A C G T A C T G C T A G G T A C C G T A C T A G A T C G A T G C A G C T A C G T G A C T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GTGNCAGGCTTT--
NNGGCCACGCCTTTN
A C G T C A T G A C G T A C T G C T A G G T A C C G T A C T A G A T C G A T G C A G C T A C G T G A C T A C G T A C G T
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:9
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GTGNCAGGCTTT
TGAGTGACAGSC---
A C G T A C G T A C G T C A T G A C G T A C T G C T A G G T A C C G T A C T A G A T C G A T G C A G C T A C G T G A C T
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GTGNCAGGCTTT
TTGCCAAG----
C A T G A C G T A C T G C T A G G T A C C G T A C T A G A T C G A T G C A G C T A C G T G A C T
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T