| p-value: | 1e-7 |
| log p-value: | -1.840e+01 |
| Information Content per bp: | 1.523 |
| Number of Target Sequences with motif | 35.0 |
| Percentage of Target Sequences with motif | 3.96% |
| Number of Background Sequences with motif | 623.2 |
| Percentage of Background Sequences with motif | 1.29% |
| Average Position of motif in Targets | 95.1 +/- 54.4bp |
| Average Position of motif in Background | 98.3 +/- 57.4bp |
| Strand Bias (log2 ratio + to - strand density) | 1.0 |
| Multiplicity (# of sites on avg that occur together) | 1.03 |
| Motif File: | file (matrix) reverse opposite |
| SVG Files for Logos: | forward logo reverse opposite |
SD0003.1_at_AC_acceptor/Jaspar
| Match Rank: | 1 |
| Score: | 0.54 |
| Offset: | -3 |
| Orientation: | forward strand |
| Alignment: | ---ATRGMCGATA AAGATATCCTT-- |
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Six3/MA0631.1/Jaspar
| Match Rank: | 2 |
| Score: | 0.54 |
| Offset: | -7 |
| Orientation: | reverse strand |
| Alignment: | -------ATRGMCGATA ANANGTGATACCCTATN |
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PH0163.1_Six3/Jaspar
| Match Rank: | 3 |
| Score: | 0.54 |
| Offset: | -7 |
| Orientation: | reverse strand |
| Alignment: | -------ATRGMCGATA ANANGTGATACCCTATN |
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|
PB0163.1_Six6_2/Jaspar
| Match Rank: | 4 |
| Score: | 0.54 |
| Offset: | -8 |
| Orientation: | reverse strand |
| Alignment: | --------ATRGMCGATA ANNNGGATATATCCNNN- |
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|
PH0165.1_Six6_1/Jaspar
| Match Rank: | 5 |
| Score: | 0.53 |
| Offset: | -7 |
| Orientation: | reverse strand |
| Alignment: | -------ATRGMCGATA ANANNTGATACCCTATN |
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|
|
Foxq1/MA0040.1/Jaspar
| Match Rank: | 6 |
| Score: | 0.53 |
| Offset: | -1 |
| Orientation: | reverse strand |
| Alignment: | -ATRGMCGATA AATAAACAATN |
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|
|
YY1/MA0095.2/Jaspar
| Match Rank: | 7 |
| Score: | 0.52 |
| Offset: | -4 |
| Orientation: | forward strand |
| Alignment: | ----ATRGMCGATA CAAGATGGCGGC-- |
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|
|
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer
| Match Rank: | 8 |
| Score: | 0.52 |
| Offset: | -4 |
| Orientation: | reverse strand |
| Alignment: | ----ATRGMCGATA GTTAATGGCC---- |
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|
PB0134.1_Hnf4a_2/Jaspar
| Match Rank: | 9 |
| Score: | 0.51 |
| Offset: | -3 |
| Orientation: | reverse strand |
| Alignment: | ---ATRGMCGATA--- NNATTGGACTTTNGNN |
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|
YY2/MA0748.2/Jaspar
| Match Rank: | 10 |
| Score: | 0.51 |
| Offset: | -2 |
| Orientation: | forward strand |
| Alignment: | --ATRGMCGATA AGATGGCGGCG- |
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