Information for 5-GAACATTGAT (Motif 16)

A T C G G T C A T G C A G A T C G C T A A C G T C A G T C A T G G C T A A G C T
Reverse Opposite:
T C G A C G A T G T A C G T C A T G C A C G A T C T A G A C G T C A G T T A G C
p-value:1e-8
log p-value:-2.053e+01
Information Content per bp:1.533
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif3.41%
Number of Background Sequences with motif338.6
Percentage of Background Sequences with motif0.71%
Average Position of motif in Targets90.5 +/- 52.0bp
Average Position of motif in Background102.1 +/- 59.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:1
Score:0.78
Offset:4
Orientation:reverse strand
Alignment:GAACATTGAT----
----ATTGATTYND
A T C G G T C A T G C A G A T C G C T A A C G T C A G T C A T G G C T A A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T

Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer

Match Rank:2
Score:0.77
Offset:3
Orientation:forward strand
Alignment:GAACATTGAT-
---TATTGAYY
A T C G G T C A T G C A G A T C G C T A A C G T C A G T C A T G G C T A A G C T A C G T
A C G T A C G T A C G T G C A T C G T A C G A T G A C T A C T G C T G A G A C T G A T C

SOX9/MA0077.1/Jaspar

Match Rank:3
Score:0.72
Offset:2
Orientation:forward strand
Alignment:GAACATTGAT-
--CCATTGTTC
A T C G G T C A T G C A G A T C G C T A A C G T C A G T C A T G G C T A A G C T A C G T
A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:4
Score:0.72
Offset:2
Orientation:forward strand
Alignment:GAACATTGAT--
--NTATYGATCH
A T C G G T C A T G C A G A T C G C T A A C G T C A G T C A T G G C T A A G C T A C G T A C G T
A C G T A C G T C T A G C A G T C G T A A C G T A G T C A C T G C G T A A G C T A G T C G A T C

Sox5/MA0087.1/Jaspar

Match Rank:5
Score:0.71
Offset:4
Orientation:forward strand
Alignment:GAACATTGAT-
----ATTGTTA
A T C G G T C A T G C A G A T C G C T A A C G T C A G T C A T G G C T A A G C T A C G T
A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GAACATTGAT--
--CCATTGTTYB
A T C G G T C A T G C A G A T C G C T A A C G T C A G T C A T G G C T A A G C T A C G T A C G T
A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer

Match Rank:7
Score:0.69
Offset:3
Orientation:forward strand
Alignment:GAACATTGAT---
---TATCGATNAN
A T C G G T C A T G C A G A T C G C T A A C G T C A G T C A T G G C T A A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A A G C T G A T C C T A G C T G A A G C T G T C A T C G A C G T A

CUX1/MA0754.1/Jaspar

Match Rank:8
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:GAACATTGAT--
--NTATCGATTA
A T C G G T C A T G C A G A T C G C T A A C G T C A G T C A T G G C T A A G C T A C G T A C G T
A C G T A C G T C A G T A C G T C G T A G C A T A G T C T C A G T C G A G A C T G A C T C T G A

SOX8/MA0868.2/Jaspar

Match Rank:9
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:GAACATTGAT--
--CCATTGTTCT
A T C G G T C A T G C A G A T C G C T A A C G T C A G T C A T G G C T A A G C T A C G T A C G T
A C G T A C G T A T G C G A T C C G T A C A G T C G A T T C A G C G A T G A C T G A T C A C G T

SOX14/MA1562.1/Jaspar

Match Rank:10
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:GAACATTGAT---
---CATTGTTCGG
A T C G G T C A T G C A G A T C G C T A A C G T C A G T C A T G G C T A A G C T A C G T A C G T A C G T
A C G T A C G T A C G T G T A C T G C A C A G T A C G T T C A G C G A T G C A T G T A C C T A G A C T G