Information for 9-TBAAGCTTVAGT (Motif 12)

A G C T A C G T C G T A C G T A C T A G G T A C A C G T A C G T T C G A C G T A A T C G A C G T
Reverse Opposite:
C G T A A T G C A C G T A G C T C G T A C G T A C A T G A G T C C G A T A C G T T C G A C T G A
p-value:1e-3
log p-value:-8.204e+00
Information Content per bp:1.763
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif781.2
Percentage of Background Sequences with motif1.62%
Average Position of motif in Targets94.2 +/- 52.8bp
Average Position of motif in Background103.1 +/- 63.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:TBAAGCTTVAGT
--AAGCTTG---
A G C T A C G T C G T A C G T A C T A G G T A C A C G T A C G T T C G A C G T A A T C G A C G T
A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T A C G T

PAX6/MA0069.1/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TBAAGCTTVAGT-
TTCACGCATGAGTT
A C G T A G C T A C G T C G T A C G T A C T A G G T A C A C G T A C G T T C G A C G T A A T C G A C G T A C G T
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T

NKX2-5/MA0063.2/Jaspar

Match Rank:3
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:TBAAGCTTVAGT---
----NNTTGAGTGNN
A G C T A C G T C G T A C G T A C T A G G T A C A C G T A C G T T C G A C G T A A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A G C T C G A T G C A T C T A G C G T A C T A G G A C T C T A G A C T G A G C T

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TBAAGCTTVAGT-------
TTTMCGCTTSABTGAACACN
A C G T A G C T A C G T C G T A C G T A C T A G G T A C A C G T A C G T T C G A C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T C A G T G A C T T G A C G A T C T C A G A T G C G C A T A G C T T A C G C T G A A T C G G A C T C T A G T G C A T C G A A G T C G C T A A T G C T C G A

PH0115.1_Nkx2-6/Jaspar

Match Rank:5
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TBAAGCTTVAGT------
--AATNTTAAGTGGNTNN
A G C T A C G T C G T A C G T A C T A G G T A C A C G T A C G T T C G A C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TBAAGCTTVAGT-------
--NTNNTTAAGTGGNTNAN
A G C T A C G T C G T A C G T A C T A G G T A C A C G T A C G T T C G A C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

PAX1/MA0779.1/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TBAAGCTTVAGT---
CGTCACGCATGACTGCA
A C G T A C G T A G C T A C G T C G T A C G T A C T A G G T A C A C G T A C G T T C G A C G T A A T C G A C G T A C G T A C G T A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

NKX2-2/MA1645.1/Jaspar

Match Rank:8
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TBAAGCTTVAGT-----
---NNNTTGAGTGGNNN
A G C T A C G T C G T A C G T A C T A G G T A C A C G T A C G T T C G A C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C G A T A G T C A G C T C A G T T A C G C G T A C A T G C G A T C T A G A C T G G C A T C G A T C T G A

PAX9/MA0781.1/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TBAAGCTTVAGT---
CGTCACGCATGACTGCA
A C G T A C G T A G C T A C G T C G T A C G T A C T A G G T A C A C G T A C G T T C G A C G T A A T C G A C G T A C G T A C G T A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:10
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:TBAAGCTTVAGT---
-----CTYRAGTGSY
A G C T A C G T C G T A C G T A C T A G G T A C A C G T A C G T T C G A C G T A A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C