Information for 5-TTGACCTGTAGG (Motif 6)

A C G T A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C G T C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T C G T A A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A
p-value:1e-4
log p-value:-9.961e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif13.33%
Number of Background Sequences with motif48.2
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets152.0 +/- 17.0bp
Average Position of motif in Background102.8 +/- 80.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0049.1_Nr2f2_1/Jaspar

Match Rank:1
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---TTGACCTGTAGG-
NNNNTGACCTTTNNNN
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C G T C G T A A C T G A C T G A C G T
A G T C C G A T A T G C C A T G A G C T T C A G G T C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A C A T G G T C A

RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TTGACCTGTAGG
TTGAMCTTTG--
A C G T A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C G T C G T A A C T G A C T G
A G C T A G C T C A T G C T G A G T A C A G T C A G C T A G C T C A G T C T A G A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TTGACCTGTAGG
-TGACCT-----
A C G T A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C G T C G T A A C T G A C T G
A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:4
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---TTGACCTGTAGG-
NNNGTGACCTTTGNNN
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C G T C G T A A C T G A C T G A C G T
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A

Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer

Match Rank:5
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TTGACCTGTAGG
TYTGACCASWRG-
A C G T A C G T A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C G T C G T A A C T G A C T G
G A C T A G T C C G A T A C T G C T G A T G A C G T A C C G T A A T C G G C A T C T G A C T A G A C G T

NR2F2/MA1111.1/Jaspar

Match Rank:6
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TTGACCTGTAGG
NNTGACCTTTN--
A C G T A C G T A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C G T C G T A A C T G A C T G
G A C T G A C T G A C T C T A G T G C A G A T C G T A C G A C T G C A T C A G T C T A G A C G T A C G T

NR4A1/MA1112.2/Jaspar

Match Rank:7
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TTGACCTGTAGG
NNTGACCTTTNN-
A C G T A C G T A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C G T C G T A A C T G A C T G
G A C T A G C T G A C T T C A G T G C A G T A C G T A C A G C T G A C T G A C T C G T A G T C A A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:8
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TTGACCTGTAGG
-TGACCTYA---
A C G T A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C G T C G T A A C T G A C T G
A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:9
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TTGACCTGTAGG
CNNTTGACCTTTG--
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C G T C G T A A C T G A C T G
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:10
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TTGACCTGTAGG
-TGACCTTGAT-
A C G T A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C G T C G T A A C T G A C T G
A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T