Information for 16-AAGGGGAT (Motif 42)

C T G A T C G A C T A G T C A G A C T G A C T G G C T A A C G T
Reverse Opposite:
T G C A C G A T G T A C G T A C A G T C A G T C A G C T G A C T
p-value:1e-3
log p-value:-8.697e+00
Information Content per bp:1.696
Number of Target Sequences with motif1887.0
Percentage of Target Sequences with motif15.34%
Number of Background Sequences with motif5326.4
Percentage of Background Sequences with motif14.19%
Average Position of motif in Targets101.6 +/- 57.1bp
Average Position of motif in Background99.8 +/- 56.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Crx/MA0467.1/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:forward strand
Alignment:AAGGGGAT---
AAGAGGATTAG
C T G A T C G A C T A G T C A G A C T G A C T G G C T A A C G T A C G T A C G T A C G T
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

PH0121.1_Obox1/Jaspar

Match Rank:2
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--AAGGGGAT-------
TTAAGGGGATTAACTAC
A C G T A C G T C T G A T C G A C T A G T C A G A C T G A C T G G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T C G A T T C G A T C G A C T A G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C G T A G T A C C G A T G C T A A G T C

MZF1/MA0056.2/Jaspar

Match Rank:3
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--AAGGGGAT---
NNNTGGGGATTNN
A C G T A C G T C T G A T C G A C T A G T C A G A C T G A C T G G C T A A C G T A C G T A C G T A C G T
T C G A C G T A C T A G C G A T C T A G C T A G C A T G A C T G G C T A A C G T A C G T C G A T C A T G

PH0126.1_Obox6/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AAGGGGAT-----
AAAAACGGATTATTG
A C G T A C G T C T G A T C G A C T A G T C A G A C T G A C T G G C T A A C G T A C G T A C G T A C G T A C G T A C G T
G T C A G C T A C T G A G C T A C T A G T A G C C T A G A C T G G T C A A C G T G A C T C G T A C G A T G A C T A T C G

PH0137.1_Pitx1/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AAGGGGAT-------
TTAGAGGGATTAACAAT
A C G T A C G T C T G A T C G A C T A G T C A G A C T G A C T G G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer

Match Rank:6
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----AAGGGGAT--
NMMNBAAAGGGTTAA
A C G T A C G T A C G T A C G T A C G T C T G A T C G A C T A G T C A G A C T G A C T G G C T A A C G T A C G T A C G T
T A C G T G C A G T C A G C A T A C T G T G C A T C G A C T G A C A T G C T A G A C T G C A G T G A C T C G T A G T C A

PB0098.1_Zfp410_1/Jaspar

Match Rank:7
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---AAGGGGAT------
TATTATGGGATGGATAA
A C G T A C G T A C G T C T G A T C G A C T A G T C A G A C T G A C T G G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T T C G A C A G T C G A T G T C A C G A T C A T G C A T G C A T G C T G A C A G T C T A G A C T G T G C A C A G T C G T A T G C A

PH0035.1_Gsc/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AAGGGGAT--------
NNAAGGGATTAACGANT
A C G T C T G A T C G A C T A G T C A G A C T G A C T G G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G T A G T C A C T G A T A C G C T A G C T A G G T C A A C G T A G C T C G T A C T G A A G T C C A T G C G T A A G C T C G A T

RHOXF1/MA0719.1/Jaspar

Match Rank:9
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:AAGGGGAT---
---NGGATTAN
C T G A T C G A C T A G T C A G A C T G A C T G G C T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T

PH0122.1_Obox2/Jaspar

Match Rank:10
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AAGGGGAT-------
TGAGGGGGATTAACTAT
A C G T A C G T C T G A T C G A C T A G T C A G A C T G A C T G G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T A C T G T C G A C T A G C T A G C T A G C T A G C A T G G T C A C A G T G C A T C G T A C G T A G T A C C G A T G T C A G A C T