Information for 1-CACTTATA (Motif 5)

G T A C G T C A G T A C C G A T A C G T C T G A A G C T G T C A
Reverse Opposite:
C A G T C T G A G A C T G T C A C G T A A C T G A C G T C A T G
p-value:1e-11
log p-value:-2.564e+01
Information Content per bp:1.826
Number of Target Sequences with motif103.0
Percentage of Target Sequences with motif12.39%
Number of Background Sequences with motif2877.9
Percentage of Background Sequences with motif6.04%
Average Position of motif in Targets103.4 +/- 59.5bp
Average Position of motif in Background99.7 +/- 63.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3-2/MA0122.3/Jaspar

Match Rank:1
Score:0.84
Offset:-5
Orientation:forward strand
Alignment:-----CACTTATA
ATAACCACTTAAA
A C G T A C G T A C G T A C G T A C G T G T A C G T C A G T A C C G A T A C G T C T G A A G C T G T C A
C G T A C G A T C G T A C G T A T G A C G A T C G C T A G T A C G C A T G A C T G C T A C G T A G C T A

Nkx3-1/MA0124.2/Jaspar

Match Rank:2
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--CACTTATA
ACCACTTAA-
A C G T A C G T G T A C G T C A G T A C C G A T A C G T C T G A A G C T G T C A
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T

ISL2/MA0914.1/Jaspar

Match Rank:3
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-CACTTATA
GCACTTAA-
A C G T G T A C G T C A G T A C C G A T A C G T C T G A A G C T G T C A
T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:4
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--CACTTATA
ACCACTTGAA
A C G T A C G T G T A C G T C A G T A C C G A T A C G T C T G A A G C T G T C A
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

PH0004.1_Nkx3-2/Jaspar

Match Rank:5
Score:0.77
Offset:-6
Orientation:forward strand
Alignment:------CACTTATA---
CATAACCACTTAACAAC
A C G T A C G T A C G T A C G T A C G T A C G T G T A C G T C A G T A C C G A T A C G T C T G A A G C T G T C A A C G T A C G T A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:6
Score:0.74
Offset:-6
Orientation:forward strand
Alignment:------CACTTATA---
CTTAACCACTTAAGGAT
A C G T A C G T A C G T A C G T A C G T A C G T G T A C G T C A G T A C C G A T A C G T C T G A A G C T G T C A A C G T A C G T A C G T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:7
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CACTTATA
CCACTTGAA
A C G T G T A C G T C A G T A C C G A T A C G T C T G A A G C T G T C A
T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A

PH0115.1_Nkx2-6/Jaspar

Match Rank:8
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----CACTTATA---
TAAGCCACTTAACATT
A C G T A C G T A C G T A C G T A C G T G T A C G T C A G T A C C G A T A C G T C T G A A G C T G T C A A C G T A C G T A C G T
C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:9
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---CACTTATA
MRSCACTYAA-
A C G T A C G T A C G T G T A C G T C A G T A C C G A T A C G T C T G A A G C T G T C A
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:10
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---CACTTATA
AAGCACTTAA-
A C G T A C G T A C G T G T A C G T C A G T A C C G A T A C G T C T G A A G C T G T C A
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T