Information for 1-YCATMYTTAKKG (Motif 1)

A G T C A G T C C T G A A C G T T G A C A G C T A C G T A C G T C G T A A C T G A C G T A C T G
Reverse Opposite:
A G T C G T C A G T A C A C G T C G T A C G T A C T G A A C G T C G T A A G C T A C T G C T A G
p-value:1e-6
log p-value:-1.523e+01
Information Content per bp:1.831
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif113.0
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets135.7 +/- 38.2bp
Average Position of motif in Background100.3 +/- 72.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.2/Jaspar

Match Rank:1
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:YCATMYTTAKKG---
---NTTTTATTGCNN
A G T C A G T C C T G A A C G T T G A C A G C T A C G T A C G T C G T A A C T G A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T C G A T G C A T C G A T G C A T G C A T T C G A G A C T C A G T C T A G G A T C G C A T G A C T

HOXB4/MA1499.1/Jaspar

Match Rank:2
Score:0.60
Offset:2
Orientation:forward strand
Alignment:YCATMYTTAKKG
--ATCATTAG--
A G T C A G T C C T G A A C G T T G A C A G C T A C G T A C G T C G T A A C T G A C G T A C T G
A C G T A C G T T C G A A G C T G T A C C T G A A C G T A C G T C T G A T C A G A C G T A C G T

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:YCATMYTTAKKG--
----TTTNATTGCY
A G T C A G T C C T G A A C G T T G A C A G C T A C G T A C G T C G T A A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T G T C A A C G T C A G T C T A G A T G C G A T C

PH0039.1_Mnx1/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-YCATMYTTAKKG---
GTACTAATTAGTGGCG
A C G T A G T C A G T C C T G A A C G T T G A C A G C T A C G T A C G T C G T A A C T G A C G T A C T G A C G T A C G T A C G T
A C T G A C G T T G C A A T G C G A C T G T C A C G T A G A C T A C G T C T G A A T C G A C G T C T A G T A C G G A T C T A C G

HOXA4/MA1496.1/Jaspar

Match Rank:5
Score:0.59
Offset:2
Orientation:forward strand
Alignment:YCATMYTTAKKG
--GTCATTAG--
A G T C A G T C C T G A A C G T T G A C A G C T A C G T A C G T C G T A A C T G A C G T A C T G
A C G T A C G T T C A G A G C T T G A C C T G A A C G T A G C T T C G A T C A G A C G T A C G T

HOXD4/MA1507.1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:YCATMYTTAKKG
--ATCATTAG--
A G T C A G T C C T G A A C G T T G A C A G C T A C G T A C G T C G T A A C T G A C G T A C T G
A C G T A C G T T C G A A G C T G T A C C T G A A C G T A C G T C T G A C T A G A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:YCATMYTTAKKG--
--DGWTTTATGRCN
A G T C A G T C C T G A A C G T T G A C A G C T A C G T A C G T C G T A A C T G A C G T A C T G A C G T A C G T
A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

FOXL1/MA0033.2/Jaspar

Match Rank:8
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:YCATMYTTAKKG
---TGTTTAC--
A G T C A G T C C T G A A C G T T G A C A G C T A C G T A C G T C G T A A C T G A C G T A C T G
A C G T A C G T A C G T C A G T C T A G A C G T C A G T A C G T C T G A G A T C A C G T A C G T

HOXC4/MA1504.1/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:YCATMYTTAKKG
--GTCATTAA--
A G T C A G T C C T G A A C G T T G A C A G C T A C G T A C G T C G T A A C T G A C G T A C T G
A C G T A C G T T C A G G A C T G T A C C T G A A C G T A C G T C T G A T C G A A C G T A C G T

FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:YCATMYTTAKKG
NVWTGTTTAC--
A G T C A G T C C T G A A C G T T G A C A G C T A C G T A C G T C G T A A C T G A C G T A C T G
A G C T T G A C C G A T C G A T C T A G A C G T C A G T C A G T G C T A A G T C A C G T A C G T