Information for 3-CTCGTAGAAA (Motif 7)

A G T C A G C T A G T C A C T G A C G T C G T A A C T G C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T C G A T G T A C A C G T C G T A A G T C A C T G C T G A A C T G
p-value:1e-11
log p-value:-2.627e+01
Information Content per bp:1.947
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.14%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets77.7 +/- 54.7bp
Average Position of motif in Background123.6 +/- 41.5bp
Strand Bias (log2 ratio + to - strand density)3.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-CTCGTAGAAA
GCTCGTAAAAA
A C G T A G T C A G C T A G T C A C T G A C G T C G T A A C T G C G T A C G T A C G T A
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.77
Offset:-4
Orientation:forward strand
Alignment:----CTCGTAGAAA--
AAACCTCGTAAAATTT
A C G T A C G T A C G T A C G T A G T C A G C T A G T C A C T G A C G T C G T A A C T G C G T A C G T A C G T A A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----CTCGTAGAAA--
AAAGCTCGTAAAATTT
A C G T A C G T A C G T A C G T A G T C A G C T A G T C A C T G A C G T C G T A A C T G C G T A C G T A C G T A A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

HOXD12/MA0873.1/Jaspar

Match Rank:4
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CTCGTAGAAA
AGTCGTAAAAA
A C G T A G T C A G C T A G T C A C T G A C G T C G T A A C T G C G T A C G T A C G T A
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

HOXC12/MA0906.1/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CTCGTAGAAA
GGTCGTAAAAA
A C G T A G T C A G C T A G T C A C T G A C G T C G T A A C T G C G T A C G T A C G T A
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A

HOXD11/MA0908.1/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CTCGTAGAAA
GTCGTAAAAA
A G T C A G C T A G T C A C T G A C G T C G T A A C T G C G T A C G T A C G T A
T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A

HOXD10/MA1506.1/Jaspar

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTCGTAGAAA
GGTCGTAAAAC
A C G T A G T C A G C T A G T C A C T G A C G T C G T A A C T G C G T A C G T A C G T A
T C A G T C A G A G C T G T A C T C A G A C G T C G T A C G T A G T C A G C T A G A T C

HOXC11/MA0651.1/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CTCGTAGAAA
GGTCGTAAAAT
A C G T A G T C A G C T A G T C A C T G A C G T C G T A A C T G C G T A C G T A C G T A
C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T

HOXC9/MA0485.2/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTCGTAGAAA
GTCGTAAAAT
A G T C A G C T A G T C A C T G A C G T C G T A A C T G C G T A C G T A C G T A
T C A G A G C T A G T C C T A G A C G T C G T A C G T A G T C A G C T A G A C T

Hoxa11/MA0911.1/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CTCGTAGAAA-
GGTCGTAAAATT
A C G T A G T C A G C T A G T C A C T G A C G T C G T A A C T G C G T A C G T A C G T A A C G T
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T