Information for 8-AGCAGGGTATGA (Motif 9)

C G T A A C T G A G T C C G T A A C T G A C T G A C T G A C G T C G T A C G A T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A A C G T C G T A A G T C A G T C A G T C A C G T A C T G A G T C A C G T
p-value:1e-13
log p-value:-3.100e+01
Information Content per bp:1.972
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets103.9 +/- 45.4bp
Average Position of motif in Background53.4 +/- 24.6bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AGCAGGGTATGA
CACAGCAGGGG----
A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C T G A C T G A C T G A C G T C G T A C G A T A C T G C G T A
T A G C T C G A A G T C T G C A T A C G A G T C T C G A A T C G A C T G T A C G T C A G A C G T A C G T A C G T A C G T

Spz1/MA0111.1/Jaspar

Match Rank:2
Score:0.64
Offset:3
Orientation:forward strand
Alignment:AGCAGGGTATGA--
---AGGGTAACAGC
C G T A A C T G A G T C C G T A A C T G A C T G A C T G A C G T C G T A C G A T A C T G C G T A A C G T A C G T
A C G T A C G T A C G T C T G A A T C G C T A G A C T G C A G T C G T A C G T A T A G C C T G A A C T G T A G C

PH0166.1_Six6_2/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGCAGGGTATGA-----
AATAGGGTATCAATATT
C G T A A C T G A G T C C G T A A C T G A C T G A C T G A C G T C G T A C G A T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
C T G A C G T A C G A T T C G A C T A G C A T G T C A G C A G T C T G A A C G T G A T C G C T A G C T A G A C T G C T A G A C T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AGCAGGGTATGA
CACAGCAGGGGG---
A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C T G A C T G A C T G A C G T C G T A C G A T A C T G C G T A
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T

PB0059.1_Six6_1/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGCAGGGTATGA-----
AATAGGGTATCATATAT
C G T A A C T G A G T C C G T A A C T G A C T G A C T G A C G T C G T A C G A T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
C T G A G C T A C G A T T C G A C T A G A C T G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C G T A C G A T G C T A G A C T

Zic2/MA1629.1/Jaspar

Match Rank:6
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----AGCAGGGTATGA
CTCACAGCAGGGGG---
A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C T G A C T G A C T G A C G T C G T A C G A T A C T G C G T A
T G A C C A G T T G A C G C T A T A G C G T C A T A C G A G T C C T G A C A T G A T C G C T A G T C A G T C A G A C G T A C G T A C G T

Six3/MA0631.1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGCAGGGTATGA-----
GATAGGGTATCACTAAT
C G T A A C T G A G T C C G T A A C T G A C T G A C T G A C G T C G T A C G A T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
C T A G C G T A C G A T C T G A T A C G A C T G T C A G A C G T C T G A A C G T G A T C T C G A G A T C G C A T C G A T G C T A A C G T

PH0163.1_Six3/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGCAGGGTATGA-----
GATAGGGTATCACTAAT
C G T A A C T G A G T C C G T A A C T G A C T G A C T G A C G T C G T A C G A T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
C T A G C G T A C G A T C T G A T A C G A C T G T C A G A C G T C T G A A C G T G A T C T C G A G A T C G C A T C G A T G C T A A C G T

PH0165.1_Six6_1/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGCAGGGTATGA-----
AATAGGGTATCAATTAT
C G T A A C T G A G T C C G T A A C T G A C T G A C T G A C G T C G T A C G A T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
C T G A G C T A C G A T T C G A T C A G A C T G T C A G A C G T C T G A A C G T G A T C C G T A G T C A C G A T G C A T G C T A A C G T

PH0162.1_Six2/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGCAGGGTATGA-----
AATGGGGTATCACGTTT
C G T A A C T G A G T C C G T A A C T G A C T G A C T G A C G T C G T A C G A T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
C T G A G C T A C A G T T C A G C T A G A C T G C T A G A C G T C T G A A C G T G A T C C T G A G A T C C A G T G C A T G A C T C A G T