Information for 11-TGCTTGACCG (Motif 20)

A C G T A C T G A G T C A C G T A C G T A C T G C G T A A G T C A G T C A C T G
Reverse Opposite:
A G T C A C T G A C T G A C G T A G T C C G T A C G T A A C T G A G T C C G T A
p-value:1e-3
log p-value:-8.856e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif9.09%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets183.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5/MA0014.3/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TGCTTGACCG-
GAGCGTGACCCC
A C G T A C G T A C T G A G T C A C G T A C G T A C T G C G T A A G T C A G T C A C T G A C G T
T C A G C T G A T A C G A G T C T C A G G C A T T A C G C T G A T A G C A G T C G T A C A G T C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TGCTTGACCG-
NTGATTGACAGN
A C G T A C G T A C T G A G T C A C G T A C G T A C T G C G T A A G T C A G T C A C T G A C G T
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TGCTTGACCG--
TGAGTGACAGSC
A C G T A C T G A G T C A C G T A C G T A C T G C G T A A G T C A G T C A C T G A C G T A C G T
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TGCTTGACCG
TGACCTTGACCT
A C G T A C G T A C G T A C T G A G T C A C G T A C G T A C T G C G T A A G T C A G T C A C T G
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TGCTTGACCG-
BTGABTGACAGS
A C G T A C G T A C T G A G T C A C G T A C G T A C T G C G T A A G T C A G T C A C T G A C G T
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.63
Offset:3
Orientation:forward strand
Alignment:TGCTTGACCG-
---TTGACAGC
A C G T A C T G A G T C A C G T A C G T A C T G C G T A A G T C A G T C A C T G A C G T
A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

NR2C1/MA1535.1/Jaspar

Match Rank:7
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:TGCTTGACCG--
---NTGACCTCN
A C G T A C T G A G T C A C G T A C G T A C T G C G T A A G T C A G T C A C T G A C G T A C G T
A C G T A C G T A C G T C T A G A G C T A T C G G T C A A G T C G T A C A G C T G A T C C A T G

PB0157.1_Rara_2/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TGCTTGACCG------
NNCNTGACCCCGCTCT
A C G T A C T G A G T C A C G T A C G T A C T G C G T A A G T C A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:TGCTTGACCG
----TGACCT
A C G T A C T G A G T C A C G T A C G T A C T G C G T A A G T C A G T C A C T G
A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

PKNOX1/MA0782.2/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TGCTTGACCG---
TTTGAGTGACAGCTA
A C G T A C G T A C G T A C T G A G T C A C G T A C G T A C T G C G T A A G T C A G T C A C T G A C G T A C G T A C G T
C G A T G C A T C G A T T C A G C T G A A C T G C G A T A T C G C T G A G A T C C G T A A C T G T A G C A G C T C T G A