Information for 11-TTCGCCATGG (Motif 32)

A C G T A C G T A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A A C G T A C T G A C T G A G T C A C T G C G T A C G T A
p-value:1e-3
log p-value:-7.301e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif7.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets173.0 +/- 0.0bp
Average Position of motif in Background108.2 +/- 111.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:TTCGCCATGG-----
-TTGCCATGGCAACN
A C G T A C G T A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

YY2/MA0748.2/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TTCGCCATGG
CGCCGCCATNN
A C G T A C G T A C G T A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G
A T G C C A T G A T G C T A G C C T A G A G T C A T G C T C G A A G C T A T G C C A G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TTCGCCATGG-----
-TTGCCATGGCAACC
A C G T A C G T A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

RFX3/MA0798.2/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TTCGCCATGG--
CGGTTGCTATGGCA
A C G T A C G T A C G T A C G T A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C G T
A G T C A C T G C T A G A G C T G A C T C T A G G A T C G A C T T C G A C A G T C T A G T C A G G T A C C T G A

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:5
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TTCGCCATGG-
NNAATTAGTCACGGT
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G A C G T
A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TTCGCCATGG-----
GTTGCCATGGCAACM
A C G T A C G T A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TTCGCCATGG------
GTTGCCATGGCAACCG
A C G T A C G T A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

RFX1/MA0509.2/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TTCGCCATGG--
CTGTTGCTATGGCA
A C G T A C G T A C G T A C G T A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C G T
A G T C C A G T C T A G A G C T G A C T C T A G G A T C A G C T C T G A C A G T C T A G T C A G G T A C C T G A

EBF1/MA0154.4/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TTCGCCATGG----
AGTCCCCAGGGGACT
A C G T A C G T A C G T A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T
C G T A C T A G A C G T A G T C G A T C G A T C G T A C C G T A C T A G C T A G C T A G T C A G T G C A G T A C G C A T

RFX4/MA0799.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TTCGCCATGG-----
CGTTGCCATGGCAACN
A C G T A C G T A C G T A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G