Information for 3-CCACAGGCTCCA (Motif 6)

A G T C A G T C C G T A A G T C C G T A A C T G T A C G G T A C G A C T A T G C T G A C C G T A
Reverse Opposite:
A C G T A C T G T A C G C T G A A C T G A T G C A G T C C G A T A C T G A C G T A C T G C T A G
p-value:1e-9
log p-value:-2.133e+01
Information Content per bp:1.828
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.32%
Number of Background Sequences with motif36.1
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets104.5 +/- 54.2bp
Average Position of motif in Background94.9 +/- 54.7bp
Strand Bias (log2 ratio + to - strand density)2.1
Multiplicity (# of sites on avg that occur together)1.60
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX1/MA0002.2/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CCACAGGCTCCA
AAACCACAGAN----
A C G T A C G T A C G T A G T C A G T C C G T A A G T C C G T A A C T G T A C G G T A C G A C T A T G C T G A C C G T A
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CCACAGGCTCCA
-CACAGN-----
A G T C A G T C C G T A A G T C C G T A A C T G T A C G G T A C G A C T A T G C T G A C C G T A
A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T

TFAP2C(var.2)/MA0814.2/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CCACAGGCTCCA
NNCGCCTCAGGCNN--
A C G T A C G T A C G T A C G T A G T C A G T C C G T A A G T C C G T A A C T G T A C G G T A C G A C T A T G C T G A C C G T A
T A G C A G T C T A G C A T C G A T G C A T G C A C G T A T G C T C G A T A C G A T C G T A G C G T A C T G A C A C G T A C G T

TFAP2A/MA0003.4/Jaspar

Match Rank:4
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CCACAGGCTCCA
ATTGCCTCAGGCCA--
A C G T A C G T A C G T A C G T A G T C A G T C C G T A A G T C C G T A A C T G T A C G G T A C G A C T A T G C T G A C C G T A
T G C A A G C T C A G T A T C G T G A C A G T C A G C T T A G C T C G A T A C G A T C G T A G C G T A C T G C A A C G T A C G T

ZBTB6/MA1581.1/Jaspar

Match Rank:5
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CCACAGGCTCCA----
---NNGGCTCAAGGNN
A G T C A G T C C G T A A G T C C G T A A C T G T A C G G T A C G A C T A T G C T G A C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C A C T G C T A G C A T G A G T C C A G T A T G C G T C A T C G A C A T G A T C G T C G A G T A C

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:6
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CCACAGGCTCCA
NWAACCACADNN----
A C G T A C G T A C G T A C G T A G T C A G T C C G T A A G T C C G T A A C T G T A C G G T A C G A C T A T G C T G A C C G T A
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCACAGGCTCCA
AAACCACAGC-----
A C G T A C G T A C G T A G T C A G T C C G T A A G T C C G T A A C T G T A C G G T A C G A C T A T G C T G A C C G T A
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T A C G T A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CCACAGGCTCCA
AGCCTCAGGCA---
A C G T A C G T A G T C A G T C C G T A A G T C C G T A A C T G T A C G G T A C G A C T A T G C T G A C C G T A
G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A A C G T A C G T A C G T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:CCACAGGCTCCA-----
-----GGCTCYAKCAYC
A G T C A G T C C G T A A G T C C G T A A C T G T A C G G T A C G A C T A T G C T G A C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CCACAGGCTCCA
NAAACCACAG------
A C G T A C G T A C G T A C G T A G T C A G T C C G T A A G T C C G T A A C T G T A C G G T A C G A C T A T G C T G A C C G T A
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T