Information for 16-AATGGCTTTTTG (Motif 20)

C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G
Reverse Opposite:
A G T C C G T A C G T A C G T A C G T A C G T A A C T G A G T C A G T C C G T A A C G T A C G T
p-value:1e-3
log p-value:-8.802e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif9.09%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets176.0 +/- 0.0bp
Average Position of motif in Background139.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0135.1_Hoxa3_2/Jaspar

Match Rank:1
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----AATGGCTTTTTG
CCTTAATNGNTTTT--
A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G
A G T C A T G C G A C T C G A T C G T A C G T A A C G T T C A G A C T G G C A T C G A T G A C T C A G T A G C T A C G T A C G T

PH0006.1_Barhl2/Jaspar

Match Rank:2
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----AATGGCTTTTTG
NNNTTAATTGGTTTTT-
A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G
C G A T C G A T T A G C G A C T C G A T C G T A C G T A C G A T G A C T C T A G C T A G A G C T G A C T C A G T C A G T C A G T A C G T

BARX2/MA1471.1/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AATGGCTTTTTG
NTAATGGTTTTN--
A C G T A C G T C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G
A T C G G C A T C T G A G T C A A G C T A C T G C T A G A C G T G C A T C G A T G C A T G A C T A C G T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AATGGCTTTTTG
-TTGACTTTT--
C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G
A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---AATGGCTTTTTG
GTTAATGGCC-----
A C G T A C G T A C G T C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T A C G T A C G T A C G T

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AATGGCTTTTTG
NTAATKGTTT----
A C G T A C G T C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G
A G T C G C A T T C G A T C G A C A G T C A T G T A C G G A C T G A C T A G C T A C G T A C G T A C G T A C G T

Isl1/MA1608.1/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----AATGGCTTTTTG
NNCTAATGGNN-----
A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G
A C G T T C A G G A T C C G A T C T G A C G T A G A C T C A T G C T A G T G C A G A C T A C G T A C G T A C G T A C G T A C G T

ONECUT3/MA0757.1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AATGGCTTTTTG
NTTATTGATTTTTT
A C G T A C G T C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G
C G T A C G A T G C A T G C T A G C A T A G C T C A T G C T G A G A C T G A C T C G A T G C A T G A C T A G C T

PH0005.1_Barhl1/Jaspar

Match Rank:9
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----AATGGCTTTTTG
GNNTTAATTGGTTGTT-
A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G
C A T G G C T A T G C A G A C T C G A T C G T A C G T A C G A T A G C T C T A G T A C G G A C T A G C T C A T G G A C T C A G T A C G T

ONECUT2/MA0756.1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AATGGCTTTTTG
ATTATCGATTTTTT
A C G T A C G T C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G
C G T A C G A T G C A T C G T A C G A T A G T C C A T G G T C A G A C T G A C T C G A T G C A T G A C T A G C T