Information for 2-GTGAATSTGCAG (Motif 2)

A C T G A C G T A C T G G T C A C G T A A G C T A T C G C G A T C T A G A T G C G T C A A T C G
Reverse Opposite:
T A G C A C G T A T C G A G T C C G T A A T G C C T G A A C G T A C G T T A G C C G T A A G T C
p-value:1e-7
log p-value:-1.705e+01
Information Content per bp:1.752
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif57.14%
Number of Background Sequences with motif616.2
Percentage of Background Sequences with motif0.58%
Average Position of motif in Targets83.8 +/- 55.8bp
Average Position of motif in Background98.1 +/- 87.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0170.1_Sox17_2/Jaspar

Match Rank:1
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----GTGAATSTGCAG
NTTNTATGAATGTGNNC
A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C T G G T C A C G T A A G C T A T C G C G A T C T A G A T G C G T C A A T C G
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

POU2F2/MA0507.1/Jaspar

Match Rank:2
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GTGAATSTGCAG--
-TTCATTTGCATAT
A C T G A C G T A C T G G T C A C G T A A G C T A T C G C G A T C T A G A T G C G T C A A T C G A C G T A C G T
A C G T G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------GTGAATSTGCAG
NNTNTCATGAATGT----
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C T G G T C A C G T A A G C T A T C G C G A T C T A G A T G C G T C A A T C G
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GTGAATSTGCAG---
ATGAATATTCATGAG
A C T G A C G T A C T G G T C A C G T A A G C T A T C G C G A T C T A G A T G C G T C A A T C G A C G T A C G T A C G T
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

PB0104.1_Zscan4_1/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GTGAATSTGCAG-----
NTNTATGTGCACATNNN
A C T G A C G T A C T G G T C A C G T A A G C T A T C G C G A T C T A G A T G C G T C A A T C G A C G T A C G T A C G T A C G T A C G T
C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A

MXI1/MA1108.2/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GTGAATSTGCAG
-NNCATGTGNN-
A C T G A C G T A C T G G T C A C G T A A G C T A T C G C G A T C T A G A T G C G T C A A T C G
A C G T T A C G T G A C G A T C C T G A A G C T T C A G G A C T C T A G A G C T G A T C A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GTGAATSTGCAG
ATGMATATDC--
A C T G A C G T A C T G G T C A C G T A A G C T A T C G C G A T C T A G A T G C G T C A A T C G
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GTGAATSTGCAG----
TNTAATTTGCATANNN
A C T G A C G T A C T G G T C A C G T A A G C T A T C G C G A T C T A G A T G C G T C A A T C G A C G T A C G T A C G T A C G T
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GTGAATSTGCAG----
TNTAATTTGCATACNA
A C T G A C G T A C T G G T C A C G T A A G C T A T C G C G A T C T A G A T G C G T C A A T C G A C G T A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----GTGAATSTGCAG
GAAAGTGAAAGT----
A C G T A C G T A C G T A C G T A C T G A C G T A C T G G T C A C G T A A G C T A T C G C G A T C T A G A T G C G T C A A T C G
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T A C G T A C G T