Information for 22-CTAMTTAGAT (Motif 30)

A T G C G C A T G T C A G T C A A C G T C A G T G T C A A C T G T G C A G A C T
Reverse Opposite:
C T G A A C G T G T A C A C G T G T C A T G C A A C G T A C G T C G T A A T C G
p-value:1e-2
log p-value:-5.142e+00
Information Content per bp:1.748
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif42.5
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets90.1 +/- 55.6bp
Average Position of motif in Background88.1 +/- 67.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)2.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0131.1_Pax4/Jaspar

Match Rank:1
Score:0.73
Offset:-5
Orientation:reverse strand
Alignment:-----CTAMTTAGAT--
NNGNGCTAATTAGNTNA
A C G T A C G T A C G T A C G T A C G T A T G C G C A T G T C A G T C A A C G T C A G T G T C A A C T G T G C A G A C T A C G T A C G T
C A T G G A C T A T C G T C A G C T A G A G T C C A G T C G T A C T G A A G C T G A C T G T C A C T A G G C A T A G C T A T G C C G T A

LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer

Match Rank:2
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CTAMTTAGAT
NGCTAATTAG--
A C G T A C G T A T G C G C A T G T C A G T C A A C G T C A G T G T C A A C T G T G C A G A C T
A T G C T A C G A G T C G A C T T G C A C T G A G A C T A C G T C T G A T C A G A C G T A C G T

PAX4/MA0068.2/Jaspar

Match Rank:3
Score:0.73
Offset:0
Orientation:forward strand
Alignment:CTAMTTAGAT
CTAATTAG--
A T G C G C A T G T C A G T C A A C G T C A G T G T C A A C T G T G C A G A C T
A G T C C A G T G C T A C G T A A C G T G C A T G T C A T C A G A C G T A C G T

ARGFX/MA1463.1/Jaspar

Match Rank:4
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CTAMTTAGAT
TTTAATTAGN-
A C G T A T G C G C A T G T C A G T C A A C G T C A G T G T C A A C T G T G C A G A C T
C A G T G A C T G A C T C T G A C G T A A C G T C A G T C T G A C T A G G T C A A C G T

PH0094.1_Lhx4/Jaspar

Match Rank:5
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CTAMTTAGAT---
TAAACTAATTAGCTTTG
A C G T A C G T A C G T A C G T A T G C G C A T G T C A G T C A A C G T C A G T G T C A A C T G T G C A G A C T A C G T A C G T A C G T
C A G T G T C A C G T A T C G A A T G C G A C T T C G A C T G A A G C T A G C T C T G A A T C G A T G C A C G T C G A T A C G T C T A G

PH0034.1_Gbx2/Jaspar

Match Rank:6
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----CTAMTTAGAT--
AANCGCTAATTAGCNNN
A C G T A C G T A C G T A C G T A C G T A T G C G C A T G T C A G T C A A C G T C A G T G T C A A C T G T G C A G A C T A C G T A C G T
G T C A T G C A G A C T A T G C T C A G A T G C A G C T G T C A G C T A C A G T A C G T C T G A T A C G A G T C A C T G A T G C G C A T

PH0089.1_Isx/Jaspar

Match Rank:7
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----CTAMTTAGAT--
ACTCCTAATTAGTCGT
A C G T A C G T A C G T A C G T A T G C G C A T G T C A G T C A A C G T C A G T G T C A A C T G T G C A G A C T A C G T A C G T
G C T A T G A C A G C T T G A C G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C G T A G T C T A C G C G A T

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:8
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CTAMTTAGAT
YTAATTAVHT
A T G C G C A T G T C A G T C A A C G T C A G T G T C A A C T G T G C A G A C T
A G T C G A C T T C G A C G T A A C G T A C G T C T G A T C G A G C A T G C A T

PH0155.1_Prrx2/Jaspar

Match Rank:9
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----CTAMTTAGAT--
NTTCGCTAATTAGCTNT
A C G T A C G T A C G T A C G T A C G T A T G C G C A T G T C A G T C A A C G T C A G T G T C A A C T G T G C A G A C T A C G T A C G T
G A C T G C A T G A C T G T A C T C A G G A T C A G C T C T G A C G T A G A C T A G C T C T G A C T A G A G T C C A G T A C G T G C A T

VSX2/MA0726.1/Jaspar

Match Rank:10
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CTAMTTAGAT
NTAATTAG--
A T G C G C A T G T C A G T C A A C G T C A G T G T C A A C T G T G C A G A C T
T G A C G A C T C G T A C T G A A C G T C G A T C T G A T C A G A C G T A C G T