Information for 3-CTCTTAAACG (Motif 25)

A G T C A C G T A G T C A C G T A C G T C G T A C G T A C G T A A G T C A C T G
Reverse Opposite:
A G T C A C T G A C G T A C G T A C G T C G T A C G T A A C T G C G T A A C T G
p-value:1e-3
log p-value:-8.375e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif5.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets162.0 +/- 0.0bp
Average Position of motif in Background87.8 +/- 82.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BARHL2/MA0635.1/Jaspar

Match Rank:1
Score:0.73
Offset:2
Orientation:forward strand
Alignment:CTCTTAAACG--
--GCTAAACGGT
A G T C A C G T A G T C A C G T A C G T C G T A C G T A C G T A A G T C A C T G A C G T A C G T
A C G T A C G T T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T

BARHL1/MA0877.2/Jaspar

Match Rank:2
Score:0.71
Offset:3
Orientation:forward strand
Alignment:CTCTTAAACG-
---CTAAACGG
A G T C A C G T A G T C A C G T A C G T C G T A C G T A C G T A A G T C A C T G A C G T
A C G T A C G T A C G T T A G C C G A T C G T A G T C A C G T A A G T C C T A G C A T G

PH0048.1_Hoxa13/Jaspar

Match Rank:3
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CTCTTAAACG--
AAACCTCGTAAAATTT
A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C G T A C G T C G T A C G T A C G T A A G T C A C T G A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

HOXC13/MA0907.1/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CTCTTAAACG
GCTCGTAAAAA
A C G T A G T C A C G T A G T C A C G T A C G T C G T A C G T A C G T A A G T C A C T G
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PH0068.1_Hoxc13/Jaspar

Match Rank:5
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CTCTTAAACG--
AAAGCTCGTAAAATTT
A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C G T A C G T C G T A C G T A C G T A A G T C A C T G A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

Nkx3-2/MA0122.3/Jaspar

Match Rank:6
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CTCTTAAACG
ATAACCACTTAAA--
A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C G T A C G T C G T A C G T A C G T A A G T C A C T G
C G T A C G A T C G T A C G T A T G A C G A T C G C T A G T A C G C A T G A C T G C T A C G T A G C T A A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CTCTTAAACG
AASCACTCAA---
A C G T A C G T A C G T A G T C A C G T A G T C A C G T A C G T C G T A C G T A C G T A A G T C A C T G
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T

MYBL2/MA0777.1/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CTCTTAAACG---
GACNGTTTAACGGTT
A C G T A C G T A G T C A C G T A G T C A C G T A C G T C G T A C G T A C G T A A G T C A C T G A C G T A C G T A C G T
C T A G C T G A T A G C T A G C A C T G C G A T A C G T G C A T C T G A G T C A G A T C A T C G A C T G G A C T G A C T

Nkx3-1/MA0124.2/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CTCTTAAACG
ACCACTTAA---
A C G T A C G T A G T C A C G T A G T C A C G T A C G T C G T A C G T A C G T A A G T C A C T G
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CTCTTAAACG
NSCACTYVAV--
A C G T A C G T A G T C A C G T A G T C A C G T A C G T C G T A C G T A C G T A A G T C A C T G
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T