Information for 24-AAACACTCAAGA (Motif 25)

C G T A C G T A C G T A A G T C C G T A A G T C A C G T A G T C C G T A C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T A C G T A C T G C G T A A C T G A C G T A C T G A C G T A C G T A C G T
p-value:1e-3
log p-value:-9.177e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets195.0 +/- 0.0bp
Average Position of motif in Background86.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX2-5/MA0063.2/Jaspar

Match Rank:1
Score:0.79
Offset:1
Orientation:forward strand
Alignment:AAACACTCAAGA
-ACCACTCAAAA
C G T A C G T A C G T A A G T C C G T A A G T C A C G T A G T C C G T A C G T A A C T G C G T A
A C G T T C G A T G A C G A T C C T G A G A T C G C A T G A T C C G T A G C T A T C G A G C T A

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.78
Offset:0
Orientation:forward strand
Alignment:AAACACTCAAGA
AGCCACTCAAG-
C G T A C G T A C G T A A G T C C G T A A G T C A C G T A G T C C G T A C G T A A C T G C G T A
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T

NKX2-2/MA1645.1/Jaspar

Match Rank:3
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-AAACACTCAAGA-
TAACCACTCAAGAA
A C G T C G T A C G T A C G T A A G T C C G T A A G T C A C G T A G T C C G T A C G T A A C T G C G T A A C G T
G A C T G C T A C G T A T G A C G A T C G C T A G T A C G C A T A T G C G T C A T C G A T C A G G C T A G C T A

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:4
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AAACACTCAAGA
AAGCACTTAA--
C G T A C G T A C G T A A G T C C G T A A G T C A C G T A G T C C G T A C G T A A C T G C G T A
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:5
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:AAACACTCAAGA
MRSCACTYAA--
C G T A C G T A C G T A A G T C C G T A A G T C A C G T A G T C C G T A C G T A A C T G C G T A
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.70
Offset:1
Orientation:forward strand
Alignment:AAACACTCAAGA
-RSCACTYRAG-
C G T A C G T A C G T A A G T C C G T A A G T C A C G T A G T C C G T A C G T A A C T G C G T A
A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AAACACTCAAGA
AASCACTCAA--
C G T A C G T A C G T A A G T C C G T A A G T C A C G T A G T C C G T A C G T A A C T G C G T A
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:8
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AAACACTCAAGA
-NSCACTYVAV-
C G T A C G T A C G T A A G T C C G T A A G T C A C G T A G T C C G T A C G T A A C T G C G T A
A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T

Nkx3-2/MA0122.3/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AAACACTCAAGA
ATAACCACTTAAA-
A C G T A C G T C G T A C G T A C G T A A G T C C G T A A G T C A C G T A G T C C G T A C G T A A C T G C G T A
C G T A C G A T C G T A C G T A T G A C G A T C G C T A G T A C G C A T G A C T G C T A C G T A G C T A A C G T

MSANTD3/MA1523.1/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AAACACTCAAGA
GTACACTCAC--
C G T A C G T A C G T A A G T C C G T A A G T C A C G T A G T C C G T A C G T A A C T G C G T A
A T C G A C G T T G C A G A T C C G T A G A T C G C A T G A T C G T C A G T A C A C G T A C G T