Information for 2-GTCTGATGGAGG (Motif 2)

A C T G A C G T A T G C A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C T G A T C G
Reverse Opposite:
A T G C A G T C A C G T A G T C A G T C C G T A A C G T A G T C C G T A A T C G C G T A A G T C
p-value:1e-18
log p-value:-4.239e+01
Information Content per bp:1.970
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets99.4 +/- 50.7bp
Average Position of motif in Background142.7 +/- 39.1bp
Strand Bias (log2 ratio + to - strand density)2.4
Multiplicity (# of sites on avg that occur together)3.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----GTCTGATGGAGG----
SMCAGTCWGAKGGAGGAGGC
A C G T A C G T A C G T A C G T A C T G A C G T A T G C A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C T G A T C G A C G T A C G T A C G T A C G T
A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:2
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GTCTGATGGAGG-
---TGATKGATGR
A C T G A C G T A T G C A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C T G A T C G A C G T
A C G T A C G T A C G T C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GTCTGATGGAGG--
--ATGATKGATGRC
A C T G A C G T A T G C A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C T G A T C G A C G T A C G T
A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

YY2/MA0748.2/Jaspar

Match Rank:4
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GTCTGATGGAGG--
---AGATGGCGGCG
A C T G A C G T A T G C A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C T G A T C G A C G T A C G T
A C G T A C G T A C G T G T C A T A C G T C G A A G C T T A C G C T A G G A T C A T C G T A C G G T A C T A C G

Isl1/MA1608.1/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GTCTGATGGAGG
NNCTAATGGNN-
A C T G A C G T A T G C A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C T G A T C G
A C G T T C A G G A T C C G A T C T G A C G T A G A C T C A T G C T A G T G C A G A C T A C G T

Wt1/MA1627.1/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GTCTGATGGAGG--
GNGTGGGGGAGGNG
A C T G A C G T A T G C A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C T G A T C G A C G T A C G T
T C A G A C G T T A C G G A C T T A C G C A T G T C A G T C A G T A C G G T C A A T C G C A T G T C A G C T A G

NEUROD1/MA1109.1/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GTCTGATGGAGG
GGACAGATGGCAG
A C G T A C T G A C G T A T G C A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C T G A T C G
C A T G T C A G T C G A T G A C C G T A A C T G T G C A G C A T C A T G A C T G A G T C T C G A T A C G

PBX1/MA0070.1/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GTCTGATGGAGG-
-TTTGATTGATGN
A C T G A C G T A T G C A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C T G A T C G A C G T
A C G T C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

PH0134.1_Pbx1/Jaspar

Match Rank:9
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GTCTGATGGAGG-
NNNNNATTGATGNGTGN
A C G T A C G T A C G T A C G T A C T G A C G T A T G C A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C T G A T C G A C G T
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GTCTGATGGAGG
TWGTCTGV------
A C G T A C G T A C T G A C G T A T G C A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C T G A T C G
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T