Information for 2-ACTGTGTTAATG (Motif 2)

C G T A A G T C A C G T A C T G A G C T A T C G A C G T A C G T C G T A C G T A C G A T A C T G
Reverse Opposite:
A G T C C G T A A C G T A C G T C G T A C G T A A T G C C T G A A G T C C G T A A C T G A C G T
p-value:1e-13
log p-value:-3.084e+01
Information Content per bp:1.947
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif26.67%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets72.2 +/- 27.5bp
Average Position of motif in Background151.0 +/- 34.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:1
Score:0.65
Offset:5
Orientation:forward strand
Alignment:ACTGTGTTAATG-
-----GKTAATGR
C G T A A G T C A C G T A C T G A G C T A T C G A C G T A C G T C G T A C G T A C G A T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:ACTGTGTTAATG
AAGGTGTKAA--
C G T A A G T C A C G T A C T G A G C T A T C G A C G T A C G T C G T A C G T A C G A T A C T G
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T A C G T

NKX6-3/MA1530.1/Jaspar

Match Rank:3
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:ACTGTGTTAATG--
-----TTTAATGAN
C G T A A G T C A C G T A C T G A G C T A T C G A C G T A C G T C G T A C G T A C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C G A T A G C T C T G A C G T A A C G T T C A G C T G A A T C G

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:ACTGTGTTAATG
-AGGTGTTAAT-
C G T A A G T C A C G T A C T G A G C T A T C G A C G T A C G T C G T A C G T A C G A T A C T G
A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:ACTGTGTTAATG---
-----GTTAATGGCC
C G T A A G T C A C G T A C T G A G C T A T C G A C G T A C G T C G T A C G T A C G A T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

NKX6-2/MA0675.1/Jaspar

Match Rank:6
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:ACTGTGTTAATG--
------TTAATTAN
C G T A A G T C A C G T A C T G A G C T A T C G A C G T A C G T C G T A C G T A C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G A C T C G T A C G T A C G A T C A G T C T G A T A C G

NKX6-1/MA0674.1/Jaspar

Match Rank:7
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:ACTGTGTTAATG--
------TTAATTAN
C G T A A G T C A C G T A C T G A G C T A T C G A C G T A C G T C G T A C G T A C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A G C T C G T A C G T A C A G T C A G T C T G A A T G C

HOXC4/MA1504.1/Jaspar

Match Rank:8
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:ACTGTGTTAATG--
------NTAATGAN
C G T A A G T C A C G T A C T G A G C T A T C G A C G T A C G T C G T A C G T A C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A G C T C G T A C G T A A G C T A C T G C T G A A G T C

ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer

Match Rank:9
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----ACTGTGTTAATG
NMMNBAAAGGGTTAA--
A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C T G A G C T A T C G A C G T A C G T C G T A C G T A C G A T A C T G
T A C G T G C A G T C A G C A T A C T G T G C A T C G A C T G A C A T G C T A G A C T G C A G T G A C T C G T A G T C A A C G T A C G T

HOXB4/MA1499.1/Jaspar

Match Rank:10
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:ACTGTGTTAATG--
------NTAATGAT
C G T A A G T C A C G T A C T G A G C T A T C G A C G T A C G T C G T A C G T A C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G C T G T C A C G T A A G C T A C T G C T G A A G C T