Information for 7-ATGCAGACATAA (Motif 10)

C G T A A C G T A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A A C G T A C T G A C G T A G T C A C G T A C T G A G T C C G T A A C G T
p-value:1e-4
log p-value:-1.059e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets102.0 +/- 0.0bp
Average Position of motif in Background22.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---ATGCAGACATAA--
CAAATCCAGACATCACA
A C G T A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C G T C G T A C G T A A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:ATGCAGACATAA
--CCAGACAG--
C G T A A C G T A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C G T C G T A C G T A
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:ATGCAGACATAA
--CCAGACRSVB
C G T A A C G T A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C G T C G T A C G T A
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--ATGCAGACATAA-
AGATGKDGAGATAAG
A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C G T C G T A C G T A A C G T
C G T A A C T G G T C A A C G T A T C G C A G T C T A G T C A G C G T A A C T G C G T A A C G T C G T A C T G A T A C G

PB0041.1_Mafb_1/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----ATGCAGACATAA-
AAATTTGCTGACTTAGA
A C G T A C G T A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C G T C G T A C G T A A C G T
G C T A C T G A C G T A G C A T C A G T G C A T C A T G G T A C G C A T C A T G C G T A A G T C C G A T G C A T C T G A C T A G G T A C

POU5F1/MA1115.1/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--ATGCAGACATAA
ATATGCAAATT---
A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C G T C G T A C G T A
C G T A G C A T T C G A G A C T C T A G A G T C G C T A C T G A G C T A G C A T C A G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:ATGCAGACATAA
--BCAGACWA--
C G T A A C G T A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C G T C G T A C G T A
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:8
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------ATGCAGACATAA
TNNATTATGCATANNTT-
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C G T C G T A C G T A
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:ATGCAGACATAA
-TGCTGACTCA-
C G T A A C G T A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C G T C G T A C G T A
A C G T G A C T C T A G G A T C C A G T A C T G C T G A A T G C G C A T A T G C C T G A A C G T

MAFF/MA0495.3/Jaspar

Match Rank:10
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------ATGCAGACATAA
NNNAAAATGCTGACTN--
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C G T C G T A C G T A
C G T A C G T A C G T A C G T A C G T A C G T A G C T A G C A T T C A G G T A C G C A T C A T G G C T A A T G C G C A T G A C T A C G T A C G T