Information for 2-CGTCATGAAT (Motif 3)

A G T C A C T G A C G T A G T C C G T A A C G T A C T G C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T A G T C C G T A A C G T A C T G C G T A A G T C A C T G
p-value:1e-4
log p-value:-1.050e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets94.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--CGTCATGAAT--
NNTNTCATGAATGT
A C G T A C G T A G T C A C T G A C G T A G T C C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

PH0073.1_Hoxc9/Jaspar

Match Rank:2
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CGTCATGAAT---
GGAGGTCATTAATTAT
A C G T A C G T A C G T A G T C A C T G A C G T A G T C C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T A C G T
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

PH0150.1_Pou4f3/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CGTCATGAAT----
GACNTCATTAATAANN
A C G T A C G T A G T C A C T G A C G T A G T C C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C T A G C T G A T G A C G A T C C A G T G T A C C G T A C G A T C G A T C G T A C T G A C G A T C G T A G T C A A G T C C G A T

Atf1/MA0604.1/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CGTCATGAAT
TACGTCAT----
A C G T A C G T A G T C A C T G A C G T A G T C C G T A A C G T A C T G C G T A C G T A A C G T
A G C T C T G A A G T C A C T G A C G T T G A C C G T A A G C T A C G T A C G T A C G T A C G T

Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CGTCATGAAT
GGYAATGAAA
A G T C A C T G A C G T A G T C C G T A A C G T A C T G C G T A C G T A A C G T
C T A G T A C G G A C T T G C A T G C A C G A T T A C G C T G A T C G A C T G A

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CGTCATGAAT
ACGTCA-----
A C G T A G T C A C T G A C G T A G T C C G T A A C G T A C T G C G T A C G T A A C G T
C T G A A G T C T C A G A C G T G T A C C G T A A C G T A C G T A C G T A C G T A C G T

FOSL1::JUND(var.2)/MA1143.1/Jaspar

Match Rank:7
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----CGTCATGAAT
GTTACGTCAT----
A C G T A C G T A C G T A C G T A G T C A C T G A C G T A G T C C G T A A C G T A C T G C G T A C G T A A C G T
C T A G G C A T A C G T C T G A G T A C T C A G C A G T T A G C T C G A A G C T A C G T A C G T A C G T A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:8
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CGTCATGAAT-
-GTCGTAAAAT
A G T C A C T G A C G T A G T C C G T A A C G T A C T G C G T A C G T A A C G T A C G T
A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CGTCATGAAT
GGCMATGAAA
A G T C A C T G A C G T A G T C C G T A A C G T A C T G C G T A C G T A A C G T
C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A

FOS::JUN(var.2)/MA1126.1/Jaspar

Match Rank:10
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CGTCATGAAT-
GATGACGTCATCATTT
A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T A G T C C G T A A C G T A C T G C G T A C G T A A C G T A C G T
C T A G T C G A A G C T A C T G C T G A G T A C T C A G C G A T G A T C C T G A A G C T G T A C G T C A C A G T C A G T A G C T