Information for 2-ACGCGTCT (Motif 29)

C G T A A G T C A C T G A G T C A C T G A C G T A G T C A C G T
Reverse Opposite:
C G T A A C T G C G T A A G T C A C T G A G T C A C T G A C G T
p-value:1e-2
log p-value:-5.818e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif24.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets117.0 +/- 0.0bp
Average Position of motif in Background77.4 +/- 66.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:ACGCGTCT--
VBSYGTCTGG
C G T A A G T C A C T G A G T C A C T G A C G T A G T C A C G T A C G T A C G T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

HES1/MA1099.2/Jaspar

Match Rank:2
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---ACGCGTCT
GNCACGTGCC-
A C G T A C G T A C G T C G T A A G T C A C T G A G T C A C T G A C G T A G T C A C G T
T A C G T A G C G T A C C T G A A G T C C T A G G A C T C A T G G T A C T G A C A C G T

PROX1/MA0794.1/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--ACGCGTCT--
TAAGGCGTCTTG
A C G T A C G T C G T A A G T C A C T G A G T C A C T G A C G T A G T C A C G T A C G T A C G T
A G C T T C G A G T C A T C A G C T A G G T A C C T A G A G C T G A T C C G A T G A C T T C A G

PB0147.1_Max_2/Jaspar

Match Rank:4
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----ACGCGTCT-
GTGCCACGCGACTG
A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C T G A G T C A C T G A C G T A G T C A C G T A C G T
A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-ACGCGTCT
CACGCA---
A C G T C G T A A G T C A C T G A G T C A C T G A C G T A G T C A C G T
A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.63
Offset:2
Orientation:forward strand
Alignment:ACGCGTCT--
--CTGTCTGG
C G T A A G T C A C T G A G T C A C T G A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

HEY2/MA0649.1/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---ACGCGTCT
GGCACGTGNC-
A C G T A C G T A C G T C G T A A G T C A C T G A G T C A C T G A C G T A G T C A C G T
A T C G T C A G T A G C C T G A A T G C A C T G A G C T A C T G A G C T G A T C A C G T

HES2/MA0616.2/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---ACGCGTCT
GGCACGTGCC-
A C G T A C G T A C G T C G T A A G T C A C T G A G T C A C T G A C G T A G T C A C G T
T A C G T C A G A G T C C T G A A G T C C T A G A G C T A C T G G T A C T A G C A C G T

HEY1/MA0823.1/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---ACGCGTCT
GACACGTGCC-
A C G T A C G T A C G T C G T A A G T C A C T G A G T C A C T G A C G T A G T C A C G T
T A C G T C G A A G T C T C G A A G T C A T C G A G C T C T A G A G T C T G A C A C G T

CLOCK/MA0819.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-ACGCGTCT-
AACACGTGTT
A C G T C G T A A G T C A C T G A G T C A C T G A C G T A G T C A C G T A C G T
C T G A T C G A G T A C T C G A G A T C C T A G A C G T A C T G A G C T G A C T