Information for 3-WTWMWYCCACTA (Motif 4)

C G T A A C G T G C A T G T A C C G T A A G T C A G T C A G T C C G T A A G T C A C G T C G T A
Reverse Opposite:
A C G T C G T A A C T G A C G T A C T G A C T G C T A G C G A T A C T G C G A T C G T A C G A T
p-value:1e-5
log p-value:-1.217e+01
Information Content per bp:1.839
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif22.22%
Number of Background Sequences with motif29.6
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets73.7 +/- 75.9bp
Average Position of motif in Background96.2 +/- 97.8bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF354C/MA0130.1/Jaspar

Match Rank:1
Score:0.67
Offset:4
Orientation:forward strand
Alignment:WTWMWYCCACTA
----ATCCAC--
C G T A A C G T G C A T G T A C C G T A A G T C A G T C A G T C C G T A A G T C A C G T C G T A
A C G T A C G T A C G T A C G T T G C A G C A T A G T C A G T C C G T A A T G C A C G T A C G T

Isl1/MA1608.1/Jaspar

Match Rank:2
Score:0.63
Offset:4
Orientation:forward strand
Alignment:WTWMWYCCACTA---
----ATCCATTAGCA
C G T A A C G T G C A T G T A C C G T A A G T C A G T C A G T C C G T A A G T C A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A A C G T G A T C G T A C C T G A G C A T G A C T G C T A C T A G A G T C T G C A

PB0114.1_Egr1_2/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:WTWMWYCCACTA----
NNAGTCCCACTCNNNN
C G T A A C G T G C A T G T A C C G T A A G T C A G T C A G T C C G T A A G T C A C G T C G T A A C G T A C G T A C G T A C G T
T G A C G A T C C G T A C T A G G C A T G T A C G A T C G A T C G T C A A G T C A G C T G A T C T A G C C T A G T G A C T G C A

ZKSCAN1/MA1585.1/Jaspar

Match Rank:4
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:WTWMWYCCACTA-
---CACCTACTAT
C G T A A C G T G C A T G T A C C G T A A G T C A G T C A G T C C G T A A G T C A C G T C G T A A C G T
A C G T A C G T A C G T A T G C T C G A G T A C T A G C A C G T C G T A G A T C A C G T T C G A A G C T

PH0121.1_Obox1/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----WTWMWYCCACTA-
NTAGTTAATCCCCTTAN
A C G T A C G T A C G T A C G T C G T A A C G T G C A T G T A C C G T A A G T C A G T C A G T C C G T A A G T C A C G T C G T A A C G T
C T A G C G A T G C T A A C T G G C A T C G A T C G T A C T G A A C G T G T A C A G T C G A T C G A T C A G C T A G C T G C T A G C T A

ZNF75D/MA1601.1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:WTWMWYCCACTA
--TTTCCCACAN
C G T A A C G T G C A T G T A C C G T A A G T C A G T C A G T C C G T A A G T C A C G T C G T A
A C G T A C G T G A C T A G C T C A G T T A G C G T A C A G T C C T G A A G T C G T C A A G C T

NKX2-2/MA1645.1/Jaspar

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:WTWMWYCCACTA-----
---TAACCACTCAAGAA
C G T A A C G T G C A T G T A C C G T A A G T C A G T C A G T C C G T A A G T C A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T G C T A C G T A T G A C G A T C G C T A G T A C G C A T A T G C G T C A T C G A T C A G G C T A G C T A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:8
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:WTWMWYCCACTA--
----MRSCACTYAA
C G T A A C G T G C A T G T A C C G T A A G T C A G T C A G T C C G T A A G T C A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

NKX2-3/MA0672.1/Jaspar

Match Rank:9
Score:0.58
Offset:5
Orientation:forward strand
Alignment:WTWMWYCCACTA---
-----ACCACTTGAA
C G T A A C G T G C A T G T A C C G T A A G T C A G T C A G T C C G T A A G T C A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

PH0115.1_Nkx2-6/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:WTWMWYCCACTA------
--TAAGCCACTTAACATT
C G T A A C G T G C A T G T A C C G T A A G T C A G T C A G T C C G T A A G T C A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T