Information for 13-GGGTGTCCTA (Motif 31)

A C T G A C T G A C T G A C G T A C T G A C G T A G T C A G T C A C G T C G T A
Reverse Opposite:
A C G T C G T A A C T G A C T G C G T A A G T C C G T A A G T C A G T C A G T C
p-value:1e-3
log p-value:-7.010e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif7.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets21.0 +/- 0.0bp
Average Position of motif in Background116.7 +/- 102.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0164.1_Six4/Jaspar

Match Rank:1
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----GGGTGTCCTA---
TNNNNGGTGTCATNTNT
A C G T A C G T A C G T A C G T A C T G A C T G A C T G A C G T A C T G A C G T A G T C A G T C A C G T C G T A A C G T A C G T A C G T
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T

NR4A2/MA0160.1/Jaspar

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GGGTGTCCTA
--GTGACCTT
A C T G A C T G A C T G A C G T A C T G A C G T A G T C A G T C A C G T C G T A
A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T

Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer

Match Rank:3
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GGGTGTCCTA
YSTGGGTGGTCT-
A C G T A C G T A C G T A C T G A C T G A C T G A C G T A C T G A C G T A G T C A G T C A C G T C G T A
A G T C A T C G G C A T C A T G A C T G A T C G C G A T C T A G A C T G A G C T T G A C G A C T A C G T

PB0025.1_Glis2_1/Jaspar

Match Rank:4
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----GGGTGTCCTA-
NTNTGGGGGGTCNNNA
A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C T G A C G T A C T G A C G T A G T C A G T C A C G T C G T A A C G T
G T A C G A C T T C A G A C G T C T A G C T A G C A T G C A T G A C T G A C T G A C G T T G A C A T C G C G T A C G A T C T G A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GGGTGTCCTA-
---TGACCTYA
A C T G A C T G A C T G A C G T A C T G A C G T A G T C A G T C A C G T C G T A A C G T
A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

PB0133.1_Hic1_2/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GGGTGTCCTA----
GGGTGTGCCCAAAAGG
A C G T A C G T A C T G A C T G A C T G A C G T A C T G A C G T A G T C A G T C A C G T C G T A A C G T A C G T A C G T A C G T
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

RORC/MA1151.1/Jaspar

Match Rank:7
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GGGTGTCCTA-----
---TGACCTANTTAN
A C T G A C T G A C T G A C G T A C T G A C G T A G T C A G T C A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T T C A G T G C A G A T C G T A C A G C T T G C A T A G C G C A T C G A T G C T A G A C T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:8
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GGGTGTCCTA---
---TGACCTARTT
A C T G A C T G A C T G A C G T A C T G A C G T A G T C A G T C A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:9
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GGGTGTCCTA---
---TGACCTARTT
A C T G A C T G A C T G A C G T A C T G A C G T A G T C A G T C A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

TBX3/MA1566.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GGGTGTCCTA
GAGGTGTGAA-
A C G T A C T G A C T G A C T G A C G T A C T G A C G T A G T C A G T C A C G T C G T A
C T A G C T G A T A C G T A C G G A C T A C T G A G C T A T C G C T G A T C G A A C G T