Information for 2-TCTAGCTCAG (Motif 7)

C G A T G T A C A C G T G T C A A T C G A G T C A C G T A T G C G T C A A C T G
Reverse Opposite:
A G T C A C G T A T C G C G T A A C T G A T G C A C G T G T C A A C T G C G T A
p-value:1e-4
log p-value:-1.078e+01
Information Content per bp:1.918
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif23.08%
Number of Background Sequences with motif222.5
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets90.3 +/- 72.1bp
Average Position of motif in Background100.2 +/- 73.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA/MA0071.1/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TCTAGCTCAG
ATCAAGGTCA-
A C G T C G A T G T A C A C G T G T C A A T C G A G T C A C G T A T G C G T C A A C T G
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TCTAGCTCAG---
AAWCTAGGTCARDNN
A C G T A C G T C G A T G T A C A C G T G T C A A T C G A G T C A C G T A T G C G T C A A C T G A C G T A C G T A C G T
C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A

PB0090.1_Zbtb12_1/Jaspar

Match Rank:3
Score:0.60
Offset:-7
Orientation:forward strand
Alignment:-------TCTAGCTCAG
CTAAGGTTCTAGATCAC
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T G T A C A C G T G T C A A T C G A G T C A C G T A T G C G T C A A C T G
A T G C A C G T G C T A T C G A A C T G C T A G C G A T C G A T A G T C A G C T T C G A C T A G T C G A G C A T A G T C T G C A A G T C

RORA(var.2)/MA0072.1/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----TCTAGCTCAG
TATAAGTAGGTCAA
A C G T A C G T A C G T A C G T C G A T G T A C A C G T G T C A A T C G A G T C A C G T A T G C G T C A A C T G
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

ESRRA/MA0592.3/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TCTAGCTCAG-
GCTCAAGGTCACA
A C G T A C G T C G A T G T A C A C G T G T C A A T C G A G T C A C G T A T G C G T C A A C T G A C G T
C A T G A G T C G A C T T A G C C T G A T C G A C A T G C A T G C G A T A G T C C T G A G A T C T C G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TCTAGCTCAG
AAYTAGGTCA-
A C G T C G A T G T A C A C G T G T C A A T C G A G T C A C G T A T G C G T C A A C T G
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TCTAGCTCAG
AAYTAGGTCA-
A C G T C G A T G T A C A C G T G T C A A T C G A G T C A C G T A T G C G T C A A C T G
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T

ESRRB/MA0141.3/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TCTAGCTCAG-
TCAAGGTCATA
C G A T G T A C A C G T G T C A A T C G A G T C A C G T A T G C G T C A A C T G A C G T
G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TCTAGCTCAG
TCAAGGTCAN
C G A T G T A C A C G T G T C A A T C G A G T C A C G T A T G C G T C A A C T G
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TCTAGCTCAG
---NGCTN--
C G A T G T A C A C G T G T C A A T C G A G T C A C G T A T G C G T C A A C T G
A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T