Information for 23-CAAGACACAGGC (Motif 24)

A G T C C G T A C G T A A C T G C G T A A G T C C G T A A G T C C G T A A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C A C G T A C T G A C G T A C T G A C G T A G T C A C G T A C G T A C T G
p-value:1e-3
log p-value:-8.455e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets157.0 +/- 0.0bp
Average Position of motif in Background82.3 +/- 13.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CAAGACACAGGC
-AAAACAAAGG-
A G T C C G T A C G T A A C T G C G T A A G T C C G T A A G T C C G T A A C T G A C T G A G T C
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T

PRDM4/MA1647.1/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CAAGACACAGGC
-NAGAAACAGNN
A G T C C G T A C G T A A C T G C G T A A G T C C G T A A G T C C G T A A C T G A C T G A G T C
A C G T C G A T C G T A C A T G C G T A T C G A C G T A A G T C G C T A A T C G G T C A G A T C

Smad4/MA1153.1/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CAAGACACAGGC
TCTAGACA-----
A C G T A G T C C G T A C G T A A C T G C G T A A G T C C G T A A G T C C G T A A C T G A C T G A G T C
A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T A C G T A C G T A C G T A C G T

FOXH1/MA0479.1/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CAAGACACAGGC
TCCAATCCACA---
A C G T A C G T A G T C C G T A C G T A A C T G C G T A A G T C C G T A A G T C C G T A A C T G A C T G A G T C
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:CAAGACACAGGC
-----CACAGN-
A G T C C G T A C G T A A C T G C G T A A G T C C G T A A G T C C G T A A C T G A C T G A G T C
A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CAAGACACAGGC
-AAACCACAGAN
A G T C C G T A C G T A A C T G C G T A A G T C C G T A A G T C C G T A A C T G A C T G A G T C
A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

Sox6/MA0515.1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CAAGACACAGGC
-AAAACAATGG-
A G T C C G T A C G T A A C T G C G T A A G T C C G T A A G T C C G T A A C T G A C T G A G T C
A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T

PB0121.1_Foxj3_2/Jaspar

Match Rank:8
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CAAGACACAGGC
AACACCAAAACAAAGGA
A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G C G T A A G T C C G T A A G T C C G T A A C T G A C T G A G T C
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CAAGACACAGGC-
--AGCCTCAGGCA
A G T C C G T A C G T A A C T G C G T A A G T C C G T A A G T C C G T A A C T G A C T G A G T C A C G T
A C G T A C G T G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A

Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CAAGACACAGGC
BMRVACAAWGGV
A G T C C G T A C G T A A C T G C G T A A G T C C G T A A G T C C G T A A C T G A C T G A G T C
A T G C T G A C C T G A T A C G C G T A A G T C C G T A C G T A C G T A C T A G T C A G T G C A