Information for 2-GGCCAATG (Motif 8)

A T C G A C T G A T G C G T A C G C T A C T G A G A C T C T A G
Reverse Opposite:
A G T C C T G A A G C T C G A T A C T G T A C G G T A C A T G C
p-value:1e-5
log p-value:-1.178e+01
Information Content per bp:1.692
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif37.50%
Number of Background Sequences with motif557.3
Percentage of Background Sequences with motif0.52%
Average Position of motif in Targets113.7 +/- 19.8bp
Average Position of motif in Background102.2 +/- 88.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFYB/MA0502.2/Jaspar

Match Rank:1
Score:0.89
Offset:-2
Orientation:reverse strand
Alignment:--GGCCAATG--
NTGGCCAATGAG
A C G T A C G T A T C G A C T G A T G C G T A C G C T A C T G A G A C T C T A G A C G T A C G T
A G T C A C G T C T A G T C A G G A T C G T A C G T C A T C G A C G A T T A C G T C G A T A C G

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GGCCAATG--
AGCCAATCGG
A T C G A C T G A T G C G T A C G C T A C T G A G A C T C T A G A C G T A C G T
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GGCCAATG-
ACTAGCCAATCA
A C G T A C G T A C G T A T C G A C T G A T G C G T A C G C T A C T G A G A C T C T A G A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GGCCAATG
CGTGCCAAG-
A C G T A C G T A T C G A C T G A T G C G T A C G C T A C T G A G A C T C T A G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GGCCAATG-
AAGGCAAGTGT
A C G T A C G T A T C G A C T G A T G C G T A C G C T A C T G A G A C T C T A G A C G T
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GGCCAATG----
NAGGTCANTGACCT
A C G T A C G T A T C G A C T G A T G C G T A C G C T A C T G A G A C T C T A G A C G T A C G T A C G T A C G T
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

NR1H4::RXRA/MA1146.1/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GGCCAATG-----
NAGGTCAATGACCTC
A C G T A C G T A T C G A C T G A T G C G T A C G C T A C T G A G A C T C T A G A C G T A C G T A C G T A C G T A C G T
T C G A T C G A C A T G C A T G A C G T A G T C T C G A C G T A G A C T T C A G T G C A G T A C G A T C A G C T A G T C

Sox17/MA0078.1/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GGCCAATG--
-GACAATGNN
A T C G A C T G A T G C G T A C G C T A C T G A G A C T C T A G A C G T A C G T
A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

NR4A2::RXRA/MA1147.1/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GGCCAATG-----
GGGGTCAATGACCTN
A C G T A C G T A T C G A C T G A T G C G T A C G C T A C T G A G A C T C T A G A C G T A C G T A C G T A C G T A C G T
T C A G T C A G C A T G C A T G A C G T A T G C T C G A G C T A A G C T T C A G T C G A G T A C G T A C A G C T A G T C

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GGCCAATG
GGTGCCAAGT
A C G T A C G T A T C G A C T G A T G C G T A C G C T A C T G A G A C T C T A G
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T