Information for 11-AAGCCATCAGGG (Motif 11)

C G T A C G T A A C T G A G T C A G T C C G T A A C G T A G T C C G T A C T A G A C T G A C T G
Reverse Opposite:
A G T C A G T C A G T C A C G T A C T G C G T A A C G T A C T G A C T G G T A C A C G T A C G T
p-value:1e-10
log p-value:-2.450e+01
Information Content per bp:1.936
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.3 +/- 42.9bp
Average Position of motif in Background139.6 +/- 45.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0135.1_Hoxa3_2/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AAGCCATCAGGG
AAAAACCATTAAGG
A C G T A C G T C G T A C G T A A C T G A G T C A G T C C G T A A C G T A G T C C G T A C T A G A C T G A C T G
T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-AAGCCATCAGGG
YCATCMATCA---
A C G T C G T A C G T A A C T G A G T C A G T C C G T A A C G T A G T C C G T A C T A G A C T G A C T G
G A T C G T A C C T G A A C G T G A T C G T C A C T G A A C G T G A T C G C T A A C G T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AAGCCATCAGGG
GYCATCMATCAT--
A C G T A C G T C G T A C G T A A C T G A G T C A G T C C G T A A C G T A G T C C G T A C T A G A C T G A C T G
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AAGCCATCAGGG
-GGCCATTAAC-
C G T A C G T A A C T G A G T C A G T C C G T A A C G T A G T C C G T A C T A G A C T G A C T G
A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AAGCCATCAGGG
AAACMATTAN--
C G T A C G T A A C T G A G T C A G T C C G T A A C G T A G T C C G T A C T A G A C T G A C T G
T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G A C G T A C G T

Isl1/MA1608.1/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AAGCCATCAGGG
-ATCCATTAGCA
C G T A C G T A A C T G A G T C A G T C C G T A A C G T A G T C C G T A C T A G A C T G A C T G
A C G T C T G A A C G T G A T C G T A C C T G A G C A T G A C T G C T A C T A G A G T C T G C A

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AAGCCATCAGGG--
-TGCCCTNAGGGCA
C G T A C G T A A C T G A G T C A G T C C G T A A C G T A G T C C G T A C T A G A C T G A C T G A C G T A C G T
A C G T G C A T A T C G A G T C A G T C A G T C A G C T T G A C T C G A T C A G A C T G A C T G A T G C C G T A

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AAGCCATCAGGG
-RGCAATNAAA-
C G T A C G T A A C T G A G T C A G T C C G T A A C G T A G T C C G T A C T A G A C T G A C T G
A C G T C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A A C G T

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AAGCCATCAGGG-
--CACAGCAGGGG
C G T A C G T A A C T G A G T C A G T C C G T A A C G T A G T C C G T A C T A G A C T G A C T G A C G T
A C G T A C G T T A G C T C G A A G T C T G C A T A C G A G T C T C G A A T C G A C T G T A C G T C A G

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AAGCCATCAGGG--
-TGCCCTGAGGGCA
C G T A C G T A A C T G A G T C A G T C C G T A A C G T A G T C C G T A C T A G A C T G A C T G A C G T A C G T
A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A