Information for 10-TCCATCAGTGAT (Motif 11)

A C G T A G T C A G T C C G T A A C G T A G T C C G T A A T C G A C G T A C T G C T G A A C G T
Reverse Opposite:
C G T A A G C T A G T C C G T A A T G C A C G T A C T G C G T A A C G T A C T G A C T G C G T A
p-value:1e-11
log p-value:-2.618e+01
Information Content per bp:1.958
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets94.9 +/- 42.7bp
Average Position of motif in Background144.2 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:1
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TCCATCAGTGAT
YCATCMATCA-----
A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A G T C C G T A A T C G A C G T A C T G C T G A A C G T
G A T C G T A C C T G A A C G T G A T C G T C A C T G A A C G T G A T C G C T A A C G T A C G T A C G T A C G T A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TCCATCAGTGAT--
TCACCCATCAATAAACA
A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A G T C C G T A A T C G A C G T A C T G C T G A A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:3
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----TCCATCAGTGAT
GYCATCMATCAT----
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A G T C C G T A A T C G A C G T A C T G C T G A A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T A C G T A C G T

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TCCATCAGTGAT
ATTGCATCAT----
A C G T A C G T A C G T A G T C A G T C C G T A A C G T A G T C C G T A A T C G A C G T A C T G C T G A A C G T
T C G A G C A T A C G T C T A G G T A C T C G A G C A T T G A C T C G A A C G T A C G T A C G T A C G T A C G T

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TCCATCAGTGAT
ATTGCATCAK----
A C G T A C G T A C G T A G T C A G T C C G T A A C G T A G T C C G T A A T C G A C G T A C T G C T G A A C G T
T C G A A C G T A C G T C T A G A G T C T C G A G C A T G T A C C T G A A C G T A C G T A C G T A C G T A C G T

Isl1/MA1608.1/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TCCATCAGTGAT
ATCCATTAGCA--
A C G T A C G T A G T C A G T C C G T A A C G T A G T C C G T A A T C G A C G T A C T G C T G A A C G T
C T G A A C G T G A T C G T A C C T G A G C A T G A C T G C T A C T A G A G T C T G C A A C G T A C G T

NEUROD1/MA1109.1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TCCATCAGTGAT
NNNCCATCTGTNN-
A C G T A C G T A C G T A G T C A G T C C G T A A C G T A G T C C G T A A T C G A C G T A C T G C T G A A C G T
A T G C A G C T T C A G T G A C G T A C C G T A A C G T T G A C G C A T A C T G A G C T A G T C G T A C A C G T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TCCATCAGTGAT--
NNNNTGCCAGTGATTG
A C G T A C G T A C G T A G T C A G T C C G T A A C G T A G T C C G T A A T C G A C G T A C T G C T G A A C G T A C G T A C G T
G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G

NEUROG2(var.2)/MA1642.1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TCCATCAGTGAT
NNCCATCTGTNNN
A C G T A C G T A G T C A G T C C G T A A C G T A G T C C G T A A T C G A C G T A C T G C T G A A C G T
A C G T T C A G T G A C G T A C C T G A A C G T T G A C A G C T A T C G A C G T A G C T G A T C G A T C

MEIS1(var.2)/MA1639.1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TCCATCAGTGAT-
GTCATCAATCATT
A C G T A G T C A G T C C G T A A C G T A G T C C G T A A T C G A C G T A C T G C T G A A C G T A C G T
C T A G G A C T G A T C C T G A C A G T G T A C G T C A G C T A G C A T G T A C G C T A G C A T G C A T