Information for 21-CTAGTCCAAA (Motif 36)

A G T C A C G T C G T A A C T G A C G T A G T C A G T C C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T A C T G A C T G C G T A A G T C A C G T C G T A A C T G
p-value:1e-3
log p-value:-7.009e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif11.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets121.0 +/- 0.0bp
Average Position of motif in Background105.0 +/- 91.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4A(var.2)/MA1494.1/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CTAGTCCAAA------
-GGGTCCAAAGGTCAC
A G T C A C G T C G T A A C T G A C G T A G T C A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T C A G C T A G C A T G C A G T G A T C G A T C C T G A C G T A C T G A A C T G C A T G A C G T A G T C C T G A G T A C

PB0134.1_Hnf4a_2/Jaspar

Match Rank:2
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CTAGTCCAAA--
GGCAAAAGTCCAATAA
A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C T G A C G T A G T C A G T C C G T A C G T A C G T A A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

PB0200.1_Zfp187_2/Jaspar

Match Rank:3
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CTAGTCCAAA-
GAGCCCTTGTCCCTAA
A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C T G A C G T A G T C A G T C C G T A C G T A C G T A A C G T
A C T G C T G A C T A G G T A C A G T C A G T C G A C T A G C T T C A G G A C T G A T C A G T C G T A C G A C T G C A T T C A G

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTAGTCCAAA
GCTAATCC---
A C G T A G T C A C G T C G T A A C T G A C G T A G T C A G T C C G T A C G T A C G T A
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T

PITX1/MA0682.2/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CTAGTCCAAA
CTAATCCC--
A G T C A C G T C G T A A C T G A C G T A G T C A G T C C G T A C G T A C G T A
G A T C A C G T C G T A C G T A A C G T G T A C A G T C G T A C A C G T A C G T

OTX2/MA0712.2/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CTAGTCCAAA
NNCTAATCCCNN
A C G T A C G T A G T C A C G T C G T A A C T G A C G T A G T C A G T C C G T A C G T A C G T A
G C A T G C A T G A T C G C A T C G T A G T C A C A G T G A T C G A T C G A T C G C A T C G A T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CTAGTCCAAA--
--ACATCAAAGG
A G T C A C G T C G T A A C T G A C G T A G T C A G T C C G T A C G T A C G T A A C G T A C G T
A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

PITX2/MA1547.1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTAGTCCAAA
ATAATCCC--
A G T C A C G T C G T A A C T G A C G T A G T C A G T C C G T A C G T A C G T A
G T C A C G A T C T G A C G T A A C G T A G T C A G T C T G A C A C G T A C G T

RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CTAGTCCAAA
CAAAGKTCAA-
A C G T A G T C A C G T C G T A A C T G A C G T A G T C A G T C C G T A C G T A C G T A
G A T C G T C A T C G A T C G A C T A G C A T G A G C T G T A C T C G A T C G A A C G T

HNF4A/MA0114.4/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CTAGTCCAAA
TCCAAAGTCCAAA
A C G T A C G T A C G T A G T C A C G T C G T A A C T G A C G T A G T C A G T C C G T A C G T A C G T A
C A G T G A T C G A T C T G C A T C G A C T G A A C T G C A G T G A T C G A T C C G T A C T G A C T G A