Information for 13-GGATCAATGG (Motif 30)

A C T G A C T G C G T A A C G T A G T C C G T A C G T A A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A A C G T A C G T A C T G C G T A A C G T A G T C A G T C
p-value:1e-2
log p-value:-6.755e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif11.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets23.0 +/- 0.0bp
Average Position of motif in Background104.7 +/- 72.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX9/MA0077.1/Jaspar

Match Rank:1
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:GGATCAATGG
-GAACAATGG
A C T G A C T G C G T A A C G T A G T C C G T A C G T A A C G T A C T G A C T G
A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:2
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--GGATCAATGG
HNRAATCAAT--
A C G T A C G T A C T G A C T G C G T A A C G T A G T C C G T A C G T A A C G T A C T G A C T G
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:3
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GGATCAATGG
DGATCRATAN
A C T G A C T G C G T A A C G T A G T C C G T A C G T A A C G T A C T G A C T G
C T A G C T A G C T G A A C G T A G T C C T A G C G T A A C G T G T C A G A T C

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:GGATCAATGG-
-GAACAATGGN
A C T G A C T G C G T A A C G T A G T C C G T A C G T A A C G T A C T G A C T G A C G T
A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer

Match Rank:5
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:GGATCAATGG
-RRTCAATA-
A C T G A C T G C G T A A C G T A G T C C G T A C G T A A C G T A C T G A C T G
A C G T C T A G C T G A A G C T G T A C C T G A C G T A A C G T C G T A A C G T

PB0040.1_Lef1_1/Jaspar

Match Rank:6
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---GGATCAATGG----
NANAGATCAAAGGGNNN
A C G T A C G T A C G T A C T G A C T G C G T A A C G T A G T C C G T A C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T
A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GGATCAATGG
VRAACAATGG
A C T G A C T G C G T A A C G T A G T C C G T A C G T A A C G T A C T G A C T G
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer

Match Rank:8
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--GGATCAATGG
VVRRAACAATGG
A C G T A C G T A C T G A C T G C G T A A C G T A G T C C G T A C G T A A C G T A C T G A C T G
T G A C T A G C T C A G T C G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T A C G

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:9
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---GGATCAATGG----
NNNAGATCAAAGGANNN
A C G T A C G T A C G T A C T G A C T G C G T A A C G T A G T C C G T A C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C T A G C A T

RHOXF1/MA0719.1/Jaspar

Match Rank:10
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GGATCAATGG
NGGATTAN---
A C G T A C T G A C T G C G T A A C G T A G T C C G T A C G T A A C G T A C T G A C T G
C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T A C G T A C G T A C G T