Information for 10-AGAAGTACTCAT (Motif 17)

C G T A A C T G C G T A C G T A A C T G A C G T C G T A G T A C A C G T A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G C G T A A C T G A C G T C G T A A G T C A C G T A C G T A G T C A C G T
p-value:1e-7
log p-value:-1.790e+01
Information Content per bp:1.975
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.33%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets110.8 +/- 37.9bp
Average Position of motif in Background94.4 +/- 20.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0117.1_Nkx3-1/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AGAAGTACTCAT---
TACTAAGTACTTAAATG
A C G T A C G T C G T A A C T G C G T A C G T A A C T G A C G T C G T A G T A C A C G T A G T C C G T A A C G T A C G T A C G T A C G T
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

PH0116.1_Nkx2-9/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AGAAGTACTCAT---
TTTTAAGTACTTAAATT
A C G T A C G T C G T A A C T G C G T A C G T A A C T G A C G T C G T A G T A C A C G T A G T C C G T A A C G T A C G T A C G T A C G T
C G A T G A C T G C A T C G A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C G T A G C T A C G A T G A C T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:3
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AGAAGTACTCAT
--AAGCACTTAA
C G T A A C T G C G T A C G T A A C T G A C G T C G T A G T A C A C G T A G T C C G T A A C G T
A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AGAAGTACTCAT--
ACTCCAAGTACTTGGAA
A C G T A C G T A C G T C G T A A C T G C G T A C G T A A C T G A C G T C G T A G T A C A C G T A G T C C G T A A C G T A C G T A C G T
T C G A G T A C C G A T A T G C T A G C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A C T G T C A G T G C A G T C A

PH0112.1_Nkx2-3/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AGAAGTACTCAT--
CNTTAAGTACTTAANG
A C G T A C G T C G T A A C T G C G T A C G T A A C T G A C G T C G T A G T A C A C G T A G T C C G T A A C G T A C G T A C G T
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G

ZNF274/MA1592.1/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AGAAGTACTCAT---
NNCGAGAACTCATACN
A C G T C G T A A C T G C G T A C G T A A C T G A C G T C G T A G T A C A C G T A G T C C G T A A C G T A C G T A C G T A C G T
G T C A T C A G G A T C C T A G C G T A C A T G C T G A G T C A A T G C G A C T A G T C T G C A G A C T T C G A A G T C G A T C

PB0099.1_Zfp691_1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AGAAGTACTCAT---
CGAACAGTGCTCACTAT
A C G T A C G T C G T A A C T G C G T A C G T A A C T G A C G T C G T A G T A C A C G T A G T C C G T A A C G T A C G T A C G T A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

PB0096.1_Zfp187_1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGAAGTACTCAT--
TTATGTACTAATAA
C G T A A C T G C G T A C G T A A C T G A C G T C G T A G T A C A C G T A G T C C G T A A C G T A C G T A C G T
A G C T G A C T T C G A G A C T C T A G C G A T C T G A A G T C A G C T G C T A C G T A C G A T C G T A G T C A

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AGAAGTACTCAT
--GAATATTCAT
C G T A A C T G C G T A C G T A A C T G A C G T C G T A G T A C A C G T A G T C C G T A A C G T
A C G T A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T

NFE2/MA0841.1/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AGAAGTACTCAT-
--CATGACTCATC
C G T A A C T G C G T A C G T A A C T G A C G T C G T A G T A C A C G T A G T C C G T A A C G T A C G T
A C G T A C G T T G A C T C G A G A C T A C T G G T C A T A G C A G C T G A T C T G C A A G C T A T G C