Information for 2-AGAAACGAGA (Motif 7)

G T C A C T A G C G T A G T C A C G T A A G T C A C T G C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T A G T C A C T G A C G T A C G T A C G T A G T C A C G T
p-value:1e-12
log p-value:-2.820e+01
Information Content per bp:1.909
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.36%
Number of Background Sequences with motif29.4
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets77.0 +/- 52.3bp
Average Position of motif in Background108.9 +/- 41.6bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:1
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:AGAAACGAGA--
AGAAACGAAAGT
G T C A C T A G C G T A G T C A C G T A A G T C A C T G C G T A A C T G C G T A A C G T A C G T
T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T

PB0139.1_Irf5_2/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AGAAACGAGA-----
TTGACCGAGAATTCC
G T C A C T A G C G T A G T C A C G T A A G T C A C T G C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

PB0138.1_Irf4_2/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:AGAAACGAGA-----
GNNACCGAGAATNNN
G T C A C T A G C G T A G T C A C G T A A G T C A C T G C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T

PB0033.1_Irf3_1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGAAACGAGA---
GAGAACCGAAACTG
A C G T G T C A C T A G C G T A G T C A C G T A A G T C A C T G C G T A A C T G C G T A A C G T A C G T A C G T
A C T G C T G A C T A G C G T A G C T A G T A C T A G C C T A G T C G A G C T A G C T A A T G C G A C T C T A G

PB0037.1_Isgf3g_1/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGAAACGAGA----
CAAAATCGAAACTAA
A C G T G T C A C T A G C G T A G T C A C G T A A G T C A C T G C G T A A C T G C G T A A C G T A C G T A C G T A C G T
T G A C C T G A C T G A C G T A G C T A G C A T A G T C C T A G G T C A C G T A G C T A T A G C G A C T C G T A G C T A

PH0044.1_Homez/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AGAAACGAGA----
NNTAAAAACGATGTTNT
A C G T A C G T A C G T G T C A C T A G C G T A G T C A C G T A A G T C A C T G C G T A A C T G C G T A A C G T A C G T A C G T A C G T
G A T C G A C T C G A T T C G A C G T A C G T A G C T A G C T A A G T C C A T G C G T A C G A T A C T G C G A T C G A T C G A T G C A T

PB0140.1_Irf6_2/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGAAACGAGA-----
NNNACCGAGAGTNNN
G T C A C T A G C G T A G T C A C G T A A G T C A C T G C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

PB0106.1_Arid5a_2/Jaspar

Match Rank:8
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AGAAACGAGA---
CATACAATACGAAATAA
A C G T A C G T A C G T A C G T G T C A C T A G C G T A G T C A C G T A A G T C A C T G C G T A A C T G C G T A A C G T A C G T A C G T
A T G C C T A G G A C T C G T A T G A C C G T A T G C A A C G T T G C A T A G C T A C G C T G A C T G A C G T A A G C T T C G A T C G A

Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGAAACGAGA-
NHRTCACGACDN
A C G T G T C A C T A G C G T A G T C A C G T A A G T C A C T G C G T A A C T G C G T A A C G T
T C A G G C T A T C A G C A G T T G A C G T C A A G T C A T C G T G C A G T A C C A G T G A T C

Arntl/MA0603.1/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AGAAACGAGA--
--NCACGTGACN
G T C A C T A G C G T A G T C A C G T A A G T C A C T G C G T A A C T G C G T A A C G T A C G T
A C G T A C G T C T A G G T A C C T G A A G T C T C A G C G A T A C T G G T C A A G T C G T A C