Information for 5-CCTAACCCGAGT (Motif 5)

A G T C A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C T G C G T A A C T G A C G T
Reverse Opposite:
C G T A A G T C A C G T A G T C A C T G A C T G A C T G A C G T A C G T C G T A A C T G A C T G
p-value:1e-11
log p-value:-2.747e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif23.08%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets95.0 +/- 32.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0185.1_Tcf1_2/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCTAACCCGAGT--
NNTAATCCNGNCNN
A G T C A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C T G C G T A A C T G A C G T A C G T A C G T
G A T C G T A C G C A T T G C A G T C A G A C T G T A C A G T C T C A G A T C G C T A G A G T C T G C A C G T A

PB0157.1_Rara_2/Jaspar

Match Rank:2
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CCTAACCCGAGT--
NNCNTGACCCCGCTCT
A C G T A C G T A G T C A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C T G C G T A A C T G A C G T A C G T A C G T
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

Dmbx1/MA0883.1/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCTAACCCGAGT--
NNNATTAATCCGNTTNA
A C G T A C G T A C G T A G T C A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C T G C G T A A C T G A C G T A C G T A C G T
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A

PH0025.1_Dmbx1/Jaspar

Match Rank:4
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCTAACCCGAGT--
NNNATTAATCCGNTTNA
A C G T A C G T A C G T A G T C A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C T G C G T A A C T G A C G T A C G T A C G T
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCTAACCCGAGT
GCTAATCC----
A G T C A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C T G C G T A A C T G A C G T
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCTAACCCGAGT
CCTAATCCGC--
A G T C A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C T G C G T A A C T G A C G T
T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C A C G T A C G T

OTX1/MA0711.1/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CCTAACCCGAGT
-TTAATCCG---
A G T C A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C T G C G T A A C T G A C G T
A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G A C G T A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CCTAACCCGAGT--
NNNNTGACCCGGCGCG
A C G T A C G T A G T C A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C T G C G T A A C T G A C G T A C G T A C G T
C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G

PITX1/MA0682.2/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CCTAACCCGAGT
-CTAATCCC---
A G T C A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C T G C G T A A C T G A C G T
A C G T G A T C A C G T C G T A C G T A A C G T G T A C A G T C G T A C A C G T A C G T A C G T

SIX1/MA1118.1/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CCTAACCCGAGT
-GTAACCTGATA
A G T C A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C T G C G T A A C T G A C G T
A C G T C A T G C G A T G C T A C G T A G A T C G T A C G C A T C T A G C G T A A C G T G T C A