Information for 1-RCYCATACTTTT (Motif 1)

C T A G T G A C A G T C A G T C G C T A C G A T G T C A A T G C G C A T A G C T A G C T G C A T
Reverse Opposite:
C G T A C T G A C T G A C G T A T A C G C A G T G C T A C G A T C T A G T C A G A C T G A G T C
p-value:1e-15
log p-value:-3.648e+01
Information Content per bp:1.650
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets75.8 +/- 44.5bp
Average Position of motif in Background42.5 +/- 47.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HLTF/MA0109.1/Jaspar

Match Rank:1
Score:0.62
Offset:4
Orientation:forward strand
Alignment:RCYCATACTTTT--
----AACCTTATAT
C T A G T G A C A G T C A G T C G C T A C G A T G T C A A T G C G C A T A G C T A G C T G C A T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A G C T A G T A C A G T C C G A T A C G T C G T A A C G T T C G A G A C T

MEF2A/MA0052.4/Jaspar

Match Rank:2
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:RCYCATACTTTT----
-NNTCTATTTTTAGNN
C T A G T G A C A G T C A G T C G C T A C G A T G T C A A T G C G C A T A G C T A G C T G C A T A C G T A C G T A C G T A C G T
A C G T C G A T C G A T C A G T G A T C G A C T C G T A G C A T G C A T G C A T G C A T G C A T C T G A C T A G G T C A G C T A

MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:3
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:RCYCATACTTTT--------
-----GACTTTTAWTTTGAA
C T A G T G A C A G T C A G T C G C T A C G A T G T C A A T G C G C A T A G C T A G C T G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G C T G A A G T C G A C T G A C T G A C T A C G T C T G A G C A T C A G T G A C T C G A T T C A G C T G A G T C A

ZKSCAN1/MA1585.1/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:RCYCATACTTTT
-CACCTACTAT-
C T A G T G A C A G T C A G T C G C T A C G A T G T C A A T G C G C A T A G C T A G C T G C A T
A C G T A T G C T C G A G T A C T A G C A C G T C G T A G A T C A C G T T C G A A G C T A C G T

MEF2C/MA0497.1/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:RCYCATACTTTT-----
--TTCTATTTTTAGNNN
C T A G T G A C A G T C A G T C G C T A C G A T G T C A A T G C G C A T A G C T A G C T G C A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C A G T A G T C A G C T C T G A G C A T G C A T G A C T G A C T C G A T C T G A C A T G G T A C G C T A G A C T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:RCYCATACTTTT---
---KCTATTTTTRGH
C T A G T G A C A G T C A G T C G C T A C G A T G T C A A T G C G C A T A G C T A G C T G C A T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G A G T C G A C T C G T A C G A T G C A T G C A T G C A T C G A T C T G A C A T G G T A C

Nr2e1/MA0676.1/Jaspar

Match Rank:7
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:RCYCATACTTTT
---TTGACTTTT
C T A G T G A C A G T C A G T C G C T A C G A T G T C A A T G C G C A T A G C T A G C T G C A T
A C G T A C G T A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:8
Score:0.54
Offset:3
Orientation:forward strand
Alignment:RCYCATACTTTT---
---GCTATTTTTAGC
C T A G T G A C A G T C A G T C G C T A C G A T G T C A A T G C G C A T A G C T A G C T G C A T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G A G T C A G C T C G T A C G A T C G A T G C A T G C A T C G A T C T G A C A T G T G A C

Dlx1/MA0879.1/Jaspar

Match Rank:9
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:RCYCATACTTTT-
---NNTAATTANN
C T A G T G A C A G T C A G T C G C T A C G A T G T C A A T G C G C A T A G C T A G C T G C A T A C G T
A C G T A C G T A C G T T A C G T G C A C G A T T G C A G C T A C G A T A C G T C T G A A C T G A C T G

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:RCYCATACTTTT
NNACTTACCTN-
C T A G T G A C A G T C A G T C G C T A C G A T G T C A A T G C G C A T A G C T A G C T G C A T
C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G A C G T