Information for 4-ATTTGAGA (Motif 39)

C G T A A C G T C G A T A C G T A C T G C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C C G A T G T A C C G T A C G T A C G T A A C G T
p-value:1e-3
log p-value:-6.991e+00
Information Content per bp:1.899
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif36.36%
Number of Background Sequences with motif3739.0
Percentage of Background Sequences with motif4.35%
Average Position of motif in Targets102.8 +/- 66.9bp
Average Position of motif in Background99.5 +/- 81.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:ATTTGAGA---
-TTTGAAACCG
C G T A A C G T C G A T A C G T A C T G C G T A A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:ATTTGAGA--
AGGTGTGAAM
C G T A A C G T C G A T A C G T A C T G C G T A A C T G C G T A A C G T A C G T
C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:3
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---ATTTGAGA-
GWAAYHTGABMC
A C G T A C G T A C G T C G T A A C G T C G A T A C G T A C T G C G T A A C T G C G T A A C G T
A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

PH0111.1_Nkx2-2/Jaspar

Match Rank:4
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------ATTTGAGA---
ATAACCACTTGAAAATT
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G A T A C G T A C T G C G T A A C T G C G T A A C G T A C G T A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

PB0138.1_Irf4_2/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--ATTTGAGA-----
GNNACCGAGAATNNN
A C G T A C G T C G T A A C G T C G A T A C G T A C T G C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T

Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer

Match Rank:6
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----ATTTGAGA---
TGWAAYCTGABACCB
A C G T A C G T A C G T A C G T C G T A A C G T C G A T A C G T A C T G C G T A A C T G C G T A A C G T A C G T A C G T
C A G T A C T G C G T A G T C A C G T A A G C T G A T C A G C T A C T G C G T A A G T C G T C A A G T C A G T C A T C G

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:ATTTGAGA----
-CTTGAGTGGCT
C G T A A C G T C G A T A C G T A C T G C G T A A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-ATTTGAGA-
AAGGTGTKAA
A C G T C G T A A C G T C G A T A C G T A C T G C G T A A C T G C G T A A C G T
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:ATTTGAGA
ARNTGACA
C G T A A C G T C G A T A C G T A C T G C G T A A C T G C G T A
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A

MEIS3/MA0775.1/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:ATTTGAGA--
--TTGACAGG
C G T A A C G T C G A T A C G T A C T G C G T A A C T G C G T A A C G T A C G T
A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G