Information for 13-TTCTGACCTACC (Motif 23)

A C G T A C G T A G T C A C G T A C T G C G T A A G T C A G T C A C G T C G T A A G T C A G T C
Reverse Opposite:
A C T G A C T G A C G T C G T A A C T G A C T G A C G T A G T C C G T A A C T G C G T A C G T A
p-value:1e-3
log p-value:-8.856e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif9.09%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets63.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:TTCTGACCTACC
---TGACCT---
A C G T A C G T A G T C A C G T A C T G C G T A A G T C A G T C A C G T C G T A A G T C A G T C
A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TTCTGACCTACC----
--TTGACCTANTTATN
A C G T A C G T A G T C A C G T A C T G C G T A A G T C A G T C A C G T C G T A A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TTCTGACCTACC--
NNHYTGACCTAGWTT
A C G T A C G T A C G T A G T C A C G T A C T G C G T A A G T C A G T C A C G T C G T A A G T C A G T C A C G T A C G T
A C G T G A T C G A C T G A T C A C G T A C T G T C G A A G T C A G T C A G C T C T G A T C A G C G A T C G A T G C A T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TTCTGACCTACC-
---TGACCTARTT
A C G T A C G T A G T C A C G T A C T G C G T A A G T C A G T C A C G T C G T A A G T C A G T C A C G T
A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TTCTGACCTACC-
---TGACCTARTT
A C G T A C G T A G T C A C G T A C T G C G T A A G T C A G T C A C G T C G T A A G T C A G T C A C G T
A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

NR2F2/MA1111.1/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TTCTGACCTACC
-NNTGACCTTTN
A C G T A C G T A G T C A C G T A C T G C G T A A G T C A G T C A C G T C G T A A G T C A G T C
A C G T G A C T G A C T G A C T C T A G T G C A G A T C G T A C G A C T G C A T C A G T C T A G

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:7
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TTCTGACCTACC--
--BTGACCTAVTTW
A C G T A C G T A G T C A C G T A C T G C G T A A G T C A G T C A C G T C G T A A G T C A G T C A C G T A C G T
A C G T A C G T A G T C A C G T T C A G T C G A A G T C A G T C A G C T C T G A T C A G C G A T G C A T G C A T

NR2C2(var.2)/MA1536.1/Jaspar

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TTCTGACCTACC
--NTGACCTN--
A C G T A C G T A G T C A C G T A C T G C G T A A G T C A G T C A C G T C G T A A G T C A G T C
A C G T A C G T C G T A A G C T T C A G G T C A G T A C T G A C A G C T A G T C A C G T A C G T

RORC/MA1151.1/Jaspar

Match Rank:9
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TTCTGACCTACC---
---TGACCTANTTAN
A C G T A C G T A G T C A C G T A C T G C G T A A G T C A G T C A C G T C G T A A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T G A C T T C A G T G C A G A T C G T A C A G C T T G C A T A G C G C A T C G A T G C T A G A C T

NR2C1/MA1535.1/Jaspar

Match Rank:10
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TTCTGACCTACC
--NTGACCTCN-
A C G T A C G T A G T C A C G T A C T G C G T A A G T C A G T C A C G T C G T A A G T C A G T C
A C G T A C G T C T A G A G C T A T C G G T C A A G T C G T A C A G C T G A T C C A T G A C G T