Information for 22-CAGGCTTGAACT (Motif 25)

A G T C C G T A A C T G A C T G A G T C A C G T A C G T A C T G C G T A C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G A C G T A C G T A G T C C G T A C G T A A C T G A G T C A G T C A C G T A C T G
p-value:1e-3
log p-value:-8.955e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets153.0 +/- 0.0bp
Average Position of motif in Background171.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer

Match Rank:1
Score:0.66
Offset:5
Orientation:forward strand
Alignment:CAGGCTTGAACT---
-----TTGAMCTTTG
A G T C C G T A A C T G A C T G A G T C A C G T A C G T A C T G C G T A C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T A G C T C A T G C T G A G T A C A G T C A G C T A G C T C A G T C T A G

NR1I3/MA1534.1/Jaspar

Match Rank:2
Score:0.65
Offset:5
Orientation:forward strand
Alignment:CAGGCTTGAACT--
-----ATGAACTTT
A G T C C G T A A C T G A C T G A G T C A C G T A C G T A C T G C G T A C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A G A C T T C A G G T C A G T C A A G T C A G C T G A C T G C A T

VDR/MA0693.2/Jaspar

Match Rank:3
Score:0.64
Offset:6
Orientation:reverse strand
Alignment:CAGGCTTGAACT--
------TGAACTCA
A G T C C G T A A C T G A C T G A G T C A C G T A C G T A C T G C G T A C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G T C A T G C A T G A C G A C T A G T C C T G A

ZBTB12/MA1649.1/Jaspar

Match Rank:4
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CAGGCTTGAACT-
--ATCTGGAACCC
A G T C C G T A A C T G A C T G A G T C A C G T A C G T A C T G C G T A C G T A A G T C A C G T A C G T
A C G T A C G T T C G A A G C T T A G C A G C T T C A G C A T G T G C A C T G A G A T C G T A C A G T C

NR6A1/MA1541.1/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CAGGCTTGAACT----
NTGACCTTGAACTTGAN
A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C G T A C T G C G T A C G T A A G T C A C G T A C G T A C G T A C G T A C G T
G C A T G A C T T C A G T G C A G T A C G T A C C A G T G C A T T C A G T C G A G T C A G T A C A C G T G A C T T A C G T C G A T G A C

RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CAGGCTTGAACT
TGACCTTGACCT
A G T C C G T A A C T G A C T G A G T C A C G T A C G T A C T G C G T A C G T A A G T C A C G T
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

PAX6/MA0069.1/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CAGGCTTGAACT
AANTCATGCGTGAA--
A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C G T A C T G C G T A C G T A A G T C A C G T
G T C A T C G A A G T C G A C T A T G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A T C G A A C G T A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CAGGCTTGAACT
CAAGCTT-----
A G T C C G T A A C T G A C T G A G T C A C G T A C G T A C T G C G T A C G T A A G T C A C G T
G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CAGGCTTGAACT------
AACCGGTTNNAACCGGTTTN
A C G T A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C G T A C T G C G T A C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A C T G A A T G C G A T C C T A G A T C G G A C T G A C T A G C T C T A G C T G A C T G A A T G C G A T C C T A G A T C G G A C T G A C T A G C T A C T G

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CAGGCTTGAACT
CWGGCGGGAA--
A G T C C G T A A C T G A C T G A G T C A C G T A C G T A C T G C G T A C G T A A G T C A C G T
T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A A C G T A C G T