Information for 1-CTGTCCGGAG (Motif 3)

A G T C A C G T A C T G A C G T A G T C A G T C A C T G A C T G C G T A A C T G
Reverse Opposite:
A G T C A C G T A G T C A G T C A C T G A C T G C G T A A G T C C G T A A C T G
p-value:1e-4
log p-value:-1.025e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets18.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----CTGTCCGGAG---
NNTNNTGTCTGGNNTNG
A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C G T A G T C A G T C A C T G A C T G C G T A A C T G A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CTGTCCGGAG
CTGTCTGG--
A G T C A C G T A C T G A C G T A G T C A G T C A C T G A C T G C G T A A C T G
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T

ZBTB26/MA1579.1/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CTGTCCGGAG--
NNNNTTTCTGGAGNN
A C G T A C G T A C G T A G T C A C G T A C T G A C G T A G T C A G T C A C T G A C T G C G T A A C T G A C G T A C G T
C T G A C A G T A G T C A C G T A C G T A G C T C A G T G A T C G A C T T C A G A C T G C G T A C T A G G C A T G T C A

POL013.1_MED-1/Jaspar

Match Rank:4
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:CTGTCCGGAG-
-----CGGAGC
A G T C A C G T A C T G A C G T A G T C A G T C A C T G A C T G C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C

Smad4/MA1153.1/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CTGTCCGGAG
-TGTCTAGA-
A G T C A C G T A C T G A C G T A G T C A G T C A C T G A C T G C G T A A C T G
A C G T G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTGTCCGGAG
GCTGTG-----
A C G T A G T C A C G T A C T G A C G T A G T C A G T C A C T G A C T G C G T A A C T G
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CTGTCCGGAG
VBSYGTCTGG--
A C G T A C G T A G T C A C G T A C T G A C G T A G T C A G T C A C T G A C T G C G T A A C T G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T

HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CTGTCCGGAG
TWVGGTCCGC--
A C G T A C G T A G T C A C G T A C T G A C G T A G T C A G T C A C T G A C T G C G T A A C T G
A G C T C G A T T A C G A T C G A T C G C A G T A G T C A G T C A C T G T A G C A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTGTCCGGAG
CTGCCCGCA-
A G T C A C G T A C T G A C G T A G T C A G T C A C T G A C T G C G T A A C T G
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T

Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CTGTCCGGAG---
---RCCGGAARYN
A G T C A C G T A C T G A C G T A G T C A G T C A C T G A C T G C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T A G C T G A C C T A G C A T G G C T A G C T A T C A G G A C T C T A G