Information for 13-TTATATAG (Motif 39)

A C G T A C G T C G T A A C G T C G T A A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A A C G T C G T A A C G T C G T A C G T A
p-value:1e-4
log p-value:-1.008e+01
Information Content per bp:1.530
Number of Target Sequences with motif149.0
Percentage of Target Sequences with motif1.21%
Number of Background Sequences with motif323.0
Percentage of Background Sequences with motif0.86%
Average Position of motif in Targets97.9 +/- 60.1bp
Average Position of motif in Background102.1 +/- 61.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL012.1_TATA-Box/Jaspar

Match Rank:1
Score:0.80
Offset:-7
Orientation:reverse strand
Alignment:-------TTATATAG
NNNNNNCTTTTATAN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C G T C G T A A C T G
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

TBP/MA0108.2/Jaspar

Match Rank:2
Score:0.79
Offset:-7
Orientation:reverse strand
Alignment:-------TTATATAG
NNNNNNCTTTTATAN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C G T C G T A A C T G
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

TATA-Box(TBP)/Promoter/Homer

Match Rank:3
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--TTATATAG--
CCTTTTATAGNC
A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C G T C G T A A C T G A C G T A C G T
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

PB0080.1_Tbp_1/Jaspar

Match Rank:4
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TTATATAG-----
NANTTATATATAANGN
A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A G C T G T C A C A G T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A C G T A C T A G C T G A

PH0078.1_Hoxd13/Jaspar

Match Rank:5
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----TTATATAG----
NNANTTTTATTGGNNN
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C G T C G T A A C T G A C G T A C G T A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

HOXB13/MA0901.2/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TTATATAG---
NNATTTTATTGGNN
A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C G T C G T A A C T G A C G T A C G T A C G T
C G T A C G T A C G T A C G A T C G A T C G A T G C A T T G C A G C A T C G A T C T A G C A T G G C A T G C A T

PB0163.1_Six6_2/Jaspar

Match Rank:7
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------TTATATAG---
ANNNGGATATATCCNNN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C G T C G T A A C T G A C G T A C G T A C G T
G T C A C T A G C T A G A G T C T C A G C A T G T C G A A C G T T G C A A G C T C T G A A G C T T G A C A T G C T A G C G C T A A C G T

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TTATATAG--
TTTTATGGCM
A C G T A C G T C G T A A C G T C G T A A C G T C G T A A C T G A C G T A C G T
C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C

MF0008.1_MADS_class/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TTATATAG
CCATATATGG
A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C G T C G T A A C T G
G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G

HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TTATATAG-
RTTATGYAAB
A C G T A C G T A C G T C G T A A C G T C G T A A C G T C G T A A C T G A C G T
T C A G G A C T C A G T C T G A A G C T C T A G G A C T T G C A C T G A A G T C