Information for 17-CTCCTGCAGATA (Motif 20)

A G T C A C G T A G T C A G T C A C G T A C T G A G T C C G T A A C T G C G T A A C G T C G T A
Reverse Opposite:
A C G T C G T A A C G T A G T C A C G T A C T G A G T C C G T A A C T G A C T G C G T A A C T G
p-value:1e-3
log p-value:-9.138e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets171.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TCF12(var.2)/MA1648.1/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CTCCTGCAGATA
CGCACCTGCCG---
A C G T A C G T A G T C A C G T A G T C A G T C A C G T A C T G A G T C C G T A A C T G C G T A A C G T C G T A
T A G C T A C G A G T C T C G A A T G C T A G C A G C T T C A G A G T C A G T C A T C G A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CTCCTGCAGATA
--CCTGCTGAGH
A G T C A C G T A G T C A G T C A C G T A C T G A G T C C G T A A C T G C G T A A C G T C G T A
A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

TCF3/MA0522.3/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CTCCTGCAGATA
CGCACCTGCCC---
A C G T A C G T A G T C A C G T A G T C A G T C A C G T A C T G A G T C C G T A A C T G C G T A A C G T C G T A
T A G C T A C G A T G C T C G A A T G C T A G C A G C T T C A G A G T C T A G C A T G C A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CTCCTGCAGATA
GGCCYCCTGCTGDGH
A C G T A C G T A C G T A G T C A C G T A G T C A G T C A C G T A C T G A G T C C G T A A C T G C G T A A C G T C G T A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CTCCTGCAGATA
SNGCACCTGCHS---
A C G T A C G T A C G T A G T C A C G T A G T C A G T C A C G T A C T G A G T C C G T A A C T G C G T A A C G T C G T A
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T A C G T

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CTCCTGCAGATA
NNCCTGCTGNG-
A G T C A C G T A G T C A G T C A C G T A C T G A G T C C G T A A C T G C G T A A C G T C G T A
A G T C A T G C T G A C T A G C A G C T T C A G A T G C A C G T T C A G A G C T A T C G A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CTCCTGCAGATA
CCCCCTGCTGTG-
A C G T A G T C A C G T A G T C A G T C A C G T A C T G A G T C C G T A A C T G C G T A A C G T C G T A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTCCTGCAGATA
CCYCCYGCTGDG-
A C G T A G T C A C G T A G T C A G T C A C G T A C T G A G T C C G T A A C T G C G T A A C G T C G T A
A G T C A T G C G A T C A G T C G T A C G A C T C T A G A G T C C G A T A C T G C A G T A C T G A C G T

Zic2/MA1629.1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CTCCTGCAGATA-
CCCCCTGCTGTGNN
A C G T A G T C A C G T A G T C A G T C A C G T A C T G A G T C C G T A A C T G C G T A A C G T C G T A A C G T
A G T C A G T C G A T C T A G C G T A C G A C T T C A G A T G C C A G T A T C G C G A T A C T G G T C A A C T G

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:10
Score:0.58
Offset:7
Orientation:forward strand
Alignment:CTCCTGCAGATA---
-------AGATAASR
A G T C A C G T A G T C A G T C A C G T A C T G A G T C C G T A A C T G C G T A A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A T C G G C T A G A C T G C T A T C G A T A G C T C G A