Information for 19-CTCTCATTCATA (Motif 34)

A G T C A C G T A G T C A C G T A G T C C G T A A C G T A C G T A G T C C G T A A C G T C G T A
Reverse Opposite:
A C G T C G T A A C G T A C T G C G T A C G T A A C G T A C T G C G T A A C T G C G T A A C T G
p-value:1e-6
log p-value:-1.382e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.34%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets146.8 +/- 31.7bp
Average Position of motif in Background49.9 +/- 15.8bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0170.1_Sox17_2/Jaspar

Match Rank:1
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-CTCTCATTCATA----
GACCACATTCATACAAT
A C G T A G T C A C G T A G T C A C G T A G T C C G T A A C G T A C G T A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

ZNF24/MA1124.1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CTCTCATTCATA-
CATTCATTCATTC
A G T C A C G T A G T C A C G T A G T C C G T A A C G T A C G T A G T C C G T A A C G T C G T A A C G T
G A T C T C G A G A C T A G C T G A T C T C G A A G C T A G C T G A T C T C G A G A C T A G C T G A T C

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.68
Offset:3
Orientation:forward strand
Alignment:CTCTCATTCATA-----
---ACATTCATGACACG
A G T C A C G T A G T C A C G T A G T C C G T A A C G T A C G T A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

PB0028.1_Hbp1_1/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CTCTCATTCATA--
NNCATTCATTCATNNN
A C G T A C G T A G T C A C G T A G T C A C G T A G T C C G T A A C G T A C G T A G T C C G T A A C G T C G T A A C G T A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:5
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CTCTCATTCATA
GSCTGTCACTCA--
A C G T A C G T A G T C A C G T A G T C A C G T A G T C C G T A A C G T A C G T A G T C C G T A A C G T C G T A
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T

PKNOX1/MA0782.2/Jaspar

Match Rank:6
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CTCTCATTCATA
NNGCTGTCACTCANN
A C G T A C G T A C G T A G T C A C G T A G T C A C G T A G T C C G T A A C G T A C G T A G T C C G T A A C G T C G T A
G A C T T C G A A T C G T G A C G C A T C T A G G A C T T A G C G C T A T G A C G A C T A G T C G C T A C G T A G C T A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTCTCATTCATA
NCTGTCAATCAN-
A C G T A G T C A C G T A G T C A C G T A G T C C G T A A C G T A C G T A G T C C G T A A C G T C G T A
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T

PBX3/MA1114.1/Jaspar

Match Rank:8
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----CTCTCATTCATA-
NNNCCTGTCACTCANNN
A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C G T A G T C C G T A A C G T A C G T A G T C C G T A A C G T C G T A A C G T
T A G C A G T C T A C G A T G C T G A C G A C T A T C G G A C T A T G C G T C A T G A C G C A T A G T C G C T A T G A C T G A C A T G C

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTCTCATTCATA
SCTGTCAVTCAV-
A C G T A G T C A C G T A G T C A C G T A G T C C G T A A C G T A C G T A G T C C G T A A C G T C G T A
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

PH0150.1_Pou4f3/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTCTCATTCATA---
GACNTCATTAATAANN
A C G T A G T C A C G T A G T C A C G T A G T C C G T A A C G T A C G T A G T C C G T A A C G T C G T A A C G T A C G T A C G T
C T A G C T G A T G A C G A T C C A G T G T A C C G T A C G A T C G A T C G T A C T G A C G A T C G T A G T C A A G T C C G A T