Information for 7-GTGCCAAGTGGC (Motif 8)

A C T G A C G T A C T G A G T C A G T C C G T A C G T A A C T G A C G T A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C C G T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A A G T C
p-value:1e-3
log p-value:-8.828e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif9.09%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.2/Jaspar

Match Rank:1
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-GTGCCAAGTGGC
NNTGCCAAGNN--
A C G T A C T G A C G T A C T G A G T C A G T C C G T A C G T A A C T G A C G T A C T G A C T G A G T C
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GTGCCAAGTGGC
GGTGCCAAGT---
A C G T A C T G A C G T A C T G A G T C A G T C C G T A C G T A A C T G A C G T A C T G A C T G A G T C
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GTGCCAAGTGGC
CGTGCCAAG----
A C G T A C T G A C G T A C T G A G T C A G T C C G T A C G T A A C T G A C G T A C T G A C T G A G T C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

MYCN/MA0104.4/Jaspar

Match Rank:4
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GTGCCAAGTGGC-
-GGCCACGTGGCC
A C T G A C G T A C T G A G T C A G T C C G T A C G T A A C T G A C G T A C T G A C T G A G T C A C G T
A C G T T A C G T C A G T A G C T G A C C T G A A G T C T C A G G A C T A C T G A T C G A G T C A T G C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GTGCCAAGTGGC
TTGCCAAG----
A C T G A C G T A C T G A G T C A G T C C G T A C G T A A C T G A C G T A C T G A C T G A G T C
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:6
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GTGCCAAGTGGC
--NTCAAGTGGN
A C T G A C G T A C T G A G T C A G T C C G T A C G T A A C T G A C G T A C T G A C T G A G T C
A C G T A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GTGCCAAGTGGC---
AATTTCAAGTGGCTTN
A C G T A C T G A C G T A C T G A G T C A G T C C G T A C G T A A C T G A C G T A C T G A C T G A G T C A C G T A C G T A C G T
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A

n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GTGCCAAGTGGC-
---CCACGTGGNN
A C T G A C G T A C T G A G T C A G T C C G T A C G T A A C T G A C G T A C T G A C T G A G T C A C G T
A C G T A C G T A C G T T A G C A G T C C G T A A G T C C T A G G C A T A C T G A T C G A G C T A T G C

MSGN1/MA1524.1/Jaspar

Match Rank:9
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GTGCCAAGTGGC-
-CGCCATATGTCC
A C T G A C G T A C T G A G T C A G T C C G T A C G T A A C T G A C G T A C T G A C T G A G T C A C G T
A C G T A T G C T C A G A T G C A T G C C T G A G C A T C G T A A G C T A T C G A C G T A G T C T A G C

PB0147.1_Max_2/Jaspar

Match Rank:10
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GTGCCAAGTGGC--
GTGCCACGCGACTG
A C T G A C G T A C T G A G T C A G T C C G T A C G T A A C T G A C G T A C T G A C T G A G T C A C G T A C G T
A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G