Information for 3-AATCAATCTTAT (Motif 3)

C G T A C T G A A C G T G T A C C G T A C G T A A C G T A G T C C G A T A C G T C G T A C G A T
Reverse Opposite:
C G T A C G A T C G T A C G T A C T A G C G T A A C G T A C G T A C T G G T C A A G C T A C G T
p-value:1e-8
log p-value:-2.010e+01
Information Content per bp:1.807
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif45.45%
Number of Background Sequences with motif443.9
Percentage of Background Sequences with motif0.53%
Average Position of motif in Targets103.4 +/- 53.7bp
Average Position of motif in Background100.1 +/- 79.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:1
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---AATCAATCTTAT
HNRAATCAAT-----
A C G T A C G T A C G T C G T A C T G A A C G T G T A C C G T A C G T A A C G T A G T C C G A T A C G T C G T A C G A T
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:2
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-AATCAATCTTAT
TAATCAATTA---
A C G T C G T A C T G A A C G T G T A C C G T A C G T A A C G T A G T C C G A T A C G T C G T A C G A T
C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A A C G T A C G T A C G T

ONECUT1/MA0679.2/Jaspar

Match Rank:3
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----AATCAATCTTAT
AAAAAATCAATAAATA
A C G T A C G T A C G T A C G T C G T A C T G A A C G T G T A C C G T A C G T A A C G T A G T C C G A T A C G T C G T A C G A T
C G T A C G T A C G T A G C T A C T G A C T G A G C A T G T A C C T G A C G T A G A C T C T G A G C T A G C T A G C A T G C T A

MEIS1(var.2)/MA1639.1/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AATCAATCTTAT
GTCATCAATCATT-
A C G T A C G T C G T A C T G A A C G T G T A C C G T A C G T A A C G T A G T C C G A T A C G T C G T A C G A T
C T A G G A C T G A T C C T G A C A G T G T A C G T C A G C T A G C A T G T A C G C T A G C A T G C A T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:5
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AATCAATCTTAT
GYCATCMATCAT--
A C G T A C G T C G T A C T G A A C G T G T A C C G T A C G T A A C G T A G T C C G A T A C G T C G T A C G A T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:6
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---AATCAATCTTAT
NNCCATAAATCATNN
A C G T A C G T A C G T C G T A C T G A A C G T G T A C C G T A C G T A A C G T A G T C C G A T A C G T C G T A C G A T
C T G A T C A G G A T C G T A C T C G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G C A T G C A T G A C T

PBX1/MA0070.1/Jaspar

Match Rank:7
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AATCAATCTTAT
CCATCAATCAAA-
A C G T C G T A C T G A A C G T G T A C C G T A C G T A A C G T A G T C C G A T A C G T C G T A C G A T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A A C G T

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:8
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--AATCAATCTTAT
NCYATMAATCAY--
A C G T A C G T C G T A C T G A A C G T G T A C C G T A C G T A A C G T A G T C C G A T A C G T C G T A C G A T
T A C G G A T C G A T C C T G A A G C T G T C A G C T A T C G A C G A T G A T C G C T A G A C T A C G T A C G T

Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer

Match Rank:9
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AATCAATCTTAT
RRTCAATA----
C G T A C T G A A C G T G T A C C G T A C G T A A C G T A G T C C G A T A C G T C G T A C G A T
C T A G C T G A A G C T G T A C C T G A C G T A A C G T C G T A A C G T A C G T A C G T A C G T

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:10
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---AATCAATCTTAT-
GAAGATCAATCACTAA
A C G T A C G T A C G T C G T A C T G A A C G T G T A C C G T A C G T A A C G T A G T C C G A T A C G T C G T A C G A T A C G T
T A C G C T A G T C G A T A C G G C T A G C A T A G T C C G T A C T G A C A G T G A T C C T G A A T G C A C G T G C T A C G T A