Information for 4-CACATTTAATTA (Motif 4)

G T A C G T C A G A T C C G T A C G A T A G C T A C G T C G T A C G T A A G C T C A G T C T G A
Reverse Opposite:
A G C T G C T A C T G A A C G T A C G T G T C A C T G A C G T A A C G T C A T G A C G T A C T G
p-value:1e-5
log p-value:-1.359e+01
Information Content per bp:1.686
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif44.44%
Number of Background Sequences with motif777.0
Percentage of Background Sequences with motif1.01%
Average Position of motif in Targets105.2 +/- 49.9bp
Average Position of motif in Background103.8 +/- 69.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0038.1_Hlx/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CACATTTAATTA--
CCATAATTAATTACA
A C G T G T A C G T C A G A T C C G T A C G A T A G C T A C G T C G T A C G T A A G C T C A G T C T G A A C G T A C G T
G T A C G T A C G T C A G A C T G C T A C G T A G A C T G C A T C T G A C T G A G C A T C G A T C T G A G A T C G T C A

PB0068.1_Sox1_1/Jaspar

Match Rank:2
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CACATTTAATTA---
NNNTATTGAATTGNNN
A C G T G T A C G T C A G A T C C G T A C G A T A G C T A C G T C G T A C G T A A G C T C A G T C T G A A C G T A C G T A C G T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

POU4F2/MA0683.1/Jaspar

Match Rank:3
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CACATTTAATTA-
ATGCATAATTAATGAG
A C G T A C G T A C G T G T A C G T C A G A T C C G T A C G A T A G C T A C G T C G T A C G T A A G C T C A G T C T G A A C G T
C T G A G A C T C T A G G T A C G C T A C G A T C G T A G C T A G C A T G C A T C T G A T C G A A C G T A C T G C T G A T C A G

PH0120.1_Nkx6-3/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CACATTTAATTA-----
GAAAATTAATTACTTTG
G T A C G T C A G A T C C G T A C G A T A G C T A C G T C G T A C G T A A G C T C A G T C T G A A C G T A C G T A C G T A C G T A C G T
C T A G T G C A G C A T C G T A G C T A C G A T G A C T C G T A C G T A C G A T A C G T C T G A T G A C A G C T A C G T A G C T A C T G

PH0108.1_Msx3/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CACATTTAATTA----
CAAAACCAATTAATTT
G T A C G T C A G A T C C G T A C G A T A G C T A C G T C G T A C G T A A G C T C A G T C T G A A C G T A C G T A C G T A C G T
T G A C T C G A G T C A C T G A T C G A A T G C A G T C C T G A G T C A C G A T G A C T C G T A C T G A A C G T G A C T G C A T

PH0142.1_Pou1f1/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CACATTTAATTA----
GATTAATTAATTAAGTC
A C G T G T A C G T C A G A T C C G T A C G A T A G C T A C G T C G T A C G T A A G C T C A G T C T G A A C G T A C G T A C G T A C G T
C T A G T C G A C G A T C A G T G T C A G C T A C G A T C G A T C G T A C G T A C G A T C A G T G C T A C G T A C A T G C G A T A G T C

Lhx3/MA0135.1/Jaspar

Match Rank:7
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CACATTTAATTA---
--AAATTAATTAATC
G T A C G T C A G A T C C G T A C G A T A G C T A C G T C G T A C G T A A G C T C A G T C T G A A C G T A C G T A C G T
A C G T A C G T C G T A T C G A C G T A A C G T A C G T C G T A C G T A G A C T A G C T G C T A C G T A G A C T A G T C

PH0147.1_Pou3f2/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CACATTTAATTA-----
GATAATTAATTAGTTTG
G T A C G T C A G A T C C G T A C G A T A G C T A C G T C G T A C G T A A G C T C A G T C T G A A C G T A C G T A C G T A C G T A C G T
T A C G C G A T C G A T C G T A G C T A G A C T A G C T G C T A C G T A C G A T A C G T G C T A C T A G A C G T C A G T G A C T C T A G

PH0149.1_Pou3f4/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CACATTTAATTA----
AATTAATTAATTAATTC
A C G T G T A C G T C A G A T C C G T A C G A T A G C T A C G T C G T A C G T A A G C T C A G T C T G A A C G T A C G T A C G T A C G T
C T G A T G C A G C A T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G C T A C T G A C A G T C G A T A G T C

PH0136.1_Phox2b/Jaspar

Match Rank:10
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CACATTTAATTA-----
CGGAATTAATTAATAGG
G T A C G T C A G A T C C G T A C G A T A G C T A C G T C G T A C G T A A G C T C A G T C T G A A C G T A C G T A C G T A C G T A C G T
T A G C T C A G A C T G G C T A T C G A G A C T G A C T T C G A C G T A G A C T A G C T C T G A C T G A A G C T C T G A A T C G A T C G