Information for 7-GTGATAGCCACT (Motif 7)

A C T G A C G T A C T G G C T A A G C T C G T A A C T G G T A C A G T C C G T A A T G C A C G T
Reverse Opposite:
C G T A A T C G A C G T A C T G A C T G A G T C A C G T C T G A C A G T A G T C C G T A A G T C
p-value:1e-12
log p-value:-2.852e+01
Information Content per bp:1.911
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif8.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets66.5 +/- 46.5bp
Average Position of motif in Background107.1 +/- 57.1bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.44
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--GTGATAGCCACT
AGGTGNCAGACAG-
A C G T A C G T A C T G A C G T A C T G G C T A A G C T C G T A A C T G G T A C A G T C C G T A A T G C A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GTGATAGCCACT
AGGTGHCAGACA--
A C G T A C G T A C T G A C G T A C T G G C T A A G C T C G T A A C T G G T A C A G T C C G T A A T G C A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T

Six3/MA0631.1/Jaspar

Match Rank:3
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----GTGATAGCCACT-
ANANGTGATACCCTATN
A C G T A C G T A C G T A C G T A C T G A C G T A C T G G C T A A G C T C G T A A C T G G T A C A G T C C G T A A T G C A C G T A C G T
T G C A C G A T G C A T C G T A C T A G A C G T C A T G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A T C

PH0163.1_Six3/Jaspar

Match Rank:4
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----GTGATAGCCACT-
ANANGTGATACCCTATN
A C G T A C G T A C G T A C G T A C T G A C G T A C T G G C T A A G C T C G T A A C T G G T A C A G T C C G T A A T G C A C G T A C G T
T G C A C G A T G C A T C G T A C T A G A C G T C A T G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A T C

PH0162.1_Six2/Jaspar

Match Rank:5
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GTGATAGCCACT-
ANANGTGATACCCCATT
A C G T A C G T A C G T A C G T A C T G A C G T A C T G G C T A A G C T C G T A A C T G G T A C A G T C C G T A A T G C A C G T A C G T
G T C A C T G A C G T A G T A C C T A G A G C T C A T G C G T A A G C T G T C A A G T C T G A C A G T C A G T C G T C A C G A T G A C T

PB0059.1_Six6_1/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GTGATAGCCACT-
ANANNTGATACCCNATN
A C G T A C G T A C G T A C G T A C T G A C G T A C T G G C T A A G C T C G T A A C T G G T A C A G T C C G T A A T G C A C G T A C G T
C T G A C G A T C G T A G C A T C T G A G A C T C T A G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A C T

PH0165.1_Six6_1/Jaspar

Match Rank:7
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----GTGATAGCCACT-
ANANNTGATACCCTATN
A C G T A C G T A C G T A C G T A C T G A C G T A C T G G C T A A G C T C G T A A C T G G T A C A G T C C G T A A T G C A C G T A C G T
T G C A C G A T C G T A G C T A C A G T G C A T C A T G C G T A A G C T G T C A A G T C T A G C A G T C A G C T G C T A C G A T G A C T

PH0161.1_Six1/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GTGATAGCCACT-
ANNNATGATACCCCATC
A C G T A C G T A C G T A C G T A C T G A C G T A C T G G C T A A G C T C G T A A C T G G T A C A G T C C G T A A T G C A C G T A C G T
G T C A T G C A C G T A G T C A C T G A G A C T C A T G C G T A A G C T G T C A A G T C A T G C A G T C A G T C G C T A C G A T G A T C

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GTGATAGCCACT
BTGABTGACAGS
A C T G A C G T A C T G G C T A A G C T C G T A A C T G G T A C A G T C C G T A A T G C A C G T
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:10
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:GTGATAGCCACT---
-----MRSCACTYAA
A C T G A C G T A C T G G C T A A G C T C G T A A C T G G T A C A G T C C G T A A T G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A