Information for 5-CGATCATG (Motif 25)

A G T C A T C G C T G A C G A T G A T C C G T A A C G T A C T G
Reverse Opposite:
G T A C G T C A A C G T C T A G G C T A A G C T A T G C A C T G
p-value:1e-4
log p-value:-9.502e+00
Information Content per bp:1.802
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.64%
Number of Background Sequences with motif475.2
Percentage of Background Sequences with motif1.00%
Average Position of motif in Targets86.4 +/- 57.8bp
Average Position of motif in Background102.7 +/- 61.9bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

VENTX/MA0724.1/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CGATCATG
ACCGATTAG-
A C G T A C G T A G T C A T C G C T G A C G A T G A T C C G T A A C G T A C T G
C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G A C G T

Dux/MA0611.1/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CGATCATG
CCAATCAA-
A C G T A G T C A T C G C T G A C G A T G A T C C G T A A C G T A C T G
A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T

PB0135.1_Hoxa3_2/Jaspar

Match Rank:3
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CGATCATG-
AAAAACCATTAAGG
A C G T A C G T A C G T A C G T A C G T A G T C A T C G C T G A C G A T G A T C C G T A A C G T A C T G A C G T
T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

CUX2/MA0755.1/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CGATCATG
TTATCGATTA--
A C G T A C G T A C G T A C G T A G T C A T C G C T G A C G A T G A T C C G T A A C G T A C T G
C G A T C G A T C G T A G C A T G A T C T C A G T C G A G A C T G A C T C G T A A C G T A C G T

CUX1/MA0754.1/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CGATCATG
NTATCGATTA--
A C G T A C G T A C G T A C G T A G T C A T C G C T G A C G A T G A T C C G T A A C G T A C T G
C A G T A C G T C G T A G C A T A G T C T C A G T C G A G A C T G A C T C T G A A C G T A C G T

LHX1/MA1518.1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CGATCATG
GCAATTAC-
A C G T A G T C A T C G C T G A C G A T G A T C C G T A A C G T A C T G
A T C G G A T C T G C A G C T A A C G T A G C T C G T A T A G C A C G T

BARHL1/MA0877.2/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CGATCATG
NCGTTTAN-
A C G T A G T C A T C G C T G A C G A T G A T C C G T A A C G T A C T G
G T A C G A T C C T A G G C A T A C G T G C A T C G T A A T C G A C G T

BARX1/MA0875.1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CGATCATG
GCAATTAG-
A C G T A G T C A T C G C T G A C G A T G A T C C G T A A C G T A C T G
T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G A C G T

PB0185.1_Tcf1_2/Jaspar

Match Rank:9
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------CGATCATG
TTGCCCGGATTAGG
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A T C G C T G A C G A T G A T C C G T A A C G T A C T G
C G A T A C G T T C A G G A T C T A G C A G T C T A C G A C T G C T G A C A G T A C G T C G T A C A T G C T A G

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:10
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CGATCATG
GYCATCMATCAT-
A C G T A C G T A C G T A C G T A C G T A G T C A T C G C T G A C G A T G A T C C G T A A C G T A C T G
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T