Information for 5-CAGCGCGT (Motif 34)

A G T C C G T A A C T G A G T C A C T G A G T C A C T G A C G T
Reverse Opposite:
C G T A A G T C A C T G A G T C A C T G A G T C A C G T A C T G
p-value:1e-2
log p-value:-6.477e+00
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.48%
Number of Background Sequences with motif17.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets48.4 +/- 42.7bp
Average Position of motif in Background95.0 +/- 48.7bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TCFL5/MA0632.2/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CAGCGCGT--
GTGCGCGTGA
A G T C C G T A A C T G A G T C A C T G A G T C A C T G A C G T A C G T A C G T
C A T G C A G T A T C G A G T C C T A G A G T C C T A G G A C T A C T G T G C A

HIF1A/MA1106.1/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CAGCGCGT--
NNGCACGTNC
A G T C C G T A A C T G A G T C A C T G A G T C A C T G A C G T A C G T A C G T
T A C G T A C G C A T G A G T C T C G A A G T C C T A G G A C T T C G A A T G C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CAGCGCGT
DCTCAGCAGG-
A C G T A C G T A C G T A G T C C G T A A C T G A G T C A C T G A G T C A C T G A C G T
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CAGCGCGT
CAGCC---
A G T C C G T A A C T G A G T C A C T G A G T C A C T G A C G T
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T

HES1/MA1099.2/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CAGCGCGT---
-GGCACGTGGC
A G T C C G T A A C T G A G T C A C T G A G T C A C T G A C G T A C G T A C G T A C G T
A C G T A C T G C A T G G T A C C T G A A G T C C T A G G A C T C A T G A T C G A T G C

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:6
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CAGCGCGT-
---TGCGTG
A G T C C G T A A C T G A G T C A C T G A G T C A C T G A C G T A C G T
A C G T A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G

PB0199.1_Zfp161_2/Jaspar

Match Rank:7
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----CAGCGCGT-
NNGCNCTGCGCGGC
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A G T C A C T G A G T C A C T G A C G T A C G T
T C G A A G T C C A T G G A T C T G C A G A T C C A G T A C T G A G T C C T A G A T G C C T A G C T A G G T A C

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CAGCGCGT
CACAGN----
A C G T A C G T A G T C C G T A A C T G A G T C A C T G A G T C A C T G A C G T
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:9
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CAGCGCGT--
--GCACGTAY
A G T C C G T A A C T G A G T C A C T G A G T C A C T G A C G T A C G T A C G T
A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CAGCGCGT-
-BGCACGTA
A G T C C G T A A C T G A G T C A C T G A G T C A C T G A C G T A C G T
A C G T A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A