Information for 7-AACGCAAGGA (Motif 29)

C G T A C G T A A G T C A C T G A G T C C G T A C G T A A C T G A C T G C G T A
Reverse Opposite:
A C G T A G T C A G T C A C G T A C G T A C T G A G T C A C T G A C G T A C G T
p-value:1e-3
log p-value:-7.789e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif15.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets140.0 +/- 0.0bp
Average Position of motif in Background94.5 +/- 149.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AACGCAAGGA-
AAGGCAAGTGT
C G T A C G T A A G T C A C T G A G T C C G T A C G T A A C T G A C T G C G T A A C G T
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:2
Score:0.60
Offset:4
Orientation:forward strand
Alignment:AACGCAAGGA----
----CAAGGHCANV
C G T A C G T A A G T C A C T G A G T C C G T A C G T A A C T G A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

RUNX2/MA0511.2/Jaspar

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AACGCAAGGA
AAACCGCAA---
A C G T A C G T C G T A C G T A A G T C A C T G A G T C C G T A C G T A A C T G A C T G C G T A
G C T A C T G A G T C A A G T C A G T C C T A G A G T C T G C A T C G A A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:4
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AACGCAAGGA
TBGCACGCAA---
A C G T A C G T A C G T C G T A C G T A A G T C A C T G A G T C C G T A C G T A A C T G A C T G C G T A
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---AACGCAAGGA
AGAAACGAAAGT-
A C G T A C G T A C G T C G T A C G T A A G T C A C T G A G T C C G T A C G T A A C T G A C T G C G T A
T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T A C G T

NR5A1/MA1540.1/Jaspar

Match Rank:6
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AACGCAAGGA---
--GTCAAGGTCAC
C G T A C G T A A G T C A C T G A G T C C G T A C G T A A C T G A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C T G G A C T A T G C C T G A C G T A A C T G A C T G G A C T A G T C C T G A G A T C

MF0001.1_ETS_class/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AACGCAAGGA
ACCGGAAG--
C G T A C G T A A G T C A C T G A G T C C G T A C G T A A C T G A C T G C G T A
C T G A T A G C T G A C C A T G C T A G C T G A G C T A T C A G A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:8
Score:0.55
Offset:2
Orientation:forward strand
Alignment:AACGCAAGGA--
--NTCAAGGTCA
C G T A C G T A A G T C A C T G A G T C C G T A C G T A A C T G A C T G C G T A A C G T A C G T
A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:AACGCAAGGA
CACGCA----
C G T A C G T A A G T C A C T G A G T C C G T A C G T A A C T G A C T G C G T A
A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AACGCAAGGA--
--BTCAAGGTCA
C G T A C G T A A G T C A C T G A G T C C G T A C G T A A C T G A C T G C G T A A C G T A C G T
A C G T A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A