Information for 7-CAATCCTKCAMM (Motif 9)

G A T C G T C A C T G A C A G T A T G C A T G C C G A T C A G T A G T C G T C A G T A C G T C A
Reverse Opposite:
A C G T A C T G A C G T C T A G G T C A C G T A A T C G A T C G G C T A A G C T A C G T C T A G
p-value:1e-4
log p-value:-9.941e+00
Information Content per bp:1.659
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif40.00%
Number of Background Sequences with motif1854.2
Percentage of Background Sequences with motif2.25%
Average Position of motif in Targets119.0 +/- 66.8bp
Average Position of motif in Background99.2 +/- 79.6bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:1
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CAATCCTKCAMM
NYTAATCCYB----
A C G T A C G T G A T C G T C A C T G A C A G T A T G C A T G C C G A T C A G T A G T C G T C A G T A C G T C A
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T A C G T A C G T A C G T

OTX2/MA0712.2/Jaspar

Match Rank:2
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CAATCCTKCAMM
NNCTAATCCCNN---
A C G T A C G T A C G T G A T C G T C A C T G A C A G T A T G C A T G C C G A T C A G T A G T C G T C A G T A C G T C A
G C A T G C A T G A T C G C A T C G T A G T C A C A G T G A T C G A T C G A T C G C A T C G A T A C G T A C G T A C G T

PITX1/MA0682.2/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CAATCCTKCAMM
CTAATCCC-----
A C G T G A T C G T C A C T G A C A G T A T G C A T G C C G A T C A G T A G T C G T C A G T A C G T C A
G A T C A C G T C G T A C G T A A C G T G T A C A G T C G T A C A C G T A C G T A C G T A C G T A C G T

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CAATCCTKCAMM
YCATCMATCA--
G A T C G T C A C T G A C A G T A T G C A T G C C G A T C A G T A G T C G T C A G T A C G T C A
G A T C G T A C C T G A A C G T G A T C G T C A C T G A A C G T G A T C G C T A A C G T A C G T

OTX1/MA0711.1/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CAATCCTKCAMM
TTAATCCG-----
A C G T G A T C G T C A C T G A C A G T A T G C A T G C C G A T C A G T A G T C G T C A G T A C G T C A
G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G A C G T A C G T A C G T A C G T A C G T

PH0138.1_Pitx2/Jaspar

Match Rank:6
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------CAATCCTKCAMM
GNNNATTAATCCCTNCN-
A C G T A C G T A C G T A C G T A C G T A C G T G A T C G T C A C T G A C A G T A T G C A T G C C G A T C A G T A G T C G T C A G T A C G T C A
C T A G G C T A G A C T C T A G C T G A G A C T C G A T C G T A C T G A A C G T G A T C A G T C A G T C A G C T G C A T G T A C G T C A A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CAATCCTKCAMM
TAATCCCN----
G A T C G T C A C T G A C A G T A T G C A T G C C G A T C A G T A G T C G T C A G T A C G T C A
C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CAATCCTKCAMM
GCTAATCC------
A C G T A C G T G A T C G T C A C T G A C A G T A T G C A T G C C G A T C A G T A G T C G T C A G T A C G T C A
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CAATCCTKCAMM
CTTAATCCC-----
A C G T A C G T G A T C G T C A C T G A C A G T A T G C A T G C C G A T C A G T A G T C G T C A G T A C G T C A
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T A C G T A C G T A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CAATCCTKCAMM
YTAATCCY-----
A C G T G A T C G T C A C T G A C A G T A T G C A T G C C G A T C A G T A G T C G T C A G T A C G T C A
G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T A C G T A C G T A C G T A C G T