Information for 1-CAGCTAAGTGAT (Motif 1)

G T A C C G T A A C T G A T G C A G C T C G T A C G T A A T C G A C G T A C T G C T G A C G A T
Reverse Opposite:
G C T A A G C T A G T C C G T A A T G C A C G T A C G T C T G A A T C G G T A C A C G T A C T G
p-value:1e-7
log p-value:-1.713e+01
Information Content per bp:1.846
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif27.27%
Number of Background Sequences with motif50.5
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets83.7 +/- 51.6bp
Average Position of motif in Background110.3 +/- 80.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3-2/MA0122.3/Jaspar

Match Rank:1
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CAGCTAAGTGAT---
--NTTAAGTGGTTNN
G T A C C G T A A C T G A T G C A G C T C G T A C G T A A T C G A C G T A C T G C T G A C G A T A C G T A C G T A C G T
A C G T A C G T C G A T G C A T C G A T C T G A C G T A C A T G C G A T C T A G A C T G G C A T G C A T G C T A G C A T

Nkx3-1/MA0124.2/Jaspar

Match Rank:2
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CAGCTAAGTGAT
---TTAAGTGGT
G T A C C G T A A C T G A T G C A G C T C G T A C G T A A T C G A C G T A C T G C T G A C G A T
A C G T A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:3
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CAGCTAAGTGAT--
----TAATTGATTA
G T A C C G T A A C T G A T G C A G C T C G T A C G T A A T C G A C G T A C T G C T G A C G A T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T T C G A C G T A A G C T A C G T C T A G C T G A A C G T A G C T G C T A

ISL2/MA0914.1/Jaspar

Match Rank:4
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CAGCTAAGTGAT
---TTAAGTGC-
G T A C C G T A A C T G A T G C A G C T C G T A C G T A A T C G A C G T A C T G C T G A C G A T
A C G T A C G T A C G T G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:5
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CAGCTAAGTGAT
---CTAATKGV-
G T A C C G T A A C T G A T G C A G C T C G T A C G T A A T C G A C G T A C T G C T G A C G A T
A C G T A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CAGCTAAGTGAT
--NTCAAGTGGN
G T A C C G T A A C T G A T G C A G C T C G T A C G T A A T C G A C G T A C T G C T G A C G A T
A C G T A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CAGCTAAGTGAT
AAGGCAAGTGT-
G T A C C G T A A C T G A T G C A G C T C G T A C G T A A T C G A C G T A C T G C T G A C G A T
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:8
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CAGCTAAGTGAT-
---TTRAGTGSYK
G T A C C G T A A C T G A T G C A G C T C G T A C G T A A T C G A C G T A C T G C T G A C G A T A C G T
A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CAGCTAAGTGAT
CAGGTAAGTAT-
G T A C C G T A A C T G A T G C A G C T C G T A C G T A A T C G A C G T A C T G C T G A C G A T
T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T A C G T

MYB/MA0100.3/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CAGCTAAGTGAT
--ACCAACTGTC
G T A C C G T A A C T G A T G C A G C T C G T A C G T A A T C G A C G T A C T G C T G A C G A T
A C G T A C G T G T C A A G T C A G T C C T G A G C T A A G T C A C G T T C A G G A C T G T A C