Information for 3-GDBCCHAGTTAA (Motif 3)

A C T G C A G T A C T G A G T C A G T C G A T C C G T A C T A G C G A T A C G T C G T A C G T A
Reverse Opposite:
C G A T A C G T G T C A C G T A A G T C A C G T C A T G A C T G A C T G T A G C G C T A A G T C
p-value:1e-6
log p-value:-1.538e+01
Information Content per bp:1.748
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif45.45%
Number of Background Sequences with motif1082.9
Percentage of Background Sequences with motif1.37%
Average Position of motif in Targets96.6 +/- 68.0bp
Average Position of motif in Background100.9 +/- 74.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LBX1/MA0618.1/Jaspar

Match Rank:1
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:GDBCCHAGTTAA
----CTAATTAA
A C T G C A G T A C T G A G T C A G T C G A T C C G T A C T A G C G A T A C G T C G T A C G T A
A C G T A C G T A C G T A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A

LHX9/MA0701.2/Jaspar

Match Rank:2
Score:0.62
Offset:4
Orientation:forward strand
Alignment:GDBCCHAGTTAA
----CTAATTAA
A C T G C A G T A C T G A G T C A G T C G A T C C G T A C T A G C G A T A C G T C G T A C G T A
A C G T A C G T A C G T A C G T A G T C A G C T G T C A C G T A A C G T A C G T C T G A T C G A

HMBOX1/MA0895.1/Jaspar

Match Rank:3
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GDBCCHAGTTAA-
---ACTAGTTAAC
A C T G C A G T A C T G A G T C A G T C G A T C C G T A C T A G C G A T A C G T C G T A C G T A A C G T
A C G T A C G T A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

PRRX2/MA0075.3/Jaspar

Match Rank:4
Score:0.61
Offset:4
Orientation:forward strand
Alignment:GDBCCHAGTTAA
----CTAATTAA
A C T G C A G T A C T G A G T C A G T C G A T C C G T A C T A G C G A T A C G T C G T A C G T A
A C G T A C G T A C G T A C G T A G T C A G C T T G C A C G T A A C G T A C G T T C G A C T G A

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GDBCCHAGTTAA
-TGCCCAGNHW-
A C T G C A G T A C T G A G T C A G T C G A T C C G T A C T A G C G A T A C G T C G T A C G T A
A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T

mix-a/MA0621.1/Jaspar

Match Rank:6
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GDBCCHAGTTAA--
---NCTAATTAANN
A C T G C A G T A C T G A G T C A G T C G A T C C G T A C T A G C G A T A C G T C G T A C G T A A C G T A C G T
A C G T A C G T A C G T G T C A G A T C A C G T C G T A C G T A A C G T A C G T C G T A C T G A G A C T A C G T

GSX1/MA0892.1/Jaspar

Match Rank:7
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GDBCCHAGTTAA-
---CCTAATTAAA
A C T G C A G T A C T G A G T C A G T C G A T C C G T A C T A G C G A T A C G T C G T A C G T A A C G T
A C G T A C G T A C G T G T A C A T G C G A C T G T C A T C G A G C A T G A C T C G T A T C G A G C T A

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GDBCCHAGTTAA-----
-TGCCAAAATAAACANN
A C T G C A G T A C T G A G T C A G T C G A T C C G T A C T A G C G A T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

LBX2/MA0699.1/Jaspar

Match Rank:9
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GDBCCHAGTTAA-
---GCCAATTAGC
A C T G C A G T A C T G A G T C A G T C G A T C C G T A C T A G C G A T A C G T C G T A C G T A A C G T
A C G T A C G T A C G T T C A G A G T C G A T C T G C A T G C A A C G T A C G T C G T A C T A G T A G C

MSX2/MA0708.1/Jaspar

Match Rank:10
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GDBCCHAGTTAA
----CCAATTAA
A C T G C A G T A C T G A G T C A G T C G A T C C G T A C T A G C G A T A C G T C G T A C G T A
A C G T A C G T A C G T A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A