Information for 20-GCCCACAAATAA (Motif 25)

A C T G A G T C A G T C A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A A C G T A C G T A C G T A C T G A C G T A C T G A C T G A C T G A G T C
p-value:1e-3
log p-value:-8.550e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.0 +/- 0.0bp
Average Position of motif in Background151.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GCCCACAAATAA
CGAAGCACACAAAATA
A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GCCCACAAATAA-
-KCCAAAAATAGC
A C T G A G T C A G T C A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A A C G T
A C G T A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCCCACAAATAA
GGCCATAAATCA
A C T G A G T C A G T C A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCCCACAAATAA-
-DCYAAAAATAGM
A C T G A G T C A G T C A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A A C G T
A C G T C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GCCCACAAATAA
--CCAAAAATAG
A C T G A G T C A G T C A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A
A C G T A C G T G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G

MEF2C/MA0497.1/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCCCACAAATAA--
ATGCTAAAAATAGAA
A C G T A C T G A G T C A G T C A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A A C G T A C G T
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GCCCACAAATAA
NWAACCACADNN--
A C G T A C G T A C T G A G T C A G T C A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T

PBX2/MA1113.2/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GCCCACAAATAA--
-GTCATAAATCATT
A C T G A G T C A G T C A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A A C G T A C G T
A C G T T C A G G A C T G T A C C T G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G A C T G C A T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GCCCACAAATAA-
-GCTAAAAATAGC
A C T G A G T C A G T C A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A A C G T
A C G T A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCCCACAAATAA---
NNCCATAAATCATNN
A C T G A G T C A G T C A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A A C G T A C G T A C G T
C T G A T C A G G A T C G T A C T C G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G C A T G C A T G A C T