Information for 4-GCCCTTGCTCCT (Motif 7)

A C T G A G T C A G T C A G T C A C G T A C G T A C T G A G T C A C G T A G T C A G T C A C G T
Reverse Opposite:
C G T A A C T G A C T G C G T A A C T G A G T C C G T A C G T A A C T G A C T G A C T G A G T C
p-value:1e-4
log p-value:-9.805e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets87.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0200.1_Zfp187_2/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GCCCTTGCTCCT--
GAGCCCTTGTCCCTAA
A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T A C T G A G T C A C G T A G T C A G T C A C G T A C G T A C G T
A C T G C T G A C T A G G T A C A G T C A G T C G A C T A G C T T C A G G A C T G A T C A G T C G T A C G A C T G C A T T C A G

PRDM1/MA0508.3/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCCCTTGCTCCT
-TTCTTTCTCTT
A C T G A G T C A G T C A G T C A C G T A C G T A C T G A G T C A C G T A G T C A G T C A C G T
A C G T G A C T G C A T G T A C C G A T G C A T C G A T G T A C C G A T G T A C G A C T G A C T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GCCCTTGCTCCT
BNTGDCCTTG-----
A C G T A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T A C T G A G T C A C G T A G T C A G T C A C G T
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T A C G T

PB0137.1_Irf3_2/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GCCCTTGCTCCT
NNGCACCTTTCTCC-
A C G T A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T A C T G A G T C A C G T A G T C A G T C A C G T
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C A C G T

NR5A1/MA1540.1/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GCCCTTGCTCCT
NTGACCTTGAN---
A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T A C T G A G T C A C G T A G T C A G T C A C G T
C T A G G A C T T C A G C T G A A G T C G T A C G C A T G A C T T A C G C T G A T G A C A C G T A C G T A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GCCCTTGCTCCT
--CNGTCCTCCC
A C T G A G T C A G T C A G T C A C G T A C G T A C T G A G T C A C G T A G T C A G T C A C G T
A C G T A C G T A T G C T C G A T A C G A C G T A T G C A G T C A C G T A G T C A G T C G A T C

POL013.1_MED-1/Jaspar

Match Rank:7
Score:0.58
Offset:6
Orientation:forward strand
Alignment:GCCCTTGCTCCT
------GCTCCG
A C T G A G T C A G T C A G T C A C G T A C G T A C T G A G T C A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCCCTTGCTCCT
-YCTTTGTTCC-
A C T G A G T C A G T C A G T C A C G T A C G T A C T G A G T C A C G T A G T C A G T C A C G T
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T

RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCCCTTGCTCCT
TGACCTTGACCT-
A C G T A C T G A G T C A G T C A G T C A C G T A C G T A C T G A G T C A C G T A G T C A G T C A C G T
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCCCTTGCTCCT
TGACCTTGACCT-
A C G T A C T G A G T C A G T C A G T C A C G T A C G T A C T G A G T C A C G T A G T C A G T C A C G T
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T