Information for 17-CACTCGTAAC (Motif 27)

A G T C C G T A A G T C A C G T A G T C A C T G A C G T C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T C G T A A G T C A C T G C G T A A C T G A C G T A C T G
p-value:1e-3
log p-value:-7.598e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif7.14%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets169.0 +/- 0.0bp
Average Position of motif in Background159.8 +/- 32.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CACTCGTAAC--
-GCTCGTAAAAA
A G T C C G T A A G T C A C G T A G T C A C T G A C G T C G T A C G T A A G T C A C G T A C G T
A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CACTCGTAAC----
AAACCTCGTAAAATTT
A C G T A C G T A G T C C G T A A G T C A C G T A G T C A C T G A C G T C G T A C G T A A G T C A C G T A C G T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

HOXA9/MA0594.2/Jaspar

Match Rank:3
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CACTCGTAAC--
--GTCGTAAACG
A G T C C G T A A G T C A C G T A G T C A C T G A C G T C G T A C G T A A G T C A C G T A C G T
A C G T A C G T T C A G G A C T G T A C T C A G A G C T G C T A G C T A G C T A G A T C T A C G

HOXD12/MA0873.1/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CACTCGTAAC--
-AGTCGTAAAAA
A G T C C G T A A G T C A C G T A G T C A C T G A C G T C G T A C G T A A G T C A C G T A C G T
A C G T T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

PH0068.1_Hoxc13/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CACTCGTAAC----
AAAGCTCGTAAAATTT
A C G T A C G T A G T C C G T A A G T C A C G T A G T C A C T G A C G T C G T A C G T A A G T C A C G T A C G T A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

HOXC12/MA0906.1/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CACTCGTAAC--
-GGTCGTAAAAA
A G T C C G T A A G T C A C G T A G T C A C T G A C G T C G T A C G T A A G T C A C G T A C G T
A C G T C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A

Hoxa11/MA0911.1/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CACTCGTAAC---
-GGTCGTAAAATT
A G T C C G T A A G T C A C G T A G T C A C T G A C G T C G T A C G T A A G T C A C G T A C G T A C G T
A C G T C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T

TFEC/MA0871.2/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CACTCGTAAC-
CCCACGTGACC
A G T C C G T A A G T C A C G T A G T C A C T G A C G T C G T A C G T A A G T C A C G T
G T A C T A G C A T G C C G T A A G T C C T A G A C G T A T C G T G C A A G T C T G A C

NKX2-8/MA0673.1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CACTCGTAAC
CCACTTGAA--
A C G T A G T C C G T A A G T C A C G T A G T C A C T G A C G T C G T A C G T A A G T C
T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T A C G T

HOXC11/MA0651.1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CACTCGTAAC--
-GGTCGTAAAAT
A G T C C G T A A G T C A C G T A G T C A C T G A C G T C G T A C G T A A G T C A C G T A C G T
A C G T C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T