Information for 16-CCCTTAGACAAC (Motif 16)

A G T C A G T C A G T C A C G T A C G T C G T A A C T G C G T A A G T C C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T A C T G A C G T A G T C A C G T C G T A C G T A A C T G A C T G A C T G
p-value:1e-4
log p-value:-1.099e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets164.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CCCTTAGACAAC
BCMATTAG-----
A C G T A G T C A G T C A G T C A C G T A C G T C G T A A C T G C G T A A G T C C G T A C G T A A G T C
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CCCTTAGACAAC
---BCAGACWA-
A G T C A G T C A G T C A C G T A C G T C G T A A C T G C G T A A G T C C G T A C G T A A G T C
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer

Match Rank:3
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCCTTAGACAAC
--VTTRCATAAY
A G T C A G T C A G T C A C G T A C G T C G T A A C T G C G T A A G T C C G T A C G T A A G T C
A C G T A C G T T C A G G A C T A C G T C T G A G A T C T C G A G A C T G T C A C T G A A G T C

Isl1/MA1608.1/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCCTTAGACAAC
ATCCATTAGCA---
A C G T A C G T A G T C A G T C A G T C A C G T A C G T C G T A A C T G C G T A A G T C C G T A C G T A A G T C
C T G A A C G T G A T C G T A C C T G A G C A T G A C T G C T A C T A G A G T C T G C A A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CCCTTAGACAAC-----
--CTCACACAATGGCGC
A G T C A G T C A G T C A C G T A C G T C G T A A C T G C G T A A G T C C G T A C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

PB0166.1_Sox12_2/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CCCTTAGACAAC-----
-AAACAGACAAAGGAAT
A G T C A G T C A G T C A C G T A C G T C G T A A C T G C G T A A G T C C G T A C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

HLF/MA0043.3/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCCTTAGACAAC--
TTGTTATGCAACAA
A G T C A G T C A G T C A C G T A C G T C G T A A C T G C G T A A G T C C G T A C G T A A G T C A C G T A C G T
C G A T C A G T T C A G G C A T C A G T C T G A A G C T C T A G G A T C G T C A C T G A A G T C G T C A C G T A

TFAP2A/MA0003.4/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CCCTTAGACAAC
NNGCCTGAGGCANN
A C G T A C G T A G T C A G T C A G T C A C G T A C G T C G T A A C T G C G T A A G T C C G T A C G T A A G T C
A C G T C A T G A T C G T A G C A T G C A G C T A T C G T C G A T C A G A C T G T A G C G T C A T C G A A C G T

FOXN3/MA1489.1/Jaspar

Match Rank:9
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CCCTTAGACAAC
---GTAAACAA-
A G T C A G T C A G T C A C G T A C G T C G T A A C T G C G T A A G T C C G T A C G T A A G T C
A C G T A C G T A C G T A C T G A C G T C G T A C G T A C G T A A G T C C G T A C G T A A C G T

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CCCTTAGACAAC
TGCCCCCGGGCA--
A C G T A C G T A G T C A G T C A G T C A C G T A C G T C G T A A C T G C G T A A G T C C G T A C G T A A G T C
G A C T T A C G T A G C A G T C A G T C A G T C T G A C T C A G T C A G A T C G A T G C C T G A A C G T A C G T