Information for 12-GATAGTCAAG (Motif 31)

A C T G C G T A A C G T C G T A A C T G A C G T A G T C C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A C T G C G T A A G T C A C G T C G T A A C G T A G T C
p-value:1e-3
log p-value:-7.406e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif22.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets115.0 +/- 0.0bp
Average Position of motif in Background99.0 +/- 144.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e1/MA0676.1/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GATAGTCAAG
AAAAGTCAA-
A C T G C G T A A C G T C G T A A C T G A C G T A G T C C G T A C G T A A C T G
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T

Pax2/MA0067.1/Jaspar

Match Rank:2
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GATAGTCAAG-
---AGTCACGC
A C T G C G T A A C G T C G T A A C T G A C G T A G T C C G T A C G T A A C T G A C G T
A C G T A C G T A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GATAGTCAAG---
--AAGGCAAGTGT
A C T G C G T A A C G T C G T A A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

HMBOX1/MA0895.1/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GATAGTCAAG
ACTAGTTAAC
A C T G C G T A A C G T C G T A A C T G A C G T A G T C C G T A C G T A A C T G
T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

PH0171.1_Nkx2-1/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GATAGTCAAG-------
-AANTTCAAGTGGCTTN
A C T G C G T A A C G T C G T A A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A

PH0113.1_Nkx2-4/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GATAGTCAAG-------
-AATTTCAAGTGGCTTN
A C T G C G T A A C G T C G T A A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A

NR6A1/MA1541.1/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GATAGTCAAG-----
GTCAAGTTCAAGGTCAA
A C G T A C G T A C T G C G T A A C G T C G T A A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C T G A G C T A T G C C T G A T G C A C A T G C A G T A G C T A G T C C G T A G T C A C A T G C A T G A C G T A G T C C T G A C G T A

PH0168.1_Hnf1b/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---GATAGTCAAG----
ANNNCTAGTTAACNGNN
A C G T A C G T A C G T A C T G C G T A A C G T C G T A A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:9
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GATAGTCAAG----
----NTCAAGGTCA
A C T G C G T A A C G T C G T A A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:10
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GATAGTCAAG----
----BTCAAGGTCA
A C T G C G T A A C G T C G T A A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A