Information for 17-CGGTCCAT (Motif 39)

A G T C A C T G A C T G G A C T A G T C A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G A C T G C T G A A G T C A G T C A C T G
p-value:1e-3
log p-value:-8.114e+00
Information Content per bp:1.957
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif25.7
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets98.9 +/- 47.6bp
Average Position of motif in Background99.6 +/- 53.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CGGTCCAT-
-RRTCAATA
A G T C A C T G A C T G G A C T A G T C A G T C C G T A A C G T A C G T
A C G T C T A G C T G A A G C T G T A C C T G A C G T A A C G T C G T A

HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CGGTCCAT-
GCGGACCBWA
A C G T A G T C A C T G A C T G G A C T A G T C A G T C C G T A A C G T A C G T
A T C G G T A C A C T G A C T G G T C A A T G C A T G C A T G C G C T A T C G A

PB0137.1_Irf3_2/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CGGTCCAT-----
NNGCACCTTTCTCC
A C G T A G T C A C T G A C T G G A C T A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C

Isl1/MA1608.1/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CGGTCCAT-----
--ATCCATTAGCA
A G T C A C T G A C T G G A C T A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A A C G T G A T C G T A C C T G A G C A T G A C T G C T A C T A G A G T C T G C A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CGGTCCAT----
--GGCCATTAAC
A G T C A C T G A C T G G A C T A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

PB0030.1_Hnf4a_1/Jaspar

Match Rank:6
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------CGGTCCAT---
CTCCAGGGGTCAATTGA
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C T G G A C T A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

NR1H4/MA1110.1/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CGGTCCAT--
NAGGTCATTGA
A C G T A G T C A C T G A C T G G A C T A G T C A G T C C G T A A C G T A C G T A C G T
C G A T T C G A C A T G C A T G A C G T G A T C T C G A A G C T G C A T T C A G T G C A

HLTF/MA0109.1/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CGGTCCAT----
--AACCTTATAT
A G T C A C T G A C T G G A C T A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A G C T A G T A C A G T C C G A T A C G T C G T A A C G T T C G A G A C T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CGGTCCAT--
DGATCRATAN
A G T C A C T G A C T G G A C T A G T C A G T C C G T A A C G T A C G T A C G T
C T A G C T A G C T G A A C G T A G T C C T A G C G T A A C G T G T C A G A T C

PH0141.1_Pknox2/Jaspar

Match Rank:10
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------CGGTCCAT--
AAGCACCTGTCAATAT
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C T G G A C T A G T C A G T C C G T A A C G T A C G T A C G T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T