Information for 25-ATAAATGCCTAA (Motif 23)

C G T A A C G T C G T A C G T A C G T A A C G T A C T G A G T C A G T C A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A A C T G A C T G A G T C C G T A A C G T A C G T A C G T C G T A A C G T
p-value:1e-4
log p-value:-9.666e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets144.0 +/- 0.0bp
Average Position of motif in Background27.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0148.1_Pou3f3/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-ATAAATGCCTAA----
AAAATATGCATAATAAA
A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C T G A G T C A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

BARHL2/MA0635.1/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-ATAAATGCCTAA
GCTAAACGGT---
A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C T G A G T C A G T C A C G T C G T A C G T A
T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T A C G T A C G T A C G T

PH0130.1_Otx2/Jaspar

Match Rank:3
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----ATAAATGCCTAA-
GANNATTAATCCCTNNN
A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C T G A G T C A G T C A C G T C G T A C G T A A C G T
C A T G G T C A G A T C C T G A T C G A G A C T C G A T C G T A C G T A C A G T G A T C A G T C A G T C A G C T G C T A G A T C G T C A

POL012.1_TATA-Box/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--ATAAATGCCTAA-
GTATAAAAGGCGGGG
A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C T G A G T C A G T C A C G T C G T A C G T A A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--ATAAATGCCTAA-
GTATAAAAGGCGGGG
A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C T G A G T C A G T C A C G T C G T A C G T A A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

ISL2/MA0914.1/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:ATAAATGCCTAA
TTAAGTGC----
C G T A A C G T C G T A C G T A C G T A A C G T A C T G A G T C A G T C A C G T C G T A C G T A
G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C A C G T A C G T A C G T A C G T

PH0138.1_Pitx2/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----ATAAATGCCTAA-
GNNNATTAATCCCTNCN
A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C T G A G T C A G T C A C G T C G T A C G T A A C G T
C T A G G C T A G A C T C T A G C T G A G A C T C G A T C G T A C T G A A C G T G A T C A G T C A G T C A G C T G C A T G T A C G T C A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:8
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----ATAAATGCCTAA
NGYCATAAAWCH----
A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C T G A G T C A G T C A C G T C G T A C G T A
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T A C G T A C G T

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:ATAAATGCCTAA--
-TTAATGTTTAACC
C G T A A C G T C G T A C G T A C G T A A C G T A C T G A G T C A G T C A C G T C G T A C G T A A C G T A C G T
A C G T A C G T G C A T C T G A G T C A G C A T T A C G C G A T C A G T G A C T G C T A C G T A G A T C G A T C

HNF1A/MA0046.2/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-ATAAATGCCTAA--
AGTTAATGATTAACT
A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C T G A G T C A G T C A C G T C G T A C G T A A C G T A C G T
C T G A C T A G A G C T G C A T C T G A G T C A G C A T T A C G C G T A C A G T G A C T C G T A T C G A G T A C G C A T