Information for 2-BTGAVATTCASV (Motif 2)

A C G T C G A T T C A G C T G A T C A G C G T A A G C T G A C T A G T C T C G A A T G C T A G C
Reverse Opposite:
A C T G A T C G A G C T T A C G C G T A T C G A C G A T A G T C G A C T A G T C C G T A T G C A
p-value:1e-6
log p-value:-1.415e+01
Information Content per bp:1.569
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif40.00%
Number of Background Sequences with motif669.9
Percentage of Background Sequences with motif0.77%
Average Position of motif in Targets78.0 +/- 60.9bp
Average Position of motif in Background100.2 +/- 81.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.66
Offset:3
Orientation:forward strand
Alignment:BTGAVATTCASV-----
---ACATTCATGACACG
A C G T C G A T T C A G C T G A T C A G C G T A A G C T G A C T A G T C T C G A A T G C T A G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-BTGAVATTCASV
SCTGTCAVTCAV-
A C G T A C G T C G A T T C A G C T G A T C A G C G T A A G C T G A C T A G T C T C G A A T G C T A G C
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-BTGAVATTCASV
NCTGTCAATCAN-
A C G T A C G T C G A T T C A G C T G A T C A G C G T A A G C T G A C T A G T C T C G A A T G C T A G C
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-BTGAVATTCASV----
GACCACATTCATACAAT
A C G T A C G T C G A T T C A G C T G A T C A G C G T A A G C T G A C T A G T C T C G A A T G C T A G C A C G T A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

PKNOX1/MA0782.2/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---BTGAVATTCASV
NNGCTGTCACTCANN
A C G T A C G T A C G T A C G T C G A T T C A G C T G A T C A G C G T A A G C T G A C T A G T C T C G A A T G C T A G C
G A C T T C G A A T C G T G A C G C A T C T A G G A C T T A G C G C T A T G A C G A C T A G T C G C T A C G T A G C T A

PBX3/MA1114.1/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----BTGAVATTCASV-
NNNCCTGTCACTCANNN
A C G T A C G T A C G T A C G T A C G T C G A T T C A G C T G A T C A G C G T A A G C T G A C T A G T C T C G A A T G C T A G C A C G T
T A G C A G T C T A C G A T G C T G A C G A C T A T C G G A C T A T G C G T C A T G A C G C A T A G T C G C T A T G A C T G A C A T G C

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--BTGAVATTCASV
GSCTGTCACTCA--
A C G T A C G T A C G T C G A T T C A G C T G A T C A G C G T A A G C T G A C T A G T C T C G A A T G C T A G C
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T

PB0169.1_Sox15_2/Jaspar

Match Rank:8
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----BTGAVATTCASV
TTGAATGAAATTCGA-
A C G T A C G T A C G T A C G T A C G T C G A T T C A G C T G A T C A G C G T A A G C T G A C T A G T C T C G A A T G C T A G C
A C G T A C G T T C A G C T G A G T C A A G C T A C T G C G T A G T C A C T G A C A G T G A C T G A T C T A C G T C G A A C G T

PB0171.1_Sox18_2/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--BTGAVATTCASV--
NNNNTGAATTCANNNC
A C G T A C G T A C G T C G A T T C A G C T G A T C A G C G T A A G C T G A C T A G T C T C G A A T G C T A G C A C G T A C G T
A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C

FOS/MA0476.1/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:BTGAVATTCASV
-TGTGACTCATT
A C G T C G A T T C A G C T G A T C A G C G T A A G C T G A C T A G T C T C G A A T G C T A G C
A C G T C A G T T A C G A C G T A C T G C G T A A T G C A C G T A G T C C G T A A G C T A G C T