Information for 3-CACACACATTGT (Motif 5)

A G T C C G T A A G T C C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C T G A C G T
Reverse Opposite:
C G T A A G T C C G T A C G T A A C G T A C T G A C G T A C T G A C G T A C T G A C G T A C T G
p-value:1e-4
log p-value:-9.808e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets133.0 +/- 0.0bp
Average Position of motif in Background22.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17/MA0078.1/Jaspar

Match Rank:1
Score:0.68
Offset:4
Orientation:forward strand
Alignment:CACACACATTGT-
----CTCATTGTC
A G T C C G T A A G T C C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C

SOX13/MA1120.1/Jaspar

Match Rank:2
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CACACACATTGT--
---NNCCATTGTNN
A G T C C G T A A G T C C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T C G A T A C T G A G T C G A T C C G T A G A C T C G A T T C A G G A C T A G C T G A C T

SOX2/MA0143.4/Jaspar

Match Rank:3
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CACACACATTGT--
---NNCCATTGTNN
A G T C C G T A A G T C C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T C G A T G C A T G A T C G A T C G C T A A G C T C G A T C T A G C G A T G C A T G C A T

PB0183.1_Sry_2/Jaspar

Match Rank:4
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CACACACATTGT-------
--CNNNTATTGTTCNNNNN
A G T C C G T A A G T C C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.62
Offset:5
Orientation:forward strand
Alignment:CACACACATTGT---
-----CCATTGTTYB
A G T C C G T A A G T C C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

SOX21/MA0866.1/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CACACACATTGT-
AACACTACCATTGTT
A C G T A C G T A G T C C G T A A G T C C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C T G A C G T A C G T
T C G A G T C A G A T C G C T A G T A C A G C T C T G A G T A C G T A C G T C A A G C T A G C T T A C G A G C T G A C T

Sox1/MA0870.1/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CACACACATTGT-
AACAATAACATTGTT
A C G T A C G T A G T C C G T A A G T C C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C T G A C G T A C G T
T G C A G C T A A G T C G T C A G T C A C G A T C G T A T C G A A T G C C G T A A C G T A G C T A C T G G A C T A G C T

GLI2/MA0734.2/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CACACACATTGT
AGACCACCCACGTCG-
A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C T G A C G T
T G C A A C T G T G C A A G T C A G T C G T C A A G T C G T A C G T A C C T G A G T A C T A C G C G A T G A T C A T C G A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.60
Offset:5
Orientation:forward strand
Alignment:CACACACATTGT---
-----CCWTTGTYYB
A G T C C G T A A G T C C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer

Match Rank:10
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:CACACACATTGT-----
-----CCATTGTTYYBB
A G T C C G T A A G T C C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G T A A C G T A C G T A C T G A C G T A G C T A G C T A G T C A T C G A C T G