Information for 2-RAGTACTCAGAA (Motif 2)

C T G A C G T A A T C G A G C T G T C A A G T C A C G T A G T C C G T A A C T G C T G A G T C A
Reverse Opposite:
A C G T A G C T A G T C A C G T T C A G C G T A C T A G C A G T C T G A T A G C A C G T G A C T
p-value:1e-8
log p-value:-2.028e+01
Information Content per bp:1.764
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif30.77%
Number of Background Sequences with motif75.5
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets124.8 +/- 34.3bp
Average Position of motif in Background89.0 +/- 65.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0117.1_Nkx3-1/Jaspar

Match Rank:1
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----RAGTACTCAGAA-
TACTAAGTACTTAAATG
A C G T A C G T A C G T A C G T C T G A C G T A A T C G A G C T G T C A A G T C A C G T A G T C C G T A A C T G C T G A G T C A A C G T
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:2
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----RAGTACTCAGAA
ACTCCAAGTACTTGGAA
A C G T A C G T A C G T A C G T A C G T C T G A C G T A A T C G A G C T G T C A A G T C A C G T A G T C C G T A A C T G C T G A G T C A
T C G A G T A C C G A T A T G C T A G C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A C T G T C A G T G C A G T C A

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:3
Score:0.70
Offset:1
Orientation:forward strand
Alignment:RAGTACTCAGAA-
-NTTTCTNAGAAA
C T G A C G T A A T C G A G C T G T C A A G T C A C G T A G T C C G T A A C T G C T G A G T C A A C G T
A C G T C T G A A C G T A C G T A C G T A G T C G A C T C G A T C T G A A C T G C G T A C G T A T C G A

PH0116.1_Nkx2-9/Jaspar

Match Rank:4
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----RAGTACTCAGAA
NATTTAAGTACTTNAAA
A C G T A C G T A C G T A C G T A C G T C T G A C G T A A T C G A G C T G T C A A G T C A C G T A G T C C G T A A C T G C T G A G T C A
C T G A G C T A C G A T G C A T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T G C T A C G T A C T G A G C T A

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:RAGTACTCAGAA
AAGCACTTAA--
C T G A C G T A A T C G A G C T G T C A A G T C A C G T A G T C C G T A A C T G C T G A G T C A
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T

PH0112.1_Nkx2-3/Jaspar

Match Rank:6
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----RAGTACTCAGAA
CNTTAAGTACTTAANG
A C G T A C G T A C G T A C G T C T G A C G T A A T C G A G C T G T C A A G T C A C G T A G T C C G T A A C T G C T G A G T C A
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G

Stat5b/MA1625.1/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:RAGTACTCAGAA---
CATTTCCCAGAAATC
C T G A C G T A A T C G A G C T G T C A A G T C A C G T A G T C C G T A A C T G C T G A G T C A A C G T A C G T A C G T
A G T C C T G A G C A T A G C T C G A T G A T C G A T C G T A C C T G A A C T G C T G A T C G A T C G A G C A T T A G C

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:RAGTACTCAGAA
-ATTTCCAAGAA
C T G A C G T A A T C G A G C T G T C A A G T C A C G T A G T C C G T A A C T G C T G A G T C A
A C G T C T G A A G C T A C G T A G C T A G T C G A T C G T C A C T G A A C T G G C T A C T G A

ZNF274/MA1592.1/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---RAGTACTCAGAA-
NNCGAGAACTCATACN
A C G T A C G T A C G T C T G A C G T A A T C G A G C T G T C A A G T C A C G T A G T C C G T A A C T G C T G A G T C A A C G T
G T C A T C A G G A T C C T A G C G T A C A T G C T G A G T C A A T G C G A C T A G T C T G C A G A C T T C G A A G T C G A T C

STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer

Match Rank:10
Score:0.60
Offset:2
Orientation:forward strand
Alignment:RAGTACTCAGAA
--TTCCKNAGAA
C T G A C G T A A T C G A G C T G T C A A G T C A C G T A G T C C G T A A C T G C T G A G T C A
A C G T A C G T G A C T C A G T G A T C G A T C A C G T G A T C C T G A T A C G C G T A G T C A