Information for 4-CTTGTCACGA (Motif 17)

A G T C A C G T A C G T A C T G A C G T A G T C C G T A A G T C A C T G C G T A
Reverse Opposite:
A C G T A G T C A C T G A C G T A C T G C G T A A G T C C G T A C G T A A C T G
p-value:1e-3
log p-value:-8.386e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif6.67%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets87.0 +/- 0.0bp
Average Position of motif in Background87.8 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer

Match Rank:1
Score:0.75
Offset:1
Orientation:forward strand
Alignment:CTTGTCACGA---
-NHRTCACGACDN
A G T C A C G T A C G T A C T G A C G T A G T C C G T A A G T C A C T G C G T A A C G T A C G T A C G T
A C G T T C A G G C T A T C A G C A G T T G A C G T C A A G T C A T C G T G C A G T A C C A G T G A T C

MEIS3/MA0775.1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CTTGTCACGA
CCTGTCAA--
A G T C A C G T A C G T A C T G A C G T A G T C C G T A A G T C A C T G C G T A
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T

NFIC/MA0161.2/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CTTGTCACGA
TACTTGGCAGA-
A C G T A C G T A G T C A C G T A C G T A C T G A C G T A G T C C G T A A G T C A C T G C G T A
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CTTGTCACGA
-NTGTCAN--
A G T C A C G T A C G T A C T G A C G T A G T C C G T A A G T C A C T G C G T A
A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:5
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CTTGTCACGA
--AGTCACGC
A G T C A C G T A C G T A C T G A C G T A G T C C G T A A G T C A C T G C G T A
A C G T A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G

ZBED1/MA0749.1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTTGTCACGA---
TATGTCGCGATAG
A G T C A C G T A C G T A C T G A C G T A G T C C G T A A G T C A C T G C G T A A C G T A C G T A C G T
G A C T T G C A C G A T C T A G A G C T A G T C C T A G A G T C T C A G C T G A A G C T G C T A C A T G

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTTGTCACGA
NNTTGGCANN-
A C G T A G T C A C G T A C G T A C T G A C G T A G T C C G T A A G T C A C T G C G T A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CTTGTCACGA
-YTGWCADY-
A G T C A C G T A C G T A C T G A C G T A G T C C G T A A G T C A C T G C G T A
A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C A C G T

TFEC/MA0871.2/Jaspar

Match Rank:9
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CTTGTCACGA---
--NGTCACGTGNN
A G T C A C G T A C G T A C T G A C G T A G T C C G T A A G T C A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C T G T C A G A C G T A T G C C G T A A G T C C T A G G C A T A T C G A T C G C A T G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTTGTCACGA
CTTGGCAA--
A G T C A C G T A C G T A C T G A C G T A G T C C G T A A G T C A C T G C G T A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T