Information for 2-GAGAGGATTARR (Motif 2)

A C T G C G T A A C T G C G T A A C T G T C A G T G C A A C G T C G A T C G T A C T A G T C G A
Reverse Opposite:
A G C T G A T C G C A T G C T A G T C A A C G T A G T C T G A C A C G T G T A C C G A T G T A C
p-value:1e-11
log p-value:-2.647e+01
Information Content per bp:1.695
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif6.36%
Number of Background Sequences with motif614.0
Percentage of Background Sequences with motif1.27%
Average Position of motif in Targets95.4 +/- 49.9bp
Average Position of motif in Background99.3 +/- 62.6bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Crx/MA0467.1/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GAGAGGATTARR
AAGAGGATTAG-
A C T G C G T A A C T G C G T A A C T G T C A G T G C A A C G T C G A T C G T A C T A G T C G A
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T

ZNF263/MA0528.2/Jaspar

Match Rank:2
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GAGAGGATTARR
GGGGGGAGGAGG---
A C G T A C G T A C G T A C T G C G T A A C T G C G T A A C T G T C A G T G C A A C G T C G A T C G T A C T A G T C G A
T C A G A T C G C T A G T A C G A T C G A C T G G T C A A C T G A T C G T G C A T A C G A T C G A C G T A C G T A C G T

OTX2/MA0712.2/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GAGAGGATTARR-
-AAGGGATTAGAA
A C T G C G T A A C T G C G T A A C T G T C A G T G C A A C G T C G A T C G T A C T A G T C G A A C G T
A C G T G C T A C G T A C T A G C T A G C T A G G T C A C A G T G C A T C G T A C T A G C G T A C G T A

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:4
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GAGAGGATTARR
--VRGGATTARN
A C T G C G T A A C T G C G T A A C T G T C A G T G C A A C G T C G A T C G T A C T A G T C G A
A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

GSC2/MA0891.1/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GAGAGGATTARR
--GNGGATTAGN
A C T G C G T A A C T G C G T A A C T G T C A G T G C A A C G T C G A T C G T A C T A G T C G A
A C G T A C G T C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G

PB0140.1_Irf6_2/Jaspar

Match Rank:6
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------GAGAGGATTARR
NNNACCGAGAGTNNN---
A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G C G T A A C T G T C A G T G C A A C G T C G A T C G T A C T A G T C G A
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GAGAGGATTARR
CTTGAGTGGCT----
A C G T A C G T A C G T A C T G C G T A A C T G C G T A A C T G T C A G T G C A A C G T C G A T C G T A C T A G T C G A
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T A C G T A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GAGAGGATTARR
GGGAGGACNG--
A C T G C G T A A C T G C G T A A C T G T C A G T G C A A C G T C G A T C G T A C T A G T C G A
C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G A C G T A C G T

PH0129.1_Otx1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GAGAGGATTARR----
AGAGGGGATTAATTTAT
A C G T A C T G C G T A A C T G C G T A A C T G T C A G T G C A A C G T C G A T C G T A C T A G T C G A A C G T A C G T A C G T A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

Dmbx1/MA0883.1/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GAGAGGATTARR---
TGAACCGGATTAATGAA
A C G T A C G T A C T G C G T A A C T G C G T A A C T G T C A G T G C A A C G T C G A T C G T A C T A G T C G A A C G T A C G T A C G T
G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A