Information for 3-GTTAGASTCTAA (Motif 5)

A C T G A C G T A C G T C G T A A C T G C G T A A T G C A C G T A G T C A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A A C T G C G T A A T C G A C G T A G T C A C G T C G T A C G T A G T A C
p-value:1e-15
log p-value:-3.496e+01
Information Content per bp:1.949
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets67.8 +/- 39.8bp
Average Position of motif in Background40.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GTTAGASTCTAA
GGTTAAACATTAA
A C G T A C T G A C G T A C G T C G T A A C T G C G T A A T G C A C G T A G T C A C G T C G T A C G T A
C T A G C T A G G C A T C G A T C T G A G T C A G C T A A T G C C G T A C A G T G A C T C G T A T G C A

PB0134.1_Hnf4a_2/Jaspar

Match Rank:2
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GTTAGASTCTAA---
GGCAAAAGTCCAATAA
A C G T A C T G A C G T A C G T C G T A A C T G C G T A A T G C A C G T A G T C A C G T C G T A C G T A A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:3
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GTTAGASTCTAA
GGTTAGAGACCT-
A C G T A C T G A C G T A C G T C G T A A C T G C G T A A T G C A C G T A G T C A C G T C G T A C G T A
C T A G T A C G C G A T A C G T C G T A T C A G C T G A T C A G G T C A T G A C A G T C G A C T A C G T

PB0174.1_Sox30_2/Jaspar

Match Rank:4
Score:0.51
Offset:1
Orientation:forward strand
Alignment:GTTAGASTCTAA-----
-TAAGATTATAATACGG
A C T G A C G T A C G T C G T A A C T G C G T A A T G C A C G T A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G

DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer

Match Rank:5
Score:0.48
Offset:-2
Orientation:forward strand
Alignment:--GTTAGASTCTAA-
YDGHTACAWTGTADC
A C G T A C G T A C T G A C G T A C G T C G T A A C T G C G T A A T G C A C G T A G T C A C G T C G T A C G T A A C G T
G A C T C G A T C A T G G C T A G C A T C G T A A G T C G C T A G C A T C G A T T A C G G C A T C G T A C A G T G A T C

HNF1B/MA0153.2/Jaspar

Match Rank:6
Score:0.48
Offset:0
Orientation:forward strand
Alignment:GTTAGASTCTAA-
GTTAATGATTAAC
A C T G A C G T A C G T C G T A A C T G C G T A A T G C A C G T A G T C A C G T C G T A C G T A A C G T
C A T G A G C T G C A T C T G A G T C A G C A T T A C G C G T A C A G T G A C T C T G A T C G A G A T C

HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer

Match Rank:7
Score:0.48
Offset:0
Orientation:forward strand
Alignment:GTTAGASTCTAA
GTTAATNATTAA
A C T G A C G T A C G T C G T A A C T G C G T A A T G C A C G T A G T C A C G T C G T A C G T A
C T A G A C G T G C A T T C G A G T C A G C A T A T C G C G T A C A G T A G C T C T G A T G C A

HNF1A/MA0046.2/Jaspar

Match Rank:8
Score:0.47
Offset:-1
Orientation:reverse strand
Alignment:-GTTAGASTCTAA--
NGTTAATNATTAACN
A C G T A C T G A C G T A C G T C G T A A C T G C G T A A T G C A C G T A G T C A C G T C G T A C G T A A C G T A C G T
C G T A C A T G A G C T G C A T C T G A G T C A G C A T A T G C C G T A C A G T G A C T C G T A T C G A G A T C G A C T

DMRTA2/MA1478.1/Jaspar

Match Rank:9
Score:0.47
Offset:-4
Orientation:forward strand
Alignment:----GTTAGASTCTAA
AATTGTTACATT----
A C G T A C G T A C G T A C G T A C T G A C G T A C G T C G T A A C T G C G T A A T G C A C G T A G T C A C G T C G T A C G T A
G C T A C G T A G C A T A G C T A C T G G C A T G C A T C T G A A G T C C G T A C G A T A C G T A C G T A C G T A C G T A C G T

PB0125.1_Gata3_2/Jaspar

Match Rank:10
Score:0.47
Offset:-6
Orientation:reverse strand
Alignment:------GTTAGASTCTAA----
NNNNNCGATANNATCTNNNNAN
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C G T C G T A A C T G C G T A A T G C A C G T A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T
C A G T C G T A C G T A T A C G A G C T G A T C C T A G T C G A A G C T C T G A T G C A C G T A C T G A C A G T G A T C C G A T T C G A A G T C G C T A C G T A T G C A C T G A