Information for 13-TAGTTGGGTC (Motif 32)

A C G T C G T A A C T G A C G T A C G T A C T G A C T G A C T G A C G T A G T C
Reverse Opposite:
A C T G C G T A A G T C A G T C A G T C C G T A C G T A A G T C A C G T C G T A
p-value:1e-3
log p-value:-6.925e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif9.09%
Number of Background Sequences with motif7.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets148.0 +/- 0.0bp
Average Position of motif in Background77.4 +/- 67.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0157.1_Rara_2/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TAGTTGGGTC-----
AGAGCGGGGTCAAGTA
A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G A C T G A C G T A G T C A C G T A C G T A C G T A C G T A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

RORC/MA1151.1/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TAGTTGGGTC-
ATAAGTAGGTCA
A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G A C T G A C G T A G T C A C G T
C T G A C G A T G C T A C G T A A C T G A C G T T C G A C A T G C T A G A C G T A G T C C T G A

RORA(var.2)/MA0072.1/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TAGTTGGGTC--
TATAAGTAGGTCAA
A C G T A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G A C T G A C G T A G T C A C G T A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

LHX2/MA0700.2/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TAGTTGGGTC
NNTAATTGGNN-
A C G T A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G A C T G A C G T A G T C
C G T A G C A T C G A T C G T A G C T A C G A T C G A T C T A G T A C G G C A T G C A T A C G T

RORB/MA1150.1/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TAGTTGGGTC--
-AATTAGGTCAC
A C G T C G T A A C T G A C G T A C G T A C T G A C T G A C T G A C G T A G T C A C G T A C G T
A C G T C G T A G C T A C G A T A C G T C T G A A C T G C T A G A G C T G A T C C T G A G A T C

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TAGTTGGGTC-
-AAYTAGGTCA
A C G T C G T A A C T G A C G T A C G T A C T G A C T G A C T G A C G T A G T C A C G T
A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:7
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TAGTTGGGTC-
-AAYTAGGTCA
A C G T C G T A A C T G A C G T A C G T A C T G A C T G A C T G A C G T A G T C A C G T
A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TAGTTGGGTC--
WAABTAGGTCAV
A C G T C G T A A C T G A C G T A C G T A C T G A C T G A C T G A C G T A G T C A C G T A C G T
C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G

MSX2/MA0708.1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TAGTTGGGTC
NTAATTGG---
A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G A C T G A C G T A G T C
A G C T C A G T T C G A C G T A A C G T C A G T C T A G A T C G A C G T A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TAGTTGGGTC-----
CGCGCCGGGTCACGTA
A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G A C T G A C G T A G T C A C G T A C G T A C G T A C G T A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A