Information for 4-AACCGGTGTTAA (Motif 4)

C G T A C G T A A G T C A G T C A C T G A T C G A C G T A C T G A C G T C A G T C T G A G T C A
Reverse Opposite:
C A G T A G C T G T C A C G T A T G A C C G T A T A G C T G A C C T A G T C A G C G A T G A C T
p-value:1e-4
log p-value:-1.050e+01
Information Content per bp:1.691
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif30.00%
Number of Background Sequences with motif527.7
Percentage of Background Sequences with motif0.62%
Average Position of motif in Targets124.7 +/- 56.0bp
Average Position of motif in Background101.2 +/- 75.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rhox11/MA0629.1/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AACCGGTGTTAA----
AAGACGCTGTAAAGCGA
A C G T C G T A C G T A A G T C A G T C A C T G A T C G A C G T A C T G A C G T C A G T C T G A G T C A A C G T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AACCGGTGTTAA----
AAGACGCTGTAAAGCGA
A C G T C G T A C G T A A G T C A G T C A C T G A T C G A C G T A C T G A C G T C A G T C T G A G T C A A C G T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0158.1_Rhox11_2/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AACCGGTGTTAA----
AGGACGCTGTAAAGGGA
A C G T C G T A C G T A A G T C A G T C A C T G A T C G A C G T A C T G A C G T C A G T C T G A G T C A A C G T A C G T A C G T A C G T
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

GRHL1/MA0647.1/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--AACCGGTGTTAA
NAAACCGGTTTT--
A C G T A C G T C G T A C G T A A G T C A G T C A C T G A T C G A C G T A C T G A C G T C A G T C T G A G T C A
G C T A C G T A C T G A C G T A A T G C G A T C C A T G A C T G G C A T G A C T G C A T C A G T A C G T A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AACCGGTGTTAA----
-NCNTTTGTTATTTNN
C G T A C G T A A G T C A G T C A C T G A T C G A C G T A C T G A C G T C A G T C T G A G T C A A C G T A C G T A C G T A C G T
A C G T A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T

MYF6/MA0667.1/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AACCGGTGTTAA
AACAGCTGTT--
C G T A C G T A A G T C A G T C A C T G A T C G A C G T A C T G A C G T C A G T C T G A G T C A
T C G A C T G A A T G C C G T A T C A G A G T C A G C T A C T G A G C T A G C T A C G T A C G T

PB0109.1_Bbx_2/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AACCGGTGTTAA------
-NNNNCTGTTAACNNTNN
C G T A C G T A A G T C A G T C A C T G A T C G A C G T A C T G A C G T C A G T C T G A G T C A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G T C G A T C T G C A C G T A T A G C A G C T C A T G C A G T A G C T C T G A G T C A G A T C T C G A C T G A C G A T A G T C C T G A

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:8
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:AACCGGTGTTAA-
---AGGTGTTAAT
C G T A C G T A A G T C A G T C A C T G A T C G A C G T A C T G A C G T C A G T C T G A G T C A A C G T
A C G T A C G T A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T

Tcf21/MA0832.1/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AACCGGTGTTAA
GCAACAGCTGTTGT
A C G T A C G T C G T A C G T A A G T C A G T C A C T G A T C G A C G T A C T G A C G T C A G T C T G A G T C A
T C A G G A T C C T G A G T C A A G T C G T C A A C T G A G T C A C G T A C T G A C G T G A C T T C A G A G C T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:10
Score:0.62
Offset:2
Orientation:forward strand
Alignment:AACCGGTGTTAA
--AAGGTGTKAA
C G T A C G T A A G T C A G T C A C T G A T C G A C G T A C T G A C G T C A G T C T G A G T C A
A C G T A C G T C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A