Information for 2-ACTGAATA (Motif 4)

C G T A G T A C A C G T A C T G C G T A C G T A C G A T C G T A
Reverse Opposite:
A C G T C G T A A C G T A C G T G T A C C G T A A C T G C G A T
p-value:1e-4
log p-value:-1.107e+01
Information Content per bp:1.885
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif57.14%
Number of Background Sequences with motif3103.8
Percentage of Background Sequences with motif2.63%
Average Position of motif in Targets75.0 +/- 48.6bp
Average Position of motif in Background100.7 +/- 87.1bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.72
Offset:1
Orientation:forward strand
Alignment:ACTGAATA---
-ATGMATATDC
C G T A G T A C A C G T A C T G C G T A C G T A C G A T C G T A A C G T A C G T A C G T
A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.71
Offset:1
Orientation:forward strand
Alignment:ACTGAATA---
-ATGAATATTC
C G T A G T A C A C G T A C T G C G T A C G T A C G A T C G T A A C G T A C G T A C G T
A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

PB0068.1_Sox1_1/Jaspar

Match Rank:3
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----ACTGAATA----
NNNTATTGAATTGNNN
A C G T A C G T A C G T A C G T C G T A G T A C A C G T A C T G C G T A C G T A C G A T C G T A A C G T A C G T A C G T A C G T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----ACTGAATA
HDGYAATGAAAN
A C G T A C G T A C G T A C G T C G T A G T A C A C G T A C T G C G T A C G T A C G A T C G T A
G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A

PB0178.1_Sox8_2/Jaspar

Match Rank:5
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----ACTGAATA-
NNTNTCATGAATGT
A C G T A C G T A C G T A C G T A C G T C G T A G T A C A C G T A C T G C G T A C G T A C G A T C G T A A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

NKX2-5/MA0063.2/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---ACTGAATA
ACCACTCAAAA
A C G T A C G T A C G T C G T A G T A C A C G T A C T G C G T A C G T A C G A T C G T A
T C G A T G A C G A T C C T G A G A T C G C A T G A T C C G T A G C T A T C G A G C T A

ONECUT1/MA0679.2/Jaspar

Match Rank:7
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----ACTGAATA----
AAAAAATCAATAAATA
A C G T A C G T A C G T A C G T C G T A G T A C A C G T A C T G C G T A C G T A C G A T C G T A A C G T A C G T A C G T A C G T
C G T A C G T A C G T A G C T A C T G A C T G A G C A T G T A C C T G A C G T A G A C T C T G A G C T A G C T A G C A T G C T A

PB0028.1_Hbp1_1/Jaspar

Match Rank:8
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------ACTGAATA--
ACTATGAATGAATGAT
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G T A C A C G T A C T G C G T A C G T A C G A T C G T A A C G T A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---ACTGAATA
GGYAATGAAA-
A C G T A C G T A C G T C G T A G T A C A C G T A C T G C G T A C G T A C G A T C G T A
C T A G T A C G G A C T T G C A T G C A C G A T T A C G C T G A T C G A C T G A A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----ACTGAATA-----
NTTNTATGAATGTGNNC
A C G T A C G T A C G T A C G T C G T A G T A C A C G T A C T G C G T A C G T A C G A T C G T A A C G T A C G T A C G T A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C