Information for 1-GAAGAGTG (Motif 36)

A C T G C T G A C T G A A C T G C G T A A C T G A C G T A C T G
Reverse Opposite:
A G T C C G T A A G T C A C G T A G T C A G C T A G C T A G T C
p-value:1e-2
log p-value:-5.715e+00
Information Content per bp:1.930
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif30.00%
Number of Background Sequences with motif2536.0
Percentage of Background Sequences with motif3.19%
Average Position of motif in Targets85.7 +/- 52.3bp
Average Position of motif in Background99.9 +/- 90.2bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)2.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MSANTD3/MA1523.1/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GAAGAGTG---
-GTGAGTGNAC
A C T G C T G A C T G A A C T G C G T A A C T G A C G T A C T G A C G T A C G T A C G T
A C G T C A T G C A G T C T A G C G T A C T A G G C A T C T A G A C G T T G C A T A G C

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GAAGAGTG---
-TTGAGTGSTT
A C T G C T G A C T G A A C T G C G T A A C T G A C G T A C T G A C G T A C G T A C G T
A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:3
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GAAGAGTG---
-TTRAGTGSYK
A C T G C T G A C T G A A C T G C G T A A C T G A C G T A C T G A C G T A C G T A C G T
A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

POL002.1_INR/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GAAGAGTG-
-NNNANTGA
A C T G C T G A C T G A A C T G C G T A A C T G A C G T A C T G A C G T
A C G T T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A

POL008.1_DCE_S_I/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GAAGAGTG
NGAAGC---
A C G T A C T G C T G A C T G A A C T G C G T A A C T G A C G T A C T G
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T

NKX2-2/MA1645.1/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GAAGAGTG----
NNNTTGAGTGGNNN
A C G T A C G T A C T G C T G A C T G A A C T G C G T A A C T G A C G T A C T G A C G T A C G T A C G T A C G T
C G A T C G A T A G T C A G C T C A G T T A C G C G T A C A T G C G A T C T A G A C T G G C A T C G A T C T G A

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GAAGAGTG---
CTTGAGTGGCT
A C T G C T G A C T G A A C T G C G T A A C T G A C G T A C T G A C G T A C G T A C G T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

PB0203.1_Zfp691_2/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GAAGAGTG-----
NTNNNAGGAGTCTCNTN
A C G T A C G T A C G T A C G T A C T G C T G A C T G A A C T G C G T A A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:9
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GAAGAGTG--
CTYRAGTGSY
A C T G C T G A C T G A A C T G C G T A A C T G A C G T A C T G A C G T A C G T
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

NKX2-5/MA0063.2/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GAAGAGTG--
NNTTGAGTGNN
A C G T A C T G C T G A C T G A A C T G C G T A A C T G A C G T A C T G A C G T A C G T
C G A T A G C T C G A T G C A T C T A G C G T A C T A G G A C T C T A G A C T G A G C T