Information for 2-AAGAAAGT (Motif 5)

C G T A C G T A A C T G C G T A C G T A C T G A A C T G C G A T
Reverse Opposite:
C G T A A G T C G A C T A C G T A C G T G T A C A C G T C G A T
p-value:1e-4
log p-value:-1.131e+01
Information Content per bp:1.847
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif81.82%
Number of Background Sequences with motif14148.8
Percentage of Background Sequences with motif19.02%
Average Position of motif in Targets117.3 +/- 54.5bp
Average Position of motif in Background99.3 +/- 72.3bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM1/MA0508.3/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--AAGAAAGT-
NAGAGAAAGNA
A C G T A C G T C G T A C G T A A C T G C G T A C G T A C T G A A C T G C G A T A C G T
C T G A C T G A C A T G G C T A C A T G G C T A C G T A G C T A C A T G C G T A C T G A

SOX10/MA0442.2/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AAGAAAGT-
AAAACAAAGAA
A C G T A C G T C G T A C G T A A C T G C G T A C G T A C T G A A C T G C G A T A C G T
C T G A C T G A T G C A G C T A A G T C C G T A G C T A G C T A A C T G T C G A T G C A

SOX4/MA0867.2/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AAGAAAGT-
GAACAAAGGG
A C G T C G T A C G T A A C T G C G T A C G T A C T G A A C T G C G A T A C G T
C T A G T C G A C G T A A T G C T C G A T C G A G C T A C T A G T C A G T C A G

Dmrt1/MA1603.1/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AAGAAAGT---
GATACAAAGTATC
A C G T A C G T C G T A C G T A A C T G C G T A C G T A C T G A A C T G C G A T A C G T A C G T A C G T
C T A G G C T A G C A T C G T A G A T C G C T A G C T A C G T A C T A G C G A T C G T A C G A T G T A C

PB0061.1_Sox11_1/Jaspar

Match Rank:5
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----AAGAAAGT----
ATAAGAACAAAGGACTA
A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G C G T A C G T A C T G A A C T G C G A T A C G T A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0071.1_Sox4_1/Jaspar

Match Rank:6
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----AAGAAAGT----
AGAAGAACAAAGGACTA
A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G C G T A C G T A C T G A A C T G C G A T A C G T A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AAGAAAGT
GGAACAAAGR
A C G T A C G T C G T A C G T A A C T G C G T A C G T A C T G A A C T G C G A T
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:8
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----AAGAAAGT
AGAAACGAAAGT
A C G T A C G T A C G T A C G T C G T A C G T A A C T G C G T A C G T A C T G A A C T G C G A T
T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AAGAAAGT
VRRACAAWGG
A C G T A C G T C G T A C G T A A C T G C G T A C G T A C T G A A C T G C G A T
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

MF0011.1_HMG_class/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AAGAAAGT
AACAAT--
C G T A C G T A A C T G C G T A C G T A C T G A A C T G C G A T
T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T