Information for 2-CCHATDAGGTGC (Motif 3)

A G T C A G T C G A T C C G T A A C G T C A T G T G C A C T A G C T A G C G A T C T A G G T A C
Reverse Opposite:
A C T G A G T C C G T A A G T C G A T C A C G T G A T C C G T A A C G T C A T G A C T G A C T G
p-value:1e-6
log p-value:-1.530e+01
Information Content per bp:1.752
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif30.00%
Number of Background Sequences with motif102.3
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets85.3 +/- 38.1bp
Average Position of motif in Background105.7 +/- 70.6bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CCHATDAGGTGC
AGCCAATCGG----
A C G T A C G T A G T C A G T C G A T C C G T A A C G T C A T G T G C A C T A G C T A G C G A T C T A G G T A C
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T A C G T A C G T

NFYC/MA1644.1/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCHATDAGGTGC
AGCCAATCAGA---
A C G T A C G T A G T C A G T C G A T C C G T A A C G T C A T G T G C A C T A G C T A G C G A T C T A G G T A C
T C G A C T A G A G T C G T A C G C T A T C G A G A C T T A G C T C G A T A C G T G C A A C G T A C G T A C G T

NFYA/MA0060.3/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCHATDAGGTGC
AACCAATCAGA---
A C G T A C G T A G T C A G T C G A T C C G T A A C G T C A T G T G C A C T A G C T A G C G A T C T A G G T A C
T C G A C T G A A G T C G A T C G C T A T C G A G A C T T A G C T C G A T A C G T G C A A C G T A C G T A C G T

NFYB/MA0502.2/Jaspar

Match Rank:4
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CCHATDAGGTGC
NTGGCCAATGAG----
A C G T A C G T A C G T A C G T A G T C A G T C G A T C C G T A A C G T C A T G T G C A C T A G C T A G C G A T C T A G G T A C
A G T C A C G T C T A G T C A G G A T C G T A C G T C A T C G A C G A T T A C G T C G A T A C G A C G T A C G T A C G T A C G T

ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer

Match Rank:5
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCHATDAGGTGC
RGMCCTACTRTGTGC
A C G T A C G T A C G T A G T C A G T C G A T C C G T A A C G T C A T G T G C A C T A G C T A G C G A T C T A G G T A C
C T A G T C A G T G C A A G T C A G T C A G C T C G T A G T A C A G C T T C G A A G C T A T C G A G C T C T A G G A T C

MSX2/MA0708.1/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCHATDAGGTGC
CCAATTAA----
A G T C A G T C G A T C C G T A A C G T C A T G T G C A C T A G C T A G C G A T C T A G G T A C
T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A A C G T A C G T A C G T A C G T

EN2/MA0642.1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCHATDAGGTGC
CCCAATTAGC---
A C G T A G T C A G T C G A T C C G T A A C G T C A T G T G C A C T A G C T A G C G A T C T A G G T A C
T A G C A T G C A G T C T G C A T G C A A C G T A G C T C T G A T A C G A T G C A C G T A C G T A C G T

MSX1/MA0666.1/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCHATDAGGTGC
CCAATTAG----
A G T C A G T C G A T C C G T A A C G T C A T G T G C A C T A G C T A G C G A T C T A G G T A C
A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G A C G T A C G T A C G T A C G T

Isl1/MA1608.1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCHATDAGGTGC
ATCCATTAGCA--
A C G T A G T C A G T C G A T C C G T A A C G T C A T G T G C A C T A G C T A G C G A T C T A G G T A C
C T G A A C G T G A T C G T A C C T G A G C A T G A C T G C T A C T A G A G T C T G C A A C G T A C G T

VENTX/MA0724.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCHATDAGGTGC
ACCGATTAG----
A C G T A G T C A G T C G A T C C G T A A C G T C A T G T G C A C T A G C T A G C G A T C T A G G T A C
C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G A C G T A C G T A C G T A C G T