| p-value: | 1e-4 |
| log p-value: | -9.592e+00 |
| Information Content per bp: | 1.530 |
| Number of Target Sequences with motif | 1.0 |
| Percentage of Target Sequences with motif | 14.29% |
| Number of Background Sequences with motif | 0.0 |
| Percentage of Background Sequences with motif | 0.00% |
| Average Position of motif in Targets | 99.0 +/- 0.0bp |
| Average Position of motif in Background | 0.0 +/- 0.0bp |
| Strand Bias (log2 ratio + to - strand density) | 10.0 |
| Multiplicity (# of sites on avg that occur together) | 1.00 |
| Motif File: | file (matrix) reverse opposite |
| SVG Files for Logos: | forward logo reverse opposite |
RORC/MA1151.1/Jaspar
| Match Rank: | 1 |
| Score: | 0.69 |
| Offset: | 0 |
| Orientation: | forward strand |
| Alignment: | CTAAATAGGTCT ATAAGTAGGTCA |
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RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer
| Match Rank: | 2 |
| Score: | 0.68 |
| Offset: | 1 |
| Orientation: | forward strand |
| Alignment: | CTAAATAGGTCT- -WAABTAGGTCAV |
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RORA(var.2)/MA0072.1/Jaspar
| Match Rank: | 3 |
| Score: | 0.67 |
| Offset: | -1 |
| Orientation: | forward strand |
| Alignment: | -CTAAATAGGTCT- TATAAGTAGGTCAA |
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PH0094.1_Lhx4/Jaspar
| Match Rank: | 4 |
| Score: | 0.66 |
| Offset: | -4 |
| Orientation: | forward strand |
| Alignment: | ----CTAAATAGGTCT- TAAACTAATTAGCTTTG |
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RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer
| Match Rank: | 5 |
| Score: | 0.66 |
| Offset: | 2 |
| Orientation: | forward strand |
| Alignment: | CTAAATAGGTCT --AAYTAGGTCA |
|
|
|
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer
| Match Rank: | 6 |
| Score: | 0.66 |
| Offset: | 2 |
| Orientation: | forward strand |
| Alignment: | CTAAATAGGTCT --AAYTAGGTCA |
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|
|
PH0058.1_Hoxb3/Jaspar
| Match Rank: | 7 |
| Score: | 0.66 |
| Offset: | -5 |
| Orientation: | reverse strand |
| Alignment: | -----CTAAATAGGTCT TNNNACTAATTAGNTCA |
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|
PH0155.1_Prrx2/Jaspar
| Match Rank: | 8 |
| Score: | 0.65 |
| Offset: | -5 |
| Orientation: | reverse strand |
| Alignment: | -----CTAAATAGGTCT NTTCGCTAATTAGCTNT |
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|
PH0031.1_Evx1/Jaspar
| Match Rank: | 9 |
| Score: | 0.64 |
| Offset: | -5 |
| Orientation: | reverse strand |
| Alignment: | -----CTAAATAGGTCT NNNCACTAATTAGTNNT |
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|
PH0027.1_Emx2/Jaspar
| Match Rank: | 10 |
| Score: | 0.64 |
| Offset: | -5 |
| Orientation: | reverse strand |
| Alignment: | -----CTAAATAGGTCT NNCCACTAATTAGNNNT |
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