Information for 5-TWACCCATCA (Motif 11)

G A C T C G A T C T G A A T G C A G T C A G T C C G T A A G C T G A T C C G T A
Reverse Opposite:
A C G T C T A G C T G A C G A T A C T G A C T G A T C G A G C T C G T A C T G A
p-value:1e-8
log p-value:-1.981e+01
Information Content per bp:1.785
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif3.31%
Number of Background Sequences with motif152.4
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets108.6 +/- 58.6bp
Average Position of motif in Background110.1 +/- 59.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0134.1_Pbx1/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TWACCCATCA-------
TCACCCATCAATAAACA
G A C T C G A T C T G A A T G C A G T C A G T C C G T A A G C T G A T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.68
Offset:2
Orientation:forward strand
Alignment:TWACCCATCA--
--GGCCATTAAC
G A C T C G A T C T G A A T G C A G T C A G T C C G T A A G C T G A T C C G T A A C G T A C G T
A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TWACCCATCA
TTCCCCCTAC
G A C T C G A T C T G A A T G C A G T C A G T C C G T A A G C T G A T C C G T A
A G C T G A C T G T A C G T A C A T G C G T A C G T A C A C G T G T A C T A G C

NFYC/MA1644.1/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TWACCCATCA--
-AGCCAATCAGA
G A C T C G A T C T G A A T G C A G T C A G T C C G T A A G C T G A T C C G T A A C G T A C G T
A C G T T C G A C T A G A G T C G T A C G C T A T C G A G A C T T A G C T C G A T A C G T G C A

NFYA/MA0060.3/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TWACCCATCA--
-AACCAATCAGA
G A C T C G A T C T G A A T G C A G T C A G T C C G T A A G C T G A T C C G T A A C G T A C G T
A C G T T C G A C T G A A G T C G A T C G C T A T C G A G A C T T A G C T C G A T A C G T G C A

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:6
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TWACCCATCA
YCATCMATCA
G A C T C G A T C T G A A T G C A G T C A G T C C G T A A G C T G A T C C G T A
G A T C G T A C C T G A A C G T G A T C G T C A C T G A A C G T G A T C G C T A

ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TWACCCATCA----
TTAACCCTTTVNKKN
A C G T G A C T C G A T C T G A A T G C A G T C A G T C C G T A A G C T G A T C C G T A A C G T A C G T A C G T A C G T
C A G T G A C T C G T A G C T A G T A C G A T C G T A C G A C T A G C T A C G T T G A C C G T A C A G T A C G T A T G C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:8
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TWACCCATCA-
GYCATCMATCAT
A C G T G A C T C G A T C T G A A T G C A G T C A G T C C G T A A G C T G A T C C G T A A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

Isl1/MA1608.1/Jaspar

Match Rank:9
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TWACCCATCA---
--ATCCATTAGCA
G A C T C G A T C T G A A T G C A G T C A G T C C G T A A G C T G A T C C G T A A C G T A C G T A C G T
A C G T A C G T C T G A A C G T G A T C G T A C C T G A G C A T G A C T G C T A C T A G A G T C T G C A

ZNF652/MA1657.1/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TWACCCATCA
NTTAACTCTTTN
A C G T A C G T G A C T C G A T C T G A A T G C A G T C A G T C C G T A A G C T G A T C C G T A
C G A T A C G T C G A T T C G A G C T A G A T C G A C T T A G C G A C T A C G T A G C T T G A C