Information for 4-TYKAGGWWTAKW (Motif 4)

A C G T A G C T C A G T C G T A A C T G A C T G C G A T C G A T A C G T C G T A A C T G C G T A
Reverse Opposite:
C G A T G T A C C G A T C G T A C G T A C G T A A G T C A G T C C G A T G T C A C T G A C G T A
p-value:1e-6
log p-value:-1.482e+01
Information Content per bp:1.807
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif141.9
Percentage of Background Sequences with motif0.30%
Average Position of motif in Targets88.5 +/- 63.2bp
Average Position of motif in Background102.2 +/- 66.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OTX2/MA0712.2/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TYKAGGWWTAKW-
-AAGGGATTAGAA
A C G T A G C T C A G T C G T A A C T G A C T G C G A T C G A T A C G T C G T A A C T G C G T A A C G T
A C G T G C T A C G T A C T A G C T A G C T A G G T C A C A G T G C A T C G T A C T A G C G T A C G T A

PITX1/MA0682.2/Jaspar

Match Rank:2
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:TYKAGGWWTAKW
---NGGATTAN-
A C G T A G C T C A G T C G T A A C T G A C T G C G A T C G A T A C G T C G T A A C T G C G T A
A C G T A C G T A C G T C A T G T C A G C A T G G T C A A C G T A C G T C G T A C T A G A C G T

RUNX3/MA0684.2/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TYKAGGWWTAKW
NNTTGAGGTTNN--
A C G T A C G T A C G T A G C T C A G T C G T A A C T G A C T G C G A T C G A T A C G T C G T A A C T G C G T A
C T G A C G A T G A C T C G A T A C T G G C T A A C T G C T A G G A C T A G C T C G A T G C A T A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:4
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:TYKAGGWWTAKW
--VRGGATTARN
A C G T A G C T C A G T C G T A A C T G A C T G C G A T C G A T A C G T C G T A A C T G C G T A
A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

PB0006.1_Bcl6b_1/Jaspar

Match Rank:5
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TYKAGGWWTAKW
TCTTTCGAGGAATTTG
A C G T A C G T A C G T A C G T A C G T A G C T C A G T C G T A A C T G A C T G C G A T C G A T A C G T C G T A A C T G C G T A
C G A T G A T C G A C T C G A T C G A T A G T C A C T G C G T A T C A G C A T G C G T A G C T A G A C T G C A T G A C T T A C G

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:TYKAGGWWTAKW
----GGATTAGC
A C G T A G C T C A G T C G T A A C T G A C T G C G A T C G A T A C G T C G T A A C T G C G T A
A C G T A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:7
Score:0.63
Offset:3
Orientation:forward strand
Alignment:TYKAGGWWTAKW
---RGGATTAR-
A C G T A G C T C A G T C G T A A C T G A C T G C G A T C G A T A C G T C G T A A C T G C G T A
A C G T A C G T A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TYKAGGWWTAKW
--NGGGATTA--
A C G T A G C T C A G T C G T A A C T G A C T G C G A T C G A T A C G T C G T A A C T G C G T A
A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T

PITX2/MA1547.1/Jaspar

Match Rank:9
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:TYKAGGWWTAKW
---GGGATTAN-
A C G T A G C T C A G T C G T A A C T G A C T G C G A T C G A T A C G T C G T A A C T G C G T A
A C G T A C G T A C G T A C T G T C A G C T A G G T C A A C G T A G C T C G T A C A G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:10
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TYKAGGWWTAKW
--GNGGATTAGN
A C G T A G C T C A G T C G T A A C T G A C T G C G A T C G A T A C G T C G T A A C T G C G T A
A C G T A C G T C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G