Information for 6-CTAATGAAATAG (Motif 6)

A G T C A C G T C G T A G T C A A C G T A C T G C G T A C G T A C G T A A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A A C G T A C G T A C G T A G T C C G T A A C G T A C G T C G T A A C T G
p-value:1e-13
log p-value:-3.056e+01
Information Content per bp:1.972
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets102.0 +/- 42.9bp
Average Position of motif in Background117.5 +/- 15.7bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CTAATGAAATAG
GGYAATGAAA---
A C G T A G T C A C G T C G T A G T C A A C G T A C T G C G T A C G T A C G T A A C G T C G T A A C T G
C T A G T A C G G A C T T G C A T G C A C G A T T A C G C T G A T C G A C T G A A C G T A C G T A C G T

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:2
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CTAATGAAATAG
NCYAATAAAA---
A C G T A G T C A C G T C G T A G T C A A C G T A C T G C G T A C G T A C G T A A C G T C G T A A C T G
C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CTAATGAAATAG
GGCMATGAAA---
A C G T A G T C A C G T C G T A G T C A A C G T A C T G C G T A C G T A C G T A A C G T C G T A A C T G
C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A A C G T A C G T A C G T

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CTAATGAAATAG
HDGYAATGAAAN--
A C G T A C G T A G T C A C G T C G T A G T C A A C G T A C T G C G T A C G T A C G T A A C G T C G T A A C T G
G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A A C G T A C G T

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTAATGAAATAG
CYHATAAAAN--
A G T C A C G T C G T A G T C A A C G T A C T G C G T A C G T A C G T A A C G T C G T A A C T G
T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C A C G T A C G T

HOXB4/MA1499.1/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CTAATGAAATAG
NTAATGAT----
A G T C A C G T C G T A G T C A A C G T A C T G C G T A C G T A C G T A A C G T C G T A A C T G
A G T C A G C T G T C A C G T A A G C T A C T G C T G A A G C T A C G T A C G T A C G T A C G T

PH0147.1_Pou3f2/Jaspar

Match Rank:7
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CTAATGAAATAG-
NNNACTAATTAATTANC
A C G T A C G T A C G T A C G T A G T C A C G T C G T A G T C A A C G T A C T G C G T A C G T A C G T A A C G T C G T A A C T G A C G T
G A T C C T G A G T C A T G C A G A T C C A G T G T C A C G T A C G A T C A G T C T G A C T G A C A G T G C A T G C T A G C A T A T G C

HOXC4/MA1504.1/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CTAATGAAATAG
NTAATGAN----
A G T C A C G T C G T A G T C A A C G T A C T G C G T A C G T A C G T A A C G T C G T A A C T G
A G C T A G C T C G T A C G T A A G C T A C T G C T G A A G T C A C G T A C G T A C G T A C G T

PH0038.1_Hlx/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTAATGAAATAG--
TGTAATTAATTATGG
A C G T A G T C A C G T C G T A G T C A A C G T A C T G C G T A C G T A C G T A A C G T C G T A A C T G A C G T A C G T
C A G T C T A G G A C T G C T A C G T A G A C T G A C T C G T A C T G A G C A T C G A T C T G A C A G T C A T G C A T G

ARGFX/MA1463.1/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTAATGAAATAG
TCTAATTAAA---
A C G T A G T C A C G T C G T A G T C A A C G T A C T G C G T A C G T A C G T A A C G T C G T A A C T G
C A G T G A T C G A C T G T C A C G T A A C G T A G C T C T G A C T G A G T C A A C G T A C G T A C G T