Information for 24-CTAAGTATTCAA (Motif 30)

A G T C A C G T C G T A C G T A A C T G A C G T C G T A A C G T A C G T A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G C G T A C G T A A C G T C G T A A G T C A C G T A C G T C G T A A C T G
p-value:1e-3
log p-value:-7.602e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif6.67%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets32.0 +/- 0.0bp
Average Position of motif in Background106.0 +/- 17.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0117.1_Nkx3-1/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CTAAGTATTCAA---
TACTAAGTACTTAAATG
A C G T A C G T A G T C A C G T C G T A C G T A A C T G A C G T C G T A A C G T A C G T A G T C C G T A C G T A A C G T A C G T A C G T
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

PH0112.1_Nkx2-3/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CTAAGTATTCAA--
CNTTAAGTACTTAANG
A C G T A C G T A G T C A C G T C G T A C G T A A C T G A C G T C G T A A C G T A C G T A G T C C G T A C G T A A C G T A C G T
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G

PH0116.1_Nkx2-9/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CTAAGTATTCAA---
TTTTAAGTACTTAAATT
A C G T A C G T A G T C A C G T C G T A C G T A A C T G A C G T C G T A A C G T A C G T A G T C C G T A C G T A A C G T A C G T A C G T
C G A T G A C T G C A T C G A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C G T A G C T A C G A T G A C T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CTAAGTATTCAA
--GAATATTCAT
A G T C A C G T C G T A C G T A A C T G A C G T C G T A A C G T A C G T A G T C C G T A C G T A
A C G T A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T

PH0039.1_Mnx1/Jaspar

Match Rank:5
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CTAAGTATTCAA
NNNCACTAATTANTNN-
A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C T G A C G T C G T A A C G T A C G T A G T C C G T A C G T A
A T G C C T A G A T G C G A T C T G C A A T G C G A C T G T C A C G T A G A C T A C G T C T G A T A C G A C G T T G C A T G A C A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTAAGTATTCAA
TTAAGTGCTT--
A G T C A C G T C G T A C G T A A C T G A C G T C G T A A C G T A C G T A G T C C G T A C G T A
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T

PH0132.1_Pax6/Jaspar

Match Rank:7
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CTAAGTATTCAA
GNNAATTAATTAATCA-
A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C T G A C G T C G T A A C G T A C G T A G T C C G T A C G T A
C A T G G C A T A T G C T G C A T G C A G A C T G C A T T C G A G C T A C G A T A C G T C G T A C T G A A C G T G A T C T C G A A C G T

POU4F2/MA0683.1/Jaspar

Match Rank:8
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CTAAGTATTCAA
CTCATTAATTATGCAT
A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C T G A C G T C G T A A C G T A C G T A G T C C G T A C G T A
A G T C G A C T T G A C T G C A A G C T G A C T C G T A C G T A C G A T G C A T C G T A C G A T C A T G G A T C C T G A G A C T

LIN54/MA0619.1/Jaspar

Match Rank:9
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:CTAAGTATTCAA--
-----NATTCAAAT
A G T C A C G T C G T A C G T A A C T G A C G T C G T A A C G T A C G T A G T C C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

POU4F1/MA0790.1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CTAAGTATTCAA
CATTAATTATTCAT
A C G T A C G T A G T C A C G T C G T A C G T A A C T G A C G T C G T A A C G T A C G T A G T C C G T A C G T A
G T A C C T G A A G C T G C A T G C T A G C T A G C A T G C A T C G T A C G A T C A G T G A T C C T G A A G C T