Information for 6-TCATTATAAG (Motif 18)

A C G T A G T C C G T A A C G T A C G T C G T A A G C T C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T C T G A A C G T C G T A G T C A A C G T A C T G C G T A
p-value:1e-9
log p-value:-2.198e+01
Information Content per bp:1.958
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.35%
Number of Background Sequences with motif50.0
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets101.1 +/- 57.5bp
Average Position of motif in Background106.1 +/- 50.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU6F1(var.2)/MA1549.1/Jaspar

Match Rank:1
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---TCATTATAAG
NNCTCATTAT---
A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T C G T A A G C T C G T A C G T A A C T G
G C T A A T G C T G A C C G A T T G A C G T C A A C G T A G C T C T G A G A C T A C G T A C G T A C G T

NKX6-3/MA1530.1/Jaspar

Match Rank:2
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-TCATTATAAG
CTCATTAAA--
A C G T A C G T A G T C C G T A A C G T A C G T C G T A A G C T C G T A C G T A A C T G
T A G C A G C T A G T C C G T A A C G T A G C T C T G A G C T A G C T A A C G T A C G T

PB0079.1_Sry_1/Jaspar

Match Rank:3
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--TCATTATAAG----
NANTATTATAATTNNN
A C G T A C G T A C G T A G T C C G T A A C G T A C G T C G T A A G C T C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C T G G C T A G C T A G A C T C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T G T C A C G A T T G C A

HOXC4/MA1504.1/Jaspar

Match Rank:4
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TCATTATAAG
GTCATTAA---
A C G T A C G T A G T C C G T A A C G T A C G T C G T A A G C T C G T A C G T A A C T G
T C A G G A C T G T A C C T G A A C G T A C G T C T G A T C G A A C G T A C G T A C G T

PB0174.1_Sox30_2/Jaspar

Match Rank:5
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--TCATTATAAG----
TAAGATTATAATACGG
A C G T A C G T A C G T A G T C C G T A A C G T A C G T C G T A A G C T C G T A C G T A A C T G A C G T A C G T A C G T A C G T
G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G

POU6F2/MA0793.1/Jaspar

Match Rank:6
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---TCATTATAAG
AGCTCATTAT---
A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T C G T A A G C T C G T A C G T A A C T G
C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T A C G T A C G T A C G T

HOXD4/MA1507.1/Jaspar

Match Rank:7
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TCATTATAAG
ATCATTAG---
A C G T A C G T A G T C C G T A A C G T A C G T C G T A A G C T C G T A C G T A A C T G
T C G A A G C T G T A C C T G A A C G T A C G T C T G A C T A G A C G T A C G T A C G T

PH0152.1_Pou6f1_2/Jaspar

Match Rank:8
Score:0.70
Offset:-6
Orientation:reverse strand
Alignment:------TCATTATAAG-
GCAACCTCATTATNNNN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T C G T A A G C T C G T A C G T A A C T G A C G T
C A T G G T A C G T C A C G T A A T G C G T A C A C G T G T A C C G T A A C G T C G A T C G T A C G A T A T C G C G A T C A G T A G C T

HOXB4/MA1499.1/Jaspar

Match Rank:9
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TCATTATAAG
ATCATTAG---
A C G T A C G T A G T C C G T A A C G T A C G T C G T A A G C T C G T A C G T A A C T G
T C G A A G C T G T A C C T G A A C G T A C G T C T G A T C A G A C G T A C G T A C G T

HOXA4/MA1496.1/Jaspar

Match Rank:10
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TCATTATAAG
GTCATTAG---
A C G T A C G T A G T C C G T A A C G T A C G T C G T A A G C T C G T A C G T A A C T G
T C A G A G C T T G A C C T G A A C G T A G C T T C G A T C A G A C G T A C G T A C G T