Information for 4-GAGAAAGACA (Motif 12)

A C T G T C G A A C T G G C T A T C G A G C T A A T C G G C T A G T A C G T C A
Reverse Opposite:
C A G T C A T G C G A T T A G C C G A T A G C T C G A T T G A C A G C T T G A C
p-value:1e-9
log p-value:-2.202e+01
Information Content per bp:1.662
Number of Target Sequences with motif272.0
Percentage of Target Sequences with motif10.23%
Number of Background Sequences with motif3266.5
Percentage of Background Sequences with motif6.96%
Average Position of motif in Targets97.9 +/- 57.2bp
Average Position of motif in Background99.7 +/- 56.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM1/MA0508.3/Jaspar

Match Rank:1
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--GAGAAAGACA
NAGAGAAAGNA-
A C G T A C G T A C T G T C G A A C T G G C T A T C G A G C T A A T C G G C T A G T A C G T C A
C T G A C T G A C A T G G C T A C A T G G C T A C G T A G C T A C A T G C G T A C T G A A C G T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----GAGAAAGACA
GAAAGTGAAAGT--
A C G T A C G T A C G T A C G T A C T G T C G A A C T G G C T A T C G A G C T A A T C G G C T A G T A C G T C A
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GAGAAAGACA
AGGTGHCAGACA
A C G T A C G T A C T G T C G A A C T G G C T A T C G A G C T A A T C G G C T A G T A C G T C A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GAGAAAGACA-
AGGTGNCAGACAG
A C G T A C G T A C T G T C G A A C T G G C T A T C G A G C T A A T C G G C T A G T A C G T C A A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

PB0166.1_Sox12_2/Jaspar

Match Rank:5
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GAGAAAGACA-
AAACAGACAAAGGAAT
A C G T A C G T A C G T A C G T A C G T A C T G T C G A A C T G G C T A T C G A G C T A A T C G G C T A G T A C G T C A A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

PRDM4/MA1647.1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GAGAAAGACA-
NAGAAACAGNN
A C T G T C G A A C T G G C T A T C G A G C T A A T C G G C T A G T A C G T C A A C G T
C G A T C G T A C A T G C G T A T C G A C G T A A G T C G C T A A T C G G T C A G A T C

Stat2/MA1623.1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GAGAAAGACA----
-AGAAACAGAAACT
A C T G T C G A A C T G G C T A T C G A G C T A A T C G G C T A G T A C G T C A A C G T A C G T A C G T A C G T
A C G T C T G A C T A G C T G A G C T A T C G A T A G C G C T A C T A G T C G A C T G A T C G A T A G C G C A T

SOX10/MA0442.2/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GAGAAAGACA
AAAACAAAGAA-
A C G T A C G T A C T G T C G A A C T G G C T A T C G A G C T A A T C G G C T A G T A C G T C A
C T G A C T G A T G C A G C T A A G T C C G T A G C T A G C T A A C T G T C G A T G C A A C G T

PB0138.1_Irf4_2/Jaspar

Match Rank:9
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------GAGAAAGACA
GNNACCGAGAATNNN-
A C G T A C G T A C G T A C G T A C G T A C G T A C T G T C G A A C T G G C T A T C G A G C T A A T C G G C T A G T A C G T C A
A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GAGAAAGACA
CSTGGGAAAD---
A C G T A C G T A C G T A C T G T C G A A C T G G C T A T C G A G C T A A T C G G C T A G T A C G T C A
A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A A C G T A C G T A C G T