Information for 6-CCTTAGTGCG (Motif 18)

A G T C A G T C A C G T A C G T C G T A A C T G A C G T A C T G A G T C A C T G
Reverse Opposite:
A G T C A C T G A G T C C G T A A G T C A C G T C G T A C G T A A C T G A C T G
p-value:1e-3
log p-value:-8.428e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets34.0 +/- 0.0bp
Average Position of motif in Background54.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ISL2/MA0914.1/Jaspar

Match Rank:1
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CCTTAGTGCG
-TTAAGTGC-
A G T C A G T C A C G T A C G T C G T A A C T G A C G T A C T G A G T C A C T G
A C G T G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C A C G T

Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCTTAGTGCG-
BCCWTTGTBYKV
A C G T A G T C A G T C A C G T A C G T C G T A A C T G A C G T A C T G A G T C A C T G A C G T
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A T G C G A C T A C T G T A C G

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CCTTAGTGCG
YCTTTGTTCC
A G T C A G T C A C G T A C G T C G T A A C T G A C G T A C T G A G T C A C T G
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CCTTAGTGCG
CCWTTGTYYB
A G T C A G T C A C G T A C G T C G T A A C T G A C G T A C T G A G T C A C T G
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox3/MA0514.1/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCTTAGTGCG
CCTTTGTTTT
A G T C A G T C A C G T A C G T C G T A A C T G A C G T A C T G A G T C A C T G
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CCTTAGTGCG-
-TTAAGTGCTT
A G T C A G T C A C G T A C G T C G T A A C T G A C G T A C T G A G T C A C T G A C G T
A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

SOX4/MA0867.2/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CCTTAGTGCG
NCCTTTGTTC-
A C G T A G T C A G T C A C G T A C G T C G T A A C T G A C G T A C T G A G T C A C T G
A G T C A G T C G A T C C G A T A G C T A G C T T A C G C G A T A G C T G A T C A C G T

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCTTAGTGCG-
NTGCCCTAGGGCAA
A C G T A C G T A C G T A G T C A G T C A C G T A C G T C G T A A C T G A C G T A C T G A G T C A C T G A C G T
C G T A G A C T T A C G A T G C A G T C A G T C A G C T T C G A T C A G C T A G A T C G A T G C C T G A G C T A

SOX10/MA0442.2/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CCTTAGTGCG
NNCTTTGTTNN
A C G T A G T C A G T C A C G T A C G T C G T A A C T G A C G T A C T G A G T C A C T G
A C G T A G C T T G A C C G A T C G A T C G A T T C A G C G A T A C G T G A C T G A C T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CCTTAGTGCG-
GCCTCAGGGCAT
A C G T A G T C A G T C A C G T A C G T C G T A A C T G A C G T A C T G A G T C A C T G A C G T
A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T