Information for 11-CGGCACCATCTC (Motif 18)

A G T C A C T G A C T G A G T C C G T A A G T C A G T C C G T A A C G T A G T C A C G T A G T C
Reverse Opposite:
A C T G C G T A A C T G C G T A A C G T A C T G A C T G A C G T A C T G A G T C A G T C A C T G
p-value:1e-3
log p-value:-9.056e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets151.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:1
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CGGCACCATCTC
ADGGYAGYAGCATCT-
A C G T A C G T A C G T A C G T A G T C A C T G A C T G A G T C C G T A A G T C A G T C C G T A A C G T A G T C A C G T A G T C
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T A C G T

NEUROG2(var.2)/MA1642.1/Jaspar

Match Rank:2
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CGGCACCATCTC----
---NNCCATCTGTNNN
A G T C A C T G A C T G A G T C C G T A A G T C A G T C C G T A A C G T A G T C A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C A G T G A C G T A C C T G A A C G T T G A C A G C T A T C G A C G T A G C T G A T C G A T C

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CGGCACCATCTC-----
CCNNACCATCTGGCCTN
A G T C A C T G A C T G A G T C C G T A A G T C A G T C C G T A A C G T A G T C A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A G T C T A G C T A C G C T A G T C G A G T A C A G T C C G T A A G C T T G A C A G C T C A T G A T C G G T A C G A T C A G C T C A G T

NEUROD1/MA1109.1/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CGGCACCATCTC---
--NNNCCATCTGTNN
A G T C A C T G A C T G A G T C C G T A A G T C A G T C C G T A A C G T A G T C A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A T G C A G C T T C A G T G A C G T A C C G T A A C G T T G A C G C A T A C T G A G C T A G T C G T A C

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:5
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CGGCACCATCTC--
----ACCATCTGTT
A G T C A C T G A C T G A G T C C G T A A G T C A G T C C G T A A C G T A G T C A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T

YY2/MA0748.2/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CGGCACCATCTC
CGCCGCCATNN-
A G T C A C T G A C T G A G T C C G T A A G T C A G T C C G T A A C G T A G T C A C G T A G T C
A T G C C A T G A T G C T A G C C T A G A G T C A T G C T C G A A G C T A T G C C A G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CGGCACCATCTC--
----GCCATCTGTT
A G T C A C T G A C T G A G T C C G T A A G T C A G T C C G T A A C G T A G T C A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CGGCACCATCTC-
-GGCTCYAKCAYC
A G T C A C T G A C T G A G T C C G T A A G T C A G T C C G T A A C G T A G T C A C G T A G T C A C G T
A C G T C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C

YY1(Zf)/Promoter/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CGGCACCATCTC-
-GCCGCCATCTTG
A G T C A C T G A C T G A G T C C G T A A G T C A G T C C G T A A C G T A G T C A C G T A G T C A C G T
A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

TAL1::TCF3/MA0091.1/Jaspar

Match Rank:10
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CGGCACCATCTC--
--CGACCATCTGTT
A G T C A C T G A C T G A G T C C G T A A G T C A G T C C G T A A C G T A G T C A C G T A G T C A C G T A C G T
A C G T A C G T G T A C T A C G C T G A G T A C A T G C C G T A A C G T G T A C A C G T A C T G A C G T G A C T