Information for 1-TGCGAAGAGT (Motif 2)

A C G T A T C G A G T C A C T G C G T A C G T A A C T G C G T A C T A G A C G T
Reverse Opposite:
C G T A A G T C A C G T A G T C A C G T C G A T A G T C A C T G A T G C C G T A
p-value:1e-13
log p-value:-3.165e+01
Information Content per bp:1.932
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets79.2 +/- 38.9bp
Average Position of motif in Background109.6 +/- 67.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.2/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TGCGAAGAGT
NNTGCCAAGNN-
A C G T A C G T A C G T A T C G A G T C A C T G C G T A C G T A A C T G C G T A C T A G A C G T
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TGCGAAGAGT
--NGAAGC--
A C G T A T C G A G T C A C T G C G T A C G T A A C T G C G T A C T A G A C G T
A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TGCGAAGAGT
GGTGCCAAGT--
A C G T A C G T A C G T A T C G A G T C A C T G C G T A C G T A A C T G C G T A C T A G A C G T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

ZNF652/MA1657.1/Jaspar

Match Rank:4
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TGCGAAGAGT----
--GAAAGAGTTAAA
A C G T A T C G A G T C A C T G C G T A C G T A A C T G C G T A C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C T G T C G A T G C A C T G A A T C G C T G A C T A G C G A T A G C T G C T A T G C A G C T A

RBPJ/MA1116.1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TGCGAAGAGT
CCTGGGAAAG--
A C G T A C G T A C G T A T C G A G T C A C T G C G T A C G T A A C T G C G T A C T A G A C G T
A G T C T A G C A G C T T C A G A C T G A C T G C G T A G T C A T G C A T A C G A C G T A C G T

SOX14/MA1562.1/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TGCGAAGAGT-
-CCGAACAATG
A C G T A T C G A G T C A C T G C G T A C G T A A C T G C G T A C T A G A C G T A C G T
A C G T T G A C G A T C C A T G C G T A G C T A A G T C C G T A G T C A A C G T C A T G

PB0203.1_Zfp691_2/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TGCGAAGAGT------
NTNNNAGGAGTCTCNTN
A C G T A C G T A T C G A G T C A C T G C G T A C G T A A C T G C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TGCGAAGAGT
CSTGGGAAAD--
A C G T A C G T A C G T A T C G A G T C A C T G C G T A C G T A A C T G C G T A C T A G A C G T
A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TGCGAAGAGT
TTGCCAAG---
A C G T A C G T A T C G A G T C A C T G C G T A C G T A A C T G C G T A C T A G A C G T
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:10
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----TGCGAAGAGT
AAGGTGTKAA----
A C G T A C G T A C G T A C G T A C G T A T C G A G T C A C T G C G T A C G T A A C T G C G T A C T A G A C G T
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T A C G T A C G T A C G T