Information for 12-TGAATAATCC (Motif 33)

A C G T A C T G C G T A C G T A A C G T C G T A C G T A A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A A C G T A C G T C G T A A C G T A C G T A G T C C G T A
p-value:1e-3
log p-value:-7.814e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif6.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets80.0 +/- 0.0bp
Average Position of motif in Background160.2 +/- 37.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-TGAATAATCC
ATGAATATTC-
A C G T A C G T A C T G C G T A C G T A A C G T C G T A C G T A A C G T A G T C A G T C
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T

PITX2/MA1547.1/Jaspar

Match Rank:2
Score:0.77
Offset:3
Orientation:forward strand
Alignment:TGAATAATCC-
---ATAATCCC
A C G T A C T G C G T A C G T A A C G T C G T A C G T A A C G T A G T C A G T C A C G T
A C G T A C G T A C G T G T C A C G A T C T G A C G T A A C G T A G T C A G T C T G A C

PH0138.1_Pitx2/Jaspar

Match Rank:3
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--TGAATAATCC-----
GNNNATTAATCCCTNCN
A C G T A C G T A C G T A C T G C G T A C G T A A C G T C G T A C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T
C T A G G C T A G A C T C T A G C T G A G A C T C G A T C G T A C T G A A C G T G A T C A G T C A G T C A G C T G C A T G T A C G T C A

PITX1/MA0682.2/Jaspar

Match Rank:4
Score:0.76
Offset:3
Orientation:forward strand
Alignment:TGAATAATCC-
---CTAATCCC
A C G T A C T G C G T A C G T A A C G T C G T A C G T A A C G T A G T C A G T C A C G T
A C G T A C G T A C G T G A T C A C G T C G T A C G T A A C G T G T A C A G T C G T A C

Dmbx1/MA0883.1/Jaspar

Match Rank:5
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-TGAATAATCC------
NNNATTAATCCGNTTNA
A C G T A C G T A C T G C G T A C G T A A C G T C G T A C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A

PH0025.1_Dmbx1/Jaspar

Match Rank:6
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-TGAATAATCC------
NNNATTAATCCGNTTNA
A C G T A C G T A C T G C G T A C G T A A C G T C G T A C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A

PITX3/MA0714.1/Jaspar

Match Rank:7
Score:0.74
Offset:2
Orientation:forward strand
Alignment:TGAATAATCC-
--CTTAATCCC
A C G T A C T G C G T A C G T A A C G T C G T A C G T A A C G T A G T C A G T C A C G T
A C G T A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C

OTX1/MA0711.1/Jaspar

Match Rank:8
Score:0.74
Offset:3
Orientation:forward strand
Alignment:TGAATAATCC-
---TTAATCCG
A C G T A C T G C G T A C G T A A C G T C G T A C G T A A C G T A G T C A G T C A C G T
A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G

PH0130.1_Otx2/Jaspar

Match Rank:9
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--TGAATAATCC-----
GANNATTAATCCCTNNN
A C G T A C G T A C G T A C T G C G T A C G T A A C G T C G T A C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T
C A T G G T C A G A T C C T G A T C G A G A C T C G A T C G T A C G T A C A G T G A T C A G T C A G T C A G C T G C T A G A T C G T C A

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:10
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-TGAATAATCC
ATGMATATDC-
A C G T A C G T A C T G C G T A C G T A A C G T C G T A C G T A A C G T A G T C A G T C
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T