Information for 15-GCATCATACATC (Motif 20)

A C T G A G T C C G T A A C G T A G T C C G T A A C G T C G T A A G T C C G T A A C G T A G T C
Reverse Opposite:
A C T G C G T A A C G T A C T G A C G T C G T A A C G T A C T G C G T A A C G T A C T G A G T C
p-value:1e-3
log p-value:-9.113e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets89.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:1
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----GCATCATACATC
WYATGCATWATGCAT-
A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T A G T C C G T A A C G T C G T A A G T C C G T A A C G T A G T C
C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T A C G T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----GCATCATACATC
TCATGAATWATTCAT-
A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T A G T C C G T A A C G T C G T A A G T C C G T A A C G T A G T C
G A C T G A T C G C T A C G A T C T A G G T C A C G T A C G A T G C A T C G T A G C A T C A G T A G T C G T C A C A G T A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCATCATACATC
TGAATTATGCAT-
A C G T A C T G A G T C C G T A A C G T A G T C C G T A A C G T C G T A A G T C C G T A A C G T A G T C
C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T A C G T

PBX2/MA1113.2/Jaspar

Match Rank:4
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GCATCATACATC---
--GTCATAAATCATT
A C T G A G T C C G T A A C G T A G T C C G T A A C G T C G T A A G T C C G T A A C G T A G T C A C G T A C G T A C G T
A C G T A C G T T C A G G A C T G T A C C T G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G A C T G C A T

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:5
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GCATCATACATC-
---YCATCMATCA
A C T G A G T C C G T A A C G T A G T C C G T A A C G T C G T A A G T C C G T A A C G T A G T C A C G T
A C G T A C G T A C G T G A T C G T A C C T G A A C G T G A T C G T C A C T G A A C G T G A T C G C T A

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GCATCATACATC----
-NNCCATAAATCATNN
A C T G A G T C C G T A A C G T A G T C C G T A A C G T C G T A A G T C C G T A A C G T A G T C A C G T A C G T A C G T A C G T
A C G T C T G A T C A G G A T C G T A C T C G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G C A T G C A T G A C T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:7
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GCATCATACATC--
--GYCATCMATCAT
A C T G A G T C C G T A A C G T A G T C C G T A A C G T C G T A A G T C C G T A A C G T A G T C A C G T A C G T
A C G T A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

ATF4/MA0833.2/Jaspar

Match Rank:8
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----GCATCATACATC
NNATTGCATCATNN---
A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T A G T C C G T A A C G T C G T A A G T C C G T A A C G T A G T C
C G A T C A G T T C G A G C A T C A G T C T A G G A T C T C G A G A C T G T A C C G T A A G C T G A C T G A C T A C G T A C G T A C G T

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:9
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GCATCATACATC
ATTGCATCAK-----
A C G T A C G T A C G T A C T G A G T C C G T A A C G T A G T C C G T A A C G T C G T A A G T C C G T A A C G T A G T C
T C G A A C G T A C G T C T A G A G T C T C G A G C A T G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

CEBPG(var.2)/MA1636.1/Jaspar

Match Rank:10
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------GCATCATACATC
NNGATTGCATCATNN---
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T A G T C C G T A A C G T C G T A A G T C C G T A A C G T A G T C
C T G A C G A T C A T G T C G A G C A T C A G T C A T G G A T C C T G A G A C T G T A C G C T A A G C T G C A T G C A T A C G T A C G T A C G T