Information for 13-GAGCAACGGA (Motif 34)

A C T G C G T A A C T G A G T C C G T A C G T A A G T C A C T G A C T G C G T A
Reverse Opposite:
A C G T A G T C A G T C A C T G A C G T A C G T A C T G A G T C A C G T A G T C
p-value:1e-3
log p-value:-7.454e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif6.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets99.0 +/- 0.0bp
Average Position of motif in Background93.7 +/- 81.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RFX7/MA1554.1/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GAGCAACGGA
NTAGCAACG--
A C G T A C T G C G T A A C T G A G T C C G T A C G T A A G T C A C T G A C T G C G T A
C T G A G A C T T C G A T A C G G A T C C T G A C T G A A T G C T A C G A C G T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:2
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----GAGCAACGGA
CCGCATAGCAACGGA
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A G T C C G T A C G T A A G T C A C T G A C T G C G T A
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----GAGCAACGGA
TACCATAGCAACGGT
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A G T C C G T A C G T A A G T C A C T G A C T G C G T A
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0054.1_Rfx3_1/Jaspar

Match Rank:4
Score:0.63
Offset:-9
Orientation:forward strand
Alignment:---------GAGCAACGGA----
TGTGACCCTTAGCAACCGATTAA
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A G T C C G T A C G T A A G T C A C T G A C T G C G T A A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

MYB/MA0100.3/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GAGCAACGGA-
-ACCAACTGTC
A C T G C G T A A C T G A G T C C G T A C G T A A G T C A C T G A C T G C G T A A C G T
A C G T G T C A A G T C A G T C C T G A G C T A A G T C A C G T T C A G G A C T G T A C

PB0061.1_Sox11_1/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GAGCAACGGA---
ATAAGAACAAAGGACTA
A C G T A C G T A C G T A C G T A C T G C G T A A C T G A G T C C G T A C G T A A G T C A C T G A C T G C G T A A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GAGCAACGGA
GAACAATGGN
A C T G C G T A A C T G A G T C C G T A C G T A A G T C A C T G A C T G C G T A
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

PB0040.1_Lef1_1/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----GAGCAACGGA---
NANAGATCAAAGGGNNN
A C G T A C G T A C G T A C G T A C T G C G T A A C T G A G T C C G T A C G T A A G T C A C T G A C T G C G T A A C G T A C G T A C G T
A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:9
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GAGCAACGGA--
--NHAACBGYYV
A C T G C G T A A C T G A G T C C G T A C G T A A G T C A C T G A C T G C G T A A C G T A C G T
A C G T A C G T A G T C G C A T C G T A C G T A G T A C A C G T A C T G G A T C G A T C T C G A

OVOL2/MA1545.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GAGCAACGGA--
NNNNTAACGGTNN
A C G T A C T G C G T A A C T G A G T C C G T A C G T A A G T C A C T G A C T G C G T A A C G T A C G T
T A G C C T G A G T A C T C G A A G C T G T C A C T G A A G T C A T C G A T C G C G A T G C T A G A T C