Information for 6-GGGCAATGAAGC (Motif 6)

A C T G A C T G A C T G A G T C C G T A C G T A A C G T A C T G C G T A C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T A C G T A G T C C G T A A C G T A C G T A C T G A G T C A G T C A G T C
p-value:1e-4
log p-value:-1.054e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets184.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:1
Score:0.75
Offset:1
Orientation:forward strand
Alignment:GGGCAATGAAGC
-GGYAATGAAA-
A C T G A C T G A C T G A G T C C G T A C G T A A C G T A C T G C G T A C G T A A C T G A G T C
A C G T C T A G T A C G G A C T T G C A T G C A C G A T T A C G C T G A T C G A C T G A A C G T

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:2
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GGGCAATGAAGC
-RGCAATNAAA-
A C T G A C T G A C T G A G T C C G T A C G T A A C G T A C T G C G T A C G T A A C T G A G T C
A C G T C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A A C G T

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GGGCAATGAAGC
-GGCMATGAAA-
A C T G A C T G A C T G A G T C C G T A C G T A A C G T A C T G C G T A C G T A A C T G A G T C
A C G T C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A A C G T

NFYB/MA0502.2/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GGGCAATGAAGC
NTGGCCAATGAG--
A C G T A C G T A C T G A C T G A C T G A G T C C G T A C G T A A C G T A C T G C G T A C G T A A C T G A G T C
A G T C A C G T C T A G T C A G G A T C G T A C G T C A T C G A C G A T T A C G T C G A T A C G A C G T A C G T

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GGGCAATGAAGC
HDGYAATGAAAN
A C T G A C T G A C T G A G T C C G T A C G T A A C G T A C T G C G T A C G T A A C T G A G T C
G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A

CDX2/MA0465.2/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GGGCAATGAAGC
AAGCAATAAAAA
A C T G A C T G A C T G A G T C C G T A C G T A A C G T A C T G C G T A C G T A A C T G A G T C
C T G A C G T A C T A G G A T C G T C A C T G A A G C T C G T A C G T A G C T A C G T A G C T A

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:7
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GGGCAATGAAGC-----
NGTGTTCAVTSAAGCGKAAA
A C G T A C G T A C G T A C T G A C T G A C T G A G T C C G T A C G T A A C G T A C T G C G T A C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A

CDX4/MA1473.1/Jaspar

Match Rank:8
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GGGCAATGAAGC
-GGCAATAAAAC
A C T G A C T G A C T G A G T C C G T A C G T A A C G T A C T G C G T A C G T A A C T G A G T C
A C G T C A T G T C A G A G T C T G C A C G T A A C G T C G T A C G T A G T C A G T C A A G T C

CDX1/MA0878.2/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GGGCAATGAAGC
-GGCCATAAAAC
A C T G A C T G A C T G A G T C C G T A C G T A A C G T A C T G C G T A C G T A A C T G A G T C
A C G T C A T G C T A G A G T C T G A C C G T A A C G T C T G A C G T A C T G A G T C A A G T C

HOXD13/MA0909.2/Jaspar

Match Rank:10
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GGGCAATGAAGC
-CCCAATAAAAC
A C T G A C T G A C T G A G T C C G T A C G T A A C G T A C T G C G T A C G T A A C T G A G T C
A C G T T A G C T A G C A G T C G T C A C T G A C G A T C G T A C T G A G T C A T G C A T G A C