Information for 21-GCTTCACT (Motif 40)

A T C G A T G C A C G T A C G T G T A C C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G A C G T A C T G C G T A C G T A A T C G A T G C
p-value:1e-2
log p-value:-5.577e+00
Information Content per bp:1.919
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif3.59%
Number of Background Sequences with motif1098.7
Percentage of Background Sequences with motif2.27%
Average Position of motif in Targets108.4 +/- 51.6bp
Average Position of motif in Background102.9 +/- 57.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GCTTCACT
GCTTCC--
A T C G A T G C A C G T A C G T G T A C C G T A A G T C A C G T
A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GCTTCACT----
GTTTCACTTCCG
A T C G A T G C A C G T A C G T G T A C C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A T C G G A C T A C G T A G C T A G T C G C T A A G T C G C A T A C G T A G T C G A T C A C T G

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCTTCACT---
ACTTTCACTTTC
A C G T A T C G A T G C A C G T A C G T G T A C C G T A A G T C A C G T A C G T A C G T A C G T
T C G A T G A C G C A T A G C T C A G T G A T C G C T A G A T C G A C T A C G T G C A T A G T C

PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCTTCACT---
ASTTTCACTTCC
A C G T A T C G A T G C A C G T A C G T G T A C C G T A A G T C A C G T A C G T A C G T A C G T
C T G A A T G C G C A T G A C T G A C T A G T C G C T A A T G C G C A T C G A T A G T C G A T C

Nr2e1/MA0676.1/Jaspar

Match Rank:5
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GCTTCACT---
--TTGACTTTT
A T C G A T G C A C G T A C G T G T A C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T

HMBOX1/MA0895.1/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GCTTCACT---
-GTTAACTAGN
A T C G A T G C A C G T A C G T G T A C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T

MSANTD3/MA1523.1/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCTTCACT---
-GTACACTCAC
A T C G A T G C A C G T A C G T G T A C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A T C G A C G T T G C A G A T C C G T A G A T C G C A T G A T C G T C A G T A C

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:8
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----GCTTCACT-------
TTTMCGCTTSABTGAACACN
A C G T A C G T A C G T A C G T A C G T A T C G A T G C A C G T A C G T G T A C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T C A G T G A C T T G A C G A T C T C A G A T G C G C A T A G C T T A C G C T G A A T C G G A C T C T A G T G C A T C G A A G T C G C T A A T G C T C G A

Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GCTTCACT---
-TTTCATTRCC
A T C G A T G C A C G T A C G T G T A C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T G A C T A G C T G A C T A T G C G C T A A C G T A C G T C T G A A T G C G A T C

PB0081.1_Tcf1_1/Jaspar

Match Rank:10
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GCTTCACT-----
ACTTAGTTAACTAAAAA
A C G T A C G T A C G T A C G T A T C G A T G C A C G T A C G T G T A C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
T G C A G A T C A G C T G A C T T C G A C T A G G A C T C G A T G C T A C G T A A G T C G A C T C T G A T C G A C T G A G T C A C T G A