Information for 25-GAGTGCTTCA (Motif 35)

A C T G C G T A A C T G A C G T A C T G A G T C A C G T A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A C G T A A C T G A G T C C G T A A G T C A C G T A G T C
p-value:1e-2
log p-value:-6.379e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif68.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets123.0 +/- 0.0bp
Average Position of motif in Background91.5 +/- 99.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:1
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGCTTCA
TTAAGTGCTT--
A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C A C G T A C G T A G T C C G T A
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GAGTGCTTCA
TTRAGTGSYK--
A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C A C G T A C G T A G T C C G T A
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGCTTCA
CTTGAGTGGCT--
A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C A C G T A C G T A G T C C G T A
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T

PH0116.1_Nkx2-9/Jaspar

Match Rank:4
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GAGTGCTTCA---
TTTTAAGTACTTAAATT
A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C A C G T A C G T A G T C C G T A A C G T A C G T A C G T
C G A T G A C T G C A T C G A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C G T A G C T A C G A T G A C T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGCTTCA
TTGAGTGSTT--
A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C A C G T A C G T A G T C C G T A
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:6
Score:0.65
Offset:4
Orientation:forward strand
Alignment:GAGTGCTTCA
----GCTTCC
A C T G C G T A A C T G A C G T A C T G A G T C A C G T A C G T A G T C C G T A
A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C

PH0112.1_Nkx2-3/Jaspar

Match Rank:7
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GAGTGCTTCA--
CNTTAAGTACTTAANG
A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C A C G T A C G T A G T C C G T A A C G T A C G T
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G

CEBPG(var.2)/MA1636.1/Jaspar

Match Rank:8
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGCTTCA---
NNGATTGCATCATNN
A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C A C G T A C G T A G T C C G T A A C G T A C G T A C G T
C T G A C G A T C A T G T C G A G C A T C A G T C A T G G A T C C T G A G A C T G T A C G C T A A G C T G C A T G C A T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:9
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGCTTCA
CTYRAGTGSY---
A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C A C G T A C G T A G T C C G T A
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T A C G T

PH0117.1_Nkx3-1/Jaspar

Match Rank:10
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GAGTGCTTCA---
TACTAAGTACTTAAATG
A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C A C G T A C G T A G T C C G T A A C G T A C G T A C G T
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G