Information for 3-CCGCTTAATA (Motif 3)

A G T C A G T C A C T G A G T C A C G T A C G T C G T A C G T A A C G T C G T A
Reverse Opposite:
A C G T C G T A A C G T A C G T C G T A C G T A A C T G A G T C A C T G A C T G
p-value:1e-4
log p-value:-1.050e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets195.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3-1/MA0124.2/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CCGCTTAATA
ACCACTTAA--
A C G T A G T C A G T C A C T G A G T C A C G T A C G T C G T A C G T A A C G T C G T A
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:2
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CCGCTTAATA--
CTTAACCACTTAAGGAT
A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C T G A G T C A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C G T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

Nkx3-2/MA0122.3/Jaspar

Match Rank:3
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CCGCTTAATA
ATAACCACTTAAA-
A C G T A C G T A C G T A C G T A G T C A G T C A C T G A G T C A C G T A C G T C G T A C G T A A C G T C G T A
C G T A C G A T C G T A C G T A T G A C G A T C G C T A G T A C G C A T G A C T G C T A C G T A G C T A A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:4
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CCGCTTAATA--
CATAACCACTTAACAAC
A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C T G A G T C A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

PH0115.1_Nkx2-6/Jaspar

Match Rank:5
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CCGCTTAATA--
TAAGCCACTTAACATT
A C G T A C G T A C G T A C G T A G T C A G T C A C T G A G T C A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C G T
C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

BARHL2/MA0635.1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CCGCTTAATA
ANCGTTTANN-
A C G T A G T C A G T C A C T G A G T C A C G T A C G T C G T A C G T A A C G T C G T A
C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C A C G T

BARHL1/MA0877.2/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCGCTTAATA
NCGTTTAN--
A G T C A G T C A C T G A G T C A C G T A C G T C G T A C G T A A C G T C G T A
G T A C G A T C C T A G G C A T A C G T G C A T C G T A A T C G A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:8
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CCGCTTAATA
---TTTAAT-
A G T C A G T C A C T G A G T C A C G T A C G T C G T A C G T A A C G T C G T A
A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T

NKX6-2/MA0675.1/Jaspar

Match Rank:9
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CCGCTTAATA--
----TTAATTAN
A G T C A G T C A C T G A G T C A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C G A T G A C T C G T A C G T A C G A T C A G T C T G A T A C G

PH0114.1_Nkx2-5/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CCGCTTAATA--
TAAGCCACTTGAATTT
A C G T A C G T A C G T A C G T A G T C A G T C A C T G A G T C A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C G T
G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T