Information for 5-CTTAGCAT (Motif 33)

A G T C A C G T A C G T C G T A A C T G A T G C C G T A A C G T
Reverse Opposite:
C G T A A C G T A T C G G T A C A C G T C G T A C G T A A C T G
p-value:1e-5
log p-value:-1.300e+01
Information Content per bp:1.931
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif4.19%
Number of Background Sequences with motif840.4
Percentage of Background Sequences with motif1.75%
Average Position of motif in Targets100.8 +/- 61.6bp
Average Position of motif in Background99.6 +/- 58.2bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---CTTAGCAT-
BTVATTWGCATA
A C G T A C G T A C G T A G T C A C G T A C G T C G T A A C T G A T G C C G T A A C G T A C G T
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---CTTAGCAT-
CTCATTTGCATW
A C G T A C G T A C G T A G T C A C G T A C G T C G T A A C T G A T G C C G T A A C G T A C G T
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A

NFIC/MA0161.2/Jaspar

Match Rank:3
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--CTTAGCAT-
TACTTGGCAGA
A C G T A C G T A G T C A C G T A C G T C G T A A C T G A T G C C G T A A C G T A C G T
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A

POU3F4/MA0789.1/Jaspar

Match Rank:4
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CTTAGCAT-
ATTTGCATA
A G T C A C G T A C G T C G T A A C T G A T G C C G T A A C G T A C G T
G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A

POU5F1/MA1115.1/Jaspar

Match Rank:5
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CTTAGCAT--
NATTTGCATNN
A C G T A G T C A C G T A C G T C G T A A C T G A T G C C G T A A C G T A C G T A C G T
G T C A C G T A C G A T G A C T C G A T T C A G G A T C C T G A A G C T C G T A G C A T

POU5F1B/MA0792.1/Jaspar

Match Rank:6
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CTTAGCAT-
ATTTGCATA
A G T C A C G T A C G T C G T A A C T G A T G C C G T A A C G T A C G T
G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A

POU3F1/MA0786.1/Jaspar

Match Rank:7
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CTTAGCAT--
TAATTTGCATAA
A C G T A C G T A G T C A C G T A C G T C G T A A C T G A T G C C G T A A C G T A C G T A C G T
C G A T G T C A G C T A G C A T G C A T G C A T T C A G G T A C C T G A G A C T C G T A G C T A

POU3F2/MA0787.1/Jaspar

Match Rank:8
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CTTAGCAT--
TAATTTGCATAA
A C G T A C G T A G T C A C G T A C G T C G T A A C T G A T G C C G T A A C G T A C G T A C G T
C G A T T G C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A A G C T C G T A G C T A

POU2F1/MA0785.1/Jaspar

Match Rank:9
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CTTAGCAT---
AATTTGCATANT
A C G T A G T C A C G T A C G T C G T A A C T G A T G C C G T A A C G T A C G T A C G T A C G T
G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CTTAGCAT--
ATTTGCATAA
A G T C A C G T A C G T C G T A A C T G A T G C C G T A A C G T A C G T A C G T
C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A