Information for 17-ATGCGTAT (Motif 42)

C G T A A C G T A T C G A T G C A C T G C A G T C T G A A G C T
Reverse Opposite:
C T G A G A C T G T C A T G A C T A C G A T G C G T C A G C A T
p-value:1e-2
log p-value:-5.277e+00
Information Content per bp:1.795
Number of Target Sequences with motif134.0
Percentage of Target Sequences with motif7.14%
Number of Background Sequences with motif2711.4
Percentage of Background Sequences with motif5.69%
Average Position of motif in Targets107.3 +/- 54.3bp
Average Position of motif in Background100.1 +/- 61.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.76
Offset:0
Orientation:forward strand
Alignment:ATGCGTAT--
ATGMATATDC
C G T A A C G T A T C G A T G C A C T G C A G T C T G A A G C T A C G T A C G T
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.74
Offset:0
Orientation:forward strand
Alignment:ATGCGTAT--
ATGAATATTC
C G T A A C G T A T C G A T G C A C T G C A G T C T G A A G C T A C G T A C G T
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

POU3F4/MA0789.1/Jaspar

Match Rank:3
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-ATGCGTAT
TATGCAAAT
A C G T C G T A A C G T A T C G A T G C A C T G C A G T C T G A A G C T
G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T

PH0145.1_Pou2f3/Jaspar

Match Rank:4
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----ATGCGTAT----
TTGTATGCAAATTAGA
A C G T A C G T A C G T A C G T C G T A A C G T A T C G A T G C A C T G C A G T C T G A A G C T A C G T A C G T A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0144.1_Pou2f2/Jaspar

Match Rank:5
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----ATGCGTAT----
TTGTATGCAAATTAGA
A C G T A C G T A C G T A C G T C G T A A C G T A T C G A T G C A C T G C A G T C T G A A G C T A C G T A C G T A C G T A C G T
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

POU2F2/MA0507.1/Jaspar

Match Rank:6
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--ATGCGTAT---
ATATGCAAATNNN
A C G T A C G T C G T A A C G T A T C G A T G C A C T G C A G T C T G A A G C T A C G T A C G T A C G T
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-ATGCGTAT---
TATGCWAATBAV
A C G T C G T A A C G T A T C G A T G C A C T G C A G T C T G A A G C T A C G T A C G T A C G T
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

POU5F1B/MA0792.1/Jaspar

Match Rank:8
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-ATGCGTAT
TATGCAAAT
A C G T C G T A A C G T A T C G A T G C A C T G C A G T C T G A A G C T
G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--ATGCGTAT
TTATGCAAAT
A C G T A C G T C G T A A C G T A T C G A T G C A C T G C A G T C T G A A G C T
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-ATGCGTAT---
WATGCAAATGAG
A C G T C G T A A C G T A T C G A T G C A C T G C A G T C T G A A G C T A C G T A C G T A C G T
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G