Information for 6-ACTATGTATAAT (Motif 8)

C G T A A G T C A C G T C G T A A C G T A C T G A C G T C G T A A C G T C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T C G T A A C G T C G T A A G T C C G T A A C G T C G T A A C T G A C G T
p-value:1e-3
log p-value:-9.148e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets162.0 +/- 0.0bp
Average Position of motif in Background53.5 +/- 1.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0148.1_Pou3f3/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--ACTATGTATAAT---
AAAATATGCATAATAAA
A C G T A C G T C G T A A G T C A C G T C G T A A C G T A C T G A C G T C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.68
Offset:3
Orientation:forward strand
Alignment:ACTATGTATAAT-
---ATGAATATTC
C G T A A G T C A C G T C G T A A C G T A C T G A C G T C G T A A C G T C G T A C G T A A C G T A C G T
A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.67
Offset:3
Orientation:forward strand
Alignment:ACTATGTATAAT---
---ATGCATAATTCA
C G T A A G T C A C G T C G T A A C G T A C T G A C G T C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

Dmrt1/MA1603.1/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---ACTATGTATAAT
GNTACTTTGTATC--
A C G T A C G T A C G T C G T A A G T C A C G T C G T A A C G T A C T G A C G T C G T A A C G T C G T A C G T A A C G T
C A T G G C T A G C A T G C T A G A T C G C A T C G A T C G A T C T A G G C A T C G T A C G A T G A T C A C G T A C G T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:ACTATGTATAAT---
ACCGTGACTAATTNN
C G T A A G T C A C G T C G T A A C G T A C T G A C G T C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

MEF2B/MA0660.1/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ACTATGTATAAT
GCTATTTATAGC
C G T A A G T C A C G T C G T A A C G T A C T G A C G T C G T A A C G T C G T A C G T A A C G T
C A T G A G T C C A G T C G T A C G A T C G A T G C A T C G T A C G A T C T G A C A T G G A T C

MEF2D/MA0773.1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ACTATGTATAAT
TCTATTTATAGN
C G T A A G T C A C G T C G T A A C G T A C T G A C G T C G T A A C G T C G T A C G T A A C G T
C A G T A G T C A G C T C G T A C G A T G C A T C G A T G C T A C A G T C T G A C T A G G A C T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:ACTATGTATAAT----
-WYATGCATWATGCAT
C G T A A G T C A C G T C G T A A C G T A C T G A C G T C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:9
Score:0.61
Offset:3
Orientation:forward strand
Alignment:ACTATGTATAAT-
---ATGMATATDC
C G T A A G T C A C G T C G T A A C G T A C T G A C G T C G T A A C G T C G T A C G T A A C G T A C G T
A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.60
Offset:3
Orientation:forward strand
Alignment:ACTATGTATAAT------
---ATGAATWATTCATGA
C G T A A G T C A C G T C G T A A C G T A C T G A C G T C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A