Information for 3-TGAGAGGTCG (Motif 9)

A C G T A C T G C G T A A C T G C G T A A C T G A C T G A C G T A G T C A C T G
Reverse Opposite:
A G T C A C T G C G T A A G T C A G T C A C G T A G T C A C G T A G T C C G T A
p-value:1e-9
log p-value:-2.116e+01
Information Content per bp:1.530
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets120.6 +/- 10.7bp
Average Position of motif in Background136.7 +/- 8.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0140.1_Pknox1/Jaspar

Match Rank:1
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----TGAGAGGTCG--
GGATTGACAGGTCNTT
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G C G T A A C T G A C T G A C G T A G T C A C T G A C G T A C G T
A C T G A C T G C G T A C G A T A C G T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A C G T G A C T G C A T

ZNF135/MA1587.1/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TGAGAGGTCG---
TCAGGAGGTCGAGG
A C G T A C G T A C T G C G T A A C T G C G T A A C T G A C T G A C G T A G T C A C T G A C G T A C G T A C G T
G A C T A G T C C T G A C T A G A T C G T C G A T C A G A T C G G A C T A G T C T C A G T C G A T C A G T C A G

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TGAGAGGTCG
CTTGAGTGGCT-
A C G T A C G T A C G T A C T G C G T A A C T G C G T A A C T G A C T G A C G T A G T C A C T G
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T

PH0104.1_Meis2/Jaspar

Match Rank:4
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----TGAGAGGTCG--
NTATTGACAGGTNNTN
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G C G T A A C T G A C T G A C G T A G T C A C T G A C G T A C G T
C T A G C A G T G C T A C G A T G A C T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A G C T G C A T C G A T

PH0102.1_Meis1/Jaspar

Match Rank:5
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----TGAGAGGTCG--
NTATTGACAGCTNNTT
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G C G T A A C T G A C T G A C G T A G T C A C T G A C G T A C G T
C T A G A C G T C G T A C G A T A C G T A C T G C G T A A G T C C T G A A C T G A T G C G A C T T A G C A T C G G C A T G C A T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.66
Offset:2
Orientation:forward strand
Alignment:TGAGAGGTCG
--AGRGGTCA
A C G T A C T G C G T A A C T G C G T A A C T G A C T G A C G T A G T C A C T G
A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TGAGAGGTCG
TTGAGTGSTT-
A C G T A C G T A C T G C G T A A C T G C G T A A C T G A C T G A C G T A G T C A C T G
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T

PH0105.1_Meis3/Jaspar

Match Rank:8
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TGAGAGGTCG--
GTATTGACAGGTNNTT
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G C G T A A C T G A C T G A C G T A G T C A C T G A C G T A C G T
C A T G A C G T C G T A C G A T G A C T A C T G C G T A A G T C C T G A C T A G T A C G G A C T T G C A G C T A G A C T G C A T

NKX2-2/MA1645.1/Jaspar

Match Rank:9
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TGAGAGGTCG
NNNTTGAGTGGNNN
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G C G T A A C T G A C T G A C G T A G T C A C T G
C G A T C G A T A G T C A G C T C A G T T A C G C G T A C A T G C G A T C T A G A C T G G C A T C G A T C T G A

PH0141.1_Pknox2/Jaspar

Match Rank:10
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TGAGAGGTCG--
NNATTGACAGGTGCTT
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G C G T A A C T G A C T G A C G T A G T C A C T G A C G T A C G T
T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T