Information for 13-ATTAGGTCCC (Motif 27)

C G T A A C G T A C G T C G T A A C T G A C T G A C G T A G T C A G T C A G T C
Reverse Opposite:
A C T G A C T G A C T G C G T A A G T C A G T C A C G T C G T A C G T A A C G T
p-value:1e-3
log p-value:-7.679e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif7.14%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets157.0 +/- 0.0bp
Average Position of motif in Background112.0 +/- 65.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ATTAGGTCCC
WAABTAGGTCAV
A C G T A C G T C G T A A C G T A C G T C G T A A C T G A C T G A C G T A G T C A G T C A G T C
C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-ATTAGGTCCC
AAYTAGGTCA-
A C G T C G T A A C G T A C G T C G T A A C T G A C T G A C G T A G T C A G T C A G T C
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-ATTAGGTCCC
AAYTAGGTCA-
A C G T C G T A A C G T A C G T C G T A A C T G A C T G A C G T A G T C A G T C A G T C
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T

RORB/MA1150.1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-ATTAGGTCCC
AATTAGGTCAC
A C G T C G T A A C G T A C G T C G T A A C T G A C T G A C G T A G T C A G T C A G T C
C G T A G C T A C G A T A C G T C T G A A C T G C T A G A G C T G A T C C T G A G A T C

RORA(var.2)/MA0072.1/Jaspar

Match Rank:5
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----ATTAGGTCCC
TATAAGTAGGTCAA
A C G T A C G T A C G T A C G T C G T A A C G T A C G T C G T A A C T G A C T G A C G T A G T C A G T C A G T C
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

RORC/MA1151.1/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---ATTAGGTCCC
ATAAGTAGGTCA-
A C G T A C G T A C G T C G T A A C G T A C G T C G T A A C T G A C T G A C G T A G T C A G T C A G T C
C T G A C G A T G C T A C G T A A C T G A C G T T C G A C A T G C T A G A C G T A G T C C T G A A C G T

BARX1/MA0875.1/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---ATTAGGTCCC
GCAATTAG-----
A C G T A C G T A C G T C G T A A C G T A C G T C G T A A C T G A C T G A C G T A G T C A G T C A G T C
T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G A C G T A C G T A C G T A C G T A C G T

HOXB3/MA0903.1/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----ATTAGGTCCC
ACTAATTAGC----
A C G T A C G T A C G T A C G T C G T A A C G T A C G T C G T A A C T G A C T G A C G T A G T C A G T C A G T C
C T G A T A G C G A C T T G C A T C G A A G C T G A C T G C T A T C A G T G A C A C G T A C G T A C G T A C G T

PDX1/MA0132.2/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---ATTAGGTCCC
GTAATTAG-----
A C G T A C G T A C G T C G T A A C G T A C G T C G T A A C T G A C T G A C G T A G T C A G T C A G T C
T A C G G A C T T G C A G T C A A C G T A C G T C G T A T C A G A C G T A C G T A C G T A C G T A C G T

ZKSCAN1/MA1585.1/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--ATTAGGTCCC
ATAGTAGGTG--
A C G T A C G T C G T A A C G T A C G T C G T A A C T G A C T G A C G T A G T C A G T C A G T C
T C G A A G C T T G C A C T A G A C G T G T C A A T C G C A T G A G C T T A C G A C G T A C G T