Information for 16-CCATCAATGGGG (Motif 20)

A G T C A G T C C G T A A C G T A G T C C G T A C G T A A C G T A C T G A C T G A C T G A C T G
Reverse Opposite:
A G T C A G T C A G T C A G T C C G T A A C G T A C G T A C T G C G T A A C G T A C T G A C T G
p-value:1e-3
log p-value:-8.980e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets7.0 +/- 0.0bp
Average Position of motif in Background60.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0008.1_MADS_class/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CCATCAATGGGG
CCATATATGG--
A G T C A G T C C G T A A C G T A G T C C G T A C G T A A C G T A C T G A C T G A C T G A C T G
G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CCATCAATGGGG
-GAACAATGG--
A G T C A G T C C G T A A C G T A G T C C G T A C G T A A C G T A C T G A C T G A C T G A C T G
A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CCATCAATGGGG-
TCACCCATCAATAAACA
A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A G T C C G T A C G T A A C G T A C T G A C T G A C T G A C T G A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCATCAATGGGG
HNRAATCAAT----
A C G T A C G T A G T C A G T C C G T A A C G T A G T C C G T A C G T A A C G T A C T G A C T G A C T G A C T G
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T A C G T A C G T

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCATCAATGGGG
TNCCATATATGG--
A C G T A C G T A G T C A G T C C G T A A C G T A G T C C G T A C G T A A C G T A C T G A C T G A C T G A C T G
C A G T A C T G G A T C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G A T C G A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CCATCAATGGGG
VRAACAATGG--
A G T C A G T C C G T A A C G T A G T C C G T A C G T A A C G T A C T G A C T G A C T G A C T G
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCATCAATGGGG---
NNTNNACAATGGGANNN
A C G T A C G T A G T C A G T C C G T A A C G T A G T C C G T A C G T A A C G T A C T G A C T G A C T G A C T G A C G T A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CCATCAATGGGG
-GAACAATGGN-
A G T C A G T C C G T A A C G T A G T C C G T A C G T A A C G T A C T G A C T G A C T G A C T G
A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T

PB0040.1_Lef1_1/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CCATCAATGGGG--
NANAGATCAAAGGGNNN
A C G T A C G T A C G T A G T C A G T C C G T A A C G T A G T C C G T A C G T A A C G T A C T G A C T G A C T G A C T G A C G T A C G T
A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CCATCAATGGGG
ACWTCAAAGG--
A G T C A G T C C G T A A C G T A G T C C G T A C G T A A C G T A C T G A C T G A C T G A C T G
C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G A C G T A C G T