Information for 5-CGGCAAGCAAGG (Motif 6)

A G T C A C T G A C T G A G T C C G T A C G T A A C T G A G T C C G T A C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T A C G T A C T G G T A C A C G T A C G T A C T G A G T C A G T C A C T G
p-value:1e-15
log p-value:-3.543e+01
Information Content per bp:1.972
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets118.4 +/- 60.6bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZFP57/MA1583.1/Jaspar

Match Rank:1
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CGGCAAGCAAGG
NNTGCGGCAANNN---
A C G T A C G T A C G T A C G T A G T C A C T G A C T G A G T C C G T A C G T A A C T G A G T C C G T A C G T A A C T G A C T G
T C G A A T G C A G C T T A C G G A T C A T C G C T A G A T G C T G C A T G C A A G C T T A C G T A G C A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:2
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CGGCAAGCAAGG
--CCAATCAA--
A G T C A C T G A C T G A G T C C G T A C G T A A C T G A G T C C G T A C G T A A C T G A C T G
A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CGGCAAGCAAGG
TBGCACGCAA--
A G T C A C T G A C T G A G T C C G T A C G T A A C T G A G T C C G T A C G T A A C T G A C T G
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CGGCAAGCAAGG
AAGGCAAGTGT--
A C G T A G T C A C T G A C T G A G T C C G T A C G T A A C T G A G T C C G T A C G T A A C T G A C T G
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:5
Score:0.56
Offset:7
Orientation:forward strand
Alignment:CGGCAAGCAAGG-----
-------CAAGGHCANV
A G T C A C T G A C T G A G T C C G T A C G T A A C T G A G T C C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

FOXN3/MA1489.1/Jaspar

Match Rank:6
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CGGCAAGCAAGG
--GTAAACAA--
A G T C A C T G A C T G A G T C C G T A C G T A A C T G A G T C C G T A C G T A A C T G A C T G
A C G T A C G T A C T G A C G T C G T A C G T A C G T A A G T C C G T A C G T A A C G T A C G T

NR5A1/MA1540.1/Jaspar

Match Rank:7
Score:0.55
Offset:5
Orientation:forward strand
Alignment:CGGCAAGCAAGG----
-----GTCAAGGTCAC
A G T C A C T G A C T G A G T C C G T A C G T A A C T G A G T C C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C T G G A C T A T G C C T G A C G T A A C T G A C T G G A C T A G T C C T G A G A T C

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CGGCAAGCAAGG
-RGCAATNAAA-
A G T C A C T G A C T G A G T C C G T A C G T A A C T G A G T C C G T A C G T A A C T G A C T G
A C G T C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A A C G T

Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CGGCAAGCAAGG
TGCSGCANTN----
A C G T A C G T A G T C A C T G A C T G A G T C C G T A C G T A A C T G A G T C C G T A C G T A A C T G A C T G
A G C T T C A G G A T C A T C G T C A G A T G C T G C A G T C A C G A T C T A G A C G T A C G T A C G T A C G T

FOXK1/MA0852.2/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CGGCAAGCAAGG-
AATGTAAACAAGGC
A C G T A G T C A C T G A C T G A G T C C G T A C G T A A C T G A G T C C G T A C G T A A C T G A C T G A C G T
C G T A C T G A C A G T T C A G C G A T T G C A T G C A G T C A A G T C G T C A T C G A T A C G T A C G T G A C