Information for 2-MCTWTABTSTCT (Motif 2)

G T A C G T A C A G C T C G T A A G C T G T C A A C T G A G C T A T G C A C G T T A G C A C G T
Reverse Opposite:
G T C A A T C G C G T A A T C G C T G A T G A C A C G T C T G A C G A T C T G A C A T G C A T G
p-value:1e-7
log p-value:-1.620e+01
Information Content per bp:1.682
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif41.67%
Number of Background Sequences with motif642.2
Percentage of Background Sequences with motif1.04%
Average Position of motif in Targets142.0 +/- 39.7bp
Average Position of motif in Background98.2 +/- 74.5bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17/MA0078.1/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:forward strand
Alignment:MCTWTABTSTCT
--CTCATTGTC-
G T A C G T A C A G C T C G T A A G C T G T C A A C T G A G C T A T G C A C G T T A G C A C G T
A C G T A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:MCTWTABTSTCT
ACTTTCGTTTCT
G T A C G T A C A G C T C G T A A G C T G T C A A C T G A G C T A T G C A C G T T A G C A C G T
T G C A A T G C A C G T A C G T A C G T A T G C C T A G A C G T A C G T A G C T G A T C A G C T

PB0168.1_Sox14_2/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:MCTWTABTSTCT---
NNNCCATTGTGTNAN
G T A C G T A C A G C T C G T A A G C T G T C A A C T G A G C T A T G C A C G T T A G C A C G T A C G T A C G T A C G T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

Mecom/MA0029.1/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-MCTWTABTSTCT-
TNTTATCTTATCTT
A C G T G T A C G T A C A G C T C G T A A G C T G T C A A C T G A G C T A T G C A C G T T A G C A C G T A C G T
A C G T T A C G A G C T C G A T C T G A A C G T A G T C A G C T A C G T C T G A A C G T T A G C G C A T G A C T

TCF7L1/MA1421.1/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:MCTWTABTSTCT
CCTTTGATCTTT
G T A C G T A C A G C T C G T A A G C T G T C A A C T G A G C T A T G C A C G T T A G C A C G T
A G T C T A G C A G C T A C G T A C G T A C T G T G C A G C A T T A G C C G A T A G C T C G A T

PB0183.1_Sry_2/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:MCTWTABTSTCT-----
CNNNTATTGTTCNNNNN
G T A C G T A C A G C T C G T A A G C T G T C A A C T G A G C T A T G C A C G T T A G C A C G T A C G T A C G T A C G T A C G T A C G T
A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A

LEF1/MA0768.1/Jaspar

Match Rank:7
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---MCTWTABTSTCT
AACCCTTTGATCTTT
A C G T A C G T A C G T G T A C G T A C A G C T C G T A A G C T G T C A A C T G A G C T A T G C A C G T T A G C A C G T
C G T A G C T A A G T C A G T C A G T C G A C T A G C T C G A T A T C G C G T A G C A T A T G C G A C T G A C T A G C T

Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:MCTWTABTSTCT-
-CTTTGATGTGSB
G T A C G T A C A G C T C G T A A G C T G T C A A C T G A G C T A T G C A C G T T A G C A C G T A C G T
A C G T A G T C G A C T A G C T C G A T A T C G G C T A C G A T A T C G C G A T A C T G T A C G A C G T

GATA6/MA1104.2/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:MCTWTABTSTCT--
-TTATCTTATCTTT
G T A C G T A C A G C T C G T A A G C T G T C A A C T G A G C T A T G C A C G T T A G C A C G T A C G T A C G T
A C G T G C A T G C A T G C T A A G C T A T G C G C A T G C A T C G T A G C A T G A T C G C A T G A C T G C A T

SOX15/MA1152.1/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:MCTWTABTSTCT-
---CTATTGTTTT
G T A C G T A C A G C T C G T A A G C T G T C A A C T G A G C T A T G C A C G T T A G C A C G T A C G T
A C G T A C G T A C G T A G T C G A C T C G T A A C G T C G A T T C A G C G A T G A C T G A C T G C A T