Information for 2-AGTAAAGG (Motif 27)

C G T A C A T G A G C T T C G A C G T A C G T A C T A G A T C G
Reverse Opposite:
T A G C G A T C G C A T C G A T A G C T C T G A G T A C A C G T
p-value:1e-6
log p-value:-1.580e+01
Information Content per bp:1.783
Number of Target Sequences with motif118.0
Percentage of Target Sequences with motif15.13%
Number of Background Sequences with motif4313.4
Percentage of Background Sequences with motif9.31%
Average Position of motif in Targets106.0 +/- 54.3bp
Average Position of motif in Background100.2 +/- 60.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3a/MA0151.1/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AGTAAAGG
ATTAAA--
C G T A C A T G A G C T T C G A C G T A C G T A C T A G A T C G
C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T

BARHL1/MA0877.2/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AGTAAAGG-
-CTAAACGG
C G T A C A T G A G C T T C G A C G T A C G T A C T A G A T C G A C G T
A C G T T A G C C G A T C G T A G T C A C G T A A G T C C T A G C A T G

BARHL2/MA0635.1/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGTAAAGG--
GCTAAACGGT
C G T A C A T G A G C T T C G A C G T A C G T A C T A G A T C G A C G T A C G T
T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T

Nr2e1/MA0676.1/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AGTAAAGG
AAAAGTCAA--
A C G T A C G T A C G T C G T A C A T G A G C T T C G A C G T A C G T A C T A G A T C G
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AGTAAAGG-
NGYCATAAAWCH
A C G T A C G T A C G T C G T A C A T G A G C T T C G A C G T A C G T A C T A G A T C G A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AGTAAAGG---
ANGNAAAGGTCA
A C G T C G T A C A T G A G C T T C G A C G T A C G T A C T A G A T C G A C G T A C G T A C G T
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

HMBOX1/MA0895.1/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AGTAAAGG
ACTAGTTAAC-
A C G T A C G T A C G T C G T A C A T G A G C T T C G A C G T A C G T A C T A G A T C G
T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C A C G T

MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:8
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----AGTAAAGG--
TTCAAAWTAAAAGTC
A C G T A C G T A C G T A C G T A C G T C G T A C A T G A G C T T C G A C G T A C G T A C T A G A T C G A C G T A C G T
C A G T G A C T A G T C G C T A C T G A G T C A C G T A A G C T G T C A C T G A C T G A C T G A A C T G A G C T G A T C

OVOL2/MA1545.1/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGTAAAGG---
NNNNTAACGGTNN
A C G T A C G T C G T A C A T G A G C T T C G A C G T A C G T A C T A G A T C G A C G T A C G T A C G T
T A G C C T G A G T A C T C G A A G C T G T C A C T G A A G T C A T C G A T C G C G A T G C T A G A T C

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AGTAAAGG-
GAAAGTGAAAGT
A C G T A C G T A C G T C G T A C A T G A G C T T C G A C G T A C G T A C T A G A T C G A C G T
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T