Information for 7-GCCCGACACA (Motif 31)

A C T G A G T C A G T C A G T C A C T G C G T A A G T C C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T A C T G A C G T A G T C A C T G A C T G A C T G A G T C
p-value:1e-3
log p-value:-8.175e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets24.0 +/- 0.0bp
Average Position of motif in Background144.3 +/- 35.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GCCCGACACA---
CAAATCCAGACATCACA
A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G T C A C T G C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

ZNF449/MA1656.1/Jaspar

Match Rank:2
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GCCCGACACA
CCAAGCCCAACCAG
A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G T C A C T G C G T A A G T C C G T A A G T C C G T A
G T A C T G A C T G C A G C T A C T A G T A G C G T A C G T A C G C T A C T G A T G A C G T A C G T C A T A C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCCCGACACA
-CCAGACAG-
A C T G A G T C A G T C A G T C A C T G C G T A A G T C C G T A A G T C C G T A
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

KLF4/MA0039.4/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GCCCGACACA-
CGCCCCACCCCC
A C G T A C T G A G T C A G T C A G T C A C T G C G T A A G T C C G T A A G T C C G T A A C G T
T A G C A T C G G A T C G A T C G T A C G T A C C T G A A T G C T A G C G A T C G T A C A T G C

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCCCGACACA
GCCACACCCA
A C T G A G T C A G T C A G T C A C T G C G T A A G T C C G T A A G T C C G T A
C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A

PB0164.1_Smad3_2/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GCCCGACACA---
TACGCCCCGCCACTCTG
A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G T C A C T G C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

Smad4/MA1153.1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCCCGACACA
TCTAGACA--
A C T G A G T C A G T C A G T C A C T G C G T A A G T C C G T A A G T C C G T A
A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T A C G T

PB0117.1_Eomes_2/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCCCGACACA-----
NNGGCGACACCTCNNN
A C G T A C T G A G T C A G T C A G T C A C T G C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A T C G T C G A T C A G A T C G T G A C C T A G G C T A A G T C C T G A A T G C A G T C G A C T G A T C A G T C T A C G A G T C

IRF6/MA1509.1/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCCCGACACA
-ACCGAAACT
A C T G A G T C A G T C A G T C A C T G C G T A A G T C C G T A A G T C C G T A
A C G T T C G A G A T C A T G C C T A G C G T A C G T A C T G A A T G C G A C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GCCCGACACA-
-CCAGACRSVB
A C T G A G T C A G T C A G T C A C T G C G T A A G T C C G T A A G T C C G T A A C G T
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C