Information for 1-CCCGACAC (Motif 7)

A G T C A G T C A G T C A C T G C G T A A G T C C G T A A G T C
Reverse Opposite:
A C T G A C G T A C T G A C G T A G T C A C T G A C T G A C T G
p-value:1e-3
log p-value:-8.958e+00
Information Content per bp:1.530
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif38.46%
Number of Background Sequences with motif3113.9
Percentage of Background Sequences with motif4.22%
Average Position of motif in Targets122.8 +/- 52.5bp
Average Position of motif in Background99.3 +/- 65.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0164.1_Smad3_2/Jaspar

Match Rank:1
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----CCCGACAC----
TACGCCCCGCCACTCTG
A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C T G C G T A A G T C C G T A A G T C A C G T A C G T A C G T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----CCCGACAC----
CAAATCCAGACATCACA
A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C T G C G T A A G T C C G T A A G T C A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

PB0117.1_Eomes_2/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CCCGACAC------
NNGGCGACACCTCNNN
A C G T A C G T A G T C A G T C A G T C A C T G C G T A A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A T C G T C G A T C A G A T C G T G A C C T A G G C T A A G T C C T G A A T G C A G T C G A C T G A T C A G T C T A C G A G T C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CCCGACAC
CCAGACAG
A G T C A G T C A G T C A C T G C G T A A G T C C G T A A G T C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

IRF6/MA1509.1/Jaspar

Match Rank:5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CCCGACAC-
ACCGAAACT
A G T C A G T C A G T C A C T G C G T A A G T C C G T A A G T C A C G T
T C G A G A T C A T G C C T A G C G T A C G T A C T G A A T G C G A C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CCCGACAC--
CCAGACRSVB
A G T C A G T C A G T C A C T G C G T A A G T C C G T A A G T C A C G T A C G T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad4/MA1153.1/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CCCGACAC
TCTAGACA-
A C G T A G T C A G T C A G T C A C T G C G T A A G T C C G T A A G T C
A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T

KLF4/MA0039.4/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCCGACAC--
CGCCCCACCCCC
A C G T A C G T A G T C A G T C A G T C A C T G C G T A A G T C C G T A A G T C A C G T A C G T
T A G C A T C G G A T C G A T C G T A C G T A C C T G A A T G C T A G C G A T C G T A C A T G C

PB0036.1_Irf6_1/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CCCGACAC------
CTGATCGAAACCAAAGT
A C G T A C G T A C G T A G T C A G T C A G T C A C T G C G T A A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G T A C C G A T C A T G C T G A G A C T G A T C C T A G T C G A C G T A C G T A T A G C A G T C T C G A T G C A C G T A C A T G C G A T

TBX3/MA1566.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CCCGACAC---
-NTCACACCTN
A G T C A G T C A G T C A C T G C G T A A G T C C G T A A G T C A C G T A C G T A C G T
A C G T A G C T G A C T T A G C T C G A A G T C C T G A A T G C A T G C G A C T G A T C