Information for 1-GAGGGCAACG (Motif 8)

A C T G C G T A A C T G A C T G A C T G A G T C C G T A C G T A A G T C A C T G
Reverse Opposite:
A G T C A C T G A C G T A C G T A C T G A G T C A G T C A G T C A C G T A G T C
p-value:1e-3
log p-value:-8.189e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif6.25%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets189.0 +/- 0.0bp
Average Position of motif in Background71.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RFX7/MA1554.1/Jaspar

Match Rank:1
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:GAGGGCAACG
-NTAGCAACG
A C T G C G T A A C T G A C T G A C T G A G T C C G T A C G T A A G T C A C T G
A C G T C T G A G A C T T C G A T A C G G A T C C T G A C T G A A T G C T A C G

THAP1/MA0597.1/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GAGGGCAACG
TNNGGGCAG--
A C G T A C T G C G T A A C T G A C T G A C T G A G T C C G T A C G T A A G T C A C T G
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GAGGGCAACG
TRAGGTCA---
A C G T A C T G C G T A A C T G A C T G A C T G A G T C C G T A C G T A A G T C A C T G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GAGGGCAACG
NGTGGGCAT--
A C G T A C T G C G T A A C T G A C T G A C T G A G T C C G T A C G T A A G T C A C T G
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GAGGGCAACG
AGRGGTCA---
A C G T A C T G C G T A A C T G A C T G A C T G A G T C C G T A C G T A A G T C A C T G
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T

RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GAGGGCAACG
CAAAGKTCAA--
A C G T A C G T A C T G C G T A A C T G A C T G A C T G A G T C C G T A C G T A A G T C A C T G
G A T C G T C A T C G A T C G A C T A G C A T G A G C T G T A C T C G A T C G A A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GAGGGCAACG----
TAGGGCAAAGGTCA
A C T G C G T A A C T G A C T G A C T G A G T C C G T A C G T A A G T C A C T G A C G T A C G T A C G T A C G T
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer

Match Rank:8
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GAGGGCAACG
GKBCARAGGTCA---
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C T G A C T G A G T C C G T A C G T A A G T C A C T G
T A C G A C T G A G C T G T A C C G T A T C G A C T G A A C T G C A T G A C G T A G T C C G T A A C G T A C G T A C G T

RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GAGGGCAACG---
-AGGTCAAGGTCA
A C T G C G T A A C T G A C T G A C T G A G T C C G T A C G T A A G T C A C T G A C G T A C G T A C G T
A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer

Match Rank:10
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GAGGGCAACG
NBYCAAGGTCAC--
A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C T G A C T G A G T C C G T A C G T A A G T C A C T G
A T C G A T G C A G C T T A G C T C G A C T G A C T A G A C T G C A G T A T G C C T G A G T A C A C G T A C G T