Information for 5-MATAMWRCWARA (Motif 6)

G T A C C G T A A C G T C G T A G T C A C G A T C T A G A G T C C G T A C G T A C T A G C G T A
Reverse Opposite:
C G A T A G T C A C G T C G A T A C T G A G T C C G T A A C G T A C G T C G T A A C G T A C T G
p-value:1e-6
log p-value:-1.431e+01
Information Content per bp:1.810
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif275.9
Percentage of Background Sequences with motif0.43%
Average Position of motif in Targets105.2 +/- 29.6bp
Average Position of motif in Background92.7 +/- 71.8bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD13/MA0909.2/Jaspar

Match Rank:1
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---MATAMWRCWARA
CCCAATAAAAC----
A C G T A C G T A C G T G T A C C G T A A C G T C G T A G T C A C G A T C T A G A G T C C G T A C G T A C T A G C G T A
T A G C T A G C A G T C G T C A C T G A C G A T C G T A C T G A G T C A T G C A T G A C A C G T A C G T A C G T A C G T

PB0129.1_Glis2_2/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:MATAMWRCWARA--
AATATTAATAAAGA
G T A C C G T A A C G T C G T A G T C A C G A T C T A G A G T C C G T A C G T A C T A G C G T A A C G T A C G T
G C T A C G T A A C G T C T G A C G A T C A G T C T G A G C T A G C A T G C T A C G T A G T C A C T A G T C G A

CDX1/MA0878.2/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---MATAMWRCWARA
GGCCATAAAAC----
A C G T A C G T A C G T G T A C C G T A A C G T C G T A G T C A C G A T C T A G A G T C C G T A C G T A C T A G C G T A
C A T G C T A G A G T C T G A C C G T A A C G T C T G A C G T A C T G A G T C A A G T C A C G T A C G T A C G T A C G T

CDX4/MA1473.1/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---MATAMWRCWARA
GGCAATAAAAC----
A C G T A C G T A C G T G T A C C G T A A C G T C G T A G T C A C G A T C T A G A G T C C G T A C G T A C T A G C G T A
C A T G T C A G A G T C T G C A C G T A A C G T C G T A C G T A G T C A G T C A A G T C A C G T A C G T A C G T A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--MATAMWRCWARA
CTAATATTGCTAAA
A C G T A C G T G T A C C G T A A C G T C G T A G T C A C G A T C T A G A G T C C G T A C G T A C T A G C G T A
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--MATAMWRCWARA
CTAATATTGCTAAA
A C G T A C G T G T A C C G T A A C G T C G T A G T C A C G A T C T A G A G T C C G T A C G T A C T A G C G T A
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

HOXA13/MA0650.2/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---MATAMWRCWARA
CCCAATAAAAC----
A C G T A C G T A C G T G T A C C G T A A C G T C G T A G T C A C G A T C T A G A G T C C G T A C G T A C T A G C G T A
T G A C T A G C A G T C G T C A C G T A A C G T C T G A C T G A C G T A G T C A G T A C A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--MATAMWRCWARA
GTCATAAAAN----
A C G T A C G T G T A C C G T A A C G T C G T A G T C A C G A T C T A G A G T C C G T A C G T A C T A G C G T A
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----MATAMWRCWARA
AATGCAATAAAATTTAT
A C G T A C G T A C G T A C G T A C G T G T A C C G T A A C G T C G T A G T C A C G A T C T A G A G T C C G T A C G T A C T A G C G T A
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

PBX2/MA1113.2/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--MATAMWRCWARA
GTCATAAATCATT-
A C G T A C G T G T A C C G T A A C G T C G T A G T C A C G A T C T A G A G T C C G T A C G T A C T A G C G T A
T C A G G A C T G T A C C T G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G A C T G C A T A C G T