Information for 3-TAAATRTCTTAY (Motif 3)

A C G T G T C A G T C A G T C A G C A T C T G A C G A T A G T C A C G T A C G T G T C A G A C T
Reverse Opposite:
C T G A C A G T G T C A C G T A C T A G C G T A G A C T C G T A A C G T C A G T A C G T G T C A
p-value:1e-6
log p-value:-1.387e+01
Information Content per bp:1.629
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif66.67%
Number of Background Sequences with motif6539.2
Percentage of Background Sequences with motif8.46%
Average Position of motif in Targets110.7 +/- 39.7bp
Average Position of motif in Background101.9 +/- 70.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GATA6/MA1104.2/Jaspar

Match Rank:1
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TAAATRTCTTAY----
---TTATCTTATCTTT
A C G T G T C A G T C A G T C A G C A T C T G A C G A T A G T C A C G T A C G T G T C A G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T G C A T G C T A A G C T A T G C G C A T G C A T C G T A G C A T G A T C G C A T G A C T G C A T

PH0075.1_Hoxd10/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TAAATRTCTTAY------
-NTNAATTTTATTGNATT
A C G T G T C A G T C A G T C A G C A T C T G A C G A T A G T C A C G T A C G T G T C A G A C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

PB0021.1_Gata3_1/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TAAATRTCTTAY---------
NNTNANTTCTTATCTCTANANN
A C G T A C G T G T C A G T C A G T C A G C A T C T G A C G A T A G T C A C G T A C G T G T C A G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T A C A G C T C A G T G C A T T G C A C G A T G A C T A C G T A T G C C G A T C G A T C G T A A C G T A G T C C G A T G T A C G A C T G C T A G C T A C G T A G T C A T C G A

HOXB13/MA0901.2/Jaspar

Match Rank:4
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TAAATRTCTTAY-----
---NNATTTTATTGGNN
A C G T G T C A G T C A G T C A G C A T C T G A C G A T A G T C A C G T A C G T G T C A G A C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A C G T A C G T A C G A T C G A T C G A T G C A T T G C A G C A T C G A T C T A G C A T G G C A T G C A T

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TAAATRTCTTAY--
AGAAATGACTTCCCT
A C G T A C G T G T C A G T C A G T C A G C A T C T G A C G A T A G T C A C G T A C G T G T C A G A C T A C G T A C G T
C T G A C T A G T G C A C T G A T C G A A G C T C A T G T C G A A G T C G A C T A C G T A G T C G A T C G A T C G A C T

PH0078.1_Hoxd13/Jaspar

Match Rank:6
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TAAATRTCTTAY------
--NNANTTTTATTGGNNN
A C G T G T C A G T C A G T C A G C A T C T G A C G A T A G T C A C G T A C G T G T C A G A C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:7
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:TAAATRTCTTAY---
-----NTTTTATGAC
A C G T G T C A G T C A G T C A G C A T C T G A C G A T A G T C A C G T A C G T G T C A G A C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:TAAATRTCTTAY----
------TTTTATTRGN
A C G T G T C A G T C A G T C A G C A T C T G A C G A T A G T C A C G T A C G T G T C A G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C G T G C A T C G T A G A C T C A G T C T A G A T C G G A T C

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:9
Score:0.53
Offset:6
Orientation:forward strand
Alignment:TAAATRTCTTAY----
------TTTTATKRGG
A C G T G T C A G T C A G T C A G C A T C T G A C G A T A G T C A C G T A C G T G T C A G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:TAAATRTCTTAY---
-----NTTTTATDRG
A C G T G T C A G T C A G T C A G C A T C T G A C G A T A G T C A C G T A C G T G T C A G A C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G G C A T A C G T G C A T G A C T C G T A G A C T C A T G C T A G A T C G