Information for 12-TWATAGCTCACC (Motif 22)

A C G T C G T A C G T A C G A T C G T A A C T G G T A C A G C T G T A C C G T A A G T C A G T C
Reverse Opposite:
C T A G A C T G C G A T A C T G C T G A A C T G A G T C A C G T C G T A A C G T C G A T C G T A
p-value:1e-8
log p-value:-1.959e+01
Information Content per bp:1.826
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.11%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets120.3 +/- 57.0bp
Average Position of motif in Background45.7 +/- 38.6bp
Strand Bias (log2 ratio + to - strand density)2.7
Multiplicity (# of sites on avg that occur together)1.88
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0053.1_Rara_1/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TWATAGCTCACC--
TCTCAAAGGTCACCTG
A C G T A C G T A C G T C G T A C G T A C G A T C G T A A C T G G T A C A G C T G T A C C G T A A G T C A G T C A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

NR4A2/MA0160.1/Jaspar

Match Rank:2
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TWATAGCTCACC
---AAGGTCAC-
A C G T C G T A C G T A C G A T C G T A A C T G G T A C A G C T G T A C C G T A A G T C A G T C
A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TWATAGCTCACC--
TCTCAAAGGTCACGAG
A C G T A C G T A C G T C G T A C G T A C G A T C G T A A C T G G T A C A G C T G T A C C G T A A G T C A G T C A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

PB0135.1_Hoxa3_2/Jaspar

Match Rank:4
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---TWATAGCTCACC
CCTTAATNGNTTTT-
A C G T A C G T A C G T A C G T C G T A C G T A C G A T C G T A A C T G G T A C A G C T G T A C C G T A A G T C A G T C
A G T C A T G C G A C T C G A T C G T A C G T A A C G T T C A G A C T G G C A T C G A T G A C T C A G T A G C T A C G T

NR1I3/MA1534.1/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TWATAGCTCACC
--AAAGTTCAT-
A C G T C G T A C G T A C G A T C G T A A C T G G T A C A G C T G T A C C G T A A G T C A G T C
A C G T A C G T C G T A C T G A C T G A A C T G A C G T C A G T A G T C C T G A G A C T A C G T

VENTX/MA0724.1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TWATAGCTCACC
CTAATCGNT----
A C G T A C G T C G T A C G T A C G A T C G T A A C T G G T A C A G C T G T A C C G T A A G T C A G T C
G A T C A C G T C G T A C G T A C A G T A G T C C T A G A C T G G C A T A C G T A C G T A C G T A C G T

NR4A1/MA1112.2/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TWATAGCTCACC
TTAAAGGTCAAA
A C G T C G T A C G T A C G A T C G T A A C T G G T A C A G C T G T A C C G T A A G T C A G T C
C A G T G C A T C T G A C T G A T C G A C A T G C A T G A C G T A G T C C T G A T C G A C T G A

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TWATAGCTCACC
NTAATKGTTT---
A C G T A C G T C G T A C G T A C G A T C G T A A C T G G T A C A G C T G T A C C G T A A G T C A G T C
A G T C G C A T T C G A T C G A C A G T C A T G T A C G G A C T G A C T A G C T A C G T A C G T A C G T

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TWATAGCTCACC
TTTNATTGCY----
A C G T A C G T A C G T C G T A C G T A C G A T C G T A A C T G G T A C A G C T G T A C C G T A A G T C A G T C
A C G T A C G T C G A T A C G T G T C A A C G T C A G T C T A G A T G C G A T C A C G T A C G T A C G T A C G T

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TWATAGCTCACC-----
CATAAGACCACCATTAC
A C G T C G T A C G T A C G A T C G T A A C T G G T A C A G C T G T A C C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A G T C C G A T C A G T C T G A T G C A A C T G G T C A G A T C A T G C G T C A G A T C G A T C G C T A A C G T C A G T C T G A A G C T