Information for 5-CGTTTGTACC (Motif 21)

A G T C A C T G A C G T A C G T A C G T A C T G A C G T C G T A A G T C A G T C
Reverse Opposite:
A C T G A C T G A C G T C G T A A G T C C G T A C G T A C G T A A G T C A C T G
p-value:1e-3
log p-value:-8.932e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets29.0 +/- 0.0bp
Average Position of motif in Background97.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CGTTTGTACC
YCTTTGTTCC
A G T C A C T G A C G T A C G T A C G T A C T G A C G T C G T A A G T C A G T C
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

HNF4A(var.2)/MA1494.1/Jaspar

Match Rank:2
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CGTTTGTACC-
NTGACCTTTGGACCC
A C G T A C G T A C G T A C G T A G T C A C T G A C G T A C G T A C G T A C T G A C G T C G T A A G T C A G T C A C G T
C A T G G A C T T C A G T G C A G T A C G T A C A G C T G C A T A G C T C T A G C T A G G T C A G T A C A G T C A G T C

Sox3/MA0514.1/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CGTTTGTACC
CCTTTGTTTT
A G T C A C T G A C G T A C G T A C G T A C T G A C G T C G T A A G T C A G T C
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CGTTTGTACC
CCATTGTTNY
A G T C A C T G A C G T A C G T A C G T A C T G A C G T C G T A A G T C A G T C
A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

SOX4/MA0867.2/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CGTTTGTACC
NCCTTTGTTC-
A C G T A G T C A C T G A C G T A C G T A C G T A C T G A C G T C G T A A G T C A G T C
A G T C A G T C G A T C C G A T A G C T A G C T T A C G C G A T A G C T G A T C A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CGTTTGTACC---
NNGCGTGTGTGCNGCN
A C G T A C G T A C G T A G T C A C T G A C G T A C G T A C G T A C T G A C G T C G T A A G T C A G T C A C G T A C G T A C G T
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CGTTTGTACC
CCWTTGTY--
A G T C A C T G A C G T A C G T A C G T A C T G A C G T C G T A A G T C A G T C
A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T

Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CGTTTGTACC-
BCCWTTGTBYKV
A C G T A G T C A C T G A C G T A C G T A C G T A C T G A C G T C G T A A G T C A G T C A C G T
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A T G C G A C T A C T G T A C G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CGTTTGTACC
CCWTTGTYYB
A G T C A C T G A C G T A C G T A C G T A C T G A C G T C G T A A G T C A G T C
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CGTTTGTACC
NCCATTGTTC-
A C G T A G T C A C T G A C G T A C G T A C G T A C T G A C G T C G T A A G T C A G T C
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T