Information for 4-AGTGATGGAGAG (Motif 7)

G T C A C A T G C A G T T A C G C G T A A C G T A C T G C T A G C G T A C T A G C G T A A C T G
Reverse Opposite:
A G T C A C G T A G T C A C G T A G T C A G T C G T C A A C G T A G T C G T C A G T A C A C G T
p-value:1e-7
log p-value:-1.725e+01
Information Content per bp:1.875
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif5.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets124.0 +/- 44.5bp
Average Position of motif in Background66.0 +/- 42.4bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0139.1_Irf5_2/Jaspar

Match Rank:1
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AGTGATGGAGAG----
-TTGACCGAGAATTCC
G T C A C A T G C A G T T A C G C G T A A C G T A C T G C T A G C G T A C T A G C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AGTGATGGAGAG-
-NTGATTGACAGN
G T C A C A T G C A G T T A C G C G T A A C G T A C T G C T A G C G T A C T A G C G T A A C T G A C G T
A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:3
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AGTGATGGAGAG
--TGATKGATGR
G T C A C A T G C A G T T A C G C G T A A C G T A C T G C T A G C G T A C T A G C G T A A C T G
A C G T A C G T C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:4
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:AGTGATGGAGAG-
---AATGGAAAAT
G T C A C A T G C A G T T A C G C G T A A C G T A C T G C T A G C G T A C T A G C G T A A C T G A C G T
A C G T A C G T A C G T T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:5
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:AGTGATGGAGAG--
--TGAGTGACAGSC
G T C A C A T G C A G T T A C G C G T A A C G T A C T G C T A G C G T A C T A G C G T A A C T G A C G T A C G T
A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

PB0140.1_Irf6_2/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGTGATGGAGAG----
-NNNACCGAGAGTNNN
G T C A C A T G C A G T T A C G C G T A A C G T A C T G C T A G C G T A C T A G C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.57
Offset:4
Orientation:forward strand
Alignment:AGTGATGGAGAG--
----BTBRAGTGSN
G T C A C A T G C A G T T A C G C G T A A C G T A C T G C T A G C G T A C T A G C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AGTGATGGAGAG-
-BTGABTGACAGS
G T C A C A T G C A G T T A C G C G T A A C G T A C T G C T A G C G T A C T A G C G T A A C T G A C G T
A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

PH0134.1_Pbx1/Jaspar

Match Rank:9
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----AGTGATGGAGAG
NNNNNATTGATGNGTGN
A C G T A C G T A C G T A C G T A C G T G T C A C A T G C A G T T A C G C G T A A C G T A C T G C T A G C G T A C T A G C G T A A C T G
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

NFATC4/MA1525.1/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:forward strand
Alignment:AGTGATGGAGAG-
---AATGGAAAAT
G T C A C A T G C A G T T A C G C G T A A C G T A C T G C T A G C G T A C T A G C G T A A C T G A C G T
A C G T A C G T A C G T T C G A C T G A G A C T A C T G A C T G G T C A C G T A G T C A T G C A G C A T