Information for 18-AAAGTATAAGAA (Motif 22)

C G T A C G T A C G T A A C T G A C G T C G T A A C G T C G T A C G T A A C T G C G T A C G T A
Reverse Opposite:
A C G T A C G T A G T C A C G T A C G T C G T A A C G T C G T A A G T C A C G T A C G T A C G T
p-value:1e-3
log p-value:-8.428e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets6.0 +/- 0.0bp
Average Position of motif in Background116.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TBP/MA0108.2/Jaspar

Match Rank:1
Score:0.59
Offset:3
Orientation:forward strand
Alignment:AAAGTATAAGAA------
---GTATAAAAGGCGGGG
C G T A C G T A C G T A A C T G A C G T C G T A A C G T C G T A C G T A A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

PB0123.1_Foxl1_2/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AAAGTATAAGAA----
ATATCAAAACAAAACA
C G T A C G T A C G T A A C T G A C G T C G T A A C G T C G T A C G T A A C T G C G T A C G T A A C G T A C G T A C G T A C G T
G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

PB0079.1_Sry_1/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AAAGTATAAGAA--
TATAATTATAATATTC
A C G T A C G T C G T A C G T A C G T A A C T G A C G T C G T A A C G T C G T A C G T A A C T G C G T A C G T A A C G T A C G T
A C G T G C T A C A G T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C T G A C G A T C A G T T G A C

POL012.1_TATA-Box/Jaspar

Match Rank:4
Score:0.58
Offset:3
Orientation:forward strand
Alignment:AAAGTATAAGAA------
---GTATAAAAGGCGGGG
C G T A C G T A C G T A A C T G A C G T C G T A A C G T C G T A C G T A A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

PB0064.1_Sox14_1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AAAGTATAAGAA--
GCTAATTATAATTATC
A C G T A C G T C G T A C G T A C G T A A C T G A C G T C G T A A C G T C G T A C G T A A C T G C G T A C G T A A C G T A C G T
C A T G G A T C G A C T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C A G T G T A C

PB0021.1_Gata3_1/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----AAAGTATAAGAA------
TTTTTAGAGATAAGAAATAAAG
A C G T A C G T A C G T A C G T C G T A C G T A C G T A A C T G A C G T C G T A A C G T C G T A C G T A A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A G T G C A T C A G T C G A T C T G A C A T G G C T A A C T G C G T A C G A T G C T A C G T A T A C G T G C A C T G A G C T A A C G T C G T A G T C A T C G A C A T G

IRF1/MA0050.2/Jaspar

Match Rank:7
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------AAAGTATAAGAA---
AAANNGAAAGTGAAAGTAAAN
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G T A A C T G A C G T C G T A A C G T C G T A C G T A A C T G C G T A C G T A A C G T A C G T A C G T
C T G A C G T A C T G A T C A G G C A T T C A G C T G A C T G A C G T A T A C G G A C T C T A G T C G A C T G A C G T A T A C G G A C T T C G A T C G A C T G A C T G A

PB0174.1_Sox30_2/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AAAGTATAAGAA--
TAAGATTATAATACGG
A C G T A C G T C G T A C G T A C G T A A C T G A C G T C G T A A C G T C G T A C G T A A C T G C G T A C G T A A C G T A C G T
G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AAAGTATAAGAA
GAAAGTGAAAGT-
A C G T C G T A C G T A C G T A A C T G A C G T C G T A A C G T C G T A C G T A A C T G C G T A C G T A
T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T A C G T

GATA6/MA1104.2/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AAAGTATAAGAA--
-NNAGATAAGATAN
C G T A C G T A C G T A A C T G A C G T C G T A A C G T C G T A C G T A A C T G C G T A C G T A A C G T A C G T
A C G T C G T A C T G A C G T A C T A G C G T A G C A T C G T A C G T A T A C G T C G A C G A T C G T A C G T A