Information for 2-GCTCTGTCGA (Motif 5)

A C T G A G T C A C G T A G T C A C G T A C T G A C G T A G T C A C T G C G T A
Reverse Opposite:
A C G T A G T C A C T G C G T A A G T C C G T A A C T G C G T A A C T G A G T C
p-value:1e-11
log p-value:-2.609e+01
Information Content per bp:1.530
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets110.8 +/- 39.2bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEIS2/MA0774.1/Jaspar

Match Rank:1
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GCTCTGTCGA
--GCTGTCAA
A C T G A G T C A C G T A G T C A C G T A C T G A C G T A G T C A C T G C G T A
A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

MEIS3/MA0775.1/Jaspar

Match Rank:2
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GCTCTGTCGA
--CCTGTCAA
A C T G A G T C A C G T A G T C A C G T A C T G A C G T A G T C A C T G C G T A
A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A

MEIS1/MA0498.2/Jaspar

Match Rank:3
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GCTCTGTCGA
---NTGTCAN
A C T G A G T C A C G T A G T C A C G T A C T G A C G T A G T C A C T G C G T A
A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A

POL013.1_MED-1/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GCTCTGTCGA
GCTCCG----
A C T G A G T C A C G T A G T C A C G T A C T G A C G T A G T C A C T G C G T A
A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCTCTGTCGA
--GCTGTG--
A C T G A G T C A C G T A G T C A C G T A C T G A C G T A G T C A C T G C G T A
A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GCTCTGTCGA
NGCTN------
A C G T A C T G A G T C A C G T A G T C A C G T A C T G A C G T A G T C A C T G C G T A
T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

SOX10/MA0442.2/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCTCTGTCGA
NNCTTTGTTNN
A C G T A C T G A G T C A C G T A G T C A C G T A C T G A C G T A G T C A C T G C G T A
A C G T A G C T T G A C C G A T C G A T C G A T T C A G C G A T A C G T G A C T G A C T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:8
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----GCTCTGTCGA
AGGVNCCTTTGT---
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A C G T A C T G A C G T A G T C A C T G C G T A
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T A C G T

PH0140.1_Pknox1/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GCTCTGTCGA---
AAAGACCTGTCAATCC
A C G T A C G T A C G T A C T G A G T C A C G T A G T C A C G T A C T G A C G T A G T C A C T G C G T A A C G T A C G T A C G T
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C

ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GCTCTGTCGA----
GGNTCTCGCGAGAAC
A C G T A C T G A G T C A C G T A G T C A C G T A C T G A C G T A G T C A C T G C G T A A C G T A C G T A C G T A C G T
T A C G T C A G T G C A A G C T T G A C A G C T A G T C A C T G G A T C A C T G T C G A A C T G C T G A C T G A A T G C