Information for 11-AAAACCCTAAAA (Motif 15)

T G C A C T G A T C G A C G T A G T A C A G T C G T A C A C G T C G T A C G T A C G T A C G T A
Reverse Opposite:
C G A T C G A T A C G T G C A T C G T A A C T G C T A G A C T G C G A T A C G T A G C T A C G T
p-value:1e-9
log p-value:-2.178e+01
Information Content per bp:1.877
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.98%
Number of Background Sequences with motif21.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets108.0 +/- 49.9bp
Average Position of motif in Background99.1 +/- 45.2bp
Strand Bias (log2 ratio + to - strand density)3.4
Multiplicity (# of sites on avg that occur together)2.56
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0064.1_Hoxb9/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AAAACCCTAAAA----
AGAGCCATAAAATTCG
T G C A C T G A T C G A C G T A G T A C A G T C G T A C A C G T C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:2
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AAAACCCTAAAA
--VGCCATAAAA
T G C A C T G A T C G A C G T A G T A C A G T C G T A C A C G T C G T A C G T A C G T A C G T A
A C G T A C G T T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:3
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AAAACCCTAAAA--
--NGYCATAAAWCH
T G C A C T G A T C G A C G T A G T A C A G T C G T A C A C G T C G T A C G T A C G T A C G T A A C G T A C G T
A C G T A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:AAAACCCTAAAA
--KGCCATAAAA
T G C A C T G A T C G A C G T A G T A C A G T C G T A C A C G T C G T A C G T A C G T A C G T A
A C G T A C G T C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A

ZSCAN4/MA1155.1/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AAAACCCTAAAA-
TGCACACACTGAAAA
A C G T A C G T T G C A C T G A T C G A C G T A G T A C A G T C G T A C A C G T C G T A C G T A C G T A C G T A A C G T
G A C T T C A G A T G C C G T A A G T C C G T A G A T C T G C A G T A C A C G T A C T G C G T A G T C A C T G A C T G A

Nkx3-2/MA0122.3/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AAAACCCTAAAA
ATAACCACTTAAA
A C G T T G C A C T G A T C G A C G T A G T A C A G T C G T A C A C G T C G T A C G T A C G T A C G T A
C G T A C G A T C G T A C G T A T G A C G A T C G C T A G T A C G C A T G A C T G C T A C G T A G C T A

HOXB13/MA0901.2/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AAAACCCTAAAA---
-AACCAATAAAATTT
T G C A C T G A T C G A C G T A G T A C A G T C G T A C A C G T C G T A C G T A C G T A C G T A A C G T A C G T A C G T
A C G T C G T A C G T A G T A C G A T C G C T A C G T A A C G T C G T A G C T A G C T A G C T A G C A T G C A T G C A T

PH0047.1_Hoxa11/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AAAACCCTAAAA---
TAAAGTCGTAAAACAT
A C G T T G C A C T G A T C G A C G T A G T A C A G T C G T A C A C G T C G T A C G T A C G T A C G T A A C G T A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

PB0046.1_Mybl1_1/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---AAAACCCTAAAA--
TTGAAAACCGTTAATTT
A C G T A C G T A C G T T G C A C T G A T C G A C G T A G T A C A G T C G T A C A C G T C G T A C G T A C G T A C G T A A C G T A C G T
G A C T C G A T C A T G C G T A G C T A C T G A C T G A G T A C A T G C A C T G A C G T G A C T C T G A G C T A G C A T G A C T C G A T

PB0141.1_Isgf3g_2/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AAAACCCTAAAA
GCAAAACATTACTA
A C G T A C G T T G C A C T G A T C G A C G T A G T A C A G T C G T A C A C G T C G T A C G T A C G T A C G T A
A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A