Information for 6-AAGAACTAAATT (Motif 7)

G T C A C G T A A T C G C T G A C G T A A T G C A G C T C T G A C G T A G C T A C G A T C G A T
Reverse Opposite:
G C T A C G T A C G A T A C G T A G C T C T G A A T C G C G A T A G C T A T G C G A C T A C G T
p-value:1e-10
log p-value:-2.442e+01
Information Content per bp:1.754
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.19%
Number of Background Sequences with motif159.3
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets79.7 +/- 44.1bp
Average Position of motif in Background111.9 +/- 52.2bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0117.1_Nkx3-1/Jaspar

Match Rank:1
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----AAGAACTAAATT-
TACTAAGTACTTAAATG
A C G T A C G T A C G T A C G T G T C A C G T A A T C G C T G A C G T A A T G C A G C T C T G A C G T A G C T A C G A T C G A T A C G T
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AAGAACTAAATT
AAGCACTTAA--
G T C A C G T A A T C G C T G A C G T A A T G C A G C T C T G A C G T A G C T A C G A T C G A T
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T

PB0171.1_Sox18_2/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AAGAACTAAATT------
--GGACTGAATTCATGCC
G T C A C G T A A T C G C T G A C G T A A T G C A G C T C T G A C G T A G C T A C G A T C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G A C T G C T G A A T G C A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A C G A T C T A G G T A C T G A C

PH0112.1_Nkx2-3/Jaspar

Match Rank:4
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----AAGAACTAAATT
CTTTAAGTACTTAATG
A C G T A C G T A C G T A C G T G T C A C G T A A T C G C T G A C G T A A T G C A G C T C T G A C G T A G C T A C G A T C G A T
G A T C A G C T A G C T G C A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C T G A G A C T C T A G

PH0116.1_Nkx2-9/Jaspar

Match Rank:5
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----AAGAACTAAATT-
TTTTAAGTACTTAAATT
A C G T A C G T A C G T A C G T G T C A C G T A A T C G C T G A C G T A A T G C A G C T C T G A C G T A G C T A C G A T C G A T A C G T
C G A T G A C T G C A T C G A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C G T A G C T A C G A T G A C T

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AAGAACTAAATT
HDGYAATGAAAN
G T C A C G T A A T C G C T G A C G T A A T G C A G C T C T G A C G T A G C T A C G A T C G A T
G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A

PB0068.1_Sox1_1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AAGAACTAAATT----
NNNTATTGAATTGNNN
G T C A C G T A A T C G C T G A C G T A A T G C A G C T C T G A C G T A G C T A C G A T C G A T A C G T A C G T A C G T A C G T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

NR1I3/MA1534.1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AAGAACTAAATT
ATGAACTTT---
G T C A C G T A A T C G C T G A C G T A A T G C A G C T C T G A C G T A G C T A C G A T C G A T
C T G A G A C T T C A G G T C A G T C A A G T C A G C T G A C T G C A T A C G T A C G T A C G T

ZNF274/MA1592.1/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---AAGAACTAAATT-
NNCGAGAACTCATACN
A C G T A C G T A C G T G T C A C G T A A T C G C T G A C G T A A T G C A G C T C T G A C G T A G C T A C G A T C G A T A C G T
G T C A T C A G G A T C C T A G C G T A C A T G C T G A G T C A A T G C G A C T A G T C T G C A G A C T T C G A A G T C G A T C

PB0096.1_Zfp187_1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AAGAACTAAATT
TTATGTACTAATAA
A C G T A C G T G T C A C G T A A T C G C T G A C G T A A T G C A G C T C T G A C G T A G C T A C G A T C G A T
A G C T G A C T T C G A G A C T C T A G C G A T C T G A A G T C A G C T G C T A C G T A C G A T C G T A G T C A