Information for 3-GAGTTTCCATCC (Motif 5)

A C T G C G T A A C T G A C G T A C G T A C G T A G T C A G T C C G T A A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A A C G T A C T G A C T G C G T A C G T A C G T A A G T C A C G T A G T C
p-value:1e-13
log p-value:-3.032e+01
Information Content per bp:1.530
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.4 +/- 19.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFATC4/MA1525.1/Jaspar

Match Rank:1
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:GAGTTTCCATCC
-ATTTTCCATN-
A C T G C G T A A C T G A C G T A C G T A C G T A G T C A G T C C G T A A C G T A G T C A G T C
A C G T C G T A A C G T C A G T A C G T A C G T A G T C A G T C C T G A G A C T A G C T A C G T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:2
Score:0.75
Offset:1
Orientation:forward strand
Alignment:GAGTTTCCATCC
-ATTTTCCATT-
A C T G C G T A A C T G A C G T A C G T A C G T A G T C A G T C C G T A A C G T A G T C A G T C
A C G T C G T A A C G T A C G T A C G T A C G T A G T C A G T C C T G A A G C T A G C T A C G T

NFATC3/MA0625.1/Jaspar

Match Rank:3
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GAGTTTCCATCC
-ATTTTCCATT-
A C T G C G T A A C T G A C G T A C G T A C G T A G T C A G T C C G T A A C G T A G T C A G T C
A C G T C G T A G A C T C G A T G C A T A G C T G T A C A T G C C T G A G A C T G C A T A C G T

NFAT5/MA0606.1/Jaspar

Match Rank:4
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GAGTTTCCATCC
-ATTTTCCATT-
A C T G C G T A A C T G A C G T A C G T A C G T A G T C A G T C C G T A A C G T A G T C A G T C
A C G T C G T A C G A T A C G T A C G T G C A T A G T C A G T C G C T A G A C T C G A T A C G T

NFATC1/MA0624.1/Jaspar

Match Rank:5
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GAGTTTCCATCC
-ATTTTCCATT-
A C T G C G T A A C T G A C G T A C G T A C G T A G T C A G T C C G T A A C G T A G T C A G T C
A C G T C G T A G C A T C G A T G A C T G A C T T G A C G A T C C T G A G A C T G C A T A C G T

RELA/MA0107.1/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GAGTTTCCATCC
GGGAATTTCC----
A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C G T A G T C A G T C C G T A A C G T A G T C A G T C
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T

PB0033.1_Irf3_1/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GAGTTTCCATCC--
CAGTTTCGNTTCTN
A C T G C G T A A C T G A C G T A C G T A C G T A G T C A G T C C G T A A C G T A G T C A G T C A C G T A C G T
A G T C C T G A A T C G C A G T C G A T A C G T A G T C A T C G C A T G C G A T G C A T G A T C G A C T T A G C

NFATC2/MA0152.1/Jaspar

Match Rank:8
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GAGTTTCCATCC
--TTTTCCA---
A C T G C G T A A C T G A C G T A C G T A C G T A G T C A G T C C G T A A C G T A G T C A G T C
A C G T A C G T C G A T A C G T G A C T A C G T G T A C A G T C G C T A A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GAGTTTCCATCC
GGGAATTTCC----
A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C G T A G T C A G T C C G T A A C G T A G T C A G T C
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T A C G T A C G T

IRF6/MA1509.1/Jaspar

Match Rank:10
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GAGTTTCCATCC
-AGTTTCGGT--
A C T G C G T A A C T G A C G T A C G T A C G T A G T C A G T C C G T A A C G T A G T C A G T C
A C G T C T G A A T C G G A C T G C A T C G A T G A T C T A C G C T A G A G C T A C G T A C G T