Information for 13-GACAGCAATC (Motif 22)

A C T G C G T A A G T C C G T A A C T G A G T C C G T A C G T A A C G T A G T C
Reverse Opposite:
A C T G C G T A A C G T A C G T A C T G A G T C A C G T A C T G A C G T A G T C
p-value:1e-7
log p-value:-1.743e+01
Information Content per bp:1.530
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif17.1
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets126.3 +/- 26.0bp
Average Position of motif in Background96.3 +/- 52.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEIS1(var.2)/MA1639.1/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GACAGCAATC---
GTCATCAATCATT
A C T G C G T A A G T C C G T A A C T G A G T C C G T A C G T A A C G T A G T C A C G T A C G T A C G T
C T A G G A C T G A T C C T G A C A G T G T A C G T C A G C T A G C A T G T A C G C T A G C A T G C A T

PBX1/MA0070.1/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GACAGCAATC---
-CCATCAATCAAA
A C T G C G T A A G T C C G T A A C T G A G T C C G T A C G T A A C G T A G T C A C G T A C G T A C G T
A C G T G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

MEIS2/MA0774.1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GACAGCAATC
TTGACAGC----
A C G T A C G T A C T G C G T A A G T C C G T A A C T G A G T C C G T A C G T A A C G T A G T C
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T

TGIF1/MA0796.1/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GACAGCAATC-
TGACAGCTGTCA
A C G T A C T G C G T A A G T C C G T A A C T G A G T C C G T A C G T A A C G T A G T C A C G T
G C A T T C A G T C G A A G T C T C G A A C T G T A G C A G C T T A C G G C A T G T A C C G T A

PB0144.1_Lef1_2/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GACAGCAATC-----
GAAGATCAATCACTTA
A C G T A C T G C G T A A G T C C G T A A C T G A G T C C G T A C G T A A C G T A G T C A C G T A C G T A C G T A C G T A C G T
T A C G C G T A T C G A T A C G G C T A C G A T A G T C C G T A C T G A C A G T G A T C C T G A G T A C A G C T G C A T C G T A

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GACAGCAATC-----
GAAGATCAATCACTAA
A C G T A C T G C G T A A G T C C G T A A C T G A G T C C G T A C G T A A C G T A G T C A C G T A C G T A C G T A C G T A C G T
T A C G C T A G T C G A T A C G G C T A G C A T A G T C C G T A C T G A C A G T G A T C C T G A A T G C A C G T G C T A C G T A

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GACAGCAATC
CACAGN----
A C T G C G T A A G T C C G T A A C T G A G T C C G T A C G T A A C G T A G T C
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GACAGCAATC--
GYCATCMATCAT
A C T G C G T A A G T C C G T A A C T G A G T C C G T A C G T A A C G T A G T C A C G T A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

Dux/MA0611.1/Jaspar

Match Rank:9
Score:0.63
Offset:4
Orientation:forward strand
Alignment:GACAGCAATC--
----CCAATCAA
A C T G C G T A A G T C C G T A A C T G A G T C C G T A C G T A A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

MEIS3/MA0775.1/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GACAGCAATC
TTGACAGG----
A C G T A C G T A C T G C G T A A G T C C G T A A C T G A G T C C G T A C G T A A C G T A G T C
C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T A C G T A C G T