Information for 3-STTTAACASCKG (Motif 3)

A T G C C G A T A C G T A C G T T G C A G C T A G T A C T C G A T A C G A T G C C A G T T A C G
Reverse Opposite:
A G T C G T C A T A C G A T G C A C G T A C T G C A G T A C G T T C G A C G T A C G T A T A C G
p-value:1e-6
log p-value:-1.470e+01
Information Content per bp:1.600
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif41.18%
Number of Background Sequences with motif1486.2
Percentage of Background Sequences with motif3.11%
Average Position of motif in Targets56.8 +/- 34.4bp
Average Position of motif in Background100.6 +/- 60.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer

Match Rank:1
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:STTTAACASCKG
-TTTCACACCT-
A T G C C G A T A C G T A C G T T G C A G C T A G T A C T C G A T A C G A T G C C A G T T A C G
A C G T A C G T G C A T G A C T T A G C C G T A G A T C C G T A T G A C G A T C G A C T A C G T

TBR1/MA0802.1/Jaspar

Match Rank:2
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:STTTAACASCKG
-TTTCACACCT-
A T G C C G A T A C G T A C G T T G C A G C T A G T A C T C G A T A C G A T G C C A G T T A C G
A C G T C G A T C G A T G A C T T G A C C T G A T A G C T C G A T A G C G A T C G A C T A C G T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:3
Score:0.70
Offset:1
Orientation:forward strand
Alignment:STTTAACASCKG
-ATTAACACCT-
A T G C C G A T A C G T A C G T T G C A G C T A G T A C T C G A T A C G A T G C C A G T T A C G
A C G T G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T A C G T

Rhox11/MA0629.1/Jaspar

Match Rank:4
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--STTTAACASCKG---
TCNNTTTACAGCGNNNT
A C G T A C G T A T G C C G A T A C G T A C G T T G C A G C T A G T A C T C G A T A C G A T G C C A G T T A C G A C G T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

PH0157.1_Rhox11_1/Jaspar

Match Rank:5
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--STTTAACASCKG---
TCNNTTTACAGCGNNNT
A C G T A C G T A T G C C G A T A C G T A C G T T G C A G C T A G T A C T C G A T A C G A T G C C A G T T A C G A C G T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

TBX2/MA0688.1/Jaspar

Match Rank:6
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:STTTAACASCKG
-TTTCACACCTN
A T G C C G A T A C G T A C G T T G C A G C T A G T A C T C G A T A C G A T G C C A G T T A C G
A C G T G C A T G C A T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T G C A T

PB0013.1_Eomes_1/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--STTTAACASCKG---
NNTTTTCACACCTTNNN
A C G T A C G T A T G C C G A T A C G T A C G T T G C A G C T A G T A C T C G A T A C G A T G C C A G T T A C G A C G T A C G T A C G T
C T G A C T G A C G A T C A G T C A G T A G C T T G A C C T G A A G T C C T G A T A G C G A T C G A C T G A C T C G A T A G C T T G A C

PH0158.1_Rhox11_2/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--STTTAACASCKG---
TCNCTTTACAGCGNNNT
A C G T A C G T A T G C C G A T A C G T A C G T T G C A G C T A G T A C T C G A T A C G A T G C C A G T T A C G A C G T A C G T A C G T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:9
Score:0.66
Offset:3
Orientation:forward strand
Alignment:STTTAACASCKG-
---BAACAGCTGT
A T G C C G A T A C G T A C G T T G C A G C T A G T A C T C G A T A C G A T G C C A G T T A C G A C G T
A C G T A C G T A C G T A C G T T C G A T C G A A G T C G T C A T A C G A T G C A C G T A C T G A G C T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:10
Score:0.65
Offset:3
Orientation:forward strand
Alignment:STTTAACASCKG-
---NAACAGCTGG
A T G C C G A T A C G T A C G T T G C A G C T A G T A C T C G A T A C G A T G C C A G T T A C G A C G T
A C G T A C G T A C G T C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G