Information for 4-CCWMMCASTSRK (Motif 5)

A G T C A G T C G C T A G T C A G T A C A G T C G T C A A T G C A C G T A T C G C T A G A C G T
Reverse Opposite:
G T C A G A T C A T G C C G T A A T C G A C G T A C T G A C T G A C G T C G A T A C T G A C T G
p-value:1e-6
log p-value:-1.432e+01
Information Content per bp:1.774
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif31.25%
Number of Background Sequences with motif693.8
Percentage of Background Sequences with motif1.09%
Average Position of motif in Targets62.8 +/- 34.6bp
Average Position of motif in Background98.5 +/- 70.1bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer

Match Rank:1
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CCWMMCASTSRK
AGACCACCCASR---
A C G T A C G T A C G T A G T C A G T C G C T A G T C A G T A C A G T C G T C A A T G C A C G T A T C G C T A G A C G T
C T G A A C T G T C G A T G A C G A T C G C T A T A G C T G A C G T A C C G T A T A G C T C A G A C G T A C G T A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:2
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCWMMCASTSRK
GGACCACCCACG---
A C G T A C G T A C G T A G T C A G T C G C T A G T C A G T A C A G T C G T C A A T G C A C G T A T C G C T A G A C G T
C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G A C G T A C G T A C G T

GLI3/MA1491.1/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CCWMMCASTSRK
AGACCACCCACGTCG
A C G T A C G T A C G T A G T C A G T C G C T A G T C A G T A C A G T C G T C A A T G C A C G T A T C G C T A G A C G T
T G C A A C T G T G C A T G A C T G A C G T C A T A G C G T A C G T A C C T G A G T A C T A C G C G A T G A T C A T C G

GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCWMMCASTSRK
NGGCCTCCCAGGGAG
A C G T A C G T A C G T A G T C A G T C G C T A G T C A G T A C A G T C G T C A A T G C A C G T A T C G C T A G A C G T
G C T A A C T G T C A G G A T C A G T C G A C T A G T C G T A C G A T C C T G A T A C G C T A G T C A G C G T A A T C G

PB0195.1_Zbtb3_2/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCWMMCASTSRK--
NNNNTGCCAGTGATTG
A C G T A C G T A G T C A G T C G C T A G T C A G T A C A G T C G T C A A T G C A C G T A T C G C T A G A C G T A C G T A C G T
G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CCWMMCASTSRK
YCCGCCCACGCN-
A C G T A G T C A G T C G C T A G T C A G T A C A G T C G T C A A T G C A C G T A T C G C T A G A C G T
G A T C G T A C G A T C C T A G A G T C A G T C A G T C G T C A A G T C C T A G A T G C T C G A A C G T

SOX12/MA1561.1/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCWMMCASTSRK
ACCGAACAATG--
A C G T A G T C A G T C G C T A G T C A G T A C A G T C G T C A A T G C A C G T A T C G C T A G A C G T
G T C A G T A C G A T C C A T G T G C A T C G A A G T C C G T A T G C A G A C T T A C G A C G T A C G T

NFYC/MA1644.1/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCWMMCASTSRK
AGCCAATCAGA---
A C G T A C G T A G T C A G T C G C T A G T C A G T A C A G T C G T C A A T G C A C G T A T C G C T A G A C G T
T C G A C T A G A G T C G T A C G C T A T C G A G A C T T A G C T C G A T A C G T G C A A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCWMMCASTSRK
--MRSCACTYAA
A G T C A G T C G C T A G T C A G T A C A G T C G T C A A T G C A C G T A T C G C T A G A C G T
A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

GLI2/MA0734.2/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CCWMMCASTSRK
AGACCACCCACGTCG
A C G T A C G T A C G T A G T C A G T C G C T A G T C A G T A C A G T C G T C A A T G C A C G T A T C G C T A G A C G T
T G C A A C T G T G C A A G T C A G T C G T C A A G T C G T A C G T A C C T G A G T A C T A C G C G A T G A T C A T C G