Information for 19-GGGTACAGAT (Motif 40)

A C T G C T A G C T A G A C G T C G T A A G T C C G T A A C T G C G T A A C G T
Reverse Opposite:
C G T A A C G T A G T C A C G T A C T G A C G T C G T A A G T C A G T C A G T C
p-value:1e-3
log p-value:-7.966e+00
Information Content per bp:1.956
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif47.8
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets114.3 +/- 54.6bp
Average Position of motif in Background93.8 +/- 58.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)2.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ptf1a/MA1618.1/Jaspar

Match Rank:1
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GGGTACAGAT-----
--AAACAGATGTTTA
A C T G C T A G C T A G A C G T C G T A A G T C C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A T G C A T G C A G A T C T C G A A C T G T G C A G A C T C T A G A C G T A G C T A C G T G T C A

NEUROG2(var.2)/MA1642.1/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GGGTACAGAT----
-GGAACAGATGGCA
A C T G C T A G C T A G A C G T C G T A A G T C C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C T A G C T A G T C G A T G C A T A G C T C G A A C T G T G C A G A C T C A T G A C T G A G T C T G C A

HAND2/MA1638.1/Jaspar

Match Rank:3
Score:0.66
Offset:3
Orientation:forward strand
Alignment:GGGTACAGAT---
---ACCAGATGGC
A C T G C T A G C T A G A C G T C G T A A G T C C G T A A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A T G A C A T G C T C G A A C T G T C G A A G C T T C A G A C T G G A T C

NEUROD1/MA1109.1/Jaspar

Match Rank:4
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GGGTACAGAT-----
--GGACAGATGGCAG
A C T G C T A G C T A G A C G T C G T A A G T C C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G T C A G T C G A T G A C C G T A A C T G T G C A G C A T C A T G A C T G A G T C T C G A T A C G

PB0156.1_Plagl1_2/Jaspar

Match Rank:5
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------GGGTACAGAT-
GCTGGGGGGTACCCCTT
A C G T A C G T A C G T A C G T A C G T A C G T A C T G C T A G C T A G A C G T C G T A A G T C C G T A A C T G C G T A A C G T A C G T
C T A G A G T C G C A T C T A G C A T G A C T G C T A G A C T G A C T G A C G T C T G A G A T C G T A C G T A C G A T C G A C T C G A T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GGGTACAGAT
CCAGGAACAG--
A C G T A C G T A C T G C T A G C T A G A C G T C G T A A G T C C G T A A C T G C G T A A C G T
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:7
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GGGTACAGAT---
---AACAGATGGT
A C T G C T A G C T A G A C G T C G T A A G T C C G T A A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GGGTACAGAT-------
AAGGCCAGATGGTCCGG
A C T G C T A G C T A G A C G T C G T A A G T C C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G C T A T C G A C T A G C A T G T A G C G T A C C T G A A C T G T C G A C G A T A C T G C A T G A G C T G A T C A T G C A T C G T C A G

TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer

Match Rank:9
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GGGTACAGAT---
---DMCAGATGKS
A C T G C T A G C T A G A C G T C G T A A G T C C G T A A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A T G A C A G T C C G T A A C T G G T C A A C G T A C T G A C G T A T G C

TWIST1/MA1123.2/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GGGTACAGAT----
-ATTCCAGATGTTT
A C T G C T A G C T A G A C G T C G T A A G T C C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C G T A C G A T C G A T T G A C G T A C C G T A A C T G T G C A G A C T A C T G A C G T A G C T G C A T