Information for 10-AAAACCCTAAAA (Motif 12)

C T G A T G C A T G C A G C T A G T A C G T A C G A T C G C A T C G T A C T G A C T G A C T G A
Reverse Opposite:
G A C T G A C T G A C T G C A T C G T A C T A G C A T G C A T G C G A T A C G T A C G T G A C T
p-value:1e-11
log p-value:-2.762e+01
Information Content per bp:1.578
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.46%
Number of Background Sequences with motif51.7
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets105.9 +/- 57.5bp
Average Position of motif in Background104.2 +/- 50.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)2.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0064.1_Hoxb9/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AAAACCCTAAAA----
AGAGCCATAAAATTCG
C T G A T G C A T G C A G C T A G T A C G T A C G A T C G C A T C G T A C T G A C T G A C T G A A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:AAAACCCTAAAA--
--NGYCATAAAWCH
C T G A T G C A T G C A G C T A G T A C G T A C G A T C G C A T C G T A C T G A C T G A C T G A A C G T A C G T
A C G T A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.62
Offset:2
Orientation:forward strand
Alignment:AAAACCCTAAAA
--VGCCATAAAA
C T G A T G C A T G C A G C T A G T A C G T A C G A T C G C A T C G T A C T G A C T G A C T G A
A C G T A C G T T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A

Nkx3-2/MA0122.3/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AAAACCCTAAAA
ATAACCACTTAAA
A C G T C T G A T G C A T G C A G C T A G T A C G T A C G A T C G C A T C G T A C T G A C T G A C T G A
C G T A C G A T C G T A C G T A T G A C G A T C G C T A G T A C G C A T G A C T G C T A C G T A G C T A

HOXB13/MA0901.2/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AAAACCCTAAAA---
-AACCAATAAAATTT
C T G A T G C A T G C A G C T A G T A C G T A C G A T C G C A T C G T A C T G A C T G A C T G A A C G T A C G T A C G T
A C G T C G T A C G T A G T A C G A T C G C T A C G T A A C G T C G T A G C T A G C T A G C T A G C A T G C A T G C A T

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AAAACCCTAAAA
--KGCCATAAAA
C T G A T G C A T G C A G C T A G T A C G T A C G A T C G C A T C G T A C T G A C T G A C T G A
A C G T A C G T C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A

PH0057.1_Hoxb13/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AAAACCCTAAAA----
AACCCAATAAAATTCG
C T G A T G C A T G C A G C T A G T A C G T A C G A T C G C A T C G T A C T G A C T G A C T G A A C G T A C G T A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.58
Offset:3
Orientation:forward strand
Alignment:AAAACCCTAAAA-
---CYHATAAAAN
C T G A T G C A T G C A G C T A G T A C G T A C G A T C G C A T C G T A C T G A C T G A C T G A A C G T
A C G T A C G T A C G T T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C

PH0075.1_Hoxd10/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AAAACCCTAAAA-----
AATGCAATAAAATTTAT
C T G A T G C A T G C A G C T A G T A C G T A C G A T C G C A T C G T A C T G A C T G A C T G A A C G T A C G T A C G T A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

PH0078.1_Hoxd13/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AAAACCCTAAAA----
CTACCAATAAAATTCT
C T G A T G C A T G C A G C T A G T A C G T A C G A T C G C A T C G T A C T G A C T G A C T G A A C G T A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T