Information for 2-TGGCCTGCAGTA (Motif 4)

A C G T A C T G A C T G A T G C A G T C A C G T A C T G A G T C C G T A A C T G A C G T G T C A
Reverse Opposite:
C A G T C G T A A G T C A C G T A C T G A G T C C G T A A C T G A T C G A G T C A G T C C G T A
p-value:1e-11
log p-value:-2.662e+01
Information Content per bp:1.944
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets104.1 +/- 31.3bp
Average Position of motif in Background105.3 +/- 79.4bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TGGCCTGCAGTA-------
TGACCTAAAGTAACCTCTG
A C G T A C T G A C T G A T G C A G T C A C G T A C T G A G T C C G T A A C T G A C G T G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T T C A G G T C A G T A C G A T C A G C T T C G A C T G A C T G A C T A G C G A T C T G A T C G A G T A C G T A C A G C T A G T C C A G T A C T G

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGGCCTGCAGTA----
TGACCTNTAGTAACCC
A C G T A C T G A C T G A T G C A G T C A C G T A C T G A G T C C G T A A C T G A C G T G T C A A C G T A C G T A C G T A C G T
G A C T C T A G T G C A G T A C G A T C A G C T T A C G C A G T C T G A C T A G G C A T C T G A C T G A G T A C G T A C G A T C

PB0091.1_Zbtb3_1/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGGCCTGCAGTA-----
NNNANTGCAGTGCNNTT
A C G T A C T G A C T G A T G C A G T C A C G T A C T G A G T C C G T A A C T G A C G T G T C A A C G T A C G T A C G T A C G T A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TGGCCTGCAGTA
-NNCCTGCTGNG
A C G T A C T G A C T G A T G C A G T C A C G T A C T G A G T C C G T A A C T G A C G T G T C A
A C G T A G T C A T G C T G A C T A G C A G C T T C A G A T G C A C G T T C A G A G C T A T C G

Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TGGCCTGCAGTA
TYTGACCASWRG--
A C G T A C G T A C G T A C T G A C T G A T G C A G T C A C G T A C T G A G T C C G T A A C T G A C G T G T C A
G A C T A G T C C G A T A C T G C T G A T G A C G T A C C G T A A T C G G C A T C T G A C T A G A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:6
Score:0.55
Offset:-7
Orientation:forward strand
Alignment:-------TGGCCTGCAGTA
GGGGCCGAGGCCTG-----
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A T G C A G T C A C G T A C T G A G T C C G T A A C T G A C G T G T C A
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TGGCCTGCAGTA---
NNTCCTGCTGTGNNN
A C G T A C T G A C T G A T G C A G T C A C G T A C T G A G T C C G T A A C T G A C G T G T C A A C G T A C G T A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

PB0205.1_Zic1_2/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TGGCCTGCAGTA---
TNTCCTGCTGTGNNG
A C G T A C T G A C T G A T G C A G T C A C G T A C T G A G T C C G T A A C T G A C G T G T C A A C G T A C G T A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TGGCCTGCAGTA
AGGCCTNG----
A C G T A C T G A C T G A T G C A G T C A C G T A C T G A G T C C G T A A C T G A C G T G T C A
C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TGGCCTGCAGTA
AGGCCTAG----
A C G T A C T G A C T G A T G C A G T C A C G T A C T G A G T C C G T A A C T G A C G T G T C A
T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T A C G T