Information for 3-GGMKAMCMATRT (Motif 3)

A C T G A C T G G T A C A C G T C G T A G T C A A G T C G T A C C G T A A C G T C T A G A C G T
Reverse Opposite:
C G T A A G T C C G T A A C G T A C T G C T A G A C G T A C G T G T C A C A G T A G T C A G T C
p-value:1e-6
log p-value:-1.499e+01
Information Content per bp:1.831
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif21.43%
Number of Background Sequences with motif71.9
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets118.2 +/- 59.8bp
Average Position of motif in Background96.2 +/- 70.2bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX14/MA1562.1/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GGMKAMCMATRT
-CCGAACAATG-
A C T G A C T G G T A C A C G T C G T A G T C A A G T C G T A C C G T A A C G T C T A G A C G T
A C G T T G A C G A T C C A T G C G T A G C T A A G T C C G T A G T C A A C G T C A T G A C G T

Sox5/MA0087.1/Jaspar

Match Rank:2
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GGMKAMCMATRT
---NAACAAT--
A C T G A C T G G T A C A C G T C G T A G T C A A G T C G T A C C G T A A C G T C T A G A C G T
A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T

SOX8/MA0868.2/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GGMKAMCMATRT
--AGAACAATGG
A C T G A C T G G T A C A C G T C G T A G T C A A G T C G T A C C G T A A C G T C T A G A C G T
A C G T A C G T T G C A C T A G C T G A C G T A A G T C C G T A G T C A G C A T C T A G T A C G

SOX9/MA0077.1/Jaspar

Match Rank:4
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GGMKAMCMATRT
---GAACAATGG
A C T G A C T G G T A C A C G T C G T A G T C A A G T C G T A C C G T A A C G T C T A G A C G T
A C G T A C G T A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G

PB0065.1_Sox15_1/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GGMKAMCMATRT----
TAGTGAACAATAGATTT
A C G T A C T G A C T G G T A C A C G T C G T A G T C A A G T C G T A C C G T A A C G T C T A G A C G T A C G T A C G T A C G T A C G T
G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T

PB0063.1_Sox13_1/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GGMKAMCMATRT---
TTAAGAACAATAAATT
A C G T A C T G A C T G G T A C A C G T C G T A G T C A A G T C G T A C C G T A A C G T C T A G A C G T A C G T A C G T A C G T
C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T

PB0072.1_Sox5_1/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GGMKAMCMATRT---
TTTAGAACAATAAAAT
A C G T A C T G A C T G G T A C A C G T C G T A G T C A A G T C G T A C C G T A A C G T C T A G A C G T A C G T A C G T A C G T
C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T

SRY/MA0084.1/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GGMKAMCMATRT
-GTAAACAAT--
A C T G A C T G G T A C A C G T C G T A G T C A A G T C G T A C C G T A A C G T C T A G A C G T
A C G T A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T A C G T A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:9
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GGMKAMCMATRT
----AACAAT--
A C T G A C T G G T A C A C G T C G T A G T C A A G T C G T A C C G T A A C G T C T A G A C G T
A C G T A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GGMKAMCMATRT
--VRAACAATGG
A C T G A C T G G T A C A C G T C G T A G T C A A G T C G T A C C G T A A C G T C T A G A C G T
A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G