Information for 2-GGCTAATTCG (Motif 6)

A C T G A C T G A G T C A C G T C G T A C G T A A C G T A C G T A G T C A C T G
Reverse Opposite:
A G T C A C T G C G T A C G T A A C G T A C G T C G T A A C T G A G T C A G T C
p-value:1e-3
log p-value:-9.121e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets130.0 +/- 0.0bp
Average Position of motif in Background89.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX4/MA0068.2/Jaspar

Match Rank:1
Score:0.77
Offset:2
Orientation:reverse strand
Alignment:GGCTAATTCG
--CTAATTAG
A C T G A C T G A G T C A C G T C G T A C G T A A C G T A C G T A G T C A C T G
A C G T A C G T A G T C C A G T C G T A G T C A A C G T C G A T G T C A T C A G

PH0034.1_Gbx2/Jaspar

Match Rank:2
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---GGCTAATTCG----
AANCGCTAATTAGCNNN
A C G T A C G T A C G T A C T G A C T G A G T C A C G T C G T A C G T A A C G T A C G T A G T C A C T G A C G T A C G T A C G T A C G T
G T C A T G C A G A C T A T G C T C A G A T G C A G C T G T C A G C T A C A G T A C G T C T G A T A C G A G T C A C T G A T G C G C A T

GBX1/MA0889.1/Jaspar

Match Rank:3
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GGCTAATTCG-
-GCTAATTAGN
A C T G A C T G A G T C A C G T C G T A C G T A A C G T A C G T A G T C A C T G A C G T
A C G T T C A G A T G C C G A T C T G A C T G A A C G T A G C T C T G A T A C G A G C T

PH0098.1_Lhx8/Jaspar

Match Rank:4
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---GGCTAATTCG----
CACCGCTAATTAGNNGN
A C G T A C G T A C G T A C T G A C T G A G T C A C G T C G T A C G T A A C G T A C G T A G T C A C T G A C G T A C G T A C G T A C G T
G A T C T G C A G T A C G T A C T C A G T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A C T G A C T G A C T G C G A T

PH0131.1_Pax4/Jaspar

Match Rank:5
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---GGCTAATTCG----
NNGNGCTAATTAGNTNA
A C G T A C G T A C G T A C T G A C T G A G T C A C G T C G T A C G T A A C G T A C G T A G T C A C T G A C G T A C G T A C G T A C G T
C A T G G A C T A T C G T C A G C T A G A G T C C A G T C G T A C T G A A G C T G A C T G T C A C T A G G C A T A G C T A T G C C G T A

PH0089.1_Isx/Jaspar

Match Rank:6
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--GGCTAATTCG----
ACNNCTAATTAGNNNN
A C G T A C G T A C T G A C T G A G T C A C G T C G T A C G T A A C G T A C G T A G T C A C T G A C G T A C G T A C G T A C G T
G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T

LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer

Match Rank:7
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GGCTAATTCG
NGCTAATTAG
A C T G A C T G A G T C A C G T C G T A C G T A A C G T A C G T A G T C A C T G
A T G C T A C G A G T C G A C T T G C A C T G A G A C T A C G T C T G A T C A G

PH0032.1_Evx2/Jaspar

Match Rank:8
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---GGCTAATTCG----
CACCGCTAATTAGCGGT
A C G T A C G T A C G T A C T G A C T G A G T C A C G T C G T A C G T A A C G T A C G T A G T C A C T G A C G T A C G T A C G T A C G T
A G T C T G C A G A T C G T A C T C A G A T G C A G C T T G C A C G T A A C G T A C G T C T G A A T C G A T G C A C T G A C G T G C A T

LBX2/MA0699.1/Jaspar

Match Rank:9
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GGCTAATTCG-
-NNTAATTGGN
A C T G A C T G A G T C A C G T C G T A C G T A A C G T A C G T A G T C A C T G A C G T
A C G T A T C G G A T C G C A T T G C A T G C A A C G T A C G T C T A G T C A G A G T C

HESX1/MA0894.1/Jaspar

Match Rank:10
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GGCTAATTCG-
-GCTAATTGGC
A C T G A C T G A G T C A C G T C G T A C G T A A C G T A C G T A G T C A C T G A C G T
A C G T T C A G G A T C C G A T C T G A T C G A A C G T A G C T C T A G T C A G G A T C