Information for 4-AGTTATAACTGA (Motif 6)

C T G A C T A G A G C T C G A T C G T A C G A T G C T A C T G A G T A C C G A T C T A G G T C A
Reverse Opposite:
C A G T G A T C C G T A A C T G A G C T C G A T C G T A C G A T G C T A C T G A G A T C G A C T
p-value:1e-4
log p-value:-1.093e+01
Information Content per bp:1.681
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif36.36%
Number of Background Sequences with motif1137.9
Percentage of Background Sequences with motif1.56%
Average Position of motif in Targets70.7 +/- 44.8bp
Average Position of motif in Background98.8 +/- 75.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0062.1_Hoxb7/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--AGTTATAACTGA--
GTAGTAATTAATGCAA
A C G T A C G T C T G A C T A G A G C T C G A T C G T A C G A T G C T A C T G A G T A C C G A T C T A G G T C A A C G T A C G T
A T C G A G C T T G C A A C T G G A C T G T C A G C T A C G A T C A G T C T G A T G C A A C G T C A T G A T G C G C T A C T G A

PH0150.1_Pou4f3/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AGTTATAACTGA----
AGTTATTAATGAGGTC
C T G A C T A G A G C T C G A T C G T A C G A T G C T A C T G A G T A C C G A T C T A G G T C A A C G T A C G T A C G T A C G T
G C T A T C A G C A G T G C A T C G T A G A C T C G A T C G T A C G T A G A C T C A T G G T C A C T A G A C T G G A C T G A T C

PB0069.1_Sox21_1/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---AGTTATAACTGA-
TTTAATTATAATTAAG
A C G T A C G T A C G T C T G A C T A G A G C T C G A T C G T A C G A T G C T A C T G A G T A C C G A T C T A G G T C A A C G T
G A C T G C A T G A C T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C A T G

PB0064.1_Sox14_1/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---AGTTATAACTGA-
NNTAATTATAATTNNN
A C G T A C G T A C G T C T G A C T A G A G C T C G A T C G T A C G A T G C T A C T G A G T A C C G A T C T A G G T C A A C G T
C A T G G T C A G C A T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C T A G G T A C

PH0071.1_Hoxc6/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AGTTATAACTGA--
CAAATTAATTAATAAAA
A C G T A C G T A C G T C T G A C T A G A G C T C G A T C G T A C G A T G C T A C T G A G T A C C G A T C T A G G T C A A C G T A C G T
A G T C C T G A G C T A T C G A C A G T G A C T G C T A C G T A C G A T C G A T C T G A G T C A A C G T C G T A T C G A T G C A C G T A

PH0080.1_Hoxd8/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGTTATAACTGA---
TAAATAATTAATGGCTA
A C G T A C G T C T G A C T A G A G C T C G A T C G T A C G A T G C T A C T G A G T A C C G A T C T A G G T C A A C G T A C G T A C G T
C A G T G C T A C T G A C G A T G A C T G C T A C G T A C G A T G C A T C G T A G C T A G A C T C T A G C T A G G A T C C G A T G C T A

PH0019.1_Dbx2/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AGTTATAACTGA--
NAATTAATTAATTNNN
A C G T A C G T C T G A C T A G A G C T C G A T C G T A C G A T G C T A C T G A G T A C C G A T C T A G G T C A A C G T A C G T
C A T G C G T A T G C A G C A T G A C T G T C A G C T A G A C T G C A T C T G A C G T A G C A T C A G T C T G A G T C A T C G A

PH0055.1_Hoxa7_2/Jaspar

Match Rank:8
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----AGTTATAACTGA
TNCCATTAATTACTNC
A C G T A C G T A C G T A C G T C T G A C T A G A G C T C G A T C G T A C G A T G C T A C T G A G T A C C G A T C T A G G T C A
A C G T C A G T A T G C A G T C T G C A A C G T G C A T G T C A C G T A A C G T C A G T C G T A T G A C A C G T T G C A T G A C

PH0120.1_Nkx6-3/Jaspar

Match Rank:9
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---AGTTATAACTGA--
CNNANTAATTAATTNNC
A C G T A C G T A C G T C T G A C T A G A G C T C G A T C G T A C G A T G C T A C T G A G T A C C G A T C T A G G T C A A C G T A C G T
T G A C T C G A T G C A T C G A A C T G G A C T T G C A C G T A G A C T G A C T C T G A G C T A C G A T C G A T C G A T A C G T G A T C

PH0118.1_Nkx6-1_1/Jaspar

Match Rank:10
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---AGTTATAACTGA--
CNNAGTAATTAATTNNC
A C G T A C G T A C G T C T G A C T A G A G C T C G A T C G T A C G A T G C T A C T G A G T A C C G A T C T A G G T C A A C G T A C G T
T A G C T C A G T C G A C T G A C A T G G A C T G T C A C G T A C G A T C G A T C T G A G C T A C G A T G C A T C G A T A C G T G A T C