Information for 17-CGTGGTCACA (Motif 28)

A G T C A C T G A C G T A C T G A C T G A C G T A G T C C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T A C T G C G T A A G T C A G T C C G T A A G T C A C T G
p-value:1e-3
log p-value:-7.076e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.00%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets64.0 +/- 0.0bp
Average Position of motif in Background101.1 +/- 43.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0057.1_Rxra_1/Jaspar

Match Rank:1
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----CGTGGTCACA---
NTNNNGGGGTCANGNNN
A C G T A C G T A C G T A C G T A G T C A C T G A C G T A C T G A C T G A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CGTGGTCACA
CYWSTGGTCARA
A C G T A C G T A G T C A C T G A C G T A C T G A C T G A C G T A G T C C G T A A G T C C G T A
G A T C G A C T C G T A T A G C C G A T A C T G A C T G G A C T T G A C C G T A T C A G C T G A

NR2C1/MA1535.1/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CGTGGTCACA
CGAGGTCAC-
A G T C A C T G A C G T A C T G A C T G A C G T A G T C C G T A A G T C C G T A
G T A C C T A G T C G A A C T G A C T G A C G T A T G C C T G A G A T C A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CGTGGTCACA
AGRGGTCA--
A G T C A C T G A C G T A C T G A C T G A C G T A G T C C G T A A G T C C G T A
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T

EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer

Match Rank:5
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CGTGGTCACA
NRBCARRGGTCA--
A C G T A C G T A C G T A C G T A G T C A C T G A C G T A C T G A C T G A C G T A G T C C G T A A G T C C G T A
T C A G T C A G A C G T G T A C G C T A T C A G C T G A A C T G A C T G A G C T A G T C C G T A A C G T A C G T

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:6
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----CGTGGTCACA--
NNANTGGTGGTCTTNNN
A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T A C T G A C T G A C G T A G T C C G T A A G T C C G T A A C G T A C G T
T C A G A G C T G T C A T G C A C G A T C T A G C T A G C A G T A T C G C A T G C A G T T G A C A C G T G A C T G T C A G C A T C T A G

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CGTGGTCACA
--AGGTCA--
A G T C A C T G A C G T A C T G A C T G A C G T A G T C C G T A A G T C C G T A
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:8
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CGTGGTCACA--
CGCGCCGGGTCACGTA
A C G T A C G T A C G T A C G T A G T C A C T G A C G T A C T G A C T G A C G T A G T C C G T A A G T C C G T A A C G T A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

PB0159.1_Rfx4_2/Jaspar

Match Rank:9
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CGTGGTCACA--
TACCCTAGTTACCGA
A C G T A C G T A C G T A G T C A C T G A C G T A C T G A C T G A C G T A G T C C G T A A G T C C G T A A C G T A C G T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

PAX5/MA0014.3/Jaspar

Match Rank:10
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CGTGGTCACA---
-NNGGTCACGCTC
A G T C A C T G A C G T A C T G A C T G A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T
A C G T T C A G C A T G T C A G A T C G G A C T A T G C C G T A A G T C T C A G A T G C G A C T A G T C