Information for 1-AGTCGTATTC (Motif 3)

C G T A A C T G A C G T A G T C A C T G A C G T C G T A A C G T A C G T A G T C
Reverse Opposite:
A C T G C G T A C G T A A C G T C G T A A G T C A C T G C G T A A G T C A C G T
p-value:1e-3
log p-value:-9.120e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets33.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0106.1_Arid5a_2/Jaspar

Match Rank:1
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---AGTCGTATTC----
TNNTTTCGTATTNNANN
A C G T A C G T A C G T C G T A A C T G A C G T A G T C A C T G A C G T C G T A A C G T A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A G C T T C G A G C A T G A C T G A C T A T G C A T C G A C G T T G C A A C G T C G A T A C T G G C A T C T G A G A C T T A C G

PROX1/MA0794.1/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGTCGTATTC
TAAGGCGTCTTG
A C G T A C G T C G T A A C T G A C G T A G T C A C T G A C G T C G T A A C G T A C G T A G T C
A G C T T C G A G T C A T C A G C T A G G T A C C T A G A G C T G A T C C G A T G A C T T C A G

PB0136.1_IRC900814_2/Jaspar

Match Rank:3
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------AGTCGTATTC
ATGGAAAGTCGTAAAA
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A G T C A C T G A C G T C G T A A C G T A C G T A G T C
C T G A A G C T A C T G C T A G C T G A T C G A G T C A A C T G G A C T A G T C C A T G A C G T C T G A C G T A T C G A G C T A

HOXA9/MA0594.2/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGTCGTATTC-
-GTCGTAAACG
C G T A A C T G A C G T A G T C A C T G A C G T C G T A A C G T A C G T A G T C A C G T
A C G T T C A G G A C T G T A C T C A G A G C T G C T A G C T A G C T A G A T C T A C G

PH0066.1_Hoxc11/Jaspar

Match Rank:5
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AGTCGTATTC---
TAAAGTCGTAAAATAG
A C G T A C G T A C G T C G T A A C T G A C G T A G T C A C T G A C G T C G T A A C G T A C G T A G T C A C G T A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

PB0032.1_IRC900814_1/Jaspar

Match Rank:6
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------AGTCGTATTC
GNNATTTGTCGTAANN
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A G T C A C T G A C G T C G T A A C G T A C G T A G T C
T C A G G A T C G C A T C G T A C G A T C G A T G A C T A C T G G A C T A G T C A C T G C A G T T C G A C T G A G C T A G C A T

PH0076.1_Hoxd11/Jaspar

Match Rank:7
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---AGTCGTATTC----
TAAGGTCGTAAAATCCT
A C G T A C G T A C G T C G T A A C T G A C G T A G T C A C T G A C G T C G T A A C G T A C G T A G T C A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T C A G T C A G A G C T G A T C C T A G A C G T C G T A C G T A G C T A G C T A G C A T G A T C G A T C C A G T

PH0077.1_Hoxd12/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---AGTCGTATTC----
CAAGGTCGTAAAATCTT
A C G T A C G T A C G T C G T A A C T G A C G T A G T C A C T G A C G T C G T A A C G T A C G T A G T C A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T

PH0065.1_Hoxc10/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---AGTCGTATTC---
TAAAGTCGTAAAACGT
A C G T A C G T A C G T C G T A A C T G A C G T A G T C A C T G A C G T C G T A A C G T A C G T A G T C A C G T A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

HOXD12/MA0873.1/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AGTCGTATTC-
AGTCGTAAAAA
C G T A A C T G A C G T A G T C A C T G A C G T C G T A A C G T A C G T A G T C A C G T
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A