Information for 7-AGGCATCAACAT (Motif 7)

C G T A C T A G C A T G A G T C T G C A A C G T A G T C G T C A C T G A A G T C G T C A A G C T
Reverse Opposite:
T C G A A C G T C T A G A G C T A C G T T C A G C G T A A C G T T C A G G T A C A G T C C G A T
p-value:1e-15
log p-value:-3.473e+01
Information Content per bp:1.716
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.06%
Number of Background Sequences with motif5.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets135.1 +/- 26.0bp
Average Position of motif in Background73.7 +/- 32.3bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0166.1_Six6_2/Jaspar

Match Rank:1
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----AGGCATCAACAT-
AATAGGGTATCAATATT
A C G T A C G T A C G T A C G T C G T A C T A G C A T G A G T C T G C A A C G T A G T C G T C A C T G A A G T C G T C A A G C T A C G T
C T G A C G T A C G A T T C G A C T A G C A T G T C A G C A G T C T G A A C G T G A T C G C T A G C T A G A C T G C T A G A C T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGGCATCAACAT-
-BTVATTWGCATA
C G T A C T A G C A T G A G T C T G C A A C G T A G T C G T C A C T G A A G T C G T C A A G C T A C G T
A C G T A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGGCATCAACAT
CNAGGCCT------
A C G T A C G T C G T A C T A G C A T G A G T C T G C A A C G T A G T C G T C A C T G A A G T C G T C A A G C T
A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGGCATCAACAT-
-SSAATCCACANN
C G T A C T A G C A T G A G T C T G C A A C G T A G T C G T C A C T G A A G T C G T C A A G C T A C G T
A C G T A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

MAFG/MA0659.2/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AGGCATCAACAT-----
--GAGTCAGCATTTTTT
C G T A C T A G C A T G A G T C T G C A A C G T A G T C G T C A C T G A A G T C G T C A A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G C G T A T A C G C G A T G T A C C G T A A C T G G A T C C G T A C G A T G C A T G C A T G A C T G A C T G C A T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGGCATCAACAT
GGCCATTAAC--
C G T A C T A G C A T G A G T C T G C A A C G T A G T C G T C A C T G A A G T C G T C A A G C T
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T

PH0137.1_Pitx1/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----AGGCATCAACAT-
TTAGAGGGATTAACAAT
A C G T A C G T A C G T A C G T C G T A C T A G C A T G A G T C T G C A A C G T A G T C G T C A C T G A A G T C G T C A A G C T A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

FOXH1/MA0479.1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGGCATCAACAT
TCCAATCCACA-
C G T A C T A G C A T G A G T C T G C A A C G T A G T C G T C A C T G A A G T C G T C A A G C T
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A A C G T

Foxj2/MA0614.1/Jaspar

Match Rank:9
Score:0.57
Offset:4
Orientation:forward strand
Alignment:AGGCATCAACAT
----GTAAACAA
C G T A C T A G C A T G A G T C T G C A A C G T A G T C G T C A C T G A A G T C G T C A A G C T
A C G T A C G T A C G T A C G T C T A G G C A T G T C A C G T A C G T A A G T C C G T A C G T A

FOXL1/MA0033.2/Jaspar

Match Rank:10
Score:0.57
Offset:4
Orientation:forward strand
Alignment:AGGCATCAACAT
----GTAAACA-
C G T A C T A G C A T G A G T C T G C A A C G T A G T C G T C A C T G A A G T C G T C A A G C T
A C G T A C G T A C G T A C G T C T A G G A C T T G C A G T C A T G C A A G T C G T C A A C G T