Information for 13-AWGCAMCACG (Motif 27)

C G T A G C A T A C T G T G A C G T C A G T C A T A G C C G T A A T G C T A C G
Reverse Opposite:
A T G C A T C G G C A T A T C G C A G T C A G T A C T G A G T C C G T A G C A T
p-value:1e-6
log p-value:-1.590e+01
Information Content per bp:1.769
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.14%
Number of Background Sequences with motif6.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets88.0 +/- 32.8bp
Average Position of motif in Background114.3 +/- 61.4bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.70
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AWGCAMCACG---------
GAAGTANCACGAATNMRAGT
A C G T C G T A G C A T A C T G T G A C G T C A G T C A T A G C C G T A A T G C T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T

SCRT2/MA0744.2/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AWGCAMCACG-----
AAAGCAACAGGTGGTT
A C G T C G T A G C A T A C T G T G A C G T C A G T C A T A G C C G T A A T G C T A C G A C G T A C G T A C G T A C G T A C G T
C T G A T C G A C G T A A C T G G A T C G T C A C T G A T A G C G C T A C T A G C A T G G A C T C A T G C A T G G A C T G C A T

SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AWGCAMCACG--
--GCAACAGGTG
C G T A G C A T A C T G T G A C G T C A G T C A T A G C C G T A A T G C T A C G A C G T A C G T
A C G T A C G T A C T G A G T C G T C A C G T A A G T C C G T A C T A G C T A G G A C T C A T G

HLF/MA0043.3/Jaspar

Match Rank:4
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----AWGCAMCACG
TTGTTATGCAACAA-
A C G T A C G T A C G T A C G T A C G T C G T A G C A T A C T G T G A C G T C A G T C A T A G C C G T A A T G C T A C G
C G A T C A G T T C A G G C A T C A G T C T G A A G C T C T A G G A T C G T C A C T G A A G T C G T C A C G T A A C G T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AWGCAMCACG
TTGCAACATN
C G T A G C A T A C T G T G A C G T C A G T C A T A G C C G T A A T G C T A C G
C A G T A C G T C T A G A G T C G T C A C G T A G A T C G C T A A G C T G A T C

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AWGCAMCACG
AGATGCAATCCC
A C G T A C G T C G T A G C A T A C T G T G A C G T C A G T C A T A G C C G T A A T G C T A C G
T C G A C T A G C T G A A G C T A C T G G T A C G T C A T G C A A G C T T G A C T A G C A G T C

PB0117.1_Eomes_2/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AWGCAMCACG-----
NNGGCGACACCTCNNN
A C G T C G T A G C A T A C T G T G A C G T C A G T C A T A G C C G T A A T G C T A C G A C G T A C G T A C G T A C G T A C G T
A T C G T C G A T C A G A T C G T G A C C T A G G C T A A G T C C T G A A T G C A G T C G A C T G A T C A G T C T A C G A G T C

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AWGCAMCACG--
--GCCACACCCA
C G T A G C A T A C T G T G A C G T C A G T C A T A G C C G T A A T G C T A C G A C G T A C G T
A C G T A C G T C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A

SCRT1/MA0743.2/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AWGCAMCACG-----
AATTCAACAGGTGGTT
A C G T C G T A G C A T A C T G T G A C G T C A G T C A T A G C C G T A A T G C T A C G A C G T A C G T A C G T A C G T A C G T
C G T A C T G A C G A T A C G T G A T C G T C A C T G A A T G C G C T A C T A G C T A G G A C T C A T G C A T G A G C T G C A T

KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AWGCAMCACG---
-GGCCACRCCCMK
C G T A G C A T A C T G T G A C G T C A G T C A T A G C C G T A A T G C T A C G A C G T A C G T A C G T
A C G T C T A G C T A G T G A C G T A C T G C A A G T C C T A G A G T C A G T C A G T C G T C A C A T G