Information for 2-CTAAAGGA (Motif 40)

A G T C A C G T C G T A C G T A C G T A A C T G A C T G C G T A
Reverse Opposite:
A C G T A G T C A G T C A C G T A C G T A C G T C G T A A C T G
p-value:1e-2
log p-value:-5.849e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif416.7
Percentage of Background Sequences with motif0.68%
Average Position of motif in Targets142.5 +/- 30.5bp
Average Position of motif in Background106.5 +/- 71.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1/MA1608.1/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--CTAAAGGA-
NNCTAATGGNN
A C G T A C G T A G T C A C G T C G T A C G T A C G T A A C T G A C T G C G T A A C G T
A C G T T C A G G A T C C G A T C T G A C G T A G A C T C A T G C T A G T G C A G A C T

BARHL2/MA0635.1/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CTAAAGGA-
GCTAAACGGT
A C G T A G T C A C G T C G T A C G T A C G T A A C T G A C T G C G T A A C G T
T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CTAAAGGA
CTAATKGV
A G T C A C G T C G T A C G T A C G T A A C T G A C T G C G T A
A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C

BARHL1/MA0877.2/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CTAAAGGA
CTAAACGG
A G T C A C G T C G T A C G T A C G T A A C T G A C T G C G T A
T A G C C G A T C G T A G T C A C G T A A G T C C T A G C A T G

OVOL2/MA1545.1/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CTAAAGGA--
NNNNTAACGGTNN
A C G T A C G T A C G T A G T C A C G T C G T A C G T A C G T A A C T G A C T G C G T A A C G T A C G T
T A G C C T G A G T A C T C G A A G C T G T C A C T G A A G T C A T C G A T C G C G A T G C T A G A T C

ZBTB6/MA1581.1/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CTAAAGGA-
NNGGCTCAAGGNN
A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A C G T A A C T G A C T G C G T A A C G T
A T G C A C T G C T A G C A T G A G T C C A G T A T G C G T C A T C G A C A T G A T C G T C G A G T A C

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CTAAAGGA--
NTAATKGTTT
A G T C A C G T C G T A C G T A C G T A A C T G A C T G C G T A A C G T A C G T
A G T C G C A T T C G A T C G A C A G T C A T G T A C G G A C T G A C T A G C T

Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CTAAAGGA-----
-NDCAGGAARTNN
A G T C A C G T C G T A C G T A C G T A A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T T G C A C T G A T A G C G T C A A C T G A C T G C G T A G C T A T C A G G A C T T C A G T A C G

ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CTAAAGGA---
NBYCAAGGTCAC
A C G T A G T C A C G T C G T A C G T A C G T A A C T G A C T G C G T A A C G T A C G T A C G T
A T C G A T G C A G C T T A G C T C G A C T G A C T A G A C T G C A G T A T G C C T G A G T A C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CTAAAGGA
NGYCATAAAWCH
A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A C G T A A C T G A C T G C G T A
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A