Information for 12-TAGTTCAGCC (Motif 32)

A C G T C G T A A C T G A C G T A C G T A G T C C G T A A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C A C G T A C T G C G T A C G T A A G T C A C G T C G T A
p-value:1e-3
log p-value:-7.028e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif9.09%
Number of Background Sequences with motif6.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets121.0 +/- 0.0bp
Average Position of motif in Background105.8 +/- 84.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR1I3/MA1534.1/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TAGTTCAGCC
AAAGTTCAT--
A C G T A C G T C G T A A C T G A C G T A C G T A G T C C G T A A C T G A G T C A G T C
C G T A C T G A C T G A A C T G A C G T C A G T A G T C C T G A G A C T A C G T A C G T

VDR/MA0693.2/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TAGTTCAGCC
TGAGTTCA---
A C G T A C G T C G T A A C T G A C G T A C G T A G T C C G T A A C T G A G T C A G T C
G A C T T C A G C T G A A C T G A C G T C A G T G A T C C T G A A C G T A C G T A C G T

RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TAGTTCAGCC
CAAAGKTCAA--
A C G T A C G T A C G T C G T A A C T G A C G T A C G T A G T C C G T A A C T G A G T C A G T C
G A T C G T C A T C G A T C G A C T A G C A T G A G C T G T A C T C G A T C G A A C G T A C G T

HMBOX1/MA0895.1/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TAGTTCAGCC
ACTAGTTAAC--
A C G T A C G T A C G T C G T A A C T G A C G T A C G T A G T C C G T A A C T G A G T C A G T C
T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.60
Offset:5
Orientation:forward strand
Alignment:TAGTTCAGCC
-----CAGCC
A C G T C G T A A C T G A C G T A C G T A G T C C G T A A C T G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C

RORA(var.2)/MA0072.1/Jaspar

Match Rank:6
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------TAGTTCAGCC
TATAAGTAGGTCAA--
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C G T A G T C C G T A A C T G A G T C A G T C
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:7
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TAGTTCAGCC
AAYTAGGTCA---
A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C G T A G T C C G T A A C T G A G T C A G T C
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:8
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TAGTTCAGCC
AAYTAGGTCA---
A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C G T A G T C C G T A A C T G A G T C A G T C
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:9
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----TAGTTCAGCC
WAABTAGGTCAV--
A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C G T A G T C C G T A A C T G A G T C A G T C
C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:TAGTTCAGCC--
----BCAGACWA
A C G T C G T A A C T G A C G T A C G T A G T C C G T A A C T G A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A