Information for 2-CAAATGCATACT (Motif 2)

G T A C G T C A C T G A G T C A A C G T A C T G A G T C C G T A A C G T C G T A A G T C A C G T
Reverse Opposite:
G T C A A C T G A C G T C G T A A C G T A C T G A G T C C G T A A C G T A G C T A C G T A C T G
p-value:1e-8
log p-value:-1.929e+01
Information Content per bp:1.858
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif37.50%
Number of Background Sequences with motif52.9
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets98.3 +/- 67.3bp
Average Position of motif in Background118.3 +/- 95.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.72
Offset:3
Orientation:forward strand
Alignment:CAAATGCATACT-
---ATGMATATDC
G T A C G T C A C T G A G T C A A C G T A C T G A G T C C G T A A C G T C G T A A G T C A C G T A C G T
A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.70
Offset:3
Orientation:forward strand
Alignment:CAAATGCATACT-
---ATGAATATTC
G T A C G T C A C T G A G T C A A C G T A C T G A G T C C G T A A C G T C G T A A G T C A C G T A C G T
A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

PH0148.1_Pou3f3/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CAAATGCATACT---
AAAATATGCATAATAAA
A C G T A C G T G T A C G T C A C T G A G T C A A C G T A C T G A G T C C G T A A C G T C G T A A G T C A C G T A C G T A C G T A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

POU5F1/MA1115.1/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CAAATGCATACT
-ATATGCAAATT
G T A C G T C A C T G A G T C A A C G T A C T G A G T C C G T A A C G T C G T A A G T C A C G T
A C G T C G T A G C A T T C G A G A C T C T A G A G T C G C T A C T G A G C T A G C A T C A G T

PH0145.1_Pou2f3/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CAAATGCATACT-
TNTAATTTGCATACNA
A C G T A C G T A C G T G T A C G T C A C T G A G T C A A C G T A C T G A G T C C G T A A C G T C G T A A G T C A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0144.1_Pou2f2/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CAAATGCATACT-
TNTAATTTGCATANNN
A C G T A C G T A C G T G T A C G T C A C T G A G T C A A C G T A C T G A G T C C G T A A C G T C G T A A G T C A C G T A C G T
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A

Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CAAATGCATACT
GATTTGCATA--
G T A C G T C A C T G A G T C A A C G T A C T G A G T C C G T A A C G T C G T A A G T C A C G T
A C T G G T C A A C G T G C A T C G A T T C A G G T A C G T C A A C G T C T G A A C G T A C G T

POU2F3/MA0627.2/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CAAATGCATACT
NNATTTGCATATN
A C G T G T A C G T C A C T G A G T C A A C G T A C T G A G T C C G T A A C G T C G T A A G T C A C G T
C G A T G C A T G C T A G C A T G C A T G C A T T C A G G T A C G T C A G C A T C G T A G C A T C G A T

POU3F4/MA0789.1/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CAAATGCATACT
-ATTTGCATA--
G T A C G T C A C T G A G T C A A C G T A C T G A G T C C G T A A C G T C G T A A G T C A C G T
A C G T G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CAAATGCATACT
TTCATTTGCATAT-
A C G T A C G T G T A C G T C A C T G A G T C A A C G T A C T G A G T C C G T A A C G T C G T A A G T C A C G T
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T A C G T