Information for 5-GAACGATATGTG (Motif 6)

A C T G C G T A C G T A A G T C C T A G C G T A A C G T C G T A A C G T A C T G A C G T A C T G
Reverse Opposite:
A G T C C G T A A G T C C G T A C G A T C G T A A C G T A G T C A C T G A C G T A C G T A G T C
p-value:1e-14
log p-value:-3.281e+01
Information Content per bp:1.947
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets145.8 +/- 32.1bp
Average Position of motif in Background63.9 +/- 20.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GAACGATATGTG
-AAGGATATNTN
A C T G C G T A C G T A A G T C C T A G C G T A A C G T C G T A A C G T A C T G A C G T A C T G
A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

PB0183.1_Sry_2/Jaspar

Match Rank:2
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----GAACGATATGTG
TCACGGAACAATAGGTG
A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A G T C C T A G C G T A A C G T C G T A A C G T A C T G A C G T A C T G
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

PB0063.1_Sox13_1/Jaspar

Match Rank:3
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GAACGATATGTG
TTAAGAACAATAAATT
A C G T A C G T A C G T A C G T A C T G C G T A C G T A A G T C C T A G C G T A A C G T C G T A A C G T A C T G A C G T A C T G
C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GAACGATATGTG-
AAGAACATWHTGTTC
A C G T A C G T A C T G C G T A C G T A A G T C C T A G C G T A A C G T C G T A A C G T A C T G A C G T A C T G A C G T
C G T A C T G A C T A G C G T A C G T A A G T C C G T A C A G T G C A T G T C A C G A T A C T G A C G T G C A T G A T C

PB0173.1_Sox21_2/Jaspar

Match Rank:5
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----GAACGATATGTG
NNNNNGAACAATTGANN
A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A G T C C T A G C G T A A C G T C G T A A C G T A C T G A C G T A C T G
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GAACGATATGTG-
VAGRACAKWCTGTYC
A C G T A C G T A C T G C G T A C G T A A G T C C T A G C G T A A C G T C G T A A C G T A C T G A C G T A C T G A C G T
T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:7
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GAACGATATGTG-
VAGRACAKNCTGTBC
A C G T A C G T A C T G C G T A C G T A A G T C C T A G C G T A A C G T C G T A A C G T A C T G A C G T A C T G A C G T
T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

PB0072.1_Sox5_1/Jaspar

Match Rank:8
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GAACGATATGTG
TTTAGAACAATAAAAT
A C G T A C G T A C G T A C G T A C T G C G T A C G T A A G T C C T A G C G T A A C G T C G T A A C G T A C T G A C G T A C T G
C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T

Twist2/MA0633.1/Jaspar

Match Rank:9
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GAACGATATGTG
--ACCATATGTT
A C T G C G T A C G T A A G T C C T A G C G T A A C G T C G T A A C G T A C T G A C G T A C T G
A C G T A C G T C T G A G T A C A G T C C G T A A G C T C T G A A C G T A C T G A C G T A C G T

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GAACGATATGTG---
AGNACANNNTGTNCTN
A C G T A C T G C G T A C G T A A G T C C T A G C G T A A C G T C G T A A C G T A C T G A C G T A C T G A C G T A C G T A C G T
C T G A C T A G T C G A C G T A A G T C C T G A A T C G C G T A T A G C G A C T A C T G A C G T A G C T A G T C G A C T A T G C