Information for 6-TATAAATGATCG (Motif 9)

A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C T G C G T A A C G T A G T C A C T G
Reverse Opposite:
A G T C A C T G C G T A A C G T A G T C C G T A A C G T A C G T A C G T C G T A A C G T C G T A
p-value:1e-5
log p-value:-1.155e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets144.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX2/MA1113.2/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TATAAATGATCG
GTCATAAATCATT-
A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C T G C G T A A C G T A G T C A C T G
T C A G G A C T G T A C C T G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G A C T G C A T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TATAAATGATCG--
GTATAAAAGGCGGGG
A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C T G C G T A A C G T A G T C A C T G A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TATAAATGATCG--
GTATAAAAGGCGGGG
A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C T G C G T A A C G T A G T C A C T G A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TATAAATGATCG
NNCCATAAATCATNN
A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C T G C G T A A C G T A G T C A C T G
C T G A T C A G G A T C G T A C T C G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G C A T G C A T G A C T

BARHL2/MA0635.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TATAAATGATCG
GCTAAACGGT--
A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C T G C G T A A C G T A G T C A C T G
T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T A C G T A C G T

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TATAAATGATCG
NCYATMAATCAY--
A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C T G C G T A A C G T A G T C A C T G
T A C G G A T C G A T C C T G A A G C T G T C A G C T A T C G A C G A T G A T C G C T A G A C T A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:7
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TATAAATGATCG
GGCCATAAATCA---
A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C T G C G T A A C G T A G T C A C T G
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T A C G T

NR1H4/MA1110.1/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TATAAATGATCG-
--TCAATGACCTA
A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C T G C G T A A C G T A G T C A C T G A C G T
A C G T A C G T A C G T A G T C C G T A C T G A A G C T C T A G G T C A G T A C G T A C A G C T G C T A

PH0150.1_Pou4f3/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TATAAATGATCG-
AGTTATTAATGAGGTC
A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C T G C G T A A C G T A G T C A C T G A C G T
G C T A T C A G C A G T G C A T C G T A G A C T C G A T C G T A C G T A G A C T C A T G G T C A C T A G A C T G G A C T G A T C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TATAAATGATCG
NGYCATAAAWCH---
A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C T G C G T A A C G T A G T C A C T G
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T A C G T