Information for 8-NCCAAGCWGCCC (Motif 9)

C T G A A G T C T A G C C G T A G T C A A T C G A T G C G C T A C T A G A T G C G T A C G A T C
Reverse Opposite:
C A T G A C T G T A C G G A T C C G A T A T C G T A G C A C G T A C G T A T C G C T A G A G C T
p-value:1e-4
log p-value:-9.899e+00
Information Content per bp:1.588
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif31.25%
Number of Background Sequences with motif1487.3
Percentage of Background Sequences with motif2.72%
Average Position of motif in Targets76.8 +/- 39.9bp
Average Position of motif in Background101.1 +/- 70.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BHLHE22(var.2)/MA1635.1/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:NCCAAGCWGCCC
-NNCAGCTGNN-
C T G A A G T C T A G C C G T A G T C A A T C G A T G C G C T A C T A G A T G C G T A C G A T C
A C G T A T G C T A C G A T G C T C G A A T C G T A G C A G C T T C A G A T G C T A C G A C G T

NFYA/MA0060.3/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-NCCAAGCWGCCC
AACCAATCAGA--
A C G T C T G A A G T C T A G C C G T A G T C A A T C G A T G C G C T A C T A G A T G C G T A C G A T C
T C G A C T G A A G T C G A T C G C T A T C G A G A C T T A G C T C G A T A C G T G C A A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:NCCAAGCWGCCC
---CAGCTGNT-
C T G A A G T C T A G C C G T A G T C A A T C G A T G C G C T A C T A G A T G C G T A C G A T C
A C G T A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:NCCAAGCWGCCC
-CGCAGCTGCG-
C T G A A G T C T A G C C G T A G T C A A T C G A T G C G C T A C T A G A T G C G T A C G A T C
A C G T T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G A C G T

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:NCCAAGCWGCCC
NNACAGCTGC--
C T G A A G T C T A G C C G T A G T C A A T C G A T G C G C T A C T A G A T G C G T A C G A T C
C G T A T G A C T C G A A G T C C G T A A T C G A T G C A C G T A C T G A G T C A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.60
Offset:2
Orientation:forward strand
Alignment:NCCAAGCWGCCC
--NCAGCTGCTG
C T G A A G T C T A G C C G T A G T C A A T C G A T G C G C T A C T A G A T G C G T A C G A T C
A C G T A C G T T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G

Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:NCCAAGCWGCCC-
-DGCAGCTGCYSS
C T G A A G T C T A G C C G T A G T C A A T C G A T G C G C T A C T A G A T G C G T A C G A T C A C G T
A C G T C T G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G T C G A T C A T G C A T G C

NFYC/MA1644.1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-NCCAAGCWGCCC
AGCCAATCAGA--
A C G T C T G A A G T C T A G C C G T A G T C A A T C G A T G C G C T A C T A G A T G C G T A C G A T C
T C G A C T A G A G T C G T A C G C T A T C G A G A C T T A G C T C G A T A C G T G C A A C G T A C G T

MYOG/MA0500.2/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:NCCAAGCWGCCC
CAGCAGCTGCTG
C T G A A G T C T A G C C G T A G T C A A T C G A T G C G C T A C T A G A T G C G T A C G A T C
T A G C C T G A T C A G A G T C T C G A A C T G T G A C A G C T T C A G A G T C G A C T A T C G

ASCL1(var.2)/MA1631.1/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:NCCAAGCWGCCC-
CAGCACCTGCCCC
C T G A A G T C T A G C C G T A G T C A A T C G A T G C G C T A C T A G A T G C G T A C G A T C A C G T
A T G C C G T A T A C G A T G C C T G A A T G C T A G C A G C T T A C G A T G C G A T C A T G C A T G C