Information for 19-ATCATAGCAGCA (Motif 32)

C G T A A C G T A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C A C G T A C T G A G T C A C G T C G T A A C G T A C T G C G T A A C G T
p-value:1e-3
log p-value:-7.445e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif6.25%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets6.0 +/- 0.0bp
Average Position of motif in Background34.2 +/- 38.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RFX1/MA0509.2/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-ATCATAGCAGCA-
TNCCATAGCAACNN
A C G T C G T A A C G T A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C G T
G A C T C A T G A G T C G A T C G T C A G A C T T C G A C T A G G A T C C T G A T C G A G A T C G T C A T C A G

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-ATCATAGCAGCA--
TACCATAGCAACGGT
A C G T C G T A A C G T A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:ATCATAGCAGCA-
-SCCTAGCAACAG
C G T A A C G T A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C G T
A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

RFX3/MA0798.2/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-ATCATAGCAGCA-
TNCCATAGCAACNN
A C G T C G T A A C G T A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C G T
G A C T C A T G A G T C G A T C G T C A A G C T C T G A C T A G G A T C C T G A T C G A G A T C T G A C T C A G

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-ATCATAGCAGCA--
CCGCATAGCAACGGA
A C G T C G T A A C G T A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PB0054.1_Rfx3_1/Jaspar

Match Rank:6
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----ATCATAGCAGCA------
TGTGACCCTTAGCAACCGATTAA
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

GFI1/MA0038.2/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---ATCATAGCAGCA
CAAATCACTGCA---
A C G T A C G T A C G T C G T A A C G T A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C T G A G T C C G T A
A G T C T G C A G T C A C G T A A C G T G T A C C G T A T A G C C A G T C T A G G A T C G T C A A C G T A C G T A C G T

PB0120.1_Foxj1_2/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--ATCATAGCAGCA-
ATGTCACAACAACAC
A C G T A C G T C G T A A C G T A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C G T
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:ATCATAGCAGCA---
ADGGYAGYAGCATCT
C G T A A C G T A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C G T A C G T A C G T
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T

Gfi1b/MA0483.1/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--ATCATAGCAGCA
AAATCACAGCA---
A C G T A C G T C G T A A C G T A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C T G A G T C C G T A
T G C A C G T A C T G A A G C T A G T C G C T A T A G C C G T A C T A G G A T C G C T A A C G T A C G T A C G T