Information for 11-CAAAGTAATAAA (Motif 16)

A G T C C G T A C G T A C G T A A C T G A C G T C G T A C G T A A C G T C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C T G
p-value:1e-4
log p-value:-9.666e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA10/MA0899.1/Jaspar

Match Rank:1
Score:0.73
Offset:3
Orientation:forward strand
Alignment:CAAAGTAATAAA--
---GGTAATAAAAA
A G T C C G T A C G T A C G T A A C T G A C G T C G T A C G T A A C G T C G T A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:2
Score:0.72
Offset:4
Orientation:forward strand
Alignment:CAAAGTAATAAA--
----GTCATAAAAN
A G T C C G T A C G T A C G T A A C T G A C G T C G T A C G T A A C G T C G T A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

CDX2/MA0465.2/Jaspar

Match Rank:3
Score:0.72
Offset:2
Orientation:forward strand
Alignment:CAAAGTAATAAA--
--AAGCAATAAAAA
A G T C C G T A C G T A C G T A A C T G A C G T C G T A C G T A A C G T C G T A C G T A C G T A A C G T A C G T
A C G T A C G T C T G A C G T A C T A G G A T C G T C A C T G A A G C T C G T A C G T A G C T A C G T A G C T A

PH0046.1_Hoxa10/Jaspar

Match Rank:4
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CAAAGTAATAAA-----
-TAGGTAATAAAATTCA
A G T C C G T A C G T A C G T A A C T G A C G T C G T A C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A

HOXD9/MA0913.2/Jaspar

Match Rank:5
Score:0.71
Offset:4
Orientation:forward strand
Alignment:CAAAGTAATAAA--
----GCAATAAAAC
A G T C C G T A C G T A C G T A A C T G A C G T C G T A C G T A A C G T C G T A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T T C A G A G T C G T C A T C G A C G A T G C T A C G T A C G T A G T C A G A T C

PH0013.1_Cdx2/Jaspar

Match Rank:6
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CAAAGTAATAAA----
AAAGGTAATAAAATTT
A G T C C G T A C G T A C G T A A C T G A C G T C G T A C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

PH0012.1_Cdx1/Jaspar

Match Rank:7
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CAAAGTAATAAA----
TAAGGTAATAAAATTA
A G T C C G T A C G T A C G T A A C T G A C G T C G T A C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CAAAGTAATAAA--
--HDGYAATGAAAN
A G T C C G T A C G T A C G T A A C T G A C G T C G T A C G T A A C G T C G T A C G T A C G T A A C G T A C G T
A C G T A C G T G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A

PH0071.1_Hoxc6/Jaspar

Match Rank:9
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CAAAGTAATAAA-----
CAAATTAATTAATAAAA
A G T C C G T A C G T A C G T A A C T G A C G T C G T A C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A G T C C T G A G C T A T C G A C A G T G A C T G C T A C G T A C G A T C G A T C T G A G T C A A C G T C G T A T C G A T G C A C G T A

PH0064.1_Hoxb9/Jaspar

Match Rank:10
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CAAAGTAATAAA-----
-AGAGCCATAAAATTCG
A G T C C G T A C G T A C G T A A C T G A C G T C G T A C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G