Information for 17-GGTGTCAGTC (Motif 34)

A C T G A C T G A C G T A C T G A C G T A G T C C G T A A C T G A C G T A G T C
Reverse Opposite:
A C T G C G T A A G T C A C G T A C T G C G T A A G T C C G T A A G T C A G T C
p-value:1e-3
log p-value:-6.992e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif29.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets136.0 +/- 0.0bp
Average Position of motif in Background72.6 +/- 97.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0164.1_Six4/Jaspar

Match Rank:1
Score:0.79
Offset:-5
Orientation:reverse strand
Alignment:-----GGTGTCAGTC--
TNNNNGGTGTCATNTNT
A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C G T A C T G A C G T A G T C C G T A A C T G A C G T A G T C A C G T A C G T
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GGTGTCAGTC-
AGGTGHCAGACA
A C G T A C T G A C T G A C G T A C T G A C G T A G T C C G T A A C T G A C G T A G T C A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GGTGTCAGTC--
SCTGTCAVTCAV
A C T G A C T G A C G T A C T G A C G T A G T C C G T A A C T G A C G T A G T C A C G T A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-GGTGTCAGTC--
AGGTGNCAGACAG
A C G T A C T G A C T G A C G T A C T G A C G T A G T C C G T A A C T G A C G T A G T C A C G T A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

PKNOX1/MA0782.2/Jaspar

Match Rank:5
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--GGTGTCAGTC---
NNGCTGTCACTCANN
A C G T A C G T A C T G A C T G A C G T A C T G A C G T A G T C C G T A A C T G A C G T A G T C A C G T A C G T A C G T
G A C T T C G A A T C G T G A C G C A T C T A G G A C T T A G C G C T A T G A C G A C T A G T C G C T A C G T A G C T A

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:6
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:GGTGTCAGTC
VBTGWCAGCB
A C T G A C T G A C G T A C T G A C G T A G T C C G T A A C T G A C G T A G T C
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GGTGTCAGTC--
NCTGTCAATCAN
A C T G A C T G A C G T A C T G A C G T A G T C C G T A A C T G A C G T A G T C A C G T A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GGTGTCAGTC
AGGTGTCA---
A C G T A C T G A C T G A C G T A C T G A C G T A G T C C G T A A C T G A C G T A G T C
C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T A C G T

TBX3/MA1566.1/Jaspar

Match Rank:9
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GGTGTCAGTC
GAGGTGTGAA--
A C G T A C G T A C T G A C T G A C G T A C T G A C G T A G T C C G T A A C T G A C G T A G T C
C T A G C T G A T A C G T A C G G A C T A C T G A G C T A T C G C T G A T C G A A C G T A C G T

TBX5/MA0807.1/Jaspar

Match Rank:10
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GGTGTCAGTC
AGGTGTGA---
A C G T A C T G A C T G A C G T A C T G A C G T A G T C C G T A A C T G A C G T A G T C
C T G A T C A G A C T G A C G T C T A G A G C T A C T G C T G A A C G T A C G T A C G T