Information for 4-SSWAAKGYCTGW (Motif 4)

A T C G A T G C C G A T C G T A C T G A A C G T A C T G A G C T A G T C A C G T A C T G C G T A
Reverse Opposite:
G C A T A G T C C G T A A C T G C T G A A G T C G T C A A G C T A C G T C G T A A T C G A T G C
p-value:1e-5
log p-value:-1.301e+01
Information Content per bp:1.804
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif42.86%
Number of Background Sequences with motif412.9
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets89.2 +/- 16.5bp
Average Position of motif in Background101.5 +/- 82.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.64
Offset:4
Orientation:forward strand
Alignment:SSWAAKGYCTGW
----AGGCCTNG
A T C G A T G C C G A T C G T A C T G A A C G T A C T G A G C T A G T C A C G T A C T G C G T A
A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:SSWAAKGYCTGW-----
NNTNNTGTCTGGNNTNG
A T C G A T G C C G A T C G T A C T G A A C G T A C T G A G C T A G T C A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

NR4A1/MA1112.2/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:SSWAAKGYCTGW
TTAAAGGTCAAA
A T C G A T G C C G A T C G T A C T G A A C G T A C T G A G C T A G T C A C G T A C T G C G T A
C A G T G C A T C T G A C T G A T C G A C A T G C A T G A C G T A G T C C T G A T C G A C T G A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.60
Offset:4
Orientation:forward strand
Alignment:SSWAAKGYCTGW
----TWGTCTGV
A T C G A T G C C G A T C G T A C T G A A C G T A C T G A G C T A G T C A C G T A C T G C G T A
A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

TBX21/MA0690.1/Jaspar

Match Rank:5
Score:0.59
Offset:3
Orientation:forward strand
Alignment:SSWAAKGYCTGW-
---AAGGTGTGAA
A T C G A T G C C G A T C G T A C T G A A C G T A C T G A G C T A G T C A C G T A C T G C G T A A C G T
A C G T A C G T A C G T C T G A C T G A C T A G A C T G A G C T C A T G G A C T A C T G C T G A G C T A

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.59
Offset:7
Orientation:forward strand
Alignment:SSWAAKGYCTGW-
-------GCTGTG
A T C G A T G C C G A T C G T A C T G A A C G T A C T G A G C T A G T C A C G T A C T G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.59
Offset:4
Orientation:forward strand
Alignment:SSWAAKGYCTGW
----CTGTCTGG
A T C G A T G C C G A T C G T A C T G A A C G T A C T G A G C T A G T C A C G T A C T G C G T A
A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:SSWAAKGYCTGW
-CAAAGGTCAG-
A T C G A T G C C G A T C G T A C T G A A C G T A C T G A G C T A G T C A C G T A C T G C G T A
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--SSWAAKGYCTGW
ANGNAAAGGTCA--
A C G T A C G T A T C G A T G C C G A T C G T A C T G A A C G T A C T G A G C T A G T C A C G T A C T G C G T A
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---SSWAAKGYCTGW
GGGGCCGAGGCCTG-
A C G T A C G T A C G T A T C G A T G C C G A T C G T A C T G A A C G T A C T G A G C T A G T C A C G T A C T G C G T A
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T