Information for 1-SMMAAATSYAMT (Motif 1)

A T G C G T C A G T A C C G T A C G T A C G T A A C G T A T G C A G T C C G T A G T A C A C G T
Reverse Opposite:
C G T A A C T G C G A T C T A G A T C G C G T A A C G T A C G T A C G T A C T G A C G T A T C G
p-value:1e-4
log p-value:-1.047e+01
Information Content per bp:1.810
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif242.5
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets92.3 +/- 18.1bp
Average Position of motif in Background104.1 +/- 74.9bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0134.1_Hnf4a_2/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--SMMAAATSYAMT--
GGCAAAAGTCCAATAA
A C G T A C G T A T G C G T C A G T A C C G T A C G T A C G T A A C G T A T G C A G T C C G T A G T A C A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

PHOX2A/MA0713.1/Jaspar

Match Rank:2
Score:0.62
Offset:3
Orientation:forward strand
Alignment:SMMAAATSYAMT--
---TAATTTAATTA
A T G C G T C A G T A C C G T A C G T A C G T A A C G T A T G C A G T C C G T A G T A C A C G T A C G T A C G T
A C G T A C G T A C G T G C A T C T G A C T G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:SMMAAATSYAMT--
--NTAATBNAATTA
A T G C G T C A G T A C C G T A C G T A C G T A A C G T A T G C A G T C C G T A G T A C A C G T A C G T A C G T
A C G T A C G T G T A C G C A T C T G A C G T A G A C T A G C T C A T G T G C A C T G A A C G T G A C T C G T A

DUX4/MA0468.1/Jaspar

Match Rank:4
Score:0.61
Offset:3
Orientation:forward strand
Alignment:SMMAAATSYAMT--
---TAATTTAATCA
A T G C G T C A G T A C C G T A C G T A C G T A A C G T A T G C A G T C C G T A G T A C A C G T A C G T A C G T
A C G T A C G T A C G T G C A T C T G A C G T A G A C T A G C T A G C T G T C A C G T A A C G T A G T C C G T A

DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:SMMAAATSYAMT----
-NWTAAYCYAATCAWN
A T G C G T C A G T A C C G T A C G T A C G T A A C G T A T G C A G T C C G T A G T A C A C G T A C G T A C G T A C G T A C G T
A C G T C A T G G C A T C G A T C G T A C G T A G A T C A G T C A G C T C G T A C G T A A C G T A G T C C G T A C G T A G C A T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:SMMAAATSYAMT--
--SSAATCCACANN
A T G C G T C A G T A C C G T A C G T A C G T A A C G T A T G C A G T C C G T A G T A C A C G T A C G T A C G T
A C G T A C G T A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:7
Score:0.60
Offset:2
Orientation:forward strand
Alignment:SMMAAATSYAMT--
--YTAATYNRATTA
A T G C G T C A G T A C C G T A C G T A C G T A A C G T A T G C A G T C C G T A G T A C A C G T A C G T A C G T
A C G T A C G T G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A

PB0146.1_Mafk_2/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--SMMAAATSYAMT-
GAAAAAATTGCAAGG
A C G T A C G T A T G C G T C A G T A C C G T A C G T A C G T A A C G T A T G C A G T C C G T A G T A C A C G T A C G T
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:9
Score:0.59
Offset:3
Orientation:forward strand
Alignment:SMMAAATSYAMT---
---AGATGCAATCCC
A T G C G T C A G T A C C G T A C G T A C G T A A C G T A T G C A G T C C G T A G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A C T A G C T G A A G C T A C T G G T A C G T C A T G C A A G C T T G A C T A G C A G T C

Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer

Match Rank:10
Score:0.59
Offset:3
Orientation:forward strand
Alignment:SMMAAATSYAMT---
---TAAYCYAATCAA
A T G C G T C A G T A C C G T A C G T A C G T A A C G T A T G C A G T C C G T A G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T T C G A C T G A G A T C A G T C G A T C G T C A G T C A A C G T A G T C C G T A C T G A