Information for 6-RTGCATTTGCTW (Motif 9)

C T G A A C G T A C T G A G T C C G T A A C G T C G A T A C G T A C T G A G T C A C G T C G T A
Reverse Opposite:
C G A T C G T A A C T G A G T C C G T A C G T A C G T A A C G T A C T G A G T C C G T A A G C T
p-value:1e-8
log p-value:-1.883e+01
Information Content per bp:1.920
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif6.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets151.0 +/- 30.4bp
Average Position of motif in Background97.5 +/- 57.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:RTGCATTTGCTW
ATGMATATDC--
C T G A A C G T A C T G A G T C C G T A A C G T C G A T A C G T A C T G A G T C A C G T C G T A
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:RTGCATTTGCTW--
-TTCATTTGCATAT
C T G A A C G T A C T G A G T C C G T A A C G T C G A T A C G T A C T G A G T C A C G T C G T A A C G T A C G T
A C G T G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:RTGCATTTGCTW--
----ATTTGCATAT
C T G A A C G T A C T G A G T C C G T A A C G T C G A T A C G T A C T G A G T C A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T

BHLHE22/MA0818.1/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:RTGCATTTGCTW
-ANCATATGGT-
C T G A A C G T A C T G A G T C C G T A A C G T C G A T A C G T A C T G A G T C A C G T C G T A
A C G T C T G A T C G A T G A C C T G A A C G T C T G A G A C T A C T G A C T G A G C T A C G T

BHLHE23/MA0817.1/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:RTGCATTTGCTW
NAACATATGTTT
C T G A A C G T A C T G A G T C C G T A A C G T C G A T A C G T A C T G A G T C A C G T C G T A
G C T A C T G A T G C A T G A C C T G A A C G T T C G A G A C T A C T G A C G T A G C T G C A T

POU2F3/MA0627.2/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:RTGCATTTGCTW---
--NNATTTGCATATN
C T G A A C G T A C T G A G T C C G T A A C G T C G A T A C G T A C T G A G T C A C G T C G T A A C G T A C G T A C G T
A C G T A C G T C G A T G C A T G C T A G C A T G C A T G C A T T C A G G T A C G T C A G C A T C G T A G C A T C G A T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.59
Offset:4
Orientation:forward strand
Alignment:RTGCATTTGCTW--
----ATTTGCATAA
C T G A A C G T A C T G A G T C C G T A A C G T C G A T A C G T A C T G A G T C A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--RTGCATTTGCTW
AGATGCAATCCC--
A C G T A C G T C T G A A C G T A C T G A G T C C G T A A C G T C G A T A C G T A C T G A G T C A C G T C G T A
T C G A C T A G C T G A A G C T A C T G G T A C G T C A T G C A A G C T T G A C T A G C A G T C A C G T A C G T

Bhlha15/MA0607.1/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:RTGCATTTGCTW
--ACATATGG--
C T G A A C G T A C T G A G T C C G T A A C G T C G A T A C G T A C T G A G T C A C G T C G T A
A C G T A C G T T C G A A G T C C G T A A C G T G T C A A C G T A C T G A T C G A C G T A C G T

MYB/MA0100.3/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:RTGCATTTGCTW
-NNCAGTTGNN-
C T G A A C G T A C T G A G T C C G T A A C G T C G A T A C G T A C T G A G T C A C G T C G T A
A C G T C A T G C T G A A G T C T G C A A C T G C G A T G A C T T C A G T C A G C A G T A C G T