Information for 2-TTTAGGGTTT (Motif 6)

A G C T A C G T A G C T C G T A C T A G C T A G C T A G A G C T A G C T A C G T
Reverse Opposite:
G T C A C T G A T C G A G A T C A G T C G A T C C G A T T C G A G T C A C T G A
p-value:1e-9
log p-value:-2.135e+01
Information Content per bp:1.744
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif7.46%
Number of Background Sequences with motif1028.0
Percentage of Background Sequences with motif2.13%
Average Position of motif in Targets104.6 +/- 57.9bp
Average Position of motif in Background98.8 +/- 55.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TTTAGGGTTT
TTTTATGGCB-
A C G T A G C T A C G T A G C T C G T A C T A G C T A G C T A G A G C T A G C T A C G T
G C A T C G A T G C A T G A C T G C T A A G C T C A T G C T A G A T G C A G T C A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:2
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TTTAGGGTTT
DGWTTTATGRCN-
A C G T A C G T A C G T A G C T A C G T A G C T C G T A C T A G C T A G C T A G A G C T A G C T A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TTTAGGGTTT-
---NGGGATTA
A G C T A C G T A G C T C G T A C T A G C T A G C T A G A G C T A G C T A C G T A C G T
A C G T A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A

PH0064.1_Hoxb9/Jaspar

Match Rank:4
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TTTAGGGTTT-
NGANTTTTATGGCTCN
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A G C T C G T A C T A G C T A G C T A G A G C T A G C T A C G T A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TTTAGGGTTT
TTTTATGGCM-
A C G T A G C T A C G T A G C T C G T A C T A G C T A G C T A G A G C T A G C T A C G T
C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C A C G T

PH0047.1_Hoxa11/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TTTAGGGTTT--
NNGTTTTACGACTTTA
A C G T A C G T A C G T A C G T A G C T A C G T A G C T C G T A C T A G C T A G C T A G A G C T A G C T A C G T A C G T A C G T
G T C A G A C T C T A G C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C G T A

PH0066.1_Hoxc11/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TTTAGGGTTT--
NNNTTTTACGACNTTN
A C G T A C G T A C G T A C G T A G C T A C G T A G C T C G T A C T A G C T A G C T A G A G C T A G C T A C G T A C G T A C G T
G T A C G A C T C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C T G A

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TTTAGGGTTT
TTTNATTGCY-
A C G T A G C T A C G T A G C T C G T A C T A G C T A G C T A G A G C T A G C T A C G T
A C G T A C G T C G A T A C G T G T C A A C G T C A G T C T A G A T G C G A T C A C G T

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TTTAGGGTTT
NTTTCATTRCHD
A C G T A C G T A G C T A C G T A G C T C G T A C T A G C T A G C T A G A G C T A G C T A C G T
C G A T G C A T A C G T C G A T A G T C C G T A A C G T A C G T C T A G A G T C G A C T C A G T

PH0065.1_Hoxc10/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TTTAGGGTTT--
ANNTTTTACGACNTNN
A C G T A C G T A C G T A C G T A G C T A C G T A G C T C G T A C T A G C T A G C T A G A G C T A G C T A C G T A C G T A C G T
T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A