Information for 3-GCAAAATGGTCC (Motif 4)

A C T G A G T C C G T A T G C A C G T A C G T A A C G T C T A G C T A G A G C T A G T C A G T C
Reverse Opposite:
A C T G A C T G C T G A A G T C A G T C C G T A A C G T A C G T A C G T A C G T C T A G A G T C
p-value:1e-16
log p-value:-3.810e+01
Information Content per bp:1.891
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets76.1 +/- 47.8bp
Average Position of motif in Background62.9 +/- 55.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0137.1_Irf3_2/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCAAAATGGTCC--
GGAGAAAGGTGCGA
A C T G A G T C C G T A T G C A C G T A C G T A A C G T C T A G C T A G A G C T A G T C A G T C A C G T A C G T
C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

SOX13/MA1120.1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCAAAATGGTCC
AAACAATGGCA-
A C T G A G T C C G T A T G C A C G T A C G T A A C G T C T A G C T A G A G C T A G T C A G T C
C T G A T C G A C T G A A G T C G C T A C T G A G C A T C T A G T C A G T G A C G C T A A C G T

SOX2/MA0143.4/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCAAAATGGTCC
AAACAATGGAA-
A C T G A G T C C G T A T G C A C G T A C G T A A C G T C T A G C T A G A G C T A G T C A G T C
C G T A C G T A G C T A G A T C G C T A T C G A C G A T C T A G C T A G C G T A G C T A A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCAAAATGGTCC
RAACAATGGN--
A C T G A G T C C G T A T G C A C G T A C G T A A C G T C T A G C T A G A G C T A G T C A G T C
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCAAAATGGTCC
VRAACAATGG---
A C G T A C T G A G T C C G T A T G C A C G T A C G T A A C G T C T A G C T A G A G C T A G T C A G T C
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GCAAAATGGTCC
CTCACACAATGGCGC
A C G T A C G T A C G T A C T G A G T C C G T A T G C A C G T A C G T A A C G T C T A G C T A G A G C T A G T C A G T C
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

YY1/MA0095.2/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCAAAATGGTCC-
-CAAGATGGCGGC
A C T G A G T C C G T A T G C A C G T A C G T A A C G T C T A G C T A G A G C T A G T C A G T C A C G T
A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GCAAAATGGTCC
VVRRAACAATGG---
A C G T A C G T A C G T A C T G A G T C C G T A T G C A C G T A C G T A A C G T C T A G C T A G A G C T A G T C A G T C
T G A C T A G C T C A G T C G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T A C G A C G T A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GCAAAATGGTCC--
NNTNNACAATGGGANNN
A C G T A C G T A C G T A C T G A G T C C G T A T G C A C G T A C G T A A C G T C T A G C T A G A G C T A G T C A G T C A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GCAAAATGGTCC
-RACAAWGG---
A C T G A G T C C G T A T G C A C G T A C G T A A C G T C T A G C T A G A G C T A G T C A G T C
A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T