Information for 9-CCATAGATCC (Motif 25)

A G T C A G T C C G T A A C G T C G T A A C T G C G T A A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A A C G T A G T C A C G T C G T A A C G T A C T G A C T G
p-value:1e-3
log p-value:-7.319e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif9.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets187.0 +/- 0.0bp
Average Position of motif in Background89.8 +/- 41.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:1
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CCATAGATCC
GGCCATAAATCA
A C G T A C G T A G T C A G T C C G T A A C G T C G T A A C T G C G T A A C G T A G T C A G T C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CCATAGATCC---
NNCCATAAATCATNN
A C G T A C G T A G T C A G T C C G T A A C G T C G T A A C T G C G T A A C G T A G T C A G T C A C G T A C G T A C G T
C T G A T C A G G A T C G T A C T C G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G C A T G C A T G A C T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:3
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CCATAGATCC
NTATYGATCH
A G T C A G T C C G T A A C G T C G T A A C T G C G T A A C G T A G T C A G T C
C T A G C A G T C G T A A C G T A G T C A C T G C G T A A G C T A G T C G A T C

PBX2/MA1113.2/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCATAGATCC--
GTCATAAATCATT
A C G T A G T C A G T C C G T A A C G T C G T A A C T G C G T A A C G T A G T C A G T C A C G T A C G T
T C A G G A C T G T A C C T G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G A C T G C A T

PB0159.1_Rfx4_2/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCATAGATCC---
TACCCTAGTTACCGA
A C G T A C G T A G T C A G T C C G T A A C G T C G T A A C T G C G T A A C G T A G T C A G T C A C G T A C G T A C G T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

SOX9/MA0077.1/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCATAGATCC
CCATTGTTC-
A G T C A G T C C G T A A C G T C G T A A C T G C G T A A C G T A G T C A G T C
A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CCATAGATCC--
--ATTGATTYND
A G T C A G T C C G T A A C G T C G T A A C T G C G T A A C G T A G T C A G T C A C G T A C G T
A C G T A C G T C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T

PB0163.1_Six6_2/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CCATAGATCC----
ATGGGATATATCCGCCT
A C G T A C G T A C G T A G T C A G T C C G T A A C G T C G T A A C T G C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T
T G C A C G A T A T C G T A C G A C T G T C G A G A C T C T G A A C G T G T C A A G C T G T A C A G T C T C A G G A T C G A T C C A G T

MEIS1(var.2)/MA1639.1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCATAGATCC--
GTCATCAATCATT
A C G T A G T C A G T C C G T A A C G T C G T A A C T G C G T A A C G T A G T C A G T C A C G T A C G T
C T A G G A C T G A T C C T G A C A G T G T A C G T C A G C T A G C A T G T A C G C T A G C A T G C A T

Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CCATAGATCC
-TATTGAYY-
A G T C A G T C C G T A A C G T C G T A A C T G C G T A A C G T A G T C A G T C
A C G T G C A T C G T A C G A T G A C T A C T G C T G A G A C T G A T C A C G T