Information for 4-GACCTAAC (Motif 30)

A C T G C G T A A G T C A G T C A C G T C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T C G T A A C T G A C T G A C G T A G T C
p-value:1e-2
log p-value:-4.821e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif479.2
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets24.0 +/- 0.0bp
Average Position of motif in Background94.9 +/- 116.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GACCTAAC
TGACCT---
A C G T A C T G C G T A A G T C A G T C A C G T C G T A C G T A A G T C
A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GACCTAAC
TGACCTYA-
A C G T A C T G C G T A A G T C A G T C A C G T C G T A C G T A A G T C
A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GACCTAAC----
TTGACCTANTTATN
A C G T A C G T A C T G C G T A A G T C A G T C A C G T C G T A C G T A A G T C A C G T A C G T A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GACCTAAC-
TGACCTARTT
A C G T A C T G C G T A A G T C A G T C A C G T C G T A C G T A A G T C A C G T
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GACCTAAC-
TGACCTARTT
A C G T A C T G C G T A A G T C A G T C A C G T C G T A C G T A A G T C A C G T
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

FOSL1::JUND(var.2)/MA1143.1/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GACCTAAC
ATGACGTAAC
A C G T A C G T A C T G C G T A A G T C A G T C A C G T C G T A C G T A A G T C
T C G A A G C T A T C G G T C A A G T C C A T G G A C T T G C A C G T A G A T C

NR2C2(var.2)/MA1536.1/Jaspar

Match Rank:7
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GACCTAAC
NTGACCTN--
A C G T A C G T A C T G C G T A A G T C A G T C A C G T C G T A C G T A A G T C
C G T A A G C T T C A G G T C A G T A C T G A C A G C T A G T C A C G T A C G T

RORB/MA1150.1/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GACCTAAC-
NTGACCTAATT
A C G T A C G T A C T G C G T A A G T C A G T C A C G T C G T A C G T A A G T C A C G T
C T A G G A C T C T A G T C G A G A T C T G A C G A C T T G C A G C T A C G A T G C A T

NR2C1/MA1535.1/Jaspar

Match Rank:9
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GACCTAAC
NTGACCTCN-
A C G T A C G T A C T G C G T A A G T C A G T C A C G T C G T A C G T A A G T C
C T A G A G C T A T C G G T C A A G T C G T A C A G C T G A T C C A T G A C G T

RORC/MA1151.1/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GACCTAAC---
TGACCTANTTAN
A C G T A C T G C G T A A G T C A G T C A C G T C G T A C G T A A G T C A C G T A C G T A C G T
G A C T T C A G T G C A G A T C G T A C A G C T T G C A T A G C G C A T C G A T G C T A G A C T