Information for 1-AGCWTGCT (Motif 1)

T C G A A C T G A T G C C G T A A C G T A C T G A G T C A G C T
Reverse Opposite:
C T G A A C T G A G T C C G T A C G A T A T C G G T A C A G C T
p-value:1e-6
log p-value:-1.481e+01
Information Content per bp:1.771
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif66.67%
Number of Background Sequences with motif3843.9
Percentage of Background Sequences with motif4.12%
Average Position of motif in Targets57.5 +/- 39.0bp
Average Position of motif in Background97.7 +/- 91.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-AGCWTGCT------
NNTCCTGCTGTGNNN
A C G T T C G A A C T G A T G C C G T A A C G T A C T G A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AGCWTGCT---
NNCCTGCTGNG
T C G A A C T G A T G C C G T A A C G T A C T G A G T C A G C T A C G T A C G T A C G T
A G T C A T G C T G A C T A G C A G C T T C A G A T G C A C G T T C A G A G C T A T C G

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AGCWTGCT------
TCNCCTGCTGNGNNN
A C G T T C G A A C T G A T G C C G T A A C G T A C T G A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AGCWTGCT------
TNTCCTGCTGTGNNG
A C G T T C G A A C T G A T G C C G T A A C G T A C T G A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.65
Offset:2
Orientation:forward strand
Alignment:AGCWTGCT----
--CCTGCTGAGH
T C G A A C T G A T G C C G T A A C G T A C T G A G T C A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:AGCWTGCT-
----NGCTN
T C G A A C T G A T G C C G T A A C G T A C T G A G T C A G C T A C G T
A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AGCWTGCT--
NNACTTGCCTT
A C G T T C G A A C T G A T G C C G T A A C G T A C T G A G T C A G C T A C G T A C G T
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:8
Score:0.62
Offset:3
Orientation:forward strand
Alignment:AGCWTGCT----
---ATGCCCACC
T C G A A C T G A T G C C G T A A C G T A C T G A G T C A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

Zic2/MA1629.1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AGCWTGCT-----
CCCCCTGCTGTGNN
A C G T T C G A A C T G A T G C C G T A A C G T A C T G A G T C A G C T A C G T A C G T A C G T A C G T A C G T
A G T C A G T C G A T C T A G C G T A C G A C T T C A G A T G C C A G T A T C G C G A T A C T G G T C A A C T G

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.59
Offset:4
Orientation:forward strand
Alignment:AGCWTGCT------
----TGCTGACTCA
T C G A A C T G A T G C C G T A A C G T A C T G A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T C T A G G A T C C A G T A C T G C T G A A T G C G C A T A T G C C T G A