Information for 12-TATTTGGACC (Motif 28)

A C G T C G T A A C G T A C G T A C G T A C T G A C T G C G T A A G T C A G T C
Reverse Opposite:
A C T G A C T G A C G T A G T C A G T C C G T A C G T A C G T A A C G T C G T A
p-value:1e-3
log p-value:-7.205e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif13.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets184.0 +/- 0.0bp
Average Position of motif in Background109.1 +/- 98.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LHX2/MA0700.2/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TATTTGGACC
NNTAATTGGNN-
A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C T G A C T G C G T A A G T C A G T C
C G T A G C A T C G A T C G T A G C T A C G A T C G A T C T A G T A C G G C A T G C A T A C G T

MSX2/MA0708.1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TATTTGGACC
NTAATTGG---
A C G T A C G T C G T A A C G T A C G T A C G T A C T G A C T G C G T A A G T C A G T C
A G C T C A G T T C G A C G T A A C G T C A G T C T A G A T C G A C G T A C G T A C G T

HNF4A(var.2)/MA1494.1/Jaspar

Match Rank:3
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TATTTGGACC-
NTGACCTTTGGACCC
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C T G A C T G C G T A A G T C A G T C A C G T
C A T G G A C T T C A G T G C A G T A C G T A C A G C T G C A T A G C T C T A G C T A G G T C A G T A C A G T C A G T C

MF0008.1_MADS_class/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TATTTGGACC
CCATATATGG---
A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C T G A C T G C G T A A G T C A G T C
G A T C A G T C G C T A C G A T C G T A C G A T C G T A G C A T C T A G C A T G A C G T A C G T A C G T

Msx3/MA0709.1/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TATTTGGACC
NTAATTGN---
A C G T A C G T C G T A A C G T A C G T A C G T A C T G A C T G C G T A A G T C A G T C
A G C T G C A T C T G A C G T A A C G T A G C T C T A G A T C G A C G T A C G T A C G T

MSX1/MA0666.1/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TATTTGGACC
NTAATTGG---
A C G T A C G T C G T A A C G T A C G T A C G T A C T G A C T G C G T A A G T C A G T C
A G T C A C G T T G C A G T C A A C G T A C G T C T A G T A C G A C G T A C G T A C G T

PH0107.1_Msx2/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----TATTTGGACC--
ANCGCTAATTGGTCTNN
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C T G A C T G C G T A A G T C A G T C A C G T A C G T
T C G A C T A G G T A C C T A G G T A C G A C T C G T A C G T A A C G T C G A T C T A G T A C G G A C T A T G C G A C T A C G T A G T C

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:8
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TATTTGGACC
CCATATATGGNA-
A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C T G A C T G C G T A A G T C A G T C
A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A A C G T

LHX9/MA0701.2/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TATTTGGACC
NTAATTAG---
A C G T A C G T C G T A A C G T A C G T A C G T A C T G A C T G C G T A A G T C A G T C
A G C T A G C T G T C A C G T A A C G T C A G T C T G A T C A G A C G T A C G T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TATTTGGACC------
NNATTGGACTTTNGNN
A C G T C G T A A C G T A C G T A C G T A C T G A C T G C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C