Information for 5-GCCCGCAA (Motif 42)

A C T G A G T C A G T C A G T C A C T G A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G A G T C A C T G A C T G A C T G A G T C
p-value:1e-2
log p-value:-5.376e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif9.09%
Number of Background Sequences with motif34.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets88.0 +/- 0.0bp
Average Position of motif in Background118.2 +/- 59.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--GCCCGCAA
CTGCCCGCA-
A C G T A C G T A C T G A G T C A G T C A G T C A C T G A G T C C G T A C G T A
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T

GCM2/MA0767.1/Jaspar

Match Rank:2
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GCCCGCAA-
TACCCGCATN
A C G T A C T G A G T C A G T C A G T C A C T G A G T C C G T A C G T A A C G T
G A C T C T G A A G T C G T A C G T A C T A C G A G T C T C G A A G C T T G C A

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:3
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--GCCCGCAA
TBGCACGCAA
A C G T A C G T A C T G A G T C A G T C A G T C A C T G A G T C C G T A C G T A
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

PB0024.1_Gcm1_1/Jaspar

Match Rank:4
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----GCCCGCAA----
TCGTACCCGCATCATT
A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G T C A C T G A G T C C G T A C G T A A C G T A C G T A C G T A C G T
G C A T T G A C T C A G C G A T T C G A G T A C G T A C G T A C A T C G A G T C C G T A A G C T T A G C C G T A G A C T C A G T

GCM1/MA0646.1/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GCCCGCAA-
GTACCCGCATN
A C G T A C G T A C T G A G T C A G T C A G T C A C T G A G T C C G T A C G T A A C G T
T A C G A G C T T C G A T A G C T G A C G T A C C A T G A G T C C G T A A G C T T C A G

RUNX2/MA0511.2/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GCCCGCAA
AAACCGCAA
A C G T A C T G A G T C A G T C A G T C A C T G A G T C C G T A C G T A
G C T A C T G A G T C A A G T C A G T C C T A G A G T C T G C A T C G A

PB0164.1_Smad3_2/Jaspar

Match Rank:7
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GCCCGCAA-----
TACGCCCCGCCACTCTG
A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G T C A C T G A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:8
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GCCCGCAA
TWVGGTCCGC--
A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G T C A C T G A G T C C G T A C G T A
A G C T C G A T T A C G A T C G A T C G C A G T A G T C A G T C A C T G T A G C A C G T A C G T

PB0201.1_Zfp281_2/Jaspar

Match Rank:9
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----GCCCGCAA----
AGGAGACCCCCAATTTG
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G T C A C T G A G T C C G T A C G T A A C G T A C G T A C G T A C G T
C G T A C A T G C A T G C G T A C A T G C T G A T G A C G T A C T A G C A G T C G T A C G C T A G C T A C G A T C G A T C G A T T C A G

PB0008.1_E2F2_1/Jaspar

Match Rank:10
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------GCCCGCAA-
ATAAAGGCGCGCGAT
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G T C A C T G A G T C C G T A C G T A A C G T
C T G A G C A T C G T A G C T A C T G A T A C G A T C G T G A C A T C G A T G C A T C G G A T C T A C G G C T A G C A T