Information for 20-CACAAATAATTC (Motif 32)

A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A A C G T A C G T A G T C
Reverse Opposite:
A C T G C G T A C G T A A C G T A C G T C G T A A C G T A C G T A C G T A C T G A C G T A C T G
p-value:1e-3
log p-value:-7.890e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif7.14%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets170.0 +/- 0.0bp
Average Position of motif in Background171.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0010.1_Homeobox_class/Jaspar

Match Rank:1
Score:0.74
Offset:4
Orientation:forward strand
Alignment:CACAAATAATTC
----AATAATT-
A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A A C G T A C G T A G T C
A C G T A C G T A C G T A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T A C G T

PH0008.1_Barx2/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CACAAATAATTC----
NANAANTAATTANTTA
A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A A C G T A C G T A G T C A C G T A C G T A C G T A C G T
G A C T C T G A G A C T G T C A T C G A A G T C G A C T G T C A G C T A C A G T C A G T C T G A T G A C A G C T C G A T C G T A

POU4F1/MA0790.1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CACAAATAATTC--
CATTAATTATTCAT
A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A A C G T A C G T A G T C A C G T A C G T
G T A C C T G A A G C T G C A T G C T A G C T A G C A T G C A T C G T A C G A T C A G T G A T C C T G A A G C T

POU4F3/MA0791.1/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CACAAATAATTC--
CTCATTAATTATGCAT
A C G T A C G T A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A A C G T A C G T A G T C A C G T A C G T
A G T C C A G T G T A C C T G A G A C T G C A T G C T A G C T A G C A T G C A T G C T A C G A T C A T G G A T C T C G A G A C T

PBX2/MA1113.2/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CACAAATAATTC
GTCATAAATCATT-
A C G T A C G T A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A A C G T A C G T A G T C
T C A G G A C T G T A C C T G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G A C T G C A T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:6
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CACAAATAATTC
AAACAGACAAAGGAAT-
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A A C G T A C G T A G T C
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CACAAATAATTC-
-ATGCATAATTCA
A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A A C G T A C G T A G T C A C G T
A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CACAAATAATTC
NNCCATAAATCATNN
A C G T A C G T A C G T A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A A C G T A C G T A G T C
C T G A T C A G G A T C G T A C T C G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G C A T G C A T G A C T

PH0108.1_Msx3/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CACAAATAATTC----
CAAAACCAATTAATTT
A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A A C G T A C G T A G T C A C G T A C G T A C G T A C G T
T G A C T C G A G T C A C T G A T C G A A T G C A G T C C T G A G T C A C G A T G A C T C G T A C T G A A C G T G A C T G C A T

PB0165.1_Sox11_2/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CACAAATAATTC-
NNCNNAACAATTNT
A C G T A G T C C G T A A G T C C G T A C G T A C G T A A C G T C G T A C G T A A C G T A C G T A G T C A C G T
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T