Information for 9-GAAGACACACGA (Motif 11)

A C T G C G T A C G T A A C T G C G T A A G T C C G T A A G T C C G T A A G T C A C T G C G T A
Reverse Opposite:
A C G T A G T C A C T G A C G T A C T G A C G T A C T G A C G T A G T C A C G T A C G T A G T C
p-value:1e-4
log p-value:-9.422e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets110.0 +/- 0.0bp
Average Position of motif in Background58.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:1
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GAAGACACACGA-
---GTCACATGAY
A C T G C G T A C G T A A C T G C G T A A G T C C G T A A G T C C G T A A G T C A C T G C G T A A C G T
A C G T A C G T A C G T T C A G G A C T G T A C G T C A A G T C T C G A G C A T A T C G T C G A A G T C

Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer

Match Rank:2
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GAAGACACACGA---
---NHRTCACGACDN
A C T G C G T A C G T A A C T G C G T A A G T C C G T A A G T C C G T A A G T C A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T C A G G C T A T C A G C A G T T G A C G T C A A G T C A T C G T G C A G T A C C A G T G A T C

FOXH1/MA0479.1/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GAAGACACACGA
TCCAATCCACA---
A C G T A C G T A C T G C G T A C G T A A C T G C G T A A G T C C G T A A G T C C G T A A G T C A C T G C G T A
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A A C G T A C G T A C G T

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GAAGACACACGA--------
GAAGTANCACGAATNMRAGT
A C T G C G T A C G T A A C T G C G T A A G T C C G T A A G T C C G T A A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T

GLI2/MA0734.2/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GAAGACACACGA--
AGACCACCCACGTCG
A C G T A C T G C G T A C G T A A C T G C G T A A G T C C G T A A G T C C G T A A G T C A C T G C G T A A C G T A C G T
T G C A A C T G T G C A A G T C A G T C G T C A A G T C G T A C G T A C C T G A G T A C T A C G C G A T G A T C A T C G

USF2/MA0526.3/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GAAGACACACGA---
-NNGTCACATGACNN
A C T G C G T A C G T A A C T G C G T A A G T C C G T A A G T C C G T A A G T C A C T G C G T A A C G T A C G T A C G T
A C G T C G T A C T A G T C A G A G C T T A G C G T C A A G T C T C G A C A G T T A C G T C G A A G T C G A T C G T C A

USF1/MA0093.3/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GAAGACACACGA---
-NNGTCACATGACNN
A C T G C G T A C G T A A C T G C G T A A G T C C G T A A G T C C G T A A G T C A C T G C G T A A C G T A C G T A C G T
A C G T C T G A C T A G T C A G A G C T T A G C G T C A A G T C T C G A C A G T A T C G T C G A A G T C G A T C G T C A

PB0166.1_Sox12_2/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GAAGACACACGA--
AAACAGACAAAGGAAT
A C G T A C G T A C T G C G T A C G T A A C T G C G T A A G T C C G T A A G T C C G T A A G T C A C T G C G T A A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

GLI3/MA1491.1/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GAAGACACACGA--
AGACCACCCACGTCG
A C G T A C T G C G T A C G T A A C T G C G T A A G T C C G T A A G T C C G T A A G T C A C T G C G T A A C G T A C G T
T G C A A C T G T G C A T G A C T G A C G T C A T A G C G T A C G T A C C T G A G T A C T A C G C G A T G A T C A T C G

POL008.1_DCE_S_I/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GAAGACACACGA
NGAAGC-------
A C G T A C T G C G T A C G T A A C T G C G T A A G T C C G T A A G T C C G T A A G T C A C T G C G T A
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T