Information for 1-AATGTTACGA (Motif 2)

C G T A C G T A A C G T A C T G A C G T A C G T C G T A A G T C A C T G C G T A
Reverse Opposite:
A C G T A G T C A C T G A C G T C G T A C G T A A G T C C G T A A C G T A C G T
p-value:1e-5
log p-value:-1.189e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets17.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa11/MA0911.1/Jaspar

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:AATGTTACGA--
ANTTTTACGACC
C G T A C G T A A C G T A C T G A C G T A C G T C G T A A G T C A C T G C G T A A C G T A C G T
G C T A C G T A C G A T C G A T G C A T G C A T G C T A G A T C C T A G T C G A A G T C G A T C

DMRTA2/MA1478.1/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:AATGTTACGA--
AATGTAACAATT
C G T A C G T A A C G T A C T G A C G T A C G T C G T A A G T C A C T G C G T A A C G T A C G T
T G C A G C T A G C A T C T A G G A C T C G T A C G T A T G A C T C G A C G T A G C A T C G A T

HOXB9/MA1503.1/Jaspar

Match Rank:3
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:AATGTTACGA-
-NTTTTACGAC
C G T A C G T A A C G T A C T G A C G T A C G T C G T A A G T C A C T G C G T A A C G T
A C G T C T G A C G A T C A G T A C G T C G A T G T C A A G T C A C T G C T G A A G T C

PH0048.1_Hoxa13/Jaspar

Match Rank:4
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-AATGTTACGA-----
ANATTTTACGAGNNNN
A C G T C G T A C G T A A C G T A C T G A C G T A C G T C G T A A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

HOXC12/MA0906.1/Jaspar

Match Rank:5
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:AATGTTACGA--
-NTTTTACGACC
C G T A C G T A A C G T A C T G A C G T A C G T C G T A A G T C A C T G C G T A A C G T A C G T
A C G T C G A T C A G T C G A T G C A T C G A T T C G A A G T C C A T G C T G A A G T C G A T C

HOXC9/MA0485.2/Jaspar

Match Rank:6
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:AATGTTACGA-
-NTTTTACGAC
C G T A C G T A A C G T A C T G A C G T A C G T C G T A A G T C A C T G C G T A A C G T
A C G T C T G A C G A T A C G T A C G T C G A T G T C A A G T C A C T G C T G A A G T C

PH0077.1_Hoxd12/Jaspar

Match Rank:7
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--AATGTTACGA-----
NNNATTTTACGACNNTN
A C G T A C G T C G T A C G T A A C G T A C T G A C G T A C G T C G T A A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G T C A C G T A C T A G C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T A G

PH0068.1_Hoxc13/Jaspar

Match Rank:8
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-AATGTTACGA-----
NAATTTTACGAGNTNN
A C G T C G T A C G T A A C G T A C T G A C G T A C G T C G T A A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

HOXD10/MA1506.1/Jaspar

Match Rank:9
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:AATGTTACGA--
-NTTTTACGACC
C G T A C G T A A C G T A C T G A C G T A C G T C G T A A G T C A C T G C G T A A C G T A C G T
A C G T C T A G C G A T C A G T A C G T G C A T G T C A A G T C A C T G T C G A A G T C A G T C

HOXD11/MA0908.1/Jaspar

Match Rank:10
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:AATGTTACGA-
-NTTTTACGAC
C G T A C G T A A C G T A C T G A C G T A C G T C G T A A G T C A C T G C G T A A C G T
A C G T C G A T C G A T C G A T C G A T C G A T C G T A A G T C C T A G C G T A A G T C