Information for 3-CGTCCATGGC (Motif 8)

A G T C A C T G A C G T A G T C A G T C C G T A A C G T A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C C G T A A C G T A C T G A C T G C G T A A G T C A C T G
p-value:1e-4
log p-value:-9.666e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets80.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.2/Jaspar

Match Rank:1
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CGTCCATGGC----
---AGATGGCGGCG
A G T C A C T G A C G T A G T C A G T C C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T C A T A C G T C G A A G C T T A C G C T A G G A T C A T C G T A C G G T A C T A C G

RFX3/MA0798.2/Jaspar

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CGTCCATGGC-----
-TNCCATAGCAACNN
A G T C A C T G A C G T A G T C A G T C C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T G A C T C A T G A G T C G A T C G T C A A G C T C T G A C T A G G A T C C T G A T C G A G A T C T G A C T C A G

ZNF16/MA1654.1/Jaspar

Match Rank:3
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CGTCCATGGC--------
AAAACCTTCCATGGCTCCCTATT
A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T A G T C A G T C C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T C G A T C G A T G C A T C G A G A T C G A T C G A C T A G C T A G T C G T A C C T G A A C G T C T A G C T A G G A T C A G C T A T G C G T A C G A T C G A C T T G C A A G C T A C G T

NFIC/MA0161.2/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CGTCCATGGC---
--TACTTGGCAGA
A G T C A C T G A C G T A G T C A G T C C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T
A C G T A C G T G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CGTCCATGGC-
-GTTAATGGCC
A G T C A C T G A C G T A G T C A G T C C G T A A C G T A C T G A C T G A G T C A C G T
A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

NR5A1/MA1540.1/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CGTCCATGGC
NTGACCTTGAN
A C G T A G T C A C T G A C G T A G T C A G T C C G T A A C G T A C T G A C T G A G T C
C T A G G A C T T C A G C T G A A G T C G T A C G C A T G A C T T A C G C T G A T G A C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CGTCCATGGC----
TTGCCATGGCAACN
A G T C A C T G A C G T A G T C A G T C C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CGTCCATGGC------------
MACCTTCYATGGCTCCCTAKTGCCY
A C G T A C G T A C G T A G T C A C T G A C G T A G T C A G T C C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G C A T G C A A G T C A G T C G A C T C A G T A T G C G A T C C T G A A C G T C T A G C T A G A G T C A C G T A G T C A G T C A G T C G A C T C G T A A C G T A G C T C T A G G A T C G A T C G A T C

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CGTCCATGGC---
----NTTGGCANN
A G T C A C T G A C G T A G T C A G T C C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

RFX1/MA0509.2/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CGTCCATGGC-----
-TNCCATAGCAACNN
A G T C A C T G A C G T A G T C A G T C C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T G A C T C A T G A G T C G A T C G T C A G A C T T C G A C T A G G A T C C T G A T C G A G A T C G T C A T C A G