Information for 13-TCACCTAYCTAC (Motif 22)

C G A T A G T C C G T A A G T C A G T C A C G T C T G A A G T C A G T C A C G T G T C A A G T C
Reverse Opposite:
A C T G A C G T C G T A A C T G C T A G A G C T C G T A C T A G A C T G A C G T C T A G C G T A
p-value:1e-5
log p-value:-1.301e+01
Information Content per bp:1.904
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.38%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets109.6 +/- 37.9bp
Average Position of motif in Background155.4 +/- 50.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.75
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TCACCTAYCTAC-
TTGACCTANTTATN
A C G T C G A T A G T C C G T A A G T C A G T C A C G T C T G A A G T C A G T C A C G T G T C A A G T C A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RORC/MA1151.1/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TCACCTAYCTAC
TGACCTANTTAN
C G A T A G T C C G T A A G T C A G T C A C G T C T G A A G T C A G T C A C G T G T C A A G T C
G A C T T C A G T G C A G A T C G T A C A G C T T G C A T A G C G C A T C G A T G C T A G A C T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TCACCTAYCTAC
TGACCTARTT--
C G A T A G T C C G T A A G T C A G T C A C G T C T G A A G T C A G T C A C G T G T C A A G T C
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TCACCTAYCTAC
TGACCTARTT--
C G A T A G T C C G T A A G T C A G T C A C G T C T G A A G T C A G T C A C G T G T C A A G T C
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T A C G T

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TCACCTAYCTAC
BTGACCTAVTTW-
A C G T C G A T A G T C C G T A A G T C A G T C A C G T C T G A A G T C A G T C A C G T G T C A A G T C
A G T C A C G T T C A G T C G A A G T C A G T C A G C T C T G A T C A G C G A T G C A T G C A T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TCACCTAYCTAC
TGACACCT------
A C G T A C G T C G A T A G T C C G T A A G T C A G T C A C G T C T G A A G T C A G T C A C G T G T C A A G T C
G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T

RORB/MA1150.1/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TCACCTAYCTAC
NTGACCTAATT--
A C G T C G A T A G T C C G T A A G T C A G T C A C G T C T G A A G T C A G T C A C G T G T C A A G T C
C T A G G A C T C T A G T C G A G A T C T G A C G A C T T G C A G C T A C G A T G C A T A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TCACCTAYCTAC
NNACTTACCTN-
C G A T A G T C C G T A A G T C A G T C A C G T C T G A A G T C A G T C A C G T G T C A A G T C
C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G A C G T

ZEB1/MA0103.3/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TCACCTAYCTAC
CCCACCTGCGC--
A C G T C G A T A G T C C G T A A G T C A G T C A C G T C T G A A G T C A G T C A C G T G T C A A G T C
A T G C A T G C A G T C C T G A A G T C T A G C A G C T T C A G A T G C T A C G A T G C A C G T A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TCACCTAYCTAC
GCACGTACCC--
C G A T A G T C C G T A A G T C A G T C A C G T C T G A A G T C A G T C A C G T G T C A A G T C
C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C A C G T A C G T