Information for 20-AATAAAGCATGG (Motif 26)

C G T A C G T A A C G T C G T A C G T A C G T A A C T G A G T C C G T A A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A A C G T A C T G A G T C A C G T A C G T A C G T C G T A A C G T A C G T
p-value:1e-3
log p-value:-7.694e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif6.25%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.0 +/- 0.0bp
Average Position of motif in Background105.6 +/- 4.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX2/MA1113.2/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AATAAAGCATGG
GTCATAAATCATT-
A C G T A C G T C G T A C G T A A C G T C G T A C G T A C G T A A C T G A G T C C G T A A C G T A C T G A C T G
T C A G G A C T G T A C C T G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G A C T G C A T A C G T

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---AATAAAGCATGG
NNCCATAAATCATNN
A C G T A C G T A C G T C G T A C G T A A C G T C G T A C G T A C G T A A C T G A G T C C G T A A C G T A C T G A C T G
C T G A T C A G G A T C G T A C T C G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G C A T G C A T G A C T

PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer

Match Rank:3
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:AATAAAGCATGG------
---AAAACCTGGANHGGR
C G T A C G T A A C G T C G T A C G T A C G T A A C T G A G T C C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C T G A T C G A T C G A A G T C T G A C G A C T A C T G C T A G G T C A T A G C G C A T T C A G C T A G T C A G

HOXD13/MA0909.2/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AATAAAGCATGG
CCCAATAAAAC----
A C G T A C G T A C G T C G T A C G T A A C G T C G T A C G T A C G T A A C T G A G T C C G T A A C G T A C T G A C T G
T A G C T A G C A G T C G T C A C T G A C G A T C G T A C T G A G T C A T G C A T G A C A C G T A C G T A C G T A C G T

CDX2/MA0465.2/Jaspar

Match Rank:5
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----AATAAAGCATGG
AAGCAATAAAAA----
A C G T A C G T A C G T A C G T C G T A C G T A A C G T C G T A C G T A C G T A A C T G A G T C C G T A A C G T A C T G A C T G
C T G A C G T A C T A G G A T C G T C A C T G A A G C T C G T A C G T A G C T A C G T A G C T A A C G T A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AATAAAGCATGG
NGYCATAAAWCH---
A C G T A C G T A C G T C G T A C G T A A C G T C G T A C G T A C G T A A C T G A G T C C G T A A C G T A C T G A C T G
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T A C G T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AATAAAGCATGG
ATGAATWATTCATGA
A C G T A C G T A C G T C G T A C G T A A C G T C G T A C G T A C G T A A C T G A G T C C G T A A C G T A C T G A C T G
G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A

HOXA13/MA0650.2/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AATAAAGCATGG
CCCAATAAAAC----
A C G T A C G T A C G T C G T A C G T A A C G T C G T A C G T A C G T A A C T G A G T C C G T A A C G T A C T G A C T G
T G A C T A G C A G T C G T C A C G T A A C G T C T G A C T G A C G T A G T C A G T A C A C G T A C G T A C G T A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:9
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AATAAAGCATGG
TGAATTATGCAT--
A C G T A C G T C G T A C G T A A C G T C G T A C G T A C G T A A C T G A G T C C G T A A C G T A C T G A C T G
C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T A C G T A C G T

SOX10/MA0442.2/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AATAAAGCATGG
AAAACAAAGAA---
A C G T A C G T C G T A C G T A A C G T C G T A C G T A C G T A A C T G A G T C C G T A A C G T A C T G A C T G
C T G A C T G A T G C A G C T A A G T C C G T A G C T A G C T A A C T G T C G A T G C A A C G T A C G T A C G T