Information for 2-GCCATCCATACC (Motif 4)

A C T G A G T C A G T C C G T A A C G T A G T C A G T C C G T A A C G T C G T A A G T C A G T C
Reverse Opposite:
A C T G A C T G A C G T C G T A A C G T A C T G A C T G C G T A A C G T A C T G A C T G A G T C
p-value:1e-4
log p-value:-1.060e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets140.0 +/- 0.0bp
Average Position of motif in Background72.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.2/Jaspar

Match Rank:1
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GCCATCCATACC
CGCCGCCATNN-----
A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C G T A G T C A G T C C G T A A C G T C G T A A G T C A G T C
A T G C C A T G A T G C T A G C C T A G A G T C A T G C T C G A A G C T A T G C C A G T A C G T A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----GCCATCCATACC
ACTATGCCAACCTACC-
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C G T A G T C A G T C C G T A A C G T C G T A A G T C A G T C
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GCCATCCATACC
GYCATCMATCAT
A C T G A G T C A G T C C G T A A C G T A G T C A G T C C G T A A C G T C G T A A G T C A G T C
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:4
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GCCATCCATACC
-DGATCRATAN-
A C T G A G T C A G T C C G T A A C G T A G T C A G T C C G T A A C G T C G T A A G T C A G T C
A C G T C T A G C T A G C T G A A C G T A G T C C T A G C G T A A C G T G T C A G A T C A C G T

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GCCATCCATACC
-YCATCMATCA-
A C T G A G T C A G T C C G T A A C G T A G T C A G T C C G T A A C G T C G T A A G T C A G T C
A C G T G A T C G T A C C T G A A C G T G A T C G T C A C T G A A C G T G A T C G C T A A C G T

CUX1/MA0754.1/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GCCATCCATACC
-TAATCGATAA-
A C T G A G T C A G T C C G T A A C G T A G T C A G T C C G T A A C G T C G T A A G T C A G T C
A C G T G A C T C T G A C T G A A G C T A G T C T C A G C G T A G C A T T G C A G T C A A C G T

CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GCCATCCATACC
NTNATCGATA--
A C T G A G T C A G T C C G T A A C G T A G T C A G T C C G T A A C G T C G T A A G T C A G T C
G C A T A G C T C A G T T C G A A G C T G A T C C T A G T C G A A C G T T G C A A C G T A C G T

TEAD3/MA0808.1/Jaspar

Match Rank:8
Score:0.54
Offset:5
Orientation:forward strand
Alignment:GCCATCCATACC-
-----ACATTCCA
A C T G A G T C A G T C C G T A A C G T A G T C A G T C C G T A A C G T C G T A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T C T G A T G A C C G T A A C G T C G A T A G T C A G T C C G T A

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GCCATCCATACC--
---NNACTTACCTN
A C T G A G T C A G T C C G T A A C G T A G T C A G T C C G T A A C G T C G T A A G T C A G T C A C G T A C G T
A C G T A C G T A C G T C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GCCATCCATACC
ATGCCAACC-----
A C G T A C G T A C T G A G T C A G T C C G T A A C G T A G T C A G T C C G T A A C G T C G T A A G T C A G T C
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T A C G T