Information for 2-AATTTGAG (Motif 14)

C G T A C T G A A C G T A C G T C G A T A C T G C T G A C T A G
Reverse Opposite:
A G T C A G C T A G T C C G T A T G C A C G T A A G C T A C G T
p-value:1e-6
log p-value:-1.485e+01
Information Content per bp:1.839
Number of Target Sequences with motif102.0
Percentage of Target Sequences with motif13.44%
Number of Background Sequences with motif3882.0
Percentage of Background Sequences with motif8.07%
Average Position of motif in Targets92.9 +/- 55.6bp
Average Position of motif in Background100.8 +/- 56.2bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX4/MA0068.2/Jaspar

Match Rank:1
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--AATTTGAG
CTAATTAG--
A C G T A C G T C G T A C T G A A C G T A C G T C G A T A C T G C T G A C T A G
A G T C C A G T C G T A G T C A A C G T C G A T G T C A T C A G A C G T A C G T

VSX1/MA0725.1/Jaspar

Match Rank:2
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--AATTTGAG
NTAATTAG--
A C G T A C G T C G T A C T G A A C G T A C G T C G A T A C T G C T G A C T A G
T G C A G A C T G T C A C T G A A G C T C A G T C T G A C T A G A C G T A C G T

VSX2/MA0726.1/Jaspar

Match Rank:3
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--AATTTGAG
NTAATTAG--
A C G T A C G T C G T A C T G A A C G T A C G T C G A T A C T G C T G A C T A G
T G A C G A C T C G T A C T G A A C G T C G A T C T G A T C A G A C G T A C G T

ARGFX/MA1463.1/Jaspar

Match Rank:4
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---AATTTGAG
TTTAATTAGN-
A C G T A C G T A C G T C G T A C T G A A C G T A C G T C G A T A C T G C T G A C T A G
C A G T G A C T G A C T C T G A C G T A A C G T C A G T C T G A C T A G G T C A A C G T

NOTO/MA0710.1/Jaspar

Match Rank:5
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---AATTTGAG
NNTAATTAGN-
A C G T A C G T A C G T C G T A C T G A A C G T A C G T C G A T A C T G C T G A C T A G
T A C G A G T C G A C T G T C A C G T A A C G T C A G T C G T A C T A G A T G C A C G T

TLX2/MA1577.1/Jaspar

Match Rank:6
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--AATTTGAG
CTAATTAG--
A C G T A C G T C G T A C T G A A C G T A C G T C G A T A C T G C T G A C T A G
A G T C G A C T C T G A C G T A A C G T A C G T C G T A T C A G A C G T A C G T

ALX3/MA0634.1/Jaspar

Match Rank:7
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---AATTTGAG
NNTAATTAGA-
A C G T A C G T A C G T C G T A C T G A A C G T A C G T C G A T A C T G C T G A C T A G
A C G T A G C T C G A T C T G A C G T A C A G T G A C T C T G A T C A G C T G A A C G T

LHX9/MA0701.2/Jaspar

Match Rank:8
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--AATTTGAG
NTAATTAG--
A C G T A C G T C G T A C T G A A C G T A C G T C G A T A C T G C T G A C T A G
A G C T A G C T G T C A C G T A A C G T C A G T C T G A T C A G A C G T A C G T

PRRX2/MA0075.3/Jaspar

Match Rank:9
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--AATTTGAG
NTAATTAG--
A C G T A C G T C G T A C T G A A C G T A C G T C G A T A C T G C T G A C T A G
G A C T A G C T C G T A C G T A A C G T A C G T T C G A T C A G A C G T A C G T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:10
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-AATTTGAG
TAATTAGN-
A C G T C G T A C T G A A C G T A C G T C G A T A C T G C T G A C T A G
A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C A C G T