Information for 9-TCATCAAATAAC (Motif 11)

A C G T A G T C C G T A A C G T A G T C C G T A C G T A C G T A A C G T C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T C G T A A C G T A C G T A C G T A C T G C G T A A C G T A C T G C G T A
p-value:1e-4
log p-value:-1.074e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PHOX2B/MA0681.2/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TCATCAAATAAC--
TTTAATCAAATTATAT
A C G T A C G T A C G T A G T C C G T A A C G T A G T C C G T A C G T A C G T A A C G T C G T A C G T A A G T C A C G T A C G T
C G A T G C A T G C A T C G T A C G T A G C A T G A T C G C T A G C T A C G T A C G A T G C A T C G T A C G A T G C T A G C A T

PH0134.1_Pbx1/Jaspar

Match Rank:2
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----TCATCAAATAAC-
TCACCCATCAATAAACA
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A G T C C G T A C G T A C G T A A C G T C G T A C G T A A G T C A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TCATCAAATAAC
TAATCAATTA--
A C G T A G T C C G T A A C G T A G T C C G T A C G T A C G T A A C G T C G T A C G T A A G T C
C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A A C G T A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TCATCAAATAAC
GTCGTAAAAT---
A C G T A C G T A G T C C G T A A C G T A G T C C G T A C G T A C G T A A C G T C G T A C G T A A G T C
T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T A C G T A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TCATCAAATAAC
--ATTAAA----
A C G T A G T C C G T A A C G T A G T C C G T A C G T A C G T A A C G T C G T A C G T A A G T C
A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T

PB0082.1_Tcf3_1/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TCATCAAATAAC--
TATAGATCAAAGGAAAA
A C G T A C G T A C G T A C G T A G T C C G T A A C G T A G T C C G T A C G T A C G T A A C G T C G T A C G T A A G T C A C G T A C G T
G A C T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G C T A G C T A G C T A

Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TCATCAAATAAC
TAATCHGATTAC
A C G T A G T C C G T A A C G T A G T C C G T A C G T A C G T A A C G T C G T A C G T A A G T C
G C A T C T G A T G C A G A C T A G T C G T A C T C A G C G T A A G C T A C G T G C T A G T A C

PB0083.1_Tcf7_1/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TCATCAAATAAC--
TATAGATCAAAGGAAAA
A C G T A C G T A C G T A C G T A G T C C G T A A C G T A G T C C G T A C G T A C G T A A C G T C G T A C G T A A G T C A C G T A C G T
A C G T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C A T G C T A

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TCATCAAATAAC--
NNNAGATCAAAGGANNN
A C G T A C G T A C G T A C G T A G T C C G T A A C G T A G T C C G T A C G T A C G T A A C G T C G T A C G T A A G T C A C G T A C G T
A C G T G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C T A G C A T

PH0051.1_Hoxa4/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TCATCAAATAAC---
GATTATTAATTAACTTG
A C G T A C G T A C G T A G T C C G T A A C G T A G T C C G T A C G T A C G T A A C G T C G T A C G T A A G T C A C G T A C G T A C G T
C T A G C T G A G A C T G A C T T C G A G C A T G A C T G T C A C G T A G A C T A C G T C T G A C G T A A G T C C A G T A G C T A C T G