Information for 2-GGSAMAGCTCWC (Motif 3)

A T C G A C T G A T C G C T G A G T C A C G T A A C T G A G T C A G C T A G T C C G T A A G T C
Reverse Opposite:
A C T G C G A T A C T G C T G A C T A G A G T C A C G T A C G T A G C T A T G C G T A C A T G C
p-value:1e-5
log p-value:-1.330e+01
Information Content per bp:1.811
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif27.27%
Number of Background Sequences with motif181.2
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets119.0 +/- 45.0bp
Average Position of motif in Background104.9 +/- 83.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0053.1_Rara_1/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-GGSAMAGCTCWC---
TCTCAAAGGTCACCTG
A C G T A T C G A C T G A T C G C T G A G T C A C G T A A C T G A G T C A G C T A G T C C G T A A G T C A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

NR1I3/MA1534.1/Jaspar

Match Rank:2
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:GGSAMAGCTCWC
---AAAGTTCAT
A T C G A C T G A T C G C T G A G T C A C G T A A C T G A G T C A G C T A G T C C G T A A G T C
A C G T A C G T A C G T C G T A C T G A C T G A A C T G A C G T C A G T A G T C C T G A G A C T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GGSAMAGCTCWC
ANGNAAAGGTCA-
A C G T A T C G A C T G A T C G C T G A G T C A C G T A A C T G A G T C A G C T A G T C C G T A A G T C
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GGSAMAGCTCWC---
TCTCAAAGGTCACGAG
A C G T A T C G A C T G A T C G C T G A G T C A C G T A A C T G A G T C A G C T A G T C C G T A A G T C A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer

Match Rank:5
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GGSAMAGCTCWC
VNAGGKCAAAGGTCA-
A C G T A C G T A C G T A C G T A T C G A C T G A T C G C T G A G T C A C G T A A C T G A G T C A G C T A G T C C G T A A G T C
T G A C C G A T C T G A C T A G C T A G A C G T A T G C T G C A T C G A C T G A C T A G C A T G A C G T A G T C C G T A A C G T

NR4A1/MA1112.2/Jaspar

Match Rank:6
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GGSAMAGCTCWC-
-TTAAAGGTCAAA
A T C G A C T G A T C G C T G A G T C A C G T A A C T G A G T C A G C T A G T C C G T A A G T C A C G T
A C G T C A G T G C A T C T G A C T G A T C G A C A T G C A T G A C G T A G T C C T G A T C G A C T G A

Nr2f6/MA0677.1/Jaspar

Match Rank:7
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GGSAMAGCTCWC
GAGGTCAAAGGTCA-
A C G T A C G T A C G T A T C G A C T G A T C G C T G A G T C A C G T A A C T G A G T C A G C T A G T C C G T A A G T C
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A A C G T

PPARD/MA1550.1/Jaspar

Match Rank:8
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GGSAMAGCTCWC
AGGGGTCAAAGGTCAA
A C G T A C G T A C G T A C G T A T C G A C T G A T C G C T G A G T C A C G T A A C T G A G T C A G C T A G T C C G T A A G T C
G C T A T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C C T G A G T C A

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.63
Offset:4
Orientation:forward strand
Alignment:GGSAMAGCTCWC
----AAGGTCAC
A T C G A C T G A T C G C T G A G T C A C G T A A C T G A G T C A G C T A G T C C G T A A G T C
A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

Rxra/MA0512.2/Jaspar

Match Rank:10
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GGSAMAGCTCWC
GGGGTCAAAGGTCA-
A C G T A C G T A C G T A T C G A C T G A T C G C T G A G T C A C G T A A C T G A G T C A G C T A G T C C G T A A G T C
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A A C G T