Information for 1-TACTTTTATAGA (Motif 1)

A C G T C G T A A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T C G T A A C G T C G T A C G T A C G T A C G T A A C T G A C G T C G T A
p-value:1e-13
log p-value:-3.117e+01
Information Content per bp:1.530
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets163.4 +/- 15.6bp
Average Position of motif in Background60.8 +/- 1.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.72
Offset:1
Orientation:forward strand
Alignment:TACTTTTATAGA-
-CCTTTTATAGNC
A C G T C G T A A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G C G T A A C G T
A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----TACTTTTATAGA
NNNNNNCTTTTATAN-
A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G C G T A
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T

TBP/MA0108.2/Jaspar

Match Rank:3
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----TACTTTTATAGA
NNNNNNCTTTTATAN-
A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G C G T A
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:4
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-TACTTTTATAGA---
NNANTTTTATTGGNNN
A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G C G T A A C G T A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

HOXB13/MA0901.2/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TACTTTTATAGA--
NNATTTTATTGGNN
A C G T C G T A A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G C G T A A C G T A C G T
C G T A C G T A C G T A C G A T C G A T C G A T G C A T T G C A G C A T C G A T C T A G C A T G G C A T G C A T

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.64
Offset:3
Orientation:forward strand
Alignment:TACTTTTATAGA-
---TTTTATGGCM
A C G T C G T A A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G C G T A A C G T
A C G T A C G T A C G T C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C

PH0056.1_Hoxa9/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TACTTTTATAGA---
ANTAATTTTATGGCCGN
A C G T A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G C G T A A C G T A C G T A C G T
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T

PH0075.1_Hoxd10/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TACTTTTATAGA---
NTNAATTTTATTGNATT
A C G T A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G C G T A A C G T A C G T A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:9
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TACTTTTATAGA-
---TTTAATTGCN
A C G T C G T A A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G C G T A A C G T
A C G T A C G T A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TACTTTTATAGA-
---TTTTATTRGN
A C G T C G T A A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G C G T A A C G T
A C G T A C G T A C G T C G A T A C G T A C G T G C A T C G T A G A C T C A G T C T A G A T C G G A T C