Information for 1-GTCMAACAAMSS (Motif 1)

A C T G A C G T A T G C G T A C C G T A C G T A A G T C C G T A C G T A G T C A A T G C A T G C
Reverse Opposite:
A T C G A T C G A C G T A C G T A C G T A C T G A C G T A C G T A C T G A T C G C G T A A G T C
p-value:1e-8
log p-value:-1.891e+01
Information Content per bp:1.866
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif17.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets85.0 +/- 39.8bp
Average Position of motif in Background111.7 +/- 94.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX4/MA0867.2/Jaspar

Match Rank:1
Score:0.68
Offset:3
Orientation:forward strand
Alignment:GTCMAACAAMSS-
---GAACAAAGGG
A C T G A C G T A T G C G T A C C G T A C G T A A G T C C G T A C G T A G T C A A T G C A T G C A C G T
A C G T A C G T A C G T C T A G T C G A C G T A A T G C T C G A T C G A G C T A C T A G T C A G T C A G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:2
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GTCMAACAAMSS
--RNAACAATGG
A C T G A C G T A T G C G T A C C G T A C G T A A G T C C G T A C G T A G T C A A T G C A T G C
A C G T A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

SOX10/MA0442.2/Jaspar

Match Rank:3
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GTCMAACAAMSS-
--AAAACAAAGAA
A C T G A C G T A T G C G T A C C G T A C G T A A G T C C G T A C G T A G T C A A T G C A T G C A C G T
A C G T A C G T C T G A C T G A T G C A G C T A A G T C C G T A G C T A G C T A A C T G T C G A T G C A

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:4
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GTCMAACAAMSS
--VRRACAAWGG
A C T G A C G T A T G C G T A C C G T A C G T A A G T C C G T A C G T A G T C A A T G C A T G C
A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

MF0011.1_HMG_class/Jaspar

Match Rank:5
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:GTCMAACAAMSS
----AACAAT--
A C T G A C G T A T G C G T A C C G T A C G T A A G T C C G T A C G T A G T C A A T G C A T G C
A C G T A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GTCMAACAAMSS----
AGAAGAACAAAGGACTA
A C G T A C T G A C G T A T G C G T A C C G T A C G T A A G T C C G T A C G T A G T C A A T G C A T G C A C G T A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox3/MA0514.1/Jaspar

Match Rank:7
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GTCMAACAAMSS
--AAAACAAAGG
A C T G A C G T A T G C G T A C C G T A C G T A A G T C C G T A C G T A G T C A A T G C A T G C
A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:GTCMAACAAMSS
----RACAAWGG
A C T G A C G T A T G C G T A C C G T A C G T A A G T C C G T A C G T A G T C A A T G C A T G C
A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

PB0061.1_Sox11_1/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GTCMAACAAMSS----
ATAAGAACAAAGGACTA
A C G T A C T G A C G T A T G C G T A C C G T A C G T A A G T C C G T A C G T A G T C A A T G C A T G C A C G T A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer

Match Rank:10
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GTCMAACAAMSS-
-BMRVACAAWGGV
A C T G A C G T A T G C G T A C C G T A C G T A A G T C C G T A C G T A G T C A A T G C A T G C A C G T
A C G T A T G C T G A C C T G A T A C G C G T A A G T C C G T A C G T A C G T A C T A G T C A G T G C A