Information for 20-GCAACAAGCT (Motif 33)

A C T G A G T C C G T A C G T A A G T C C G T A C G T A A C T G A G T C A C G T
Reverse Opposite:
C G T A A C T G A G T C A C G T A C G T A C T G A C G T A C G T A C T G A G T C
p-value:1e-2
log p-value:-6.764e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif44.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets103.0 +/- 0.0bp
Average Position of motif in Background104.7 +/- 101.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.68
Offset:4
Orientation:forward strand
Alignment:GCAACAAGCT-
----CAAGCTT
A C T G A G T C C G T A C G T A A G T C C G T A C G T A A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T

SCRT2/MA0744.2/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GCAACAAGCT---
AAAGCAACAGGTGGTT
A C G T A C G T A C G T A C T G A G T C C G T A C G T A A G T C C G T A C G T A A C T G A G T C A C G T A C G T A C G T A C G T
C T G A T C G A C G T A A C T G G A T C G T C A C T G A T A G C G C T A C T A G C A T G G A C T C A T G C A T G G A C T G C A T

MF0011.1_HMG_class/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GCAACAAGCT
--AACAAT--
A C T G A G T C C G T A C G T A A G T C C G T A C G T A A C T G A G T C A C G T
A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T

SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCAACAAGCT
GCAACAGGTG
A C T G A G T C C G T A C G T A A G T C C G T A C G T A A C T G A G T C A C G T
A C T G A G T C G T C A C G T A A G T C C G T A C T A G C T A G G A C T C A T G

RFX7/MA1554.1/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GCAACAAGCT
NTAGCAACG----
A C G T A C G T A C G T A C T G A G T C C G T A C G T A A G T C C G T A C G T A A C T G A G T C A C G T
C T G A G A C T T C G A T A C G G A T C C T G A C T G A A T G C T A C G A C G T A C G T A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GCAACAAGCT
SCCTAGCAACAG---
A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A A G T C C G T A C G T A A C T G A G T C A C G T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T A C G T

RFX1/MA0509.2/Jaspar

Match Rank:7
Score:0.58
Offset:-7
Orientation:reverse strand
Alignment:-------GCAACAAGCT
TNCCATAGCAACNN---
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A A G T C C G T A C G T A A C T G A G T C A C G T
G A C T C A T G A G T C G A T C G T C A G A C T T C G A C T A G G A T C C T G A T C G A G A T C G T C A T C A G A C G T A C G T A C G T

GRHL2/MA1105.2/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCAACAAGCT--
AAAACAGGTTTT
A C T G A G T C C G T A C G T A A G T C C G T A C G T A A C T G A G T C A C G T A C G T A C G T
T G C A T C G A C T G A C T G A T A G C G C T A C T A G T A C G G A C T G A C T A G C T C A G T

Sox5/MA0087.1/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GCAACAAGCT
-NAACAAT--
A C T G A G T C C G T A C G T A A G T C C G T A C G T A A C T G A G T C A C G T
A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T

SCRT1/MA0743.2/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GCAACAAGCT---
AATTCAACAGGTGGTT
A C G T A C G T A C G T A C T G A G T C C G T A C G T A A G T C C G T A C G T A A C T G A G T C A C G T A C G T A C G T A C G T
C G T A C T G A C G A T A C G T G A T C G T C A C T G A A T G C G C T A C T A G C T A G G A C T C A T G C A T G A G C T G C A T