Information for 8-CTAGTCTTAC (Motif 28)

A G T C A C G T C G T A A C T G A C G T A G T C A C G T A C G T C G T A A G T C
Reverse Opposite:
A C T G A C G T C G T A C G T A A C T G C G T A A G T C A C G T C G T A A C T G
p-value:1e-3
log p-value:-7.738e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif3820.4
Percentage of Background Sequences with motif0.86%
Average Position of motif in Targets149.5 +/- 21.5bp
Average Position of motif in Background99.1 +/- 160.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GATA1/MA0035.4/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CTAGTCTTAC
TTCTAATCTAT-
A C G T A C G T A G T C A C G T C G T A A C T G A C G T A G T C A C G T A C G T C G T A A G T C
C G A T G C A T G T A C C G A T C G T A G C T A G C A T G T A C G C A T C G T A G C A T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CTAGTCTTAC---
--NNACTTACCTN
A G T C A C G T C G T A A C T G A C G T A G T C A C G T A C G T C G T A A G T C A C G T A C G T A C G T
A C G T A C G T C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G

MEF2A/MA0052.4/Jaspar

Match Rank:3
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CTAGTCTTAC--
NNTCTATTTTTAGNN
A C G T A C G T A C G T A G T C A C G T C G T A A C T G A C G T A G T C A C G T A C G T C G T A A G T C A C G T A C G T
C G A T C G A T C A G T G A T C G A C T C G T A G C A T G C A T G C A T G C A T G C A T C T G A C T A G G T C A G C T A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CTAGTCTTAC
-TWGTCTGV-
A G T C A C G T C G T A A C T G A C G T A G T C A C G T A C G T C G T A A G T C
A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CTAGTCTTAC----
--TGTCTGDCACCT
A G T C A C G T C G T A A C T G A C G T A G T C A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

MEF2B/MA0660.1/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CTAGTCTTAC-
GCTATTTATAGC
A C G T A G T C A C G T C G T A A C T G A C G T A G T C A C G T A C G T C G T A A G T C A C G T
C A T G A G T C C A G T C G T A C G A T C G A T G C A T C G T A C G A T C T G A C A T G G A T C

MEF2D/MA0773.1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CTAGTCTTAC-
TCTATTTATAGN
A C G T A G T C A C G T C G T A A C T G A C G T A G T C A C G T A C G T C G T A A G T C A C G T
C A G T A G T C A G C T C G T A C G A T G C A T C G A T G C T A C A G T C T G A C T A G G A C T

MEF2C/MA0497.1/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CTAGTCTTAC---
TTCTATTTTTAGNNN
A C G T A C G T A G T C A C G T C G T A A C T G A C G T A G T C A C G T A C G T C G T A A G T C A C G T A C G T A C G T
C G A T C A G T A G T C A G C T C T G A G C A T G C A T G A C T G A C T C G A T C T G A C A T G G T A C G C T A G A C T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:9
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CTAGTCTTAC-
GCTATTTTTAGC
A C G T A G T C A C G T C G T A A C T G A C G T A G T C A C G T A C G T C G T A A G T C A C G T
C A T G A G T C A G C T C G T A C G A T C G A T G C A T G C A T C G A T C T G A C A T G T G A C

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:10
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--CTAGTCTTAC
GKMTCADRTTWC
A C G T A C G T A G T C A C G T C G T A A C T G A C G T A G T C A C G T A C G T C G T A A G T C
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C