Information for 2-CWTGWCAWGAKK (Motif 2)

A G T C C G A T A C G T A C T G C G T A A G T C C T G A C G A T A C T G C G T A A C T G A C G T
Reverse Opposite:
G T C A G T A C A C G T A G T C G C A T A G C T A C T G C G A T A G T C C G T A C G T A A C T G
p-value:1e-6
log p-value:-1.559e+01
Information Content per bp:1.835
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif37.50%
Number of Background Sequences with motif148.6
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets133.0 +/- 27.0bp
Average Position of motif in Background99.3 +/- 87.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEIS3/MA0775.1/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CWTGWCAWGAKK
-TTGACAGG---
A G T C C G A T A C G T A C T G C G T A A G T C C T G A C G A T A C T G C G T A A C T G A C G T
A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CWTGWCAWGAKK
ARNTGACA-----
A C G T A G T C C G A T A C G T A C T G C G T A A G T C C T G A C G A T A C T G C G T A A C T G A C G T
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:3
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CWTGWCAWGAKK
-YTGWCADY---
A G T C C G A T A C G T A C T G C G T A A G T C C T G A C G A T A C T G C G T A A C T G A C G T
A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CWTGWCAWGAKK
-TTGACAG----
A G T C C G A T A C G T A C T G C G T A A G T C C T G A C G A T A C T G C G T A A C T G A C G T
A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CWTGWCAWGAKK
-TTGACAGC---
A G T C C G A T A C G T A C T G C G T A A G T C C T G A C G A T A C T G C G T A A C T G A C G T
A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T

NFIC/MA0161.2/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CWTGWCAWGAKK
TACTTGGCAGA---
A C G T A C G T A G T C C G A T A C G T A C T G C G T A A G T C C T G A C G A T A C T G C G T A A C T G A C G T
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A A C G T A C G T A C G T

CREB1/MA0018.4/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CWTGWCAWGAKK-
NATGACATCANNN
A G T C C G A T A C G T A C T G C G T A A G T C C T G A C G A T A C T G C G T A A C T G A C G T A C G T
C A G T T C G A G C A T A C T G C G T A T A G C T C G A G C A T T G A C G C T A A G C T G T C A C G T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CWTGWCAWGAKK
CTTGGCAA----
A G T C C G A T A C G T A C T G C G T A A G T C C T G A C G A T A C T G C G T A A C T G A C G T
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CWTGWCAWGAKK
VGCTGWCAVB---
A C G T A G T C C G A T A C G T A C T G C G T A A G T C C T G A C G A T A C T G C G T A A C T G A C G T
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CWTGWCAWGAKK
NCGTGACN-----
A C G T A G T C C G A T A C G T A C T G C G T A A G T C C T G A C G A T A C T G C G T A A C T G A C G T
T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T A C G T A C G T A C G T A C G T