Information for 6-CAATAAAAGTTG (Motif 9)

A G T C C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C T G A C G T A C G T A C T G
Reverse Opposite:
A G T C C G T A C G T A A G T C A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C T G
p-value:1e-3
log p-value:-8.937e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets6.0 +/- 0.0bp
Average Position of motif in Background67.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13/MA0901.2/Jaspar

Match Rank:1
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---CAATAAAAGTTG
AACCAATAAAATTT-
A C G T A C G T A C G T A G T C C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C T G A C G T A C G T A C T G
C G T A C G T A G T A C G A T C G C T A C G T A A C G T C G T A G C T A G C T A G C T A G C A T G C A T G C A T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:2
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----CAATAAAAGTTG
AACCCAATAAAATTCG
A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C T G A C G T A C G T A C T G
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

PH0078.1_Hoxd13/Jaspar

Match Rank:3
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----CAATAAAAGTTG
CTACCAATAAAATTCT
A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C T G A C G T A C G T A C T G
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

CDX2/MA0465.2/Jaspar

Match Rank:4
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---CAATAAAAGTTG
AAGCAATAAAAA---
A C G T A C G T A C G T A G T C C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C T G A C G T A C G T A C T G
C T G A C G T A C T A G G A T C G T C A C T G A A G C T C G T A C G T A G C T A C G T A G C T A A C G T A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:5
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----CAATAAAAGTTG-
AATGCAATAAAATTTAT
A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C T G A C G T A C G T A C T G A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

HOXA13/MA0650.2/Jaspar

Match Rank:6
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CAATAAAAGTTG
CCCAATAAAAC---
A C G T A C G T A G T C C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C T G A C G T A C G T A C T G
T G A C T A G C A G T C G T C A C G T A A C G T C T G A C T G A C G T A G T C A G T A C A C G T A C G T A C G T

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CAATAAAAGTTG
NCYAATAAAA----
A C G T A C G T A G T C C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C T G A C G T A C G T A C T G
C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T

HOXD9/MA0913.2/Jaspar

Match Rank:8
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CAATAAAAGTTG
GCAATAAAAC---
A C G T A G T C C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C T G A C G T A C G T A C T G
T C A G A G T C G T C A T C G A C G A T G C T A C G T A C G T A G T C A G A T C A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:9
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----CAATAAAAGTTG
AGAGCCATAAAATTCG
A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C T G A C G T A C G T A C T G
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:10
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----CAATAAAAGTTG
TTCAAAWTAAAAGTC-
A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C T G A C G T A C G T A C T G
C A G T G A C T A G T C G C T A C T G A G T C A C G T A A G C T G T C A C T G A C T G A C T G A A C T G A G C T G A T C A C G T