Information for 4-CTAAGTGCCG (Motif 12)

A G T C A C G T C G T A C G T A A C T G A C G T A C T G A G T C A G T C A C T G
Reverse Opposite:
A G T C A C T G A C T G A G T C C G T A A G T C A C G T A C G T C G T A A C T G
p-value:1e-3
log p-value:-8.407e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif7.14%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets73.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ISL2/MA0914.1/Jaspar

Match Rank:1
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:CTAAGTGCCG
TTAAGTGC--
A G T C A C G T C G T A C G T A A C T G A C G T A C T G A G T C A G T C A C T G
G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C A C G T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:2
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CTAAGTGCCG
CTAATKGV--
A G T C A C G T C G T A C G T A A C T G A C G T A C T G A G T C A G T C A C T G
A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:3
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CTAAGTGCCG
TTAAGTGGT-
A G T C A C G T C G T A C G T A A C T G A C G T A C T G A G T C A G T C A C T G
G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:4
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CTAAGTGCCG
TTAAGTGCTT
A G T C A C G T C G T A C G T A A C T G A C G T A C T G A G T C A G T C A C T G
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:5
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CTAAGTGCCG
TTRAGTGSYK
A G T C A C G T C G T A C G T A A C T G A C G T A C T G A G T C A G T C A C T G
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

PB0150.1_Mybl1_2/Jaspar

Match Rank:6
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CTAAGTGCCG--
CGACCAACTGCCGTG
A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C T G A C G T A C T G A G T C A G T C A C T G A C G T A C G T
A G T C A T C G T G C A G A T C G A T C G C T A G T C A A G T C A G C T A C T G G A T C G T A C C T A G G C A T A C T G

PB0149.1_Myb_2/Jaspar

Match Rank:7
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CTAAGTGCCG---
CGACCAACTGCCATGC
A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C T G A C G T A C T G A G T C A G T C A C T G A C G T A C G T A C G T
A G T C C A T G G T C A A G T C G A T C C G T A G T C A A G T C A G C T T C A G G A T C G A T C C T G A A G C T A T C G A G T C

NKX2-3/MA0672.1/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CTAAGTGCCG
NTCAAGTGGN-
A C G T A G T C A C G T C G T A C G T A A C T G A C G T A C T G A G T C A G T C A C T G
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T

Nkx3-2/MA0122.3/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTAAGTGCCG--
NTTAAGTGGTTNN
A C G T A G T C A C G T C G T A C G T A A C T G A C G T A C T G A G T C A G T C A C T G A C G T A C G T
C G A T G C A T C G A T C T G A C G T A C A T G C G A T C T A G A C T G G C A T G C A T G C T A G C A T

PH0004.1_Nkx3-2/Jaspar

Match Rank:10
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CTAAGTGCCG---
NTNNTTAAGTGGTTANN
A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C T G A C G T A C T G A G T C A G T C A C T G A C G T A C G T A C G T
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G