Information for 2-GAAGAAAGTTGA (Motif 2)

A C T G C G T A C G T A A T C G C G T A G T C A C G T A A T C G A C G T C A G T A C T G C T G A
Reverse Opposite:
A G C T A G T C G T C A C G T A A T G C A C G T A C G T A C G T A T G C C G A T C G A T A G T C
p-value:1e-7
log p-value:-1.633e+01
Information Content per bp:1.801
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif804.1
Percentage of Background Sequences with motif0.59%
Average Position of motif in Targets134.5 +/- 54.1bp
Average Position of motif in Background96.3 +/- 92.4bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MYB/MA0100.3/Jaspar

Match Rank:1
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GAAGAAAGTTGA-
---NNCAGTTGNN
A C T G C G T A C G T A A T C G C G T A G T C A C G T A A T C G A C G T C A G T A C T G C T G A A C G T
A C G T A C G T A C G T C A T G C T G A A G T C T G C A A C T G C G A T G A C T T C A G T C A G C A G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:2
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GAAGAAAGTTGA---
---GWAAYHTGABMC
A C T G C G T A C G T A A T C G C G T A G T C A C G T A A T C G A C G T C A G T A C T G C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:3
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GAAGAAAGTTGA---
---GWAAYHTGAKMC
A C T G C G T A C G T A A T C G C G T A G T C A C G T A A T C G A C G T C A G T A C T G C T G A A C G T A C G T A C G T
A C G T A C G T A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GAAGAAAGTTGA-----
--TGWAAYCTGABACCB
A C T G C G T A C G T A A T C G C G T A G T C A C G T A A T C G A C G T C A G T A C T G C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T A C T G C G T A G T C A C G T A A G C T G A T C A G C T A C T G C G T A A G T C G T C A A G T C A G T C A T C G

NR1I3/MA1534.1/Jaspar

Match Rank:5
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GAAGAAAGTTGA-
----AAAGTTCAT
A C T G C G T A C G T A A T C G C G T A G T C A C G T A A T C G A C G T C A G T A C T G C T G A A C G T
A C G T A C G T A C G T A C G T C G T A C T G A C T G A A C T G A C G T C A G T A G T C C T G A G A C T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GAAGAAAGTTGA
GGAACAAAGR---
A C G T A C T G C G T A C G T A A T C G C G T A G T C A C G T A A T C G A C G T C A G T A C T G C T G A
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:7
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GAAGAAAGTTGA
CANAGNNCAAAGTCCA
A C G T A C G T A C G T A C G T A C T G C G T A C G T A A T C G C G T A G T C A C G T A A T C G A C G T C A G T A C T G C T G A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GAAGAAAGTTGA
--TGGCAGTTGG
A C T G C G T A C G T A A T C G C G T A G T C A C G T A A T C G A C G T C A G T A C T G C T G A
A C G T A C G T G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G

LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GAAGAAAGTTGA
ASATCAAAGG---
A C G T A C T G C G T A C G T A A T C G C G T A G T C A C G T A A T C G A C G T C A G T A C T G C T G A
C T G A A T C G G C T A G C A T T A G C C G T A T C G A C T G A T C A G T A C G A C G T A C G T A C G T

PB0149.1_Myb_2/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GAAGAAAGTTGA---
NNNTGGCAGTTGGTNN
A C G T A C T G C G T A C G T A A T C G C G T A G T C A C G T A A T C G A C G T C A G T A C T G C T G A A C G T A C G T A C G T
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G