Information for 2-TCGTAAAATC (Motif 2)

A C G T A G T C A C T G A C G T C G T A C G T A C G T A C G T A A C G T A G T C
Reverse Opposite:
A C T G C G T A A C G T A C G T A C G T A C G T C G T A A G T C A C T G C G T A
p-value:1e-4
log p-value:-9.937e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets5.0 +/- 0.0bp
Average Position of motif in Background146.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0077.1_Hoxd12/Jaspar

Match Rank:1
Score:0.87
Offset:-5
Orientation:forward strand
Alignment:-----TCGTAAAATC--
CAAGGTCGTAAAATCTT
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T C G T A C G T A C G T A C G T A A C G T A G T C A C G T A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T

HOXB9/MA1503.1/Jaspar

Match Rank:2
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-TCGTAAAATC
GTCGTAAAAT-
A C G T A C G T A G T C A C T G A C G T C G T A C G T A C G T A C G T A A C G T A G T C
T C A G A G C T A G T C T C A G A C G T G C T A C G T A G T C A G C T A G A C T A C G T

HOXC9/MA0485.2/Jaspar

Match Rank:3
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-TCGTAAAATC
GTCGTAAAAT-
A C G T A C G T A G T C A C T G A C G T C G T A C G T A C G T A C G T A A C G T A G T C
T C A G A G C T A G T C C T A G A C G T C G T A C G T A G T C A G C T A G A C T A C G T

HOXC12/MA0906.1/Jaspar

Match Rank:4
Score:0.86
Offset:-2
Orientation:forward strand
Alignment:--TCGTAAAATC
GGTCGTAAAAA-
A C G T A C G T A C G T A G T C A C T G A C G T C G T A C G T A C G T A C G T A A C G T A G T C
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A A C G T

HOXD11/MA0908.1/Jaspar

Match Rank:5
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-TCGTAAAATC
GTCGTAAAAA-
A C G T A C G T A G T C A C T G A C G T C G T A C G T A C G T A C G T A A C G T A G T C
T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A A C G T

HOXD10/MA1506.1/Jaspar

Match Rank:6
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--TCGTAAAATC
GGTCGTAAAAC-
A C G T A C G T A C G T A G T C A C T G A C G T C G T A C G T A C G T A C G T A A C G T A G T C
T C A G T C A G A G C T G T A C T C A G A C G T C G T A C G T A G T C A G C T A G A T C A C G T

HOXC11/MA0651.1/Jaspar

Match Rank:7
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--TCGTAAAATC
GGTCGTAAAAT-
A C G T A C G T A C G T A G T C A C T G A C G T C G T A C G T A C G T A C G T A A C G T A G T C
C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T A C G T

PH0076.1_Hoxd11/Jaspar

Match Rank:8
Score:0.85
Offset:-5
Orientation:forward strand
Alignment:-----TCGTAAAATC--
TAAGGTCGTAAAATCCT
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T C G T A C G T A C G T A C G T A A C G T A G T C A C G T A C G T
G A C T G C T A C T G A T C A G T C A G A G C T G A T C C T A G A C G T C G T A C G T A G C T A G C T A G C A T G A T C G A T C C A G T

HOXD12/MA0873.1/Jaspar

Match Rank:9
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--TCGTAAAATC
AGTCGTAAAAA-
A C G T A C G T A C G T A G T C A C T G A C G T C G T A C G T A C G T A C G T A A C G T A G T C
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:10
Score:0.84
Offset:-5
Orientation:forward strand
Alignment:-----TCGTAAAATC-
AAACCTCGTAAAATTT
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T C G T A C G T A C G T A C G T A A C G T A G T C A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T