Information for 6-KGYSWRGWMSAT (Motif 6)

A C T G A C T G A G T C A T G C C G T A C T G A A T C G C G A T G T C A T A G C C G T A A C G T
Reverse Opposite:
C G T A A C G T A T C G A C G T C G T A A T G C A G C T C G A T A T C G C T A G A G T C G T A C
p-value:1e-4
log p-value:-9.928e+00
Information Content per bp:1.747
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif30.77%
Number of Background Sequences with motif1326.3
Percentage of Background Sequences with motif1.67%
Average Position of motif in Targets129.4 +/- 57.1bp
Average Position of motif in Background101.0 +/- 76.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.2/Jaspar

Match Rank:1
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--KGYSWRGWMSAT
NNTGCCAAGNN---
A C G T A C G T A C T G A C T G A G T C A T G C C G T A C T G A A T C G C G A T G T C A T A G C C G T A A C G T
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A A C G T A C G T A C G T

Smad4/MA1153.1/Jaspar

Match Rank:2
Score:0.56
Offset:0
Orientation:forward strand
Alignment:KGYSWRGWMSAT
TGTCTAGA----
A C T G A C T G A G T C A T G C C G T A C T G A A T C G C G A T G T C A T A G C C G T A A C G T
G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A A C G T A C G T A C G T A C G T

SMAD5/MA1557.1/Jaspar

Match Rank:3
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:KGYSWRGWMSAT
TGTCTAGACA--
A C T G A C T G A G T C A T G C C G T A C T G A A T C G C G A T G T C A T A G C C G T A A C G T
C G A T C T A G C A G T A T G C A C G T T G C A A C T G G T C A A G T C C T G A A C G T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:4
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:KGYSWRGWMSAT
TGTCTAGACG--
A C T G A C T G A G T C A T G C C G T A C T G A A T C G C G A T G T C A T A G C C G T A A C G T
C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G A C G T A C G T

ZSCAN29/MA1602.1/Jaspar

Match Rank:5
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--KGYSWRGWMSAT
NCNGTGTAGACG--
A C G T A C G T A C T G A C T G A G T C A T G C C G T A C T G A A T C G C G A T G T C A T A G C C G T A A C G T
A T G C G A T C A G T C T A C G A G C T C T A G C A G T C T G A A C T G T C G A A G T C T C A G A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.53
Offset:2
Orientation:forward strand
Alignment:KGYSWRGWMSAT
--CCAGGAACAG
A C T G A C T G A G T C A T G C C G T A C T G A A T C G C G A T G T C A T A G C C G T A A C G T
A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

PB0039.1_Klf7_1/Jaspar

Match Rank:7
Score:0.51
Offset:-5
Orientation:reverse strand
Alignment:-----KGYSWRGWMSAT
NNAGGGGCGGGGTNNA-
A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C A T G C C G T A C T G A A T C G C G A T G T C A T A G C C G T A A C G T
G C T A C G A T C T G A C T A G C T A G A C T G A C T G G A T C C A T G A C T G C A T G C A T G A G C T G A T C T C A G C G T A A C G T

Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer

Match Rank:8
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:KGYSWRGWMSAT-
-----RRTCAATA
A C T G A C T G A G T C A T G C C G T A C T G A A T C G C G A T G T C A T A G C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G C T G A A G C T G T A C C T G A C G T A A C G T C G T A

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:9
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-KGYSWRGWMSAT
AGGCCTAG-----
A C G T A C T G A C T G A G T C A T G C C G T A C T G A A T C G C G A T G T C A T A G C C G T A A C G T
T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T A C G T A C G T

ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-KGYSWRGWMSAT--
GGGCGATGACCAYTC
A C G T A C T G A C T G A G T C A T G C C G T A C T G A A T C G C G A T G T C A T A G C C G T A A C G T A C G T A C G T
C T A G T A C G T C A G A G T C A C T G T G C A A G C T A C T G G T C A G T A C G A T C C T G A A G T C A C G T A T G C