Information for 6-AWTGGCACTC (Motif 20)

T G C A C G A T G C A T A T C G A T C G G T A C G T C A A G T C C G A T A G T C
Reverse Opposite:
T C A G C G T A T C A G C A G T A C T G A T G C A T G C C G T A G C T A A C G T
p-value:1e-8
log p-value:-1.886e+01
Information Content per bp:1.688
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.93%
Number of Background Sequences with motif93.6
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets91.7 +/- 53.5bp
Average Position of motif in Background96.7 +/- 60.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.27
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-AWTGGCACTC
NNTTGGCANN-
A C G T T G C A C G A T G C A T A T C G A T C G G T A C G T C A A G T C C G A T A G T C
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:AWTGGCACTC
NTTGGCANN-
T G C A C G A T G C A T A T C G A T C G G T A C G T C A A G T C C G A T A G T C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:3
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---AWTGGCACTC
CCGATTGGCT---
A C G T A C G T A C G T T G C A C G A T G C A T A T C G A T C G G T A C G T C A A G T C C G A T A G T C
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AWTGGCACTC--
--AASCACTCAA
T G C A C G A T G C A T A T C G A T C G G T A C G T C A A G T C C G A T A G T C A C G T A C G T
A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:AWTGGCACTC---
---NSCACTYVAV
T G C A C G A T G C A T A T C G A T C G G T A C G T C A A G T C C G A T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.62
Offset:3
Orientation:forward strand
Alignment:AWTGGCACTC---
---RSCACTYRAG
T G C A C G A T G C A T A T C G A T C G G T A C G T C A A G T C C G A T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:7
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AWTGGCACTC---
--AGCCACTCAAG
T G C A C G A T G C A T A T C G A T C G G T A C G T C A A G T C C G A T A G T C A C G T A C G T A C G T
A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

Hic1/MA0739.1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AWTGGCACTC
GGTTGGCAT--
A C G T T G C A C G A T G C A T A T C G A T C G G T A C G T C A A G T C C G A T A G T C
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

NFYB/MA0502.2/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AWTGGCACTC
CTCATTGGCCAG-
A C G T A C G T A C G T T G C A C G A T G C A T A T C G A T C G G T A C G T C A A G T C C G A T A G T C
A T G C A G C T A T G C G C T A A G C T C A G T C A T G C T A G A G T C G A T C T G C A T C A G A C G T

NFIC/MA0161.2/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AWTGGCACTC
TACTTGGCAGA-
A C G T A C G T T G C A C G A T G C A T A T C G A T C G G T A C G T C A A G T C C G A T A G T C
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A A C G T