Information for 18-CTGACATTGTAT (Motif 25)

A G T C A C G T A C T G C G T A A G T C C G T A A C G T A C G T A C T G A C G T C G T A A C G T
Reverse Opposite:
C G T A A C G T C G T A A G T C C G T A C G T A A C G T A C T G A C G T A G T C C G T A A C T G
p-value:1e-3
log p-value:-8.355e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets104.0 +/- 0.0bp
Average Position of motif in Background126.5 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX2/MA0143.4/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CTGACATTGTAT
-NNCCATTGTNN
A G T C A C G T A C T G C G T A A G T C C G T A A C G T A C G T A C T G A C G T C G T A A C G T
A C G T C G A T G C A T G A T C G A T C G C T A A G C T C G A T C T A G C G A T G C A T G C A T

SOX13/MA1120.1/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CTGACATTGTAT
-NNCCATTGTNN
A G T C A C G T A C T G C G T A A G T C C G T A A C G T A C G T A C T G A C G T C G T A A C G T
A C G T C G A T A C T G A G T C G A T C C G T A G A C T C G A T T C A G G A C T A G C T G A C T

Dmrt1/MA1603.1/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CTGACATTGTAT-
GNTACTTTGTATC
A G T C A C G T A C T G C G T A A G T C C G T A A C G T A C G T A C T G A C G T C G T A A C G T A C G T
C A T G G C T A G C A T G C T A G A T C G C A T C G A T C G A T C T A G G C A T C G T A C G A T G A T C

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:4
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CTGACATTGTAT------
---CCATTGTATGCAAAT
A G T C A C G T A C T G C G T A A G T C C G T A A C G T A C G T A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

PB0014.1_Esrra_1/Jaspar

Match Rank:5
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CTGACATTGTAT-
NNNNATGACCTTGANTN
A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G T A A G T C C G T A A C G T A C G T A C T G A C G T C G T A A C G T A C G T
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A

MEIS1/MA0498.2/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTGACATTGTAT
TTGACAG-----
A G T C A C G T A C T G C G T A A G T C C G T A A C G T A C G T A C T G A C G T C G T A A C G T
G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T A C G T

ESRRA/MA0592.3/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CTGACATTGTAT
NNTGACCTTGANN
A C G T A G T C A C G T A C T G C G T A A G T C C G T A A C G T A C G T A C T G A C G T C G T A A C G T
A G C T C T A G G A C T T C A G G C T A G T A C G T A C A G C T G A C T A T C G C T G A T C A G G T A C

Sox17/MA0078.1/Jaspar

Match Rank:8
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CTGACATTGTAT
--CTCATTGTC-
A G T C A C G T A C T G C G T A A G T C C G T A A C G T A C G T A C T G A C G T C G T A A C G T
A C G T A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T

SRY/MA0084.1/Jaspar

Match Rank:9
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:CTGACATTGTAT--
-----ATTGTTTAN
A G T C A C G T A C T G C G T A A G T C C G T A A C G T A C G T A C T G A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A G C T A C G T C T A G C G A T C G A T G C A T G C T A G T A C

PB0168.1_Sox14_2/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTGACATTGTAT---
NNNCCATTGTGTNAN
A G T C A C G T A C T G C G T A A G T C C G T A A C G T A C G T A C T G A C G T C G T A A C G T A C G T A C G T A C G T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G