| p-value: | 1e-5 |
| log p-value: | -1.263e+01 |
| Information Content per bp: | 1.690 |
| Number of Target Sequences with motif | 37.0 |
| Percentage of Target Sequences with motif | 3.51% |
| Number of Background Sequences with motif | 718.2 |
| Percentage of Background Sequences with motif | 1.51% |
| Average Position of motif in Targets | 98.7 +/- 58.9bp |
| Average Position of motif in Background | 98.5 +/- 59.3bp |
| Strand Bias (log2 ratio + to - strand density) | 1.4 |
| Multiplicity (# of sites on avg that occur together) | 1.06 |
| Motif File: | file (matrix) reverse opposite |
| SVG Files for Logos: | forward logo reverse opposite |
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer
| Match Rank: | 1 |
| Score: | 0.74 |
| Offset: | 0 |
| Orientation: | forward strand |
| Alignment: | GGGTSARRGAMA AGGTCAAGGTCA |
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RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer
| Match Rank: | 2 |
| Score: | 0.73 |
| Offset: | 0 |
| Orientation: | forward strand |
| Alignment: | GGGTSARRGAMA AGGTCAAGGTCA |
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|
SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar
| Match Rank: | 3 |
| Score: | 0.64 |
| Offset: | 0 |
| Orientation: | reverse strand |
| Alignment: | GGGTSARRGAMA- AGGTGNCAGACAG |
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|
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer
| Match Rank: | 4 |
| Score: | 0.61 |
| Offset: | 0 |
| Orientation: | forward strand |
| Alignment: | GGGTSARRGAMA AGGTGHCAGACA |
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|
|
RARA::RXRA/MA0159.1/Jaspar
| Match Rank: | 5 |
| Score: | 0.60 |
| Offset: | 0 |
| Orientation: | forward strand |
| Alignment: | GGGTSARRGAMA----- AGGTCACGGAGAGGTCA |
|
|
|
MF0004.1_Nuclear_Receptor_class/Jaspar
| Match Rank: | 6 |
| Score: | 0.60 |
| Offset: | 0 |
| Orientation: | forward strand |
| Alignment: | GGGTSARRGAMA AGGTCA------ |
|
|
|
NR2C1/MA1535.1/Jaspar
| Match Rank: | 7 |
| Score: | 0.60 |
| Offset: | -2 |
| Orientation: | forward strand |
| Alignment: | --GGGTSARRGAMA CGAGGTCAC----- |
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|
|
NR4A2::RXRA/MA1147.1/Jaspar
| Match Rank: | 8 |
| Score: | 0.59 |
| Offset: | -1 |
| Orientation: | reverse strand |
| Alignment: | -GGGTSARRGAMA-- GGGGTCAATGACCTN |
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|
|
PB0153.1_Nr2f2_2/Jaspar
| Match Rank: | 9 |
| Score: | 0.59 |
| Offset: | -6 |
| Orientation: | forward strand |
| Alignment: | ------GGGTSARRGAMA CGCGCCGGGTCACGTA-- |
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|
|
Nr5a2/MA0505.1/Jaspar
| Match Rank: | 10 |
| Score: | 0.59 |
| Offset: | -1 |
| Orientation: | forward strand |
| Alignment: | -GGGTSARRGAMA-- AAGTTCAAGGTCAGC |
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