Information for 11-AACCCTAAAA (Motif 28)

T C G A C T G A A G T C A G T C A G T C A C G T G C T A T G C A G C T A T G C A
Reverse Opposite:
A C G T C G A T A C G T C G A T C G T A C T A G C T A G C T A G G A C T A G C T
p-value:1e-5
log p-value:-1.285e+01
Information Content per bp:1.872
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif1.79%
Number of Background Sequences with motif257.0
Percentage of Background Sequences with motif0.54%
Average Position of motif in Targets103.9 +/- 55.9bp
Average Position of motif in Background101.3 +/- 54.7bp
Strand Bias (log2 ratio + to - strand density)-1.8
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AACCCTAAAA
VGCCATAAAA
T C G A C T G A A G T C A G T C A G T C A C G T G C T A T G C A G C T A T G C A
T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A

PH0064.1_Hoxb9/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AACCCTAAAA----
AGAGCCATAAAATTCG
A C G T A C G T T C G A C T G A A G T C A G T C A G T C A C G T G C T A T G C A G C T A T G C A A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AACCCTAAAA--
NGYCATAAAWCH
T C G A C T G A A G T C A G T C A G T C A C G T G C T A T G C A G C T A T G C A A C G T A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AACCCTAAAA
KGCCATAAAA
T C G A C T G A A G T C A G T C A G T C A C G T G C T A T G C A G C T A T G C A
C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A

HOXD12/MA0873.1/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AACCCTAAAA-
AGTCGTAAAAA
T C G A C T G A A G T C A G T C A G T C A C G T G C T A T G C A G C T A T G C A A C G T
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AACCCTAAAA-
-GTCATAAAAN
T C G A C T G A A G T C A G T C A G T C A C G T G C T A T G C A G C T A T G C A A C G T
A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

CDX1/MA0878.2/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AACCCTAAAA-
GGCCATAAAAC
T C G A C T G A A G T C A G T C A G T C A C G T G C T A T G C A G C T A T G C A A C G T
C A T G C T A G A G T C T G A C C G T A A C G T C T G A C G T A C T G A G T C A A G T C

HOXA13/MA0650.2/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AACCCTAAAA-
CCCAATAAAAC
T C G A C T G A A G T C A G T C A G T C A C G T G C T A T G C A G C T A T G C A A C G T
T G A C T A G C A G T C G T C A C G T A A C G T C T G A C T G A C G T A G T C A G T A C

PH0056.1_Hoxa9/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AACCCTAAAA-----
ACGGCCATAAAATTAAT
A C G T A C G T T C G A C T G A A G T C A G T C A G T C A C G T G C T A T G C A G C T A T G C A A C G T A C G T A C G T A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

HOXC12/MA0906.1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AACCCTAAAA-
GGTCGTAAAAA
T C G A C T G A A G T C A G T C A G T C A C G T G C T A T G C A G C T A T G C A A C G T
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A