Information for 12-AAGCATTATGAC (Motif 20)

C G T A C G T A A C T G A G T C C G T A A C G T A C G T C G T A A C G T A C T G C G T A A G T C
Reverse Opposite:
A C T G A C G T A G T C C G T A A C G T C G T A C G T A A C G T A C T G A G T C A C G T A C G T
p-value:1e-3
log p-value:-8.207e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif7.14%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.0 +/- 0.0bp
Average Position of motif in Background143.0 +/- 25.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AAGCATTATGAC
AAACMATTAN---
A C G T C G T A C G T A A C T G A G T C C G T A A C G T A C G T C G T A A C G T A C T G C G T A A G T C
T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G A C G T A C G T A C G T

BARX2/MA1471.1/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AAGCATTATGAC
AAAAACCATTAC---
A C G T A C G T A C G T C G T A C G T A A C T G A G T C C G T A A C G T A C G T C G T A A C G T A C T G C G T A A G T C
C T G A C G T A G C T A C G T A T G C A G A T C T G A C T C G A C A G T G A C T C G T A T A G C A C G T A C G T A C G T

PH0065.1_Hoxc10/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AAGCATTATGAC----
ANNTTTTACGACNTNN
C G T A C G T A A C T G A G T C C G T A A C G T A C G T C G T A A C G T A C T G C G T A A G T C A C G T A C G T A C G T A C G T
T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A

HOXA9/MA0594.2/Jaspar

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:AAGCATTATGAC
--NNTTTACGAC
C G T A C G T A A C T G A G T C C G T A A C G T A C G T C G T A A C G T A C T G C G T A A G T C
A C G T A C G T A T G C C T A G C G A T C G A T C G A T C T G A A G T C C A T G C T G A A G T C

PH0047.1_Hoxa11/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AAGCATTATGAC----
NNGTTTTACGACTTTA
C G T A C G T A A C T G A G T C C G T A A C G T A C G T C G T A A C G T A C T G C G T A A G T C A C G T A C G T A C G T A C G T
G T C A G A C T C T A G C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C G T A

CDX1/MA0878.2/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AAGCATTATGAC-
--GTTTTATGGCC
C G T A C G T A A C T G A G T C C G T A A C G T A C G T C G T A A C G T A C T G C G T A A G T C A C G T
A C G T A C G T T C A G C A G T A G C T A C G T A G C T C G T A A C G T A C T G T C A G G A T C G T A C

PH0013.1_Cdx2/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AAGCATTATGAC----
NAATTTTATTACCNNN
C G T A C G T A A C T G A G T C C G T A A C G T A C G T C G T A A C G T A C T G C G T A A G T C A C G T A C G T A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

PH0012.1_Cdx1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AAGCATTATGAC----
NAATTTTATTACCTNN
C G T A C G T A A C T G A G T C C G T A A C G T A C G T C G T A A C G T A C T G C G T A A G T C A C G T A C G T A C G T A C G T
C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AAGCATTATGAC-
WYATGCATWATGCAT
A C G T A C G T C G T A C G T A A C T G A G T C C G T A A C G T A C G T C G T A A C G T A C T G C G T A A G T C A C G T
C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AAGCATTATGAC
NGGGATTA----
C G T A C G T A A C T G A G T C C G T A A C G T A C G T C G T A A C G T A C T G C G T A A G T C
T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T A C G T A C G T