Information for 3-GATTAGTGCG (Motif 12)

A C T G C G T A A C G T A C G T C G T A A C T G A C G T A C T G A G T C A C T G
Reverse Opposite:
A G T C A C T G A G T C C G T A A G T C A C G T C G T A C G T A A C G T A G T C
p-value:1e-3
log p-value:-9.017e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets30.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GATTAGTGCG
RGGATTAR----
A C G T A C G T A C T G C G T A A C G T A C G T C G T A A C T G A C G T A C T G A G T C A C T G
T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:2
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---GATTAGTGCG
NNGGATTAGN---
A C G T A C G T A C G T A C T G C G T A A C G T A C G T C G T A A C T G A C G T A C T G A G T C A C T G
C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C A C G T A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:3
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---GATTAGTGCG
GNGGATTAGN---
A C G T A C G T A C G T A C T G C G T A A C G T A C G T C G T A A C T G A C G T A C T G A G T C A C T G
C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G A C G T A C G T A C G T

GATA1/MA0035.4/Jaspar

Match Rank:4
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---GATTAGTGCG
NNAGATTAGAN--
A C G T A C G T A C G T A C T G C G T A A C G T A C G T C G T A A C T G A C G T A C T G A G T C A C T G
C G T A G C A T C G T A C A T G C G T A C G A T G C A T G C T A C A T G C G T A G C T A A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:5
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GATTAGTGCG
GGATTAGC---
A C G T A C T G C G T A A C G T A C G T C G T A A C T G A C G T A C T G A G T C A C T G
T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T A C G T

OTX1/MA0711.1/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GATTAGTGCG
CGGATTAN----
A C G T A C G T A C T G C G T A A C G T A C G T C G T A A C T G A C G T A C T G A G T C A C T G
T A G C T A C G A T C G G T C A A C G T G C A T C G T A C T G A A C G T A C G T A C G T A C G T

PITX1/MA0682.2/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GATTAGTGCG
NGGATTAN----
A C G T A C G T A C T G C G T A A C G T A C G T C G T A A C T G A C G T A C T G A G T C A C T G
C A T G T C A G C A T G G T C A A C G T A C G T C G T A C T A G A C G T A C G T A C G T A C G T

OTX2/MA0712.2/Jaspar

Match Rank:8
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GATTAGTGCG
AAGGGATTAGAA--
A C G T A C G T A C G T A C G T A C T G C G T A A C G T A C G T C G T A A C T G A C G T A C T G A G T C A C T G
G C T A C G T A C T A G C T A G C T A G G T C A C A G T G C A T C G T A C T A G C G T A C G T A A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GATTAGTGCG
GGGATTANN---
A C G T A C G T A C T G C G T A A C G T A C G T C G T A A C T G A C G T A C T G A G T C A C T G
C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T A C G T A C G T

PB0185.1_Tcf1_2/Jaspar

Match Rank:10
Score:0.66
Offset:-7
Orientation:forward strand
Alignment:-------GATTAGTGCG
TTGCCCGGATTAGG---
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C G T A C G T C G T A A C T G A C G T A C T G A G T C A C T G
C G A T A C G T T C A G G A T C T A G C A G T C T A C G A C T G C T G A C A G T A C G T C G T A C A T G C T A G A C G T A C G T A C G T