Information for 3-AAGCCAGTGTAG (Motif 6)

C G T A C G T A A C T G A G T C A G T C C G T A A C T G A C G T A C T G A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A A G T C C G T A A G T C A C G T A C T G A C T G A G T C A C G T A C G T
p-value:1e-4
log p-value:-9.625e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.0 +/- 0.0bp
Average Position of motif in Background19.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZSCAN29/MA1602.1/Jaspar

Match Rank:1
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:AAGCCAGTGTAG---
---NCNGTGTAGACG
C G T A C G T A A C T G A G T C A G T C C G T A A C T G A C G T A C T G A C G T C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A T G C G A T C A G T C T A C G A G C T C T A G C A G T C T G A A C T G T C G A A G T C T C A G

SOX2/MA0143.4/Jaspar

Match Rank:2
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AAGCCAGTGTAG
-NNCCATTGTNN
C G T A C G T A A C T G A G T C A G T C C G T A A C T G A C G T A C T G A C G T C G T A A C T G
A C G T C G A T G C A T G A T C G A T C G C T A A G C T C G A T C T A G C G A T G C A T G C A T

SOX13/MA1120.1/Jaspar

Match Rank:3
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AAGCCAGTGTAG
-NNCCATTGTNN
C G T A C G T A A C T G A G T C A G T C C G T A A C T G A C G T A C T G A C G T C G T A A C T G
A C G T C G A T A C T G A G T C G A T C C G T A G A C T C G A T T C A G G A C T A G C T G A C T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AAGCCAGTGTAG
AAGGCAAGTGT--
A C G T C G T A C G T A A C T G A G T C A G T C C G T A A C T G A C G T A C T G A C G T C G T A A C T G
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:5
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---AAGCCAGTGTAG-
NNNNTGCCAGTGATTG
A C G T A C G T A C G T C G T A C G T A A C T G A G T C A G T C C G T A A C T G A C G T A C T G A C G T C G T A A C T G A C G T
G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G

PB0091.1_Zbtb3_1/Jaspar

Match Rank:6
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---AAGCCAGTGTAG--
NNNANTGCAGTGCNNTT
A C G T A C G T A C G T C G T A C G T A A C T G A G T C A G T C C G T A A C T G A C G T A C T G A C G T C G T A A C T G A C G T A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

GRHL1/MA0647.1/Jaspar

Match Rank:7
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-AAGCCAGTGTAG
AAAACCGGTTTT-
A C G T C G T A C G T A A C T G A G T C A G T C C G T A A C T G A C G T A C T G A C G T C G T A A C T G
G T C A C G T A C T G A C G T A A G T C G T A C C T A G A T C G G C A T G A C T G C A T C G A T A C G T

PB0051.1_Osr2_1/Jaspar

Match Rank:8
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--AAGCCAGTGTAG--
CNNNGCTACTGTANNN
A C G T A C G T C G T A C G T A A C T G A G T C A G T C C G T A A C T G A C G T A C T G A C G T C G T A A C T G A C G T A C G T
G A T C C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C A T G A C G T C G T A A G T C C G T A C G A T

POL004.1_CCAAT-box/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--AAGCCAGTGTAG
ACTAGCCAATCA--
A C G T A C G T C G T A C G T A A C T G A G T C A G T C C G T A A C T G A C G T A C T G A C G T C G T A A C T G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:10
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--AAGCCAGTGTAG
AGGVNCCTTTGT--
A C G T A C G T C G T A C G T A A C T G A G T C A G T C C G T A A C T G A C G T A C T G A C G T C G T A A C T G
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T