Information for 12-GACCTCACATAC (Motif 20)

A C T G C G T A A G T C A G T C A C G T A G T C C G T A A G T C C G T A A C G T C G T A A G T C
Reverse Opposite:
A C T G A C G T C G T A A C G T A C T G A C G T A C T G C G T A A C T G A C T G A C G T A G T C
p-value:1e-3
log p-value:-8.658e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif8.33%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets66.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX3/MA0684.2/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GACCTCACATAC
AAAACCTCAAAT--
A C G T A C G T A C T G C G T A A G T C A G T C A C G T A G T C C G T A A G T C C G T A A C G T C G T A A G T C
C G T A G C T A T C G A C T G A G A T C T G A C C G A T T G A C G C T A C T G A G C T A G A C T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GACCTCACATAC
TGACCTYA-----
A C G T A C T G C G T A A G T C A G T C A C G T A G T C C G T A A G T C C G T A A C G T C G T A A G T C
A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

CREB1/MA0018.4/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GACCTCACATAC
NATGACATCANNN--
A C G T A C G T A C G T A C T G C G T A A G T C A G T C A C G T A G T C C G T A A G T C C G T A A C G T C G T A A G T C
C A G T T C G A G C A T A C T G C G T A T A G C T C G A G C A T T G A C G C T A A G C T G T C A C G T A A C G T A C G T

ATF2/MA1632.1/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GACCTCACATAC
NATGACNTCATNN--
A C G T A C G T A C G T A C T G C G T A A G T C A G T C A C G T A G T C C G T A A G T C C G T A A C G T C G T A A G T C
C T G A T C G A G A C T C A T G C G T A A G T C T G A C C G A T G T A C C T G A A G C T G A C T G C A T A C G T A C G T

CREM/MA0609.2/Jaspar

Match Rank:5
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GACCTCACATAC
GCAGTGACGTCACTGC-
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A C G T A G T C C G T A A G T C C G T A A C G T C G T A A G T C
T A C G T G A C C T G A T C A G G A C T A T C G C T G A A G T C T C A G G A C T T A G C C T G A A G T C G A C T A C T G A T G C A C G T

Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GACCTCACATAC
AGACCACCCASR-
A C G T A C T G C G T A A G T C A G T C A C G T A G T C C G T A A G T C C G T A A C G T C G T A A G T C
C T G A A C T G T C G A T G A C G A T C G C T A T A G C T G A C G T A C C G T A T A G C T C A G A C G T

ZKSCAN5/MA1652.1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GACCTCACATAC---
-NNCTCACCTCCTNN
A C T G C G T A A G T C A G T C A C G T A G T C C G T A A G T C C G T A A C G T C G T A A G T C A C G T A C G T A C G T
A C G T A G C T A G C T G T A C A G C T A G T C T C G A G A T C A G T C A C G T A G T C G A T C G A C T A G T C G A T C

JUN::JUNB(var.2)/MA1133.1/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GACCTCACATAC
NATGACGTCACA---
A C G T A C G T A C G T A C T G C G T A A G T C A G T C A C G T A G T C C G T A A G T C C G T A A C G T C G T A A G T C
T G C A T G C A G A C T C A T G G T C A G A T C T C A G G C A T G T A C C G T A A G T C T G C A A C G T A C G T A C G T

NR2C1/MA1535.1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GACCTCACATAC
NTGACCTCN-----
A C G T A C G T A C T G C G T A A G T C A G T C A C G T A G T C C G T A A G T C C G T A A C G T C G T A A G T C
C T A G A G C T A T C G G T C A A G T C G T A C A G C T G A T C C A T G A C G T A C G T A C G T A C G T A C G T

PB0025.1_Glis2_1/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GACCTCACATAC
TATCGACCCCCCACAG
A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A C G T A G T C C G T A A G T C C G T A A C G T C G T A A G T C
G A C T G C T A G C A T T A G C A C T G T G C A A G T C A G T C G A T C G A T C G A T C G A T C T G C A A G T C C T G A C A T G