Information for 23-CACTTAGCCCCA (Motif 29)

A T G C C G T A A G T C A C G T A C G T C G T A A T C G G T A C G T A C A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G A C T G A C T G A T G C C G A T G T C A C G T A C T A G A C G T A T C G
p-value:1e-2
log p-value:-5.569e+00
Information Content per bp:1.807
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.37%
Number of Background Sequences with motif18.1
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets96.9 +/- 56.8bp
Average Position of motif in Background92.6 +/- 47.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)4.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ISL2/MA0914.1/Jaspar

Match Rank:1
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CACTTAGCCCCA
GCACTTAA-----
A C G T A T G C C G T A A G T C A C G T A C G T C G T A A T C G G T A C G T A C A G T C A G T C C G T A
T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:2
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CACTTAGCCCCA
ACCACTTAA-----
A C G T A C G T A T G C C G T A A G T C A C G T A C G T C G T A A T C G G T A C G T A C A G T C A G T C C G T A
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T

Plagl1/MA1615.1/Jaspar

Match Rank:3
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CACTTAGCCCCA---
--NNTGGCCCCAGNN
A T G C C G T A A G T C A C G T A C G T C G T A A T C G G T A C G T A C A G T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A T G C T A G C A G C T T A C G C A T G A T G C A T G C A G T C A T G C C G T A A T C G A T C G A T C G

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CACTTAGCCCCA
TGACCTTTGCCCCA
A C G T A C G T A T G C C G T A A G T C A C G T A C G T C G T A A T C G G T A C G T A C A G T C A G T C C G T A
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A

Nkx3-2/MA0122.3/Jaspar

Match Rank:5
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CACTTAGCCCCA
ATAACCACTTAAA----
A C G T A C G T A C G T A C G T A C G T A T G C C G T A A G T C A C G T A C G T C G T A A T C G G T A C G T A C A G T C A G T C C G T A
C G T A C G A T C G T A C G T A T G A C G A T C G C T A G T A C G C A T G A C T G C T A C G T A G C T A A C G T A C G T A C G T A C G T

ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CACTTAGCCCCA
--GTGGGCCCCA
A T G C C G T A A G T C A C G T A C G T C G T A A T C G G T A C G T A C A G T C A G T C C G T A
A C G T A C G T T A C G G A C T A C T G A C T G C T A G A T G C A G T C A G T C A G T C C T G A

PH0004.1_Nkx3-2/Jaspar

Match Rank:7
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------CACTTAGCCCCA
CATAACCACTTAACAAC-
A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G T A A G T C A C G T A C G T C G T A A T C G G T A C G T A C A G T C A G T C C G T A
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C A C G T

Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer

Match Rank:8
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CACTTAGCCCCA--
----KGGCCYCWTD
A T G C C G T A A G T C A C G T A C G T C G T A A T C G G T A C G T A C A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C A T G C A T G T A C G G T A C A T G C G A T C A T G C G C T A A G C T C T G A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:9
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CACTTAGCCCCA
MRSCACTYAA-----
A C G T A C G T A C G T A T G C C G T A A G T C A C G T A C G T C G T A A T C G G T A C G T A C A G T C A G T C C G T A
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:10
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CACTTAGCCCCA
AAGCACTTAA-----
A C G T A C G T A C G T A T G C C G T A A G T C A C G T A C G T C G T A A T C G G T A C G T A C A G T C A G T C C G T A
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T A C G T A C G T A C G T