Information for 11-CCTTCATTAAAG (Motif 13)

A G T C A G T C A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A C G T C G T A C G T A A C G T A C T G C G T A C G T A A C T G A C T G
p-value:1e-4
log p-value:-9.937e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets31.0 +/- 0.0bp
Average Position of motif in Background77.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX6-3/MA1530.1/Jaspar

Match Rank:1
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CCTTCATTAAAG
--CTCATTAAA-
A G T C A G T C A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A C G T A A C T G
A C G T A C G T T A G C A G C T A G T C C G T A A C G T A G C T C T G A G C T A G C T A A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:2
Score:0.68
Offset:5
Orientation:forward strand
Alignment:CCTTCATTAAAG
-----ATTAAA-
A G T C A G T C A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A C G T A A C T G
A C G T A C G T A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:3
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CCTTCATTAAAG
---YCATTAMC-
A G T C A G T C A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A C G T A A C T G
A C G T A C G T A C G T A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C A C G T

NKX6-1/MA0674.1/Jaspar

Match Rank:4
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CCTTCATTAAAG
--GTAATTAA--
A G T C A G T C A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A C G T A A C T G
A C G T A C G T T A C G A G C T G T C A G T C A A C G T G C A T T C G A G C T A A C G T A C G T

HOXC4/MA1504.1/Jaspar

Match Rank:5
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CCTTCATTAAAG
--GTCATTAA--
A G T C A G T C A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A C G T A A C T G
A C G T A C G T T C A G G A C T G T A C C T G A A C G T A C G T C T G A T C G A A C G T A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CCTTCATTAAAG--
NNCATTCATTCATNNN
A C G T A C G T A G T C A G T C A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A C G T A A C T G A C G T A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

LMX1B/MA0703.2/Jaspar

Match Rank:7
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CCTTCATTAAAG-
--TTAATTAAANT
A G T C A G T C A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A C G T A A C T G A C G T
A C G T A C G T C A G T A C G T C G T A C G T A A C G T A C G T C G T A T C G A G C T A G C T A G A C T

HOXB4/MA1499.1/Jaspar

Match Rank:8
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CCTTCATTAAAG
--ATCATTAG--
A G T C A G T C A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A C G T A A C T G
A C G T A C G T T C G A A G C T G T A C C T G A A C G T A C G T C T G A T C A G A C G T A C G T

PB0005.1_Bbx_1/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CCTTCATTAAAG--
NANTTCATTGAATTA
A C G T A G T C A G T C A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A C G T A A C T G A C G T A C G T
G A T C C G T A T A G C C G A T C G A T T G A C G C T A G C A T C G A T A C T G C G T A G C T A G A C T C G A T C G T A

NKX6-2/MA0675.1/Jaspar

Match Rank:10
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CCTTCATTAAAG
--CTAATTAA--
A G T C A G T C A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A C G T A A C T G
A C G T A C G T A T G C G A C T G T C A G C T A C G A T G C A T C T G A G C T A A C G T A C G T