Information for 20-GAAAGATAATCC (Motif 37)

A C T G C G T A C G T A C G T A A C T G C G T A A C G T C G T A C G T A A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A A C G T A C G T C G T A A C G T A G T C A C G T A C G T A C G T A G T C
p-value:1e-3
log p-value:-7.496e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif6.25%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets32.0 +/- 0.0bp
Average Position of motif in Background77.8 +/- 8.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

DPRX/MA1480.1/Jaspar

Match Rank:1
Score:0.82
Offset:3
Orientation:forward strand
Alignment:GAAAGATAATCC-
---AGATAATCCC
A C T G C G T A C G T A C G T A A C T G C G T A A C G T C G T A C G T A A C G T A G T C A G T C A C G T
A C G T A C G T A C G T T C G A T A C G G T C A A C G T T G C A C G T A A C G T G T A C A G T C A T G C

PH0139.1_Pitx3/Jaspar

Match Rank:2
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GAAAGATAATCC----
GNNAGCTAATCCCCCN
A C T G C G T A C G T A C G T A A C T G C G T A A C G T C G T A C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

PH0124.1_Obox5_1/Jaspar

Match Rank:3
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GAAAGATAATCC-----
NANANTTAATCCCNNNN
A C T G C G T A C G T A C G T A A C T G C G T A A C G T C G T A C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T
C A T G C G T A C T G A C T G A C G A T G C A T C G A T C G T A C G T A C G A T G A T C A G T C A G T C A G C T A G T C G A C T C G T A

PITX2/MA1547.1/Jaspar

Match Rank:4
Score:0.70
Offset:5
Orientation:forward strand
Alignment:GAAAGATAATCC-
-----ATAATCCC
A C T G C G T A C G T A C G T A A C T G C G T A A C G T C G T A C G T A A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G T C A C G A T C T G A C G T A A C G T A G T C A G T C T G A C

PH0125.1_Obox5_2/Jaspar

Match Rank:5
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GAAAGATAATCC-----
GATAATTAATCCCTCTT
A C T G C G T A C G T A C G T A A C T G C G T A A C G T C G T A C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C T G C G T A A G C T C T G A C G T A G C A T C G A T C G T A C G T A C A G T G T A C A G T C A G T C A G C T A G T C G A C T A G C T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.69
Offset:4
Orientation:forward strand
Alignment:GAAAGATAATCC
----GCTAATCC
A C T G C G T A C G T A C G T A A C T G C G T A A C G T C G T A C G T A A C G T A G T C A G T C
A C G T A C G T A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C

PITX1/MA0682.2/Jaspar

Match Rank:7
Score:0.69
Offset:5
Orientation:forward strand
Alignment:GAAAGATAATCC-
-----CTAATCCC
A C T G C G T A C G T A C G T A A C T G C G T A A C G T C G T A C G T A A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A T C A C G T C G T A C G T A A C G T G T A C A G T C G T A C

PH0123.1_Obox3/Jaspar

Match Rank:8
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GAAAGATAATCC------
-ATAGTTAATCCCCCNNA
A C T G C G T A C G T A C G T A A C T G C G T A A C G T C G T A C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T G A C A G T G C T A C A T G G C A T G C A T C G T A G T C A C A G T G T A C G A T C G A T C G A T C A T G C A G C T T A G C C G T A

PH0015.1_Crx/Jaspar

Match Rank:9
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:GAAAGATAATCC------
--AGGCTAATCCCCAANG
A C T G C G T A C G T A C G T A A C T G C G T A A C G T C G T A C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G

OTX2/MA0712.2/Jaspar

Match Rank:10
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:GAAAGATAATCC---
---NNCTAATCCCNN
A C T G C G T A C G T A C G T A A C T G C G T A A C G T C G T A C G T A A C G T A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T G C A T G C A T G A T C G C A T C G T A G T C A C A G T G A T C G A T C G A T C G C A T C G A T