Information for 1-AAAGTAAC (Motif 3)

C G T A C G T A C T G A A C T G A C G T C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T G T C A G T A C A G C T A C G T A C G T
p-value:1e-5
log p-value:-1.303e+01
Information Content per bp:1.900
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif55.56%
Number of Background Sequences with motif2769.5
Percentage of Background Sequences with motif2.86%
Average Position of motif in Targets97.2 +/- 54.6bp
Average Position of motif in Background100.8 +/- 88.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

DMRTA2/MA1478.1/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AAAGTAAC----
AATGTAACAATT
C G T A C G T A C T G A A C T G A C G T C G T A C G T A A G T C A C G T A C G T A C G T A C G T
T G C A G C T A G C A T C T A G G A C T C G T A C G T A T G A C T C G A C G T A G C A T C G A T

Dmrt1/MA1603.1/Jaspar

Match Rank:2
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----AAAGTAAC
GATACAAAGTATC
A C G T A C G T A C G T A C G T A C G T C G T A C G T A C T G A A C T G A C G T C G T A C G T A A G T C
C T A G G C T A G C A T C G T A G A T C G C T A G C T A C G T A C T A G C G A T C G T A C G A T G T A C

RFX7/MA1554.1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AAAGTAAC-
NTAGCAACG
C G T A C G T A C T G A A C T G A C G T C G T A C G T A A G T C A C G T
C T G A G A C T T C G A T A C G G A T C C T G A C T G A A T G C T A C G

DMRT3/MA0610.1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AAAGTAAC---
AATGTATCAAT
C G T A C G T A C T G A A C T G A C G T C G T A C G T A A G T C A C G T A C G T A C G T
G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AAAGTAAC----
AAACAAACATTC
C G T A C G T A C T G A A C T G A C G T C G T A C G T A A G T C A C G T A C G T A C G T A C G T
C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C

PB0119.1_Foxa2_2/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AAAGTAAC------
AAAAATAACAAACGG
A C G T C G T A C G T A C T G A A C T G A C G T C G T A C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AAAGTAAC-
GCTAARTAAACA
A C G T A C G T A C G T C G T A C G T A C T G A A C T G A C G T C G T A C G T A A G T C A C G T
A T C G G A T C G C A T T C G A G C T A T C G A G C A T G T C A C G T A G T C A G A T C G C T A

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AAAGTAAC------------
GAAGTANCACGAATNMRAGT
C G T A C G T A C T G A A C T G A C G T C G T A C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T

Nr2e1/MA0676.1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AAAGTAAC
AAAAGTCAA
A C G T C G T A C G T A C T G A A C T G A C G T C G T A C G T A A G T C
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AAAGTAAC--
AAAGTAAACA
C G T A C G T A C T G A A C T G A C G T C G T A C G T A A G T C A C G T A C G T
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A