Information for 1-CTARCCAGTAGT (Motif 1)

A G T C C G A T T C G A C T G A A T G C A G T C G T C A C A T G A G C T C T G A A C T G G A C T
Reverse Opposite:
C T G A T G A C A G C T C T G A G T A C A C G T C T A G A T C G G A C T A G C T C G T A C T A G
p-value:1e-9
log p-value:-2.257e+01
Information Content per bp:1.665
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif26.67%
Number of Background Sequences with motif38.2
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets126.0 +/- 31.5bp
Average Position of motif in Background87.9 +/- 77.8bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CTARCCAGTAGT
TYTGACCASWRG-
A C G T A G T C C G A T T C G A C T G A A T G C A G T C G T C A C A T G A G C T C T G A A C T G G A C T
G A C T A G T C C G A T A C T G C T G A T G A C G T A C C G T A A T C G G C A T C T G A C T A G A C G T

Isl1/MA1608.1/Jaspar

Match Rank:2
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CTARCCAGTAGT-
--ATCCATTAGCA
A G T C C G A T T C G A C T G A A T G C A G T C G T C A C A T G A G C T C T G A A C T G G A C T A C G T
A C G T A C G T C T G A A C G T G A T C G T A C C T G A G C A T G A C T G C T A C T A G A G T C T G C A

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:3
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CTARCCAGTAGT
-AAACMATTAN-
A G T C C G A T T C G A C T G A A T G C A G T C G T C A C A T G A G C T C T G A A C T G G A C T
A C G T T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CTARCCAGTAGT
ACTAGCCAATCA-
A C G T A G T C C G A T T C G A C T G A A T G C A G T C G T C A C A T G A G C T C T G A A C T G G A C T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:5
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:CTARCCAGTAGT
---BCMATTAG-
A G T C C G A T T C G A C T G A A T G C A G T C G T C A C A T G A G C T C T G A A C T G G A C T
A C G T A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:6
Score:0.50
Offset:1
Orientation:forward strand
Alignment:CTARCCAGTAGT--------
-TGACCTAAAGTAACCTCTG
A G T C C G A T T C G A C T G A A T G C A G T C G T C A C A T G A G C T C T G A A C T G G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G C T T C A G G T C A G T A C G A T C A G C T T C G A C T G A C T G A C T A G C G A T C T G A T C G A G T A C G T A C A G C T A G T C C A G T A C T G

HMBOX1/MA0895.1/Jaspar

Match Rank:7
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CTARCCAGTAGT
GTTAACTAGN---
A C G T A G T C C G A T T C G A C T G A A T G C A G T C G T C A C A T G A G C T C T G A A C T G G A C T
A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T A C G T A C G T A C G T

VENTX/MA0724.1/Jaspar

Match Rank:8
Score:0.49
Offset:2
Orientation:forward strand
Alignment:CTARCCAGTAGT
--ACCGATTAG-
A G T C C G A T T C G A C T G A A T G C A G T C G T C A C A T G A G C T C T G A A C T G G A C T
A C G T A C G T C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G A C G T

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:CTARCCAGTAGT-----
-TGACCTNTAGTAACCC
A G T C C G A T T C G A C T G A A T G C A G T C G T C A C A T G A G C T C T G A A C T G G A C T A C G T A C G T A C G T A C G T A C G T
A C G T G A C T C T A G T G C A G T A C G A T C A G C T T A C G C A G T C T G A C T A G G C A T C T G A C T G A G T A C G T A C G A T C

PH0080.1_Hoxd8/Jaspar

Match Rank:10
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:CTARCCAGTAGT------
-NAGCCATTAATTANTTA
A G T C C G A T T C G A C T G A A T G C A G T C G T C A C A T G A G C T C T G A A C T G G A C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T G C T A C T A G G A T C G A T C C T G A C G A T G C A T C G T A C G T A C G A T C A G T C T G A G C A T G A C T C G A T G T C A