Information for 8-GAGTGCATAG (Motif 27)

A C T G C G T A A C T G A C G T A C T G A G T C C G T A A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A A C G T A C T G A G T C C G T A A G T C A C G T A G T C
p-value:1e-3
log p-value:-7.421e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif64.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets105.0 +/- 0.0bp
Average Position of motif in Background107.4 +/- 155.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GAGTGCATAG
TTRAGTGSYK--
A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C C G T A A C G T C G T A A C T G
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGCATAG
CTTGAGTGGCT--
A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C C G T A A C G T C G T A A C T G
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGCATAG
TTGAGTGSTT--
A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C C G T A A C G T C G T A A C T G
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T

PB0044.1_Mtf1_1/Jaspar

Match Rank:4
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----GAGTGCATAG-
GGGCCGTGTGCAAAAA
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C C G T A A C G T C G T A A C T G A C G T
C A T G A C T G C T A G G A T C G T A C C A T G C A G T A C T G G A C T C A T G G T A C C G T A T G C A G T C A C T G A G C A T

MSANTD3/MA1523.1/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGCATAG
GTGAGTGNAC--
A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C C G T A A C G T C G T A A C T G
C A T G C A G T C T A G C G T A C T A G G C A T C T A G A C G T T G C A T A G C A C G T A C G T

VDR/MA0693.2/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GAGTGCATAG
TGAGTTCA---
A C G T A C T G C G T A A C T G A C G T A C T G A G T C C G T A A C G T C G T A A C T G
G A C T T C A G C T G A A C T G A C G T C A G T G A T C C T G A A C G T A C G T A C G T

NR1I3/MA1534.1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GAGTGCATAG
AAAGTTCAT--
A C G T A C T G C G T A A C T G A C G T A C T G A G T C C G T A A C G T C G T A A C T G
C G T A C T G A C T G A A C T G A C G T C A G T A G T C C T G A G A C T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:8
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GAGTGCATAG
BTBRAGTGSN---
A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C C G T A A C G T C G T A A C T G
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGCATAG
TTAAGTGCTT--
A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C C G T A A C G T C G T A A C T G
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T

NKX2-2/MA1645.1/Jaspar

Match Rank:10
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GAGTGCATAG
NNNTTGAGTGGNNN-
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C C G T A A C G T C G T A A C T G
C G A T C G A T A G T C A G C T C A G T T A C G C G T A C A T G C G A T C T A G A C T G G C A T C G A T C T G A A C G T