Information for 3-TACCAGGCCATT (Motif 4)

A C G T C G T A A G T C A G T C C G T A A C T G A C T G G T A C A G T C C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A A C G T A C T G A C T G T G A C A G T C A C G T A C T G A C T G A C G T C G T A
p-value:1e-16
log p-value:-3.778e+01
Information Content per bp:1.942
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets108.4 +/- 38.0bp
Average Position of motif in Background99.2 +/- 3.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR1H4/MA1110.1/Jaspar

Match Rank:1
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TACCAGGCCATT--
---NAGGTCATTGA
A C G T C G T A A G T C A G T C C G T A A C T G A C T G G T A C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T T C G A C A T G C A T G A C G T G A T C T C G A A G C T G C A T T C A G T G C A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.59
Offset:5
Orientation:forward strand
Alignment:TACCAGGCCATT---
-----GGCCATTAAC
A C G T C G T A A G T C A G T C C G T A A C T G A C T G G T A C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TACCAGGCCATT
--CTAGGCCT--
A C G T C G T A A G T C A G T C C G T A A C T G A C T G G T A C A G T C C G T A A C G T A C G T
A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TACCAGGCCATT
ATGCCAGACN---
A C G T A C G T C G T A A G T C A G T C C G T A A C T G A C T G G T A C A G T C C G T A A C G T A C G T
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TACCAGGCCATT
--CAAGGHCANV
A C G T C G T A A G T C A G T C C G T A A C T G A C T G G T A C A G T C C G T A A C G T A C G T
A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TACCAGGCCATT
--CNAGGCCT--
A C G T C G T A A G T C A G T C C G T A A C T G A C T G G T A C A G T C C G T A A C G T A C G T
A C G T A C G T A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T

Isl1/MA1608.1/Jaspar

Match Rank:7
Score:0.56
Offset:5
Orientation:forward strand
Alignment:TACCAGGCCATT----
-----ATCCATTAGCA
A C G T C G T A A G T C A G T C C G T A A C T G A C T G G T A C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A A C G T G A T C G T A C C T G A G C A T G A C T G C T A C T A G A G T C T G C A

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TACCAGGCCATT
NTCAAGGTCA--
A C G T C G T A A G T C A G T C C G T A A C T G A C T G G T A C A G T C C G T A A C G T A C G T
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T

SREBF2/MA0596.1/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TACCAGGCCATT
-ATCACCCCAT-
A C G T C G T A A G T C A G T C C G T A A C T G A C T G G T A C A G T C C G T A A C G T A C G T
A C G T C T G A A C G T A G T C C G T A A T G C T A G C A G T C A T G C C G T A A G C T A C G T

NR5A1/MA1540.1/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TACCAGGCCATT
GTCAAGGTCAC-
A C G T C G T A A G T C A G T C C G T A A C T G A C T G G T A C A G T C C G T A A C G T A C G T
A C T G G A C T A T G C C T G A C G T A A C T G A C T G G A C T A G T C C T G A G A T C A C G T