Information for 13-TGAATAGACG (Motif 26)

A C G T A C T G C G T A C G T A A C G T C G T A A C T G C G T A A G T C A C T G
Reverse Opposite:
A G T C A C T G A C G T A G T C A C G T C G T A A C G T A C G T A G T C C G T A
p-value:1e-3
log p-value:-8.287e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets133.0 +/- 0.0bp
Average Position of motif in Background183.9 +/- 11.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TGAATAGACG
ATGMATATDC-
A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G C G T A A G T C A C T G
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TGAATAGACG
TGTCTAGACG
A C G T A C T G C G T A C G T A A C G T C G T A A C T G C G T A A G T C A C T G
C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G

ZSCAN29/MA1602.1/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TGAATAGACG
NCNGTGTAGACG
A C G T A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G C G T A A G T C A C T G
A T G C G A T C A G T C T A C G A G C T C T A G C A G T C T G A A C T G T C G A A G T C T C A G

SMAD5/MA1557.1/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TGAATAGACG
TGTCTAGACA
A C G T A C T G C G T A C G T A A C G T C G T A A C T G C G T A A G T C A C T G
C G A T C T A G C A G T A T G C A C G T T G C A A C T G G T C A A G T C C T G A

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGAATAGACG
ATGAATATTC-
A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G C G T A A G T C A C T G
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T

PB0068.1_Sox1_1/Jaspar

Match Rank:6
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------TGAATAGACG
NNNTATTGAATTGNNN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G C G T A A G T C A C T G
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

PB0178.1_Sox8_2/Jaspar

Match Rank:7
Score:0.60
Offset:-7
Orientation:reverse strand
Alignment:-------TGAATAGACG
NNTNTCATGAATGT---
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G C G T A A G T C A C T G
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----TGAATAGACG--
ACTATGAATGAATGAT
A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G C G T A A G T C A C T G A C G T A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TGAATAGACG
CCAAAAATAG---
A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G C G T A A G T C A C T G
G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGAATAGACG----
ATGAATATTCATGAG
A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G C G T A A G T C A C T G A C G T A C G T A C G T A C G T
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G