Information for 15-CTAGTTAGTC (Motif 29)

A G T C A C G T C G T A A C T G A C G T A C G T C G T A A C T G A C G T A G T C
Reverse Opposite:
A C T G C G T A A G T C A C G T C G T A C G T A A G T C A C G T C G T A A C T G
p-value:1e-3
log p-value:-7.010e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif9.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets132.0 +/- 0.0bp
Average Position of motif in Background121.9 +/- 48.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0040.1_Hmbox1/Jaspar

Match Rank:1
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----CTAGTTAGTC--
GAAAACTAGTTAACATC
A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C T G A C G T A C G T C G T A A C T G A C G T A G T C A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

PH0034.1_Gbx2/Jaspar

Match Rank:2
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----CTAGTTAGTC---
AGCGCTAATTAGCGATT
A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C T G A C G T A C G T C G T A A C T G A C G T A G T C A C G T A C G T A C G T
C G T A T A C G T G A C T C A G A T G C A G C T G T C A G C T A C A G T A C G T C T G A T A C G A G T C T A C G C T G A A C G T C A G T

PH0107.1_Msx2/Jaspar

Match Rank:3
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----CTAGTTAGTC---
ANCGCTAATTGGTCTNN
A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C T G A C G T A C G T C G T A A C T G A C G T A G T C A C G T A C G T A C G T
T C G A C T A G G T A C C T A G G T A C G A C T C G T A C G T A A C G T C G A T C T A G T A C G G A C T A T G C G A C T A C G T A G T C

HMBOX1/MA0895.1/Jaspar

Match Rank:4
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CTAGTTAGTC
ACTAGTTAAC-
A C G T A G T C A C G T C G T A A C T G A C G T A C G T C G T A A C T G A C G T A G T C
T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C A C G T

PH0092.1_Lhx2/Jaspar

Match Rank:5
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----CTAGTTAGTC--
NNNNNCTAATTAGTTTA
A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C T G A C G T A C G T C G T A A C T G A C G T A G T C A C G T A C G T
A T C G C A G T A C G T G T A C T C G A G A T C G A C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C A G T A C G T G C T A

LHX6/MA0658.1/Jaspar

Match Rank:6
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CTAGTTAGTC
NCTAATTAGT-
A C G T A G T C A C G T C G T A A C T G A C G T A C G T C G T A A C T G A C G T A G T C
T C A G A G T C G A C T T C G A T C G A A C G T A G C T T C G A T C A G A G C T A C G T

PH0039.1_Mnx1/Jaspar

Match Rank:7
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----CTAGTTAGTC-
NNNCACTAATTANTNN
A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C T G A C G T A C G T C G T A A C T G A C G T A G T C A C G T
A T G C C T A G A T G C G A T C T G C A A T G C G A C T G T C A C G T A G A C T A C G T C T G A T A C G A C G T T G C A T G A C

PH0033.1_Gbx1/Jaspar

Match Rank:8
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----CTAGTTAGTC---
TNCACTAATTAGTNNNN
A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C T G A C G T A C G T C G T A A C T G A C G T A G T C A C G T A C G T A C G T
C G A T T G C A T G A C T G C A G T A C G A C T G T C A C T G A A G C T A C G T C T G A A C T G A G C T A C T G T A C G G A T C C G T A

LBX1/MA0618.1/Jaspar

Match Rank:9
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CTAGTTAGTC
CTAATTAA--
A G T C A C G T C G T A A C T G A C G T A C G T C G T A A C T G A C G T A G T C
T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A A C G T A C G T

PH0027.1_Emx2/Jaspar

Match Rank:10
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CTAGTTAGTC---
ACCACTAATTAGTGGAC
A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C T G A C G T A C G T C G T A A C T G A C G T A G T C A C G T A C G T A C G T
G C T A T A G C T G A C T C G A A G T C G A C T G T C A G C T A C A G T A C G T C T G A T C A G A G C T A C T G T A C G G C T A A G T C