Information for 3-CATGGCAGCCTA (Motif 3)

A G T C C G T A A C G T A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T C G T A
Reverse Opposite:
A C G T C G T A A C T G A C T G A G T C A C G T A C T G A G T C A G T C C G T A A C G T A C T G
p-value:1e-5
log p-value:-1.162e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0029.1_Hic1_1/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CATGGCAGCCTA--
ACTATGCCAACCTACC
A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T C G T A A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

YY2/MA0748.2/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CATGGCAGCCTA
AGATGGCGGCG--
A C G T A G T C C G T A A C G T A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T C G T A
G T C A T A C G T C G A A G C T T A C G C T A G G A T C A T C G T A C G G T A C T A C G A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CATGGCAGCCTA
TTGCCATGGCAACN--
A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T C G T A
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CATGGCAGCCTA
TTGCCATGGCAACC--
A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T C G T A
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T A C G T

RFX3/MA0798.2/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CATGGCAGCCTA
TNCCATAGCAACNN-
A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T C G T A
G A C T C A T G A G T C G A T C G T C A A G C T C T G A C T A G G A T C C T G A T C G A G A T C T G A C T C A G A C G T

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:6
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CATGGCAGCCTA
--TGCCAGCB--
A G T C C G T A A C G T A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T C G T A
A C G T A C G T G A C T C T A G A T G C A G T C G T C A T A C G A T G C A T C G A C G T A C G T

RFX1/MA0509.2/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CATGGCAGCCTA
TNCCATAGCAACNN-
A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T C G T A
G A C T C A T G A G T C G A T C G T C A G A C T T C G A C T A G G A T C C T G A T C G A G A T C G T C A T C A G A C G T

NFIC/MA0161.2/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CATGGCAGCCTA
TACTTGGCAGA---
A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T C G T A
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A A C G T A C G T A C G T

ZFP42/MA1651.1/Jaspar

Match Rank:9
Score:0.61
Offset:-7
Orientation:forward strand
Alignment:-------CATGGCAGCCTA--
GTTCCAAAATGGCTGCCTCCG
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T C G T A A C G T A C G T
A T C G G C A T G C A T G T A C G T A C C T G A C G T A T C G A C T G A A G C T T A C G A C T G G T A C A C G T A T C G G A T C A G T C G A C T A T G C A T G C T C A G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CATGGCAGCCTA
----BCAGACWA
A G T C C G T A A C G T A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T C G T A
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A