Information for 21-TCAGGTCACATA (Motif 28)

A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A A G T C C G T A A C G T C G T A
Reverse Opposite:
A C G T C G T A A C G T A C T G A C G T A C T G C G T A A G T C A G T C A C G T A C T G C G T A
p-value:1e-3
log p-value:-8.385e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets153.0 +/- 0.0bp
Average Position of motif in Background156.9 +/- 16.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:TCAGGTCACATA
TRAGGTCA----
A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A A G T C C G T A A C G T C G T A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:2
Score:0.69
Offset:1
Orientation:forward strand
Alignment:TCAGGTCACATA
-AAGGTCAC---
A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A A G T C C G T A A C G T C G T A
A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T

SIX1/MA1118.1/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TCAGGTCACATA
TATCAGGTTAC---
A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A A G T C C G T A A C G T C G T A
C A G T T G C A G C A T G A T C C G T A C A T G C T A G G C A T C G A T G C T A G T A C A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.67
Offset:2
Orientation:forward strand
Alignment:TCAGGTCACATA
--AGGTCA----
A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A A G T C C G T A A C G T C G T A
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T

SIX2/MA1119.1/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TCAGGTCACATA-
GTATCAGGTTTCAGNN
A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A A G T C C G T A A C G T C G T A A C G T
C T A G C A G T T G C A G C A T G A T C C G T A C A T G C T A G G A C T C A G T C G A T G T A C G C T A A C T G C G A T C G A T

NR2C2(var.2)/MA1536.1/Jaspar

Match Rank:6
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TCAGGTCACATA
-GAGGTCAT---
A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A A G T C C G T A A C G T C G T A
A C G T T C A G T C G A A C T G A C T G A C G T A G T C C T G A G C A T A C G T A C G T A C G T

NR2F2/MA1111.1/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TCAGGTCACATA
CAAAGGTCAAA--
A C G T A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A A G T C C G T A A C G T C G T A
G A T C G T C A C G T A C T G A C A T G C T A G A C G T G A T C C T G A C T G A C T G A A C G T A C G T

THRB(var.3)/MA1576.1/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TCAGGTCACATA-------
TAAGGTCACGTNAGGTCAC
A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T T C G A C T G A C A T G C T A G C G A T G T A C G T C A A G T C T A C G A G C T T C G A T C G A T A C G T C A G C G A T T A G C C T G A G A T C

NR2C1/MA1535.1/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TCAGGTCACATA
CGAGGTCAC---
A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A A G T C C G T A A C G T C G T A
G T A C C T A G T C G A A C T G A C T G A C G T A T G C C T G A G A T C A C G T A C G T A C G T

USF2/MA0526.3/Jaspar

Match Rank:10
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TCAGGTCACATA----
--NNGTCACATGACNN
A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C T A G T C A G A G C T T A G C G T C A A G T C T C G A C A G T T A C G T C G A A G T C G A T C G T C A