Information for 3-AGCAATCGGC (Motif 9)

C T G A C T A G A T G C C G T A G C T A A C G T G A T C A C T G C T A G A G T C
Reverse Opposite:
A C T G A G T C G T A C C T A G G T C A C G A T A C G T A T C G A G T C G A C T
p-value:1e-9
log p-value:-2.112e+01
Information Content per bp:1.769
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif5.00%
Number of Background Sequences with motif219.7
Percentage of Background Sequences with motif0.48%
Average Position of motif in Targets93.0 +/- 54.4bp
Average Position of motif in Background101.0 +/- 61.8bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGCAATCGGC
AGCCAATCGG-
A C G T C T G A C T A G A T G C C G T A G C T A A C G T G A T C A C T G C T A G A G T C
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AGCAATCGGC---
-SSAATCCACANN
C T G A C T A G A T G C C G T A G C T A A C G T G A T C A C T G C T A G A G T C A C G T A C G T A C G T
A C G T A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

Dux/MA0611.1/Jaspar

Match Rank:3
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AGCAATCGGC
-CCAATCAA-
C T G A C T A G A T G C C G T A G C T A A C G T G A T C A C T G C T A G A G T C
A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T

MSGN1/MA1524.1/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AGCAATCGGC-
NNACATATGGCN
A C G T C T G A C T A G A T G C C G T A G C T A A C G T G A T C A C T G C T A G A G T C A C G T
A T C G T C A G T G C A A T G C T C G A G C A T C G T A A G C T A T C G T A C G A G T C T A C G

NFYA/MA0060.3/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGCAATCGGC
AACCAATCAGA
A C G T C T G A C T A G A T G C C G T A G C T A A C G T G A T C A C T G C T A G A G T C
T C G A C T G A A G T C G A T C G C T A T C G A G A C T T A G C T C G A T A C G T G C A

SOX9/MA0077.1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AGCAATCGGC
GAACAATGG--
A C G T C T G A C T A G A T G C C G T A G C T A A C G T G A T C A C T G C T A G A G T C
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AGCAATCGGC
MRSCACTYAA-
A C G T C T G A C T A G A T G C C G T A G C T A A C G T G A T C A C T G C T A G A G T C
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T

Sox5/MA0087.1/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AGCAATCGGC
NAACAAT----
A C G T C T G A C T A G A T G C C G T A G C T A A C G T G A T C A C T G C T A G A G T C
G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T

MTF1/MA0863.1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AGCAATCGGC--
TTTGCACACGGCAC
A C G T A C G T C T G A C T A G A T G C C G T A G C T A A C G T G A T C A C T G C T A G A G T C A C G T A C G T
C A G T A C G T G A C T T C A G G T A C C G T A T A G C G T C A A G T C C A T G C A T G A G T C T G C A G A T C

PH0024.1_Dlx5/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AGCAATCGGC----
GGGGTAATTAGCTCTG
A C G T A C G T C T G A C T A G A T G C C G T A G C T A A C G T G A T C A C T G C T A G A G T C A C G T A C G T A C G T A C G T
A T C G A T C G T C A G T C A G G A C T G T C A C G T A G A C T C A G T C T G A T A C G A G T C A C G T T G A C A C G T A T C G