Information for 2-CAAWASMSMYTA (Motif 2)

A G T C C G T A C G T A C G T A C G T A A T G C G T A C A T G C G T A C A G C T A C G T C G T A
Reverse Opposite:
A C G T C G T A C T G A A C T G A T C G A C T G A T C G A C G T C G A T A C G T A C G T A C T G
p-value:1e-4
log p-value:-1.022e+01
Information Content per bp:1.817
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif166.1
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets99.0 +/- 34.3bp
Average Position of motif in Background101.2 +/- 97.3bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0135.1_Hoxa3_2/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CAAWASMSMYTA---
-AAAAACCATTAAGG
A G T C C G T A C G T A C G T A C G T A A T G C G T A C A T G C G T A C A G C T A C G T C G T A A C G T A C G T A C G T
A C G T T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

SOX15/MA1152.1/Jaspar

Match Rank:2
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CAAWASMSMYTA
AAAACAATAG------
A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A C G T A A T G C G T A C A T G C G T A C A G C T A C G T C G T A
C G T A C T G A C T G A G C T A A G T C C G T A G T C A G C A T C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:3
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CAAWASMSMYTA
ACAAAGGNBCCT-
A C G T A G T C C G T A C G T A C G T A C G T A A T G C G T A C A T G C G T A C A G C T A C G T C G T A
G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T A C G T

PH0088.1_Isl2/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CAAWASMSMYTA----
CAAAATCAATTAATTT
A G T C C G T A C G T A C G T A C G T A A T G C G T A C A T G C G T A C A G C T A C G T C G T A A C G T A C G T A C G T A C G T
G T A C G C T A G T C A G T C A G T C A A G C T G A T C G T C A G T C A G A C T G A C T C G T A C T G A C A G T C G A T G A C T

PROX1/MA0794.1/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CAAWASMSMYTA
CAAGACGCCTTA
A G T C C G T A C G T A C G T A C G T A A T G C G T A C A T G C G T A C A G C T A C G T C G T A
A G T C C T G A G C T A C T A G T C G A G A T C C A T G G A T C A G T C C A G T A G C T T C G A

PH0006.1_Barhl2/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CAAWASMSMYTA----
AAAAACCAATTAAGAA
A G T C C G T A C G T A C G T A C G T A A T G C G T A C A T G C G T A C A G C T A C G T C G T A A C G T A C G T A C G T A C G T
G T C A G T C A G T C A C T G A T C G A G A T C A G T C C T G A G C T A A C G T A C G T C G T A C T G A A T C G G C T A G C T A

BARX2/MA1471.1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CAAWASMSMYTA-
-AAAAACCATTAC
A G T C C G T A C G T A C G T A C G T A A T G C G T A C A T G C G T A C A G C T A C G T C G T A A C G T
A C G T C T G A C G T A G C T A C G T A T G C A G A T C T G A C T C G A C A G T G A C T C G T A T A G C

Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer

Match Rank:8
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----CAAWASMSMYTA
BMRVACAAWGGV-----
A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A C G T A A T G C G T A C A T G C G T A C A G C T A C G T C G T A
A T G C T G A C C T G A T A C G C G T A A G T C C G T A C G T A C G T A C T A G T C A G T G C A A C G T A C G T A C G T A C G T A C G T

VENTX/MA0724.1/Jaspar

Match Rank:9
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CAAWASMSMYTA-
----ACCGATTAG
A G T C C G T A C G T A C G T A C G T A A T G C G T A C A T G C G T A C A G C T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G

PH0108.1_Msx3/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CAAWASMSMYTA----
CAAAACCAATTAATTT
A G T C C G T A C G T A C G T A C G T A A T G C G T A C A T G C G T A C A G C T A C G T C G T A A C G T A C G T A C G T A C G T
T G A C T C G A G T C A C T G A T C G A A T G C A G T C C T G A G T C A C G A T G A C T C G T A C T G A A C G T G A C T G C A T