Information for 3-TATRTMAGTACC (Motif 3)

C A G T C G T A A C G T T C A G G A C T T G C A C G T A A T C G A G C T T C G A A G T C T A G C
Reverse Opposite:
A C T G A C T G A G C T C T G A A T G C C G A T A C G T C G T A A G T C C G T A C G A T G T C A
p-value:1e-4
log p-value:-1.057e+01
Information Content per bp:1.606
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif55.56%
Number of Background Sequences with motif4360.8
Percentage of Background Sequences with motif4.74%
Average Position of motif in Targets118.4 +/- 33.7bp
Average Position of motif in Background101.4 +/- 79.6bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TBP/MA0108.2/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TATRTMAGTACC--
GTATAAAAGGCGGGG
A C G T C A G T C G T A A C G T T C A G G A C T T G C A C G T A A T C G A G C T T C G A A G T C T A G C A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TATRTMAGTACC--
GTATAAAAGGCGGGG
A C G T C A G T C G T A A C G T T C A G G A C T T G C A C G T A A T C G A G C T T C G A A G T C T A G C A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

PB0163.1_Six6_2/Jaspar

Match Rank:3
Score:0.56
Offset:-7
Orientation:reverse strand
Alignment:-------TATRTMAGTACC
ANNNGGATATATCCNNN--
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T C G T A A C G T T C A G G A C T T G C A C G T A A T C G A G C T T C G A A G T C T A G C
G T C A C T A G C T A G A G T C T C A G C A T G T C G A A C G T T G C A A G C T C T G A A G C T T G A C A T G C T A G C G C T A A C G T A C G T A C G T

PB0198.1_Zfp128_2/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TATRTMAGTACC
NNTATANATATACN
A C G T A C G T C A G T C G T A A C G T T C A G G A C T T G C A C G T A A T C G A G C T T C G A A G T C T A G C
A T C G A C T G G C A T C T G A G C A T C T G A G C A T C T G A G A C T C G T A G A C T C G T A G T A C G T C A

PB0104.1_Zscan4_1/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TATRTMAGTACC----
NTNTATGTGCACATNNN
A C G T C A G T C G T A A C G T T C A G G A C T T G C A C G T A A T C G A G C T T C G A A G T C T A G C A C G T A C G T A C G T A C G T
C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A

GCM1/MA0646.1/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TATRTMAGTACC
CATGCGGGTAC-
C A G T C G T A A C G T T C A G G A C T T G C A C G T A A T C G A G C T T C G A A G T C T A G C
A G T C T C G A G C A T T C A G G T A C C A T G A C T G A T C G A G C T T C G A A T G C A C G T

HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer

Match Rank:7
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--TATRTMAGTACC
RTTATGYAAB----
A C G T A C G T C A G T C G T A A C G T T C A G G A C T T G C A C G T A A T C G A G C T T C G A A G T C T A G C
T C A G G A C T C A G T C T G A A G C T C T A G G A C T T G C A C T G A A G T C A C G T A C G T A C G T A C G T

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:8
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---TATRTMAGTACC
YSTTATCT-------
A C G T A C G T A C G T C A G T C G T A A C G T T C A G G A C T T G C A C G T A A T C G A G C T T C G A A G T C T A G C
A G C T A T C G A G C T C G A T C T G A C G A T A T G C C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:9
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---TATRTMAGTACC
GNCTATAAAAGG---
A C G T A C G T A C G T C A G T C G T A A C G T T C A G G A C T T G C A C G T A A T C G A G C T T C G A A G T C T A G C
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T A C G T A C G T

PH0117.1_Nkx3-1/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TATRTMAGTACC-----
NATTTAAGTACTTANNA
C A G T C G T A A C G T T C A G G A C T T G C A C G T A A T C G A G C T T C G A A G T C T A G C A C G T A C G T A C G T A C G T A C G T
T A G C G C T A C G A T G A C T C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T A G G C A T G C T A