Information for 13-TGGGTGCTAT (Motif 25)

A C G T A C T G A C T G A C T G A C G T A C T G A G T C A C G T C G T A A C G T
Reverse Opposite:
C G T A A C G T C G T A A C T G A G T C C G T A A G T C A G T C A G T C C G T A
p-value:1e-7
log p-value:-1.730e+01
Information Content per bp:1.530
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif8.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets57.8 +/- 17.3bp
Average Position of motif in Background112.7 +/- 66.9bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TGGGTGCTAT
YSTGGGTGGTCT
A C G T A C G T A C G T A C T G A C T G A C T G A C G T A C T G A G T C A C G T C G T A A C G T
A G T C A T C G G C A T C A T G A C T G A T C G C G A T C T A G A C T G A G C T T G A C G A C T

RFX1/MA0509.2/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TGGGTGCTAT----
CTGTTGCTATGGCA
A C G T A C T G A C T G A C T G A C G T A C T G A G T C A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A G T C C A G T C T A G A G C T G A C T C T A G G A T C A G C T C T G A C A G T C T A G T C A G G T A C C T G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TGGGTGCTAT----
NNCGTTGCTATGGNN
A C G T A C G T A C T G A C T G A C T G A C G T A C T G A G T C A C G T C G T A A C G T A C G T A C G T A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TGGGTGCTAT----
NCCGTTGCTANGNGN
A C G T A C G T A C T G A C T G A C T G A C G T A C T G A G T C A C G T C G T A A C G T A C G T A C G T A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TGGGTGCTAT
CGTGGGTGGTCC
A C G T A C G T A C G T A C T G A C T G A C T G A C G T A C T G A G T C A C G T C G T A A C G T
A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C

PB0208.1_Zscan4_2/Jaspar

Match Rank:6
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----TGGGTGCTAT-
NNNNTTGTGTGCTTNN
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C T G A C G T A C T G A G T C A C G T C G T A A C G T A C G T
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

PB0054.1_Rfx3_1/Jaspar

Match Rank:7
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TGGGTGCTAT--------
NTNNNNNGTTGCTANGGNNCANA
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C T G A C G T A C T G A G T C A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

RFX3/MA0798.2/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TGGGTGCTAT----
CGGTTGCTATGGCA
A C G T A C T G A C T G A C T G A C G T A C T G A G T C A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A G T C A C T G C T A G A G C T G A C T C T A G G A T C G A C T T C G A C A G T C T A G T C A G G T A C C T G A

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TGGGTGCTAT
TTGCGTGCVA-
A C G T A C G T A C T G A C T G A C T G A C G T A C T G A G T C A C G T C G T A A C G T
A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:10
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----TGGGTGCTAT-
NNGCGTGTGTGCNGCN
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C T G A C G T A C T G A G T C A C G T C G T A A C G T A C G T
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T