Information for 23-GTTCATAGTCTC (Motif 21)

A C T G A C G T A C G T A G T C C G T A A C G T C G T A A C T G A C G T A G T C A C G T A G T C
Reverse Opposite:
A C T G C G T A A C T G C G T A A G T C A C G T C G T A A C G T A C T G C G T A C G T A A G T C
p-value:1e-4
log p-value:-9.905e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets145.0 +/- 0.0bp
Average Position of motif in Background180.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR1I3/MA1534.1/Jaspar

Match Rank:1
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GTTCATAGTCTC
AAAGTTCAT------
A C G T A C G T A C G T A C T G A C G T A C G T A G T C C G T A A C G T C G T A A C T G A C G T A G T C A C G T A G T C
C G T A C T G A C T G A A C T G A C G T C A G T A G T C C T G A G A C T A C G T A C G T A C G T A C G T A C G T A C G T

VDR/MA0693.2/Jaspar

Match Rank:2
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GTTCATAGTCTC
TGAGTTCA-------
A C G T A C G T A C G T A C T G A C G T A C G T A G T C C G T A A C G T C G T A A C T G A C G T A G T C A C G T A G T C
G A C T T C A G C T G A A C T G A C G T C A G T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GTTCATAGTCTC
-CTCATTGTC--
A C T G A C G T A C G T A G T C C G T A A C G T C G T A A C T G A C G T A G T C A C G T A G T C
A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:4
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GTTCATAGTCTC
--CCATTGTTTT
A C T G A C G T A C G T A G T C C G T A A C G T C G T A A C T G A C G T A G T C A C G T A G T C
A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GTTCATAGTCTC
TTTNATTGCY--
A C T G A C G T A C G T A G T C C G T A A C G T C G T A A C T G A C G T A G T C A C G T A G T C
A C G T A C G T C G A T A C G T G T C A A C G T C A G T C T A G A T G C G A T C A C G T A C G T

TCF7/MA0769.2/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GTTCATAGTCTC
ANATCAAAGNN--
A C G T A C T G A C G T A C G T A G T C C G T A A C G T C G T A A C T G A C G T A G T C A C G T A G T C
C G T A A T G C G C T A G C A T T G A C G C T A G C T A C G T A A C T G T C A G T G C A A C G T A C G T

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GTTCATAGTCTC
TTTCATKGCC--
A C T G A C G T A C G T A G T C C G T A A C G T C G T A A C T G A C G T A G T C A C G T A G T C
G C A T A C G T C G A T A G T C G T C A A G C T C A G T C T A G A T G C G A T C A C G T A C G T

SOX13/MA1120.1/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GTTCATAGTCTC
NNCCATTGTNN-
A C T G A C G T A C G T A G T C C G T A A C G T C G T A A C T G A C G T A G T C A C G T A G T C
C G A T A C T G A G T C G A T C C G T A G A C T C G A T T C A G G A C T A G C T G A C T A C G T

SOX2/MA0143.4/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GTTCATAGTCTC
NNCCATTGTNN-
A C T G A C G T A C G T A G T C C G T A A C G T C G T A A C T G A C G T A G T C A C G T A G T C
C G A T G C A T G A T C G A T C G C T A A G C T C G A T C T A G C G A T G C A T G C A T A C G T

RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GTTCATAGTCTC
AGGTCAAGGTCA-
A C G T A C T G A C G T A C G T A G T C C G T A A C G T C G T A A C T G A C G T A G T C A C G T A G T C
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T