Information for 3-CGCTCGAA (Motif 26)

A G T C A C T G A G T C A C G T A G T C A C T G C G T A C G T A
Reverse Opposite:
A C G T A C G T A G T C A C T G C G T A A C T G A G T C A C T G
p-value:1e-6
log p-value:-1.464e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.43%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets119.5 +/- 56.5bp
Average Position of motif in Background81.7 +/- 52.2bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:1
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CGCTCGAA
NSCACTYVAV
A C G T A C G T A G T C A C T G A G T C A C G T A G T C A C T G C G T A C G T A
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CGCTCGAA
NGCTN---
A G T C A C T G A G T C A C G T A G T C A C T G C G T A C G T A
T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T

E2F(E2F)/Hela-CellCycle-Expression/Homer

Match Rank:3
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CGCTCGAA--
TTCGCGCGAAAA
A C G T A C G T A G T C A C T G A G T C A C G T A G T C A C T G C G T A C G T A A C G T A C G T
A G C T A G C T T A G C A T C G A G T C A C T G A T G C A T C G T C G A C T G A T C G A C T G A

POL001.1_MTE/Jaspar

Match Rank:4
Score:0.62
Offset:-10
Orientation:reverse strand
Alignment:----------CGCTCGAA-
NCGACCGCTCCGCTCGAAA
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C A C G T A G T C A C T G C G T A C G T A A C G T
T C A G A T G C C T A G C G T A A T G C A G T C A C T G G A C T A C G T A T G C A T G C A C T G A G T C A C G T A G T C A C T G C T G A C T G A T C G A

ZBTB12/MA1649.1/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CGCTCGAA---
ATCTGGAACCC
A G T C A C T G A G T C A C G T A G T C A C T G C G T A C G T A A C G T A C G T A C G T
T C G A A G C T T A G C A G C T T C A G C A T G T G C A C T G A G A T C G T A C A G T C

E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CGCTCGAA--
GGCGGGAAAH
A G T C A C T G A G T C A C G T A G T C A C T G C G T A C G T A A C G T A C G T
T A C G T A C G G T A C A T C G T A C G T A C G G T C A C T G A C G T A G A C T

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CGCTCGAA---
TGGCGGGAAAHB
A C G T A G T C A C T G A G T C A C G T A G T C A C T G C G T A C G T A A C G T A C G T A C G T
C G A T T A C G A T C G G T A C A C T G A T C G A C T G C T G A C T G A T G C A G C T A A T C G

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CGCTCGAA
AASCACTCAA-
A C G T A C G T A C G T A G T C A C T G A G T C A C G T A G T C A C T G C G T A C G T A
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CGCTCGAA----
ATAACCACTTGAAAATT
A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C A C G T A G T C A C T G C G T A C G T A A C G T A C G T A C G T A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

NKX2-8/MA0673.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CGCTCGAA
CCACTTGAA
A C G T A G T C A C T G A G T C A C G T A G T C A C T G C G T A C G T A
T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A