Information for 2-CCAACCTTCA (Motif 6)

A G T C G T A C C G T A G T C A A G T C A G T C A G C T A G C T A T G C C G T A
Reverse Opposite:
A C G T A T C G C T G A C T G A A C T G A C T G A C G T A C G T A C T G A C T G
p-value:1e-5
log p-value:-1.162e+01
Information Content per bp:1.918
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif28.57%
Number of Background Sequences with motif622.9
Percentage of Background Sequences with motif1.00%
Average Position of motif in Targets89.0 +/- 36.5bp
Average Position of motif in Background100.1 +/- 82.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CCAACCTTCA
-CAAGCTT--
A G T C G T A C C G T A G T C A A G T C A G T C A G C T A G C T A T G C C G T A
A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------CCAACCTTCA
ACTATGCCAACCTACC
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C C G T A G T C A A G T C A G T C A G C T A G C T A T G C C G T A
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCAACCTTCA
YCATCMATCA
A G T C G T A C C G T A G T C A A G T C A G T C A G C T A G C T A T G C C G T A
G A T C G T A C C T G A A C G T G A T C G T C A C T G A A C G T G A T C G C T A

PB0161.1_Rxra_2/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CCAACCTTCA---
NNNNCAACCTTCGNGA
A C G T A C G T A C G T A G T C G T A C C G T A G T C A A G T C A G T C A G C T A G C T A T G C C G T A A C G T A C G T A C G T
G T C A C A T G G C A T C T G A A G T C T C G A T G C A T G A C G A T C C G A T C G A T A G T C C A T G A G T C A C T G G T C A

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCAACCTTCA
CCAACTGCCA
A G T C G T A C C G T A G T C A A G T C A G T C A G C T A G C T A T G C C G T A
A G T C G A T C C G T A C G T A A G T C A C G T A C T G G A T C G A T C C T G A

POL008.1_DCE_S_I/Jaspar

Match Rank:6
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CCAACCTTCA
----GCTTCC
A G T C G T A C C G T A G T C A A G T C A G T C A G C T A G C T A T G C C G T A
A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C

ZNF449/MA1656.1/Jaspar

Match Rank:7
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------CCAACCTTCA
CCAAGCCCAACCAG--
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C C G T A G T C A A G T C A G T C A G C T A G C T A T G C C G T A
G T A C T G A C T G C A G C T A C T A G T A G C G T A C G T A C G C T A C T G A T G A C G T A C G T C A T A C G A C G T A C G T

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CCAACCTTCA
--AACCGANA
A G T C G T A C C G T A G T C A A G T C A G T C A G C T A G C T A T G C C G T A
A C G T A C G T C G T A C G T A T A G C A G T C C T A G G C T A G T A C G C T A

ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCAACCTTCA--
GTGACCTTGRVN
A G T C G T A C C G T A G T C A A G T C A G T C A G C T A G C T A T G C C G T A A C G T A C G T
C A T G G A C T T A C G G T C A G T A C G A T C G A C T A G C T A T C G T C G A T A C G T A G C

PH0134.1_Pbx1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCAACCTTCA-------
TCACCCATCAATAAACA
A G T C G T A C C G T A G T C A A G T C A G T C A G C T A G C T A T G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A