Information for 1-ACTTTAAGGTAT (Motif 1)

C G T A A G T C A C G T A G C T A C G T C G T A C T G A C T A G A C T G A C G T C G T A A C G T
Reverse Opposite:
C G T A A C G T C G T A G T A C A G T C A G C T A C G T C G T A C T G A C G T A C T A G C G A T
p-value:1e-16
log p-value:-3.782e+01
Information Content per bp:1.859
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.20%
Number of Background Sequences with motif6.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets85.6 +/- 42.5bp
Average Position of motif in Background93.9 +/- 44.0bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0088.1_Isl2/Jaspar

Match Rank:1
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:ACTTTAAGGTAT----
AAATTAATTGATTTNG
C G T A A G T C A C G T A G C T A C G T C G T A C T G A C T A G A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T
C T G A G C T A G T C A G A C T G C A T C G T A C G T A A C G T A C G T C T A G T C G A C A G T C A G T C A G T C G A T C A T G

PH0165.1_Six6_1/Jaspar

Match Rank:2
Score:0.55
Offset:2
Orientation:forward strand
Alignment:ACTTTAAGGTAT-------
--AATAGGGTATCAATTAT
C G T A A G T C A C G T A G C T A C G T C G T A C T G A C T A G A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A G C T A C G A T T C G A T C A G A C T G T C A G A C G T C T G A A C G T G A T C C G T A G T C A C G A T G C A T G C T A A C G T

PH0166.1_Six6_2/Jaspar

Match Rank:3
Score:0.55
Offset:2
Orientation:forward strand
Alignment:ACTTTAAGGTAT-------
--AATAGGGTATCAATATT
C G T A A G T C A C G T A G C T A C G T C G T A C T G A C T A G A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C G T A C G A T T C G A C T A G C A T G T C A G C A G T C T G A A C G T G A T C G C T A G C T A G A C T G C T A G A C T A C G T

PB0059.1_Six6_1/Jaspar

Match Rank:4
Score:0.53
Offset:2
Orientation:forward strand
Alignment:ACTTTAAGGTAT-------
--AATAGGGTATCATATAT
C G T A A G T C A C G T A G C T A C G T C G T A C T G A C T A G A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A G C T A C G A T T C G A C T A G A C T G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C G T A C G A T G C T A G A C T

PH0161.1_Six1/Jaspar

Match Rank:5
Score:0.53
Offset:2
Orientation:forward strand
Alignment:ACTTTAAGGTAT-------
--GATGGGGTATCATTTTT
C G T A A G T C A C G T A G C T A C G T C G T A C T G A C T A G A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G G C T A C A G T T C A G C T A G A T C G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C A G T G C A T A C G T C A G T

PH0167.1_Tcf1/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:ACTTTAAGGTAT------
-NTTTTAGTTAACNNAGN
C G T A A G T C A C G T A G C T A C G T C G T A C T G A C T A G A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T G C A G A C T G C A T A C G T G A C T C T G A A T C G G C A T C G A T C G T A C T G A T A G C A G C T T C G A T G C A T A C G C T A G

PB0082.1_Tcf3_1/Jaspar

Match Rank:7
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----ACTTTAAGGTAT-
NNTTCCTTTGATCTANA
A C G T A C G T A C G T A C G T C G T A A G T C A C G T A G C T A C G T C G T A C T G A C T A G A C T G A C G T C G T A A C G T A C G T
C G A T C G A T C G A T A G C T A G T C A G T C G C A T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T C T G A

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:8
Score:0.53
Offset:0
Orientation:forward strand
Alignment:ACTTTAAGGTAT
ACTTTCGTTTCT
C G T A A G T C A C G T A G C T A C G T C G T A C T G A C T A G A C T G A C G T C G T A A C G T
T G C A A T G C A C G T A C G T A C G T A T G C C T A G A C G T A C G T A G C T G A T C A G C T

PH0075.1_Hoxd10/Jaspar

Match Rank:9
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----ACTTTAAGGTAT-
NTNAATTTTATTGNATT
A C G T A C G T A C G T A C G T C G T A A G T C A C G T A G C T A C G T C G T A C T G A C T A G A C T G A C G T C G T A A C G T A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-ACTTTAAGGTAT
DGWTTTATGRCN-
A C G T C G T A A G T C A C G T A G C T A C G T C G T A C T G A C T A G A C T G A C G T C G T A A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T