Information for 8-AGGATCTTTAAT (Motif 10)

C G T A A C T G A C T G C G T A A C G T A G T C A C G T A C G T A C G T C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T C G T A C G T A C G T A A C T G C G T A A C G T A G T C A G T C A C G T
p-value:1e-3
log p-value:-9.045e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets133.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3a/MA0151.1/Jaspar

Match Rank:1
Score:0.68
Offset:6
Orientation:reverse strand
Alignment:AGGATCTTTAAT
------TTTAAT
C G T A A C T G A C T G C G T A A C G T A G T C A C G T A C G T A C G T C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T

PB0181.1_Spdef_2/Jaspar

Match Rank:2
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----AGGATCTTTAAT
CTACTAGGATGTNNTN-
A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C T G C G T A A C G T A G T C A C G T A C G T A C G T C G T A C G T A A C G T
A G T C G C A T C G T A T G A C C G A T T C G A T A C G C A T G C G T A G A C T C T A G G A C T C G A T T C G A G C A T G A T C A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:3
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:AGGATCTTTAAT----
------TTTAATTGCN
C G T A A C T G A C T G C G T A A C G T A G T C A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

Lhx3/MA0135.1/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AGGATCTTTAAT--
-GATTAATTAATTT
C G T A A C T G A C T G C G T A A C G T A G T C A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T
A C G T T C A G C T G A G C A T C G A T C T G A C G T A A C G T C G A T C G T A C G T A C G A T A C G T G C A T

TCF7/MA0769.2/Jaspar

Match Rank:5
Score:0.58
Offset:3
Orientation:forward strand
Alignment:AGGATCTTTAAT--
---TCCTTTGATGT
C G T A A C T G A C T G C G T A A C G T A G T C A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C T G A C G C A T C G A T C G A T A C T G C G T A C G A T T A C G G C A T

PH0150.1_Pou4f3/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AGGATCTTTAAT----
GACNTCATTAATAANN
C G T A A C T G A C T G C G T A A C G T A G T C A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C T A G C T G A T G A C G A T C C A G T G T A C C G T A C G A T C G A T C G T A C T G A C G A T C G T A G T C A A G T C C G A T

NKX6-2/MA0675.1/Jaspar

Match Rank:7
Score:0.58
Offset:7
Orientation:reverse strand
Alignment:AGGATCTTTAAT---
-------TTAATTAN
C G T A A C T G A C T G C G T A A C G T A G T C A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T G A C T C G T A C G T A C G A T C A G T C T G A T A C G

PH0073.1_Hoxc9/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGGATCTTTAAT---
GGAGGTCATTAATTAT
A C G T C G T A A C T G A C T G C G T A A C G T A G T C A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

NKX6-3/MA1530.1/Jaspar

Match Rank:9
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:AGGATCTTTAAT---
------TTTAATGAN
C G T A A C T G A C T G C G T A A C G T A G T C A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G A T A G C T C T G A C G T A A C G T T C A G C T G A A T C G

NKX6-1/MA0674.1/Jaspar

Match Rank:10
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:AGGATCTTTAAT---
-------TTAATTAN
C G T A A C T G A C T G C G T A A C G T A G T C A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A G C T C G T A C G T A C A G T C A G T C T G A A T G C