Information for 2-AVCTGCBAAGGC (Motif 2)

C G T A T A C G T G A C A C G T A C T G A G T C A C T G C G T A C G T A A T C G A C T G A G T C
Reverse Opposite:
A C T G A G T C T A G C C G A T A C G T T A G C T C A G A G T C G T C A A C T G A G T C A C G T
p-value:1e-7
log p-value:-1.712e+01
Information Content per bp:1.757
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif37.50%
Number of Background Sequences with motif593.6
Percentage of Background Sequences with motif1.32%
Average Position of motif in Targets98.0 +/- 48.0bp
Average Position of motif in Background104.6 +/- 59.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AVCTGCBAAGGC
AAGGTGTKAA---
A C G T C G T A T A C G T G A C A C G T A C T G A G T C A C T G C G T A C G T A A T C G A C T G A G T C
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T A C G T A C G T

PH0140.1_Pknox1/Jaspar

Match Rank:2
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----AVCTGCBAAGGC
AAAGACCTGTCAATCC
A C G T A C G T A C G T A C G T C G T A T A C G T G A C A C G T A C T G A G T C A C T G C G T A C G T A A T C G A C T G A G T C
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C

PH0102.1_Meis1/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----AVCTGCBAAGGC
AACGAGCTGTCAATAC
A C G T A C G T A C G T A C G T C G T A T A C G T G A C A C G T A C T G A G T C A C T G C G T A C G T A A T C G A C T G A G T C
C G T A C G T A T A C G A T C G C T G A A T C G T G A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A G A T C

PH0105.1_Meis3/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----AVCTGCBAAGGC
AATTACCTGTCAATAC
A C G T A C G T A C G T A C G T C G T A T A C G T G A C A C G T A C T G A G T C A C T G C G T A C G T A A T C G A C T G A G T C
C G T A C T G A C G A T A C G T C T G A A T G C G A T C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G C A G T A C

PH0170.1_Tgif2/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----AVCTGCBAAGGC
AACTAGCTGTCAATAC
A C G T A C G T A C G T A C G T C G T A T A C G T G A C A C G T A C T G A G T C A C T G C G T A C G T A A T C G A C T G A G T C
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C

PH0104.1_Meis2/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----AVCTGCBAAGGC
AAAGACCTGTCAATAC
A C G T A C G T A C G T A C G T C G T A T A C G T G A C A C G T A C T G A G T C A C T G C G T A C G T A A T C G A C T G A G T C
G C T A C G T A T C A G A T C G C T G A A T G C G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T G T C A A G T C

Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AVCTGCBAAGGC
DAGGTGTBAA---
A C G T C G T A T A C G T G A C A C G T A C T G A G T C A C T G C G T A C G T A A T C G A C T G A G T C
C T A G C T G A T C A G A T C G A G C T C A T G G A C T A G T C C T G A T G C A A C G T A C G T A C G T

NFIC/MA0161.2/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AVCTGCBAAGGC
-NNTGCCAAGNN
C G T A T A C G T G A C A C G T A C T G A G T C A C T G C G T A C G T A A T C G A C T G A G T C
A C G T G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AVCTGCBAAGGC
CCAACTGCCA----
A C G T A C G T C G T A T A C G T G A C A C G T A C T G A G T C A C T G C G T A C G T A A T C G A C T G A G T C
A G T C G A T C C G T A C G T A A G T C A C G T A C T G G A T C G A T C C T G A A C G T A C G T A C G T A C G T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AVCTGCBAAGGC
AGGTGTTAAT--
C G T A T A C G T G A C A C G T A C T G A G T C A C T G C G T A C G T A A T C G A C T G A G T C
C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T A C G T