Information for 4-AGGTGTATGDTA (Motif 4)

C T G A A C T G T A C G C G A T C T A G A C G T C G T A A C G T A C T G C A G T A G C T C G T A
Reverse Opposite:
A C G T C T G A G C T A A G T C C G T A A C G T G T C A A G T C C G T A A T G C G T A C A G C T
p-value:1e-4
log p-value:-1.024e+01
Information Content per bp:1.756
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif42.86%
Number of Background Sequences with motif1077.2
Percentage of Background Sequences with motif1.02%
Average Position of motif in Targets125.2 +/- 37.0bp
Average Position of motif in Background100.8 +/- 89.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.60
Offset:5
Orientation:forward strand
Alignment:AGGTGTATGDTA-----
-----TATGCWAATBAV
C T G A A C T G T A C G C G A T C T A G A C G T C G T A A C G T A C T G C A G T A G C T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:2
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:AGGTGTATGDTA-
-----RHTGWCAR
C T G A A C T G T A C G C G A T C T A G A C G T C G T A A C G T A C T G C A G T A G C T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A

POU3F4/MA0789.1/Jaspar

Match Rank:3
Score:0.59
Offset:5
Orientation:forward strand
Alignment:AGGTGTATGDTA--
-----TATGCAAAT
C T G A A C T G T A C G C G A T C T A G A C G T C G T A A C G T A C T G C A G T A G C T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:4
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:AGGTGTATGDTA
----ARNTGACA
C T G A A C T G T A C G C G A T C T A G A C G T C G T A A C G T A C T G C A G T A G C T C G T A
A C G T A C G T A C G T A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A

POU5F1B/MA0792.1/Jaspar

Match Rank:5
Score:0.58
Offset:5
Orientation:forward strand
Alignment:AGGTGTATGDTA--
-----TATGCAAAT
C T G A A C T G T A C G C G A T C T A G A C G T C G T A A C G T A C T G C A G T A G C T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T

POU2F1/MA0785.1/Jaspar

Match Rank:6
Score:0.57
Offset:3
Orientation:forward strand
Alignment:AGGTGTATGDTA---
---AATATGCAAATT
C T G A A C T G T A C G C G A T C T A G A C G T C G T A A C G T A C T G C A G T A G C T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T

POU3F1/MA0786.1/Jaspar

Match Rank:7
Score:0.57
Offset:4
Orientation:forward strand
Alignment:AGGTGTATGDTA----
----TTATGCAAATTA
C T G A A C T G T A C G C G A T C T A G A C G T C G T A A C G T A C T G C A G T A G C T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

POU3F2/MA0787.1/Jaspar

Match Rank:8
Score:0.57
Offset:4
Orientation:forward strand
Alignment:AGGTGTATGDTA----
----TTATGCAAATTA
C T G A A C T G T A C G C G A T C T A G A C G T C G T A A C G T A C T G C A G T A G C T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A

POU3F3/MA0788.1/Jaspar

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:AGGTGTATGDTA----
---ATTATGCTAATTT
C T G A A C T G T A C G C G A T C T A G A C G T C G T A A C G T A C T G C A G T A G C T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A C G A T C G A T C G T A A C G T C A T G A G T C G C A T C G T A C T G A G C A T C G A T C G A T

OLIG3/MA0827.1/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AGGTGTATGDTA
-ANCATATGGT-
C T G A A C T G T A C G C G A T C T A G A C G T C G T A A C G T A C T G C A G T A G C T C G T A
A C G T C T G A T G C A G T A C C T G A A C G T T G C A G A C T C A T G A C T G A G C T A C G T