Information for 3-GGGTACTTTGTA (Motif 3)

C A T G A C T G T A C G A C G T G C T A A T G C A C G T A C G T C G A T A C T G A C G T C G T A
Reverse Opposite:
A C G T C G T A A G T C C G T A T C G A C G T A A T C G C A G T C G T A A T G C G T A C G A T C
p-value:1e-6
log p-value:-1.407e+01
Information Content per bp:1.750
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif189.4
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets63.0 +/- 28.6bp
Average Position of motif in Background101.9 +/- 72.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Dmrt1/MA1603.1/Jaspar

Match Rank:1
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:GGGTACTTTGTA--
-GNTACTTTGTATC
C A T G A C T G T A C G A C G T G C T A A T G C A C G T A C G T C G A T A C T G A C G T C G T A A C G T A C G T
A C G T C A T G G C T A G C A T G C T A G A T C G C A T C G A T C G A T C T A G G C A T C G T A C G A T G A T C

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GGGTACTTTGTA
AGGVNCCTTTGT-
A C G T C A T G A C T G T A C G A C G T G C T A A T G C A C G T A C G T C G A T A C T G A C G T C G T A
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T

DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GGGTACTTTGTA--
YDGHTACAWTGTADC
A C G T C A T G A C T G T A C G A C G T G C T A A T G C A C G T A C G T C G A T A C T G A C G T C G T A A C G T A C G T
G A C T C G A T C A T G G C T A G C A T C G T A A G T C G C T A G C A T C G A T T A C G G C A T C G T A C A G T G A T C

SOX10/MA0442.2/Jaspar

Match Rank:4
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:GGGTACTTTGTA--
---NNCTTTGTTNN
C A T G A C T G T A C G A C G T G C T A A T G C A C G T A C G T C G A T A C T G A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A G C T T G A C C G A T C G A T C G A T T C A G C G A T A C G T G A C T G A C T

DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GGGTACTTTGTA--
TWGHWACAWTGTWDC
A C G T C A T G A C T G T A C G A C G T G C T A A T G C A C G T A C G T C G A T A C T G A C G T C G T A A C G T A C G T
G C A T C G A T C T A G G C T A G C A T C G T A G A T C G C T A C G A T C G A T C T A G C G A T C G T A C G A T G A T C

PB0166.1_Sox12_2/Jaspar

Match Rank:6
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GGGTACTTTGTA-----
-ANTCCTTTGTCTNNNN
C A T G A C T G T A C G A C G T G C T A A T G C A C G T A C G T C G A T A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GGGTACTTTGTA-----
TNNTCCTTTGTTCTNNT
C A T G A C T G T A C G A C G T G C T A A T G C A C G T A C G T C G A T A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

SOX4/MA0867.2/Jaspar

Match Rank:8
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GGGTACTTTGTA-
---NCCTTTGTTC
C A T G A C T G T A C G A C G T G C T A A T G C A C G T A C G T C G A T A C T G A C G T C G T A A C G T
A C G T A C G T A C G T A G T C A G T C G A T C C G A T A G C T A G C T T A C G C G A T A G C T G A T C

PB0061.1_Sox11_1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GGGTACTTTGTA-----
NNNTCCTTTGTTCTNNN
C A T G A C T G T A C G A C G T G C T A A T G C A C G T A C G T C G A T A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GGGTACTTTGTA--
----CCWTTGTYYB
C A T G A C T G T A C G A C G T G C T A A T G C A C G T A C G T C G A T A C T G A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G