Information for 2-GDGTACYCTAGH (Motif 2)

C A T G C T G A C T A G C G A T T C G A G A T C G A T C G T A C G A C T C T G A A T C G G T C A
Reverse Opposite:
C A G T T A G C G A C T C T G A C A T G C T A G C T A G A G C T G C T A G A T C G A C T G T A C
p-value:1e-18
log p-value:-4.150e+01
Information Content per bp:1.509
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif0.17%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets100.3 +/- 50.8bp
Average Position of motif in Background174.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX9/MA0077.1/Jaspar

Match Rank:1
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GDGTACYCTAGH
--GAACAATGG-
C A T G C T G A C T A G C G A T T C G A G A T C G A T C G T A C G A C T C T G A A T C G G T C A
A C G T A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:2
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GDGTACYCTAGH
ACTCCAAGTACTTGGAA
A C G T A C G T A C G T A C G T A C G T C A T G C T G A C T A G C G A T T C G A G A T C G A T C G T A C G A C T C T G A A T C G G T C A
T C G A G T A C C G A T A T G C T A G C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A C T G T C A G T G C A G T C A

Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GDGTACYCTAGH
VVRRAACAATGG-
A C G T C A T G C T G A C T A G C G A T T C G A G A T C G A T C G T A C G A C T C T G A A T C G G T C A
T G A C T A G C T C A G T C G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T A C G A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GDGTACYCTAGH
--GAACAATGGN
C A T G C T G A C T A G C G A T T C G A G A T C G A T C G T A C G A C T C T G A A T C G G T C A
A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

SOX2/MA0143.4/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GDGTACYCTAGH-
--AAACAATGGAA
C A T G C T G A C T A G C G A T T C G A G A T C G A T C G T A C G A C T C T G A A T C G G T C A A C G T
A C G T A C G T C G T A C G T A G C T A G A T C G C T A T C G A C G A T C T A G C T A G C G T A G C T A

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:6
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GDGTACYCTAGH
--RAACAATGGN
C A T G C T G A C T A G C G A T T C G A G A T C G A T C G T A C G A C T C T G A A T C G G T C A
A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

SOX13/MA1120.1/Jaspar

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GDGTACYCTAGH-
--AAACAATGGCA
C A T G C T G A C T A G C G A T T C G A G A T C G A T C G T A C G A C T C T G A A T C G G T C A A C G T
A C G T A C G T C T G A T C G A C T G A A G T C G C T A C T G A G C A T C T A G T C A G T G A C G C T A

SOX8/MA0868.2/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GDGTACYCTAGH
-AGAACAATGG-
C A T G C T G A C T A G C G A T T C G A G A T C G A T C G T A C G A C T C T G A A T C G G T C A
A C G T T G C A C T A G C T G A C G T A A G T C C G T A G T C A G C A T C T A G T A C G A C G T

PB0051.1_Osr2_1/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GDGTACYCTAGH----
ATGTACAGTAGCAAAG
C A T G C T G A C T A G C G A T T C G A G A T C G A T C G T A C G A C T C T G A A T C G G T C A A C G T A C G T A C G T A C G T
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GDGTACYCTAGH
-VRAACAATGG-
C A T G C T G A C T A G C G A T T C G A G A T C G A T C G T A C G A C T C T G A A T C G G T C A
A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T