Information for 23-CTCTTAAATGTC (Motif 29)

A G T C A C G T A G T C A C G T A C G T C G T A C G T A C G T A A C G T A C T G A C G T A G T C
Reverse Opposite:
A C T G C G T A A G T C C G T A A C G T A C G T A C G T C G T A C G T A A C T G C G T A A C T G
p-value:1e-3
log p-value:-8.078e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif8.33%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets194.0 +/- 0.0bp
Average Position of motif in Background76.6 +/- 6.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CTCTTAAATGTC
AAAGCTCGTAAAATTT
A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C G T A C G T C G T A C G T A C G T A A C G T A C T G A C G T A G T C
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CTCTTAAATGTC
AAACCTCGTAAAATTT
A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C G T A C G T C G T A C G T A C G T A A C G T A C T G A C G T A G T C
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

HOXC13/MA0907.1/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CTCTTAAATGTC
GCTCGTAAAAA--
A C G T A G T C A C G T A G T C A C G T A C G T C G T A C G T A C G T A A C G T A C T G A C G T A G T C
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A A C G T A C G T

NR4A1/MA1112.2/Jaspar

Match Rank:4
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CTCTTAAATGTC---
---TTAAAGGTCAAA
A G T C A C G T A G T C A C G T A C G T C G T A C G T A C G T A A C G T A C T G A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C A G T G C A T C T G A C T G A T C G A C A T G C A T G A C G T A G T C C T G A T C G A C T G A

BARHL2/MA0635.1/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CTCTTAAATGTC
--GCTAAACGGT
A G T C A C G T A G T C A C G T A C G T C G T A C G T A C G T A A C G T A C T G A C G T A G T C
A C G T A C G T T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T

Hoxa11/MA0911.1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTCTTAAATGTC
GGTCGTAAAATT-
A C G T A G T C A C G T A G T C A C G T A C G T C G T A C G T A C G T A A C G T A C T G A C G T A G T C
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CTCTTAAATGTC-----
-TCTCAAAGGTCACGAG
A G T C A C G T A G T C A C G T A C G T C G T A C G T A C G T A A C G T A C T G A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

PH0085.1_Irx4/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CTCTTAAATGTC----
NNTTTTACATGTANNNT
A C G T A G T C A C G T A G T C A C G T A C G T C G T A C G T A C G T A A C G T A C T G A C G T A G T C A C G T A C G T A C G T A C G T
G C A T T A C G G C A T G C A T C A G T C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G A C T C G T A G C A T G C A T

PB0053.1_Rara_1/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CTCTTAAATGTC-----
-TCTCAAAGGTCACCTG
A G T C A C G T A G T C A C G T A C G T C G T A C G T A C G T A A C G T A C T G A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

Nkx3-2/MA0122.3/Jaspar

Match Rank:10
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CTCTTAAATGTC
ATAACCACTTAAA----
A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C G T A C G T C G T A C G T A C G T A A C G T A C T G A C G T A G T C
C G T A C G A T C G T A C G T A T G A C G A T C G C T A G T A C G C A T G A C T G C T A C G T A G C T A A C G T A C G T A C G T A C G T