Information for 3-TCCACTGGCCTC (Motif 3)

A C G T A G T C A G T C C G T A A G T C A C G T A C T G A C T G A G T C A G T C A C G T A G T C
Reverse Opposite:
A C T G C G T A A C T G A C T G A G T C A G T C C G T A A C T G A C G T A C T G C T A G C G T A
p-value:1e-13
log p-value:-3.116e+01
Information Content per bp:1.970
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets119.6 +/- 51.8bp
Average Position of motif in Background104.2 +/- 49.2bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TCCACTGGCCTC
-NNACTTGCCTT
A C G T A G T C A G T C C G T A A G T C A C G T A C T G A C T G A G T C A G T C A C G T A G T C
A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

NFYB/MA0502.2/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TCCACTGGCCTC
CTCATTGGCCAG
A C G T A G T C A G T C C G T A A G T C A C G T A C T G A C T G A G T C A G T C A C G T A G T C
A T G C A G C T A T G C G C T A A G C T C A G T C A T G C T A G A G T C G A T C T G C A T C A G

Plagl1/MA1615.1/Jaspar

Match Rank:3
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TCCACTGGCCTC----
---NNTGGCCCCAGNN
A C G T A G T C A G T C C G T A A G T C A C G T A C T G A C T G A G T C A G T C A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C T A G C A G C T T A C G C A T G A T G C A T G C A G T C A T G C C G T A A T C G A T C G A T C G

Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer

Match Rank:4
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:TCCACTGGCCTC---
-----KGGCCYCWTD
A C G T A G T C A G T C C G T A A G T C A C G T A C T G A C T G A G T C A G T C A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G C A T G T A C G G T A C A T G C G A T C A T G C G C T A A G C T C T G A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:TCCACTGGCCTC-
-----TGACCTYA
A C G T A G T C A G T C C G T A A G T C A C G T A C T G A C T G A G T C A G T C A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

ZNF354C/MA0130.1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TCCACTGGCCTC
ATCCAC-------
A C G T A C G T A G T C A G T C C G T A A G T C A C G T A C T G A C T G A G T C A G T C A C G T A G T C
T G C A G C A T A G T C A G T C C G T A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TCCACTGGCCTC
AGGTCANTGACCTN
A C G T A C G T A C G T A G T C A G T C C G T A A G T C A C G T A C T G A C T G A G T C A G T C A C G T A G T C
T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:TCCACTGGCCTC--
----CTGACCTTTG
A C G T A G T C A G T C C G T A A G T C A C G T A C T G A C T G A G T C A G T C A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:9
Score:0.57
Offset:5
Orientation:forward strand
Alignment:TCCACTGGCCTC-
-----AGGCCTAG
A C G T A G T C A G T C C G T A A G T C A C G T A C T G A C T G A G T C A G T C A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:10
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:TCCACTGGCCTC-
-----TGACCYCT
A C G T A G T C A G T C C G T A A G T C A C G T A C T G A C T G A G T C A G T C A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T