Information for 5-GRSAAGTYRC (Motif 9)

C A T G C T A G T A G C C G T A C T G A A C T G A C G T A G T C C T A G A T G C
Reverse Opposite:
A T C G A G T C T C A G C G T A T G A C A G C T G C A T A T C G A G T C G T A C
p-value:1e-5
log p-value:-1.175e+01
Information Content per bp:1.716
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif13.00%
Number of Background Sequences with motif1425.2
Percentage of Background Sequences with motif2.94%
Average Position of motif in Targets89.3 +/- 48.3bp
Average Position of motif in Background101.3 +/- 59.5bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.38
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GRSAAGTYRC
AAGGCAAGTGT-
A C G T A C G T C A T G C T A G T A G C C G T A C T G A A C T G A C G T A G T C C T A G A T G C
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GRSAAGTYRC
--AAGGTCAC
C A T G C T A G T A G C C G T A C T G A A C T G A C G T A G T C C T A G A T G C
A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

NR2C2(var.2)/MA1536.1/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GRSAAGTYRC
--GAGGTCAT
C A T G C T A G T A G C C G T A C T G A A C T G A C G T A G T C C T A G A T G C
A C G T A C G T T C A G T C G A A C T G A C T G A C G T A G T C C T G A G C A T

Nr2e1/MA0676.1/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GRSAAGTYRC
-AAAAGTCAA
C A T G C T A G T A G C C G T A C T G A A C T G A C G T A G T C C T A G A T G C
A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A

PB0053.1_Rara_1/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GRSAAGTYRC---
TCTCAAAGGTCACCTG
A C G T A C G T A C G T C A T G C T A G T A G C C G T A C T G A A C T G A C G T A G T C C T A G A T G C A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GRSAAGTYRC
-AGRGGTCA-
C A T G C T A G T A G C C G T A C T G A A C T G A C G T A G T C C T A G A T G C
A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T

PB0155.1_Osr2_2/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GRSAAGTYRC----
NNTGTAGGTAGCANNT
A C G T A C G T C A T G C T A G T A G C C G T A C T G A A C T G A C G T A G T C C T A G A T G C A C G T A C G T A C G T A C G T
A C T G C T A G C G A T C A T G A G C T C G T A C T A G A C T G C G A T C T G A T A C G A G T C C T G A C T G A C T A G G A C T

NR2C1/MA1535.1/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GRSAAGTYRC
-CGAGGTCAC
C A T G C T A G T A G C C G T A C T G A A C T G A C G T A G T C C T A G A T G C
A C G T G T A C C T A G T C G A A C T G A C T G A C G T A T G C C T G A G A T C

RFX7/MA1554.1/Jaspar

Match Rank:9
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GRSAAGTYRC---
----CGTTGCTAT
C A T G C T A G T A G C C G T A C T G A A C T G A C G T A G T C C T A G A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A T C G A G C T A G C T C T A G A T G C A G C T C T G A G A C T

CREB3L4/MA1474.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GRSAAGTYRC-
TGCCACGTCACC
A C G T C A T G C T A G T A G C C G T A C T G A A C T G A C G T A G T C C T A G A T G C A C G T
A G C T C A T G G T A C G T A C T C G A A G T C T C A G A G C T T A G C T C G A A G T C A T G C