Information for 9-CTCATAAAGCTT (Motif 11)

A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G A G T C A C G T A C G T
Reverse Opposite:
C G T A C G T A A C T G A G T C A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C T G
p-value:1e-4
log p-value:-1.025e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets81.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CTCATAAAGCTT
AAAGCTCGTAAAATTT
A C G T A C G T A C G T A C G T A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G A G T C A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

Nr2e3/MA0164.1/Jaspar

Match Rank:2
Score:0.70
Offset:6
Orientation:reverse strand
Alignment:CTCATAAAGCTT-
------AAGCTTG
A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G

PH0048.1_Hoxa13/Jaspar

Match Rank:3
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----CTCATAAAGCTT
AAACCTCGTAAAATTT
A C G T A C G T A C G T A C G T A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G A G T C A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CTCATAAAGCTT
CCYMATAAAA---
A C G T A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G A G T C A C G T A C G T
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T

HOXC13/MA0907.1/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTCATAAAGCTT
GCTCGTAAAAA--
A C G T A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G A G T C A C G T A C G T
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTCATAAAGCTT
NGYCATAAAWCH-
A C G T A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G A G T C A C G T A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTCATAAAGCTT
CYHATAAAAN--
A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G A G T C A C G T A C G T
T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C A C G T A C G T

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CTCATAAAGCTT
NCYAATAAAA---
A C G T A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G A G T C A C G T A C G T
C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTCATAAAGCTT--
NNCCATAAATCATNN
A C G T A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G A G T C A C G T A C G T A C G T A C G T
C T G A T C A G G A T C G T A C T C G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G C A T G C A T G A C T

Hoxa11/MA0911.1/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CTCATAAAGCTT
GGTCGTAAAATT-
A C G T A G T C A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G A G T C A C G T A C G T
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T A C G T