Information for 2-CTAGCCCAABTT (Motif 2)

A T G C C G A T C T G A A C T G G T A C A G T C A T G C C G T A C T G A A C T G A C G T A C G T
Reverse Opposite:
C G T A C G T A T A G C A G C T A C G T A T C G C T A G A C T G G T A C A G C T C G T A A T C G
p-value:1e-5
log p-value:-1.353e+01
Information Content per bp:1.735
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif40.00%
Number of Background Sequences with motif686.5
Percentage of Background Sequences with motif0.90%
Average Position of motif in Targets109.0 +/- 35.4bp
Average Position of motif in Background99.5 +/- 66.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SIX1/MA1118.1/Jaspar

Match Rank:1
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CTAGCCCAABTT--
---TATCAGGTTAC
A T G C C G A T C T G A A C T G G T A C A G T C A T G C C G T A C T G A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T T G C A G C A T G A T C C G T A C A T G C T A G G C A T C G A T G C T A G T A C

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:2
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CTAGCCCAABTT--
--GKVTCADRTTWC
A T G C C G A T C T G A A C T G G T A C A G T C A T G C C G T A C T G A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C

SIX2/MA1119.1/Jaspar

Match Rank:3
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CTAGCCCAABTT------
--GTATCAGGTTTCAGNN
A T G C C G A T C T G A A C T G G T A C A G T C A T G C C G T A C T G A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G C A G T T G C A G C A T G A T C C G T A C A T G C T A G G A C T C A G T C G A T G T A C G C T A A C T G C G A T C G A T

ZNF449/MA1656.1/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CTAGCCCAABTT-
CCAAGCCCAACCAG
A C G T A T G C C G A T C T G A A C T G G T A C A G T C A T G C C G T A C T G A A C T G A C G T A C G T A C G T
G T A C T G A C T G C A G C T A C T A G T A G C G T A C G T A C G C T A C T G A T G A C G T A C G T C A T A C G

Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer

Match Rank:5
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CTAGCCCAABTT---
VGGTVTCAGRTTWCA
A T G C C G A T C T G A A C T G G T A C A G T C A T G C C G T A C T G A A C T G A C G T A C G T A C G T A C G T A C G T
T A G C T C A G T C A G C A G T T C A G A C G T A G T C T C G A C T A G C T A G A C G T A C G T C G A T G T A C G T C A

NR6A1/MA1541.1/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CTAGCCCAABTT---
GTCAAGTTCAAGGTCAA
A C G T A C G T A T G C C G A T C T G A A C T G G T A C A G T C A T G C C G T A C T G A A C T G A C G T A C G T A C G T A C G T A C G T
A C T G A G C T A T G C C T G A T G C A C A T G C A G T A G C T A G T C C G T A G T C A C A T G C A T G A C G T A G T C C T G A C G T A

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CTAGCCCAABTT--
--GKMTCADRTTWC
A T G C C G A T C T G A A C T G G T A C A G T C A T G C C G T A C T G A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:8
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CTAGCCCAABTT
NNHYTGACCTAGWTT
A C G T A C G T A C G T A T G C C G A T C T G A A C T G G T A C A G T C A T G C C G T A C T G A A C T G A C G T A C G T
A C G T G A T C G A C T G A T C A C G T A C T G T C G A A G T C A G T C A G C T C T G A T C A G C G A T C G A T G C A T

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CTAGCCCAABTT
BTGACCTAVTTW
A T G C C G A T C T G A A C T G G T A C A G T C A T G C C G T A C T G A A C T G A C G T A C G T
A G T C A C G T T C A G T C G A A G T C A G T C A G C T C T G A T C A G C G A T G C A T G C A T

NR1I3/MA1534.1/Jaspar

Match Rank:10
Score:0.52
Offset:4
Orientation:forward strand
Alignment:CTAGCCCAABTT-
----ATGAACTTT
A T G C C G A T C T G A A C T G G T A C A G T C A T G C C G T A C T G A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A G A C T T C A G G T C A G T C A A G T C A G C T G A C T G C A T