Information for 4-TTGTTAGTATGD (Motif 4)

A G C T A C G T A T C G C A G T A G C T C T G A A C T G A G C T C T G A A C G T A C T G C G A T
Reverse Opposite:
G C T A A G T C C G T A A G C T C T G A G T A C A G C T C T G A G T C A A T G C G T C A C T G A
p-value:1e-6
log p-value:-1.454e+01
Information Content per bp:1.724
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif30.77%
Number of Background Sequences with motif380.9
Percentage of Background Sequences with motif0.52%
Average Position of motif in Targets143.5 +/- 42.5bp
Average Position of motif in Background103.0 +/- 69.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RFX3/MA0798.2/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TTGTTAGTATGD--
CGGTTGCTATGGCA
A G C T A C G T A T C G C A G T A G C T C T G A A C T G A G C T C T G A A C G T A C T G C G A T A C G T A C G T
A G T C A C T G C T A G A G C T G A C T C T A G G A T C G A C T T C G A C A G T C T A G T C A G G T A C C T G A

PB0122.1_Foxk1_2/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TTGTTAGTATGD-
NNNTGTTGTTGTTNG
A C G T A C G T A G C T A C G T A T C G C A G T A G C T C T G A A C T G A G C T C T G A A C G T A C T G C G A T A C G T
C T G A C A T G C T A G G C A T C T A G G C A T A C G T C T A G A G C T A C G T C T A G G A C T C A G T C G A T C A T G

RFX1/MA0509.2/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TTGTTAGTATGD--
CTGTTGCTATGGCA
A G C T A C G T A T C G C A G T A G C T C T G A A C T G A G C T C T G A A C G T A C T G C G A T A C G T A C G T
A G T C C A G T C T A G A G C T G A C T C T A G G A T C A G C T C T G A C A G T C T A G T C A G G T A C C T G A

PB0119.1_Foxa2_2/Jaspar

Match Rank:4
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TTGTTAGTATGD
NCNTTTGTTATTTNN-
A C G T A C G T A C G T A C G T A G C T A C G T A T C G C A G T A G C T C T G A A C T G A G C T C T G A A C G T A C T G C G A T
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T A C G T

PB0120.1_Foxj1_2/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TTGTTAGTATGD---
GTNTTGTTGTGANNT
A G C T A C G T A T C G C A G T A G C T C T G A A C T G A G C T C T G A A C G T A C T G C G A T A C G T A C G T A C G T
C A T G A G C T T A C G G A C T G C A T A C T G A C G T G A C T C T A G A G C T A C T G T G C A A G T C T C G A C G A T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TTGTTAGTATGD
CTGTTGCTAGGS
A G C T A C G T A T C G C A G T A G C T C T G A A C T G A G C T C T G A A C G T A C T G C G A T
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

NR1D2/MA1532.1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TTGTTAGTATGD---
GGGTTAGTGGGTCAT
A G C T A C G T A T C G C A G T A G C T C T G A A C T G A G C T C T G A A C G T A C T G C G A T A C G T A C G T A C G T
T C A G C A T G C A T G A C G T G A C T C G T A A T C G A C G T C T A G C A T G C T A G C A G T A G T C C T G A C A G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TTGTTAGTATGD--
NNCGTTGCTATGGNN
A C G T A G C T A C G T A T C G C A G T A G C T C T G A A C T G A G C T C T G A A C G T A C T G C G A T A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TTGTTAGTATGD---
-GGTTGCCATGGCAA
A G C T A C G T A T C G C A G T A G C T C T G A A C T G A G C T C T G A A C G T A C T G C G A T A C G T A C G T A C G T
A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TTGTTAGTATGD--
NCCGTTGCTANGNGN
A C G T A G C T A C G T A T C G C A G T A G C T C T G A A C T G A G C T C T G A A C G T A C T G C G A T A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G