Information for 5-KCATCTARATAT (Motif 5)

A C G T G T A C C G T A A C G T A G T C A G C T C G T A C T A G G T C A A C G T C G T A A C G T
Reverse Opposite:
G T C A G C A T C G T A A C G T G A C T C G A T C T G A T A C G C G T A A C G T A C T G G T C A
p-value:1e-5
log p-value:-1.169e+01
Information Content per bp:1.728
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif1528.3
Percentage of Background Sequences with motif2.01%
Average Position of motif in Targets137.2 +/- 43.1bp
Average Position of motif in Background100.2 +/- 70.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU5F1B/MA0792.1/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:KCATCTARATAT
-TATGCAAAT--
A C G T G T A C C G T A A C G T A G T C A G C T C G T A C T A G G T C A A C G T C G T A A C G T
A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:KCATCTARATAT-
-WATGCAAATGAG
A C G T G T A C C G T A A C G T A G T C A G C T C G T A C T A G G T C A A C G T C G T A A C G T A C G T
A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.64
Offset:1
Orientation:forward strand
Alignment:KCATCTARATAT-
-TATGCWAATBAV
A C G T G T A C C G T A A C G T A G T C A G C T C G T A C T A G G T C A A C G T C G T A A C G T A C G T
A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

POU5F1/MA1115.1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:KCATCTARATAT
ATATGCAAATT-
A C G T G T A C C G T A A C G T A G T C A G C T C G T A C T A G G T C A A C G T C G T A A C G T
C G T A G C A T T C G A G A C T C T A G A G T C G C T A C T G A G C T A G C A T C A G T A C G T

POU3F1/MA0786.1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:KCATCTARATAT
TTATGCAAATTA
A C G T G T A C C G T A A C G T A G T C A G C T C G T A C T A G G T C A A C G T C G T A A C G T
C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

FOXB1/MA0845.1/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:KCATCTARATAT
-TATGTAAATAT
A C G T G T A C C G T A A C G T A G T C A G C T C G T A C T A G G T C A A C G T C G T A A C G T
A C G T G C A T C T G A C G A T C T A G G A C T T G C A G C T A C G T A A G C T C T G A G C A T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:KCATCTARATAT
TTATGCAAAT--
A C G T G T A C C G T A A C G T A G T C A G C T C G T A C T A G G T C A A C G T C G T A A C G T
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:KCATCTARATAT-
ATATGCAAATNNN
A C G T G T A C C G T A A C G T A G T C A G C T C G T A C T A G G T C A A C G T C G T A A C G T A C G T
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

POU2F1/MA0785.1/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-KCATCTARATAT
AATATGCAAATT-
A C G T A C G T G T A C C G T A A C G T A G T C A G C T C G T A C T A G G T C A A C G T C G T A A C G T
G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--KCATCTARATAT--
TTGTATGCAAATTAGA
A C G T A C G T A C G T G T A C C G T A A C G T A G T C A G C T C G T A C T A G G T C A A C G T C G T A A C G T A C G T A C G T
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A