Information for 13-CCTCCAACCATC (Motif 24)

A G T C A G T C A C G T A G T C A G T C C G T A C G T A A G T C A G T C C G T A A C G T A G T C
Reverse Opposite:
A C T G C G T A A C G T A C T G A C T G A C G T A C G T A C T G A C T G C G T A A C T G A C T G
p-value:1e-3
log p-value:-7.960e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.88%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets104.0 +/- 0.0bp
Average Position of motif in Background174.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RREB1/MA0073.1/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCTCCAACCATC--------
CCCCAAACCACCCCCCCCCA
A G T C A G T C A C G T A G T C A G T C C G T A C G T A A G T C A G T C C G T A A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T A C G T A C G T A C A G T C G T C A G T C A G T C A G T A C A G T C C G T A G T A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C T A G C T G A C

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:2
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CCTCCAACCATC-
---YCATCMATCA
A G T C A G T C A C G T A G T C A G T C C G T A C G T A A G T C A G T C C G T A A C G T A G T C A C G T
A C G T A C G T A C G T G A T C G T A C C T G A A C G T G A T C G T C A C T G A A C G T G A T C G C T A

NFYC/MA1644.1/Jaspar

Match Rank:3
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CCTCCAACCATC
-AGCCAATCAGA
A G T C A G T C A C G T A G T C A G T C C G T A C G T A A G T C A G T C C G T A A C G T A G T C
A C G T T C G A C T A G A G T C G T A C G C T A T C G A G A C T T A G C T C G A T A C G T G C A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:4
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CCTCCAACCATC--
--GYCATCMATCAT
A G T C A G T C A C G T A G T C A G T C C G T A C G T A A G T C A G T C C G T A A C G T A G T C A C G T A C G T
A C G T A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

Dux/MA0611.1/Jaspar

Match Rank:5
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CCTCCAACCATC
---CCAATCAA-
A G T C A G T C A C G T A G T C A G T C C G T A C G T A A G T C A G T C C G T A A C G T A G T C
A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T

KLF4/MA0039.4/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CCTCCAACCATC
CGCCCCACCCCC-
A C G T A G T C A G T C A C G T A G T C A G T C C G T A C G T A A G T C A G T C C G T A A C G T A G T C
T A G C A T C G G A T C G A T C G T A C G T A C C T G A A T G C T A G C G A T C G T A C A T G C A C G T

NFYA/MA0060.3/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CCTCCAACCATC
-AACCAATCAGA
A G T C A G T C A C G T A G T C A G T C C G T A C G T A A G T C A G T C C G T A A C G T A G T C
A C G T T C G A C T G A A G T C G A T C G C T A T C G A G A C T T A G C T C G A T A C G T G C A

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:8
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CCTCCAACCATC-------
--CCNNACCATCTGGCCTN
A G T C A G T C A C G T A G T C A G T C C G T A C G T A A G T C A G T C C G T A A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G T C T A G C T A C G C T A G T C G A G T A C A G T C C G T A A G C T T G A C A G C T C A T G A T C G G T A C G A T C A G C T C A G T

Sox5/MA0087.1/Jaspar

Match Rank:9
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:CCTCCAACCATC
----NAACAAT-
A G T C A G T C A C G T A G T C A G T C C G T A C G T A A G T C A G T C C G T A A C G T A G T C
A C G T A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:10
Score:0.53
Offset:3
Orientation:forward strand
Alignment:CCTCCAACCATC--------
---TCACCCATCAATAAACA
A G T C A G T C A C G T A G T C A G T C C G T A C G T A A G T C A G T C C G T A A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A