Information for 20-AGGCACACAAAA (Motif 36)

C G T A A C T G A C T G A G T C C G T A A G T C C G T A A G T C C G T A C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T A C G T A C T G A C G T A C T G A C G T A C T G A G T C A G T C A C G T
p-value:1e-3
log p-value:-7.514e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif7.14%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets105.0 +/- 0.0bp
Average Position of motif in Background85.2 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--AGGCACACAAAA--
CGAAGCACACAAAATA
A C G T A C G T C G T A A C T G A C T G A G T C C G T A A G T C C G T A A G T C C G T A C G T A C G T A C G T A A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PB0130.1_Gm397_2/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AGGCACACAAAA--
AGCGGCACACACGCAA
A C G T A C G T C G T A A C T G A C T G A G T C C G T A A G T C C G T A A G T C C G T A C G T A C G T A C G T A A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

NKX2-5/MA0063.2/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AGGCACACAAAA
-ACCACTCAAAA
C G T A A C T G A C T G A G T C C G T A A G T C C G T A A G T C C G T A C G T A C G T A C G T A
A C G T T C G A T G A C G A T C C T G A G A T C G C A T G A T C C G T A G C T A T C G A G C T A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AGGCACACAAAA
CCAGGAACAG----
A C G T A C G T C G T A A C T G A C T G A G T C C G T A A G T C C G T A A G T C C G T A C G T A C G T A C G T A
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AGGCACACAAAA----
-CTCACACAATGGCGC
C G T A A C T G A C T G A G T C C G T A A G T C C G T A A G T C C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer

Match Rank:6
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AGGCACACAAAA--
--BMRVACAAWGGV
C G T A A C T G A C T G A G T C C G T A A G T C C G T A A G T C C G T A C G T A C G T A C G T A A C G T A C G T
A C G T A C G T A T G C T G A C C T G A T A C G C G T A A G T C C G T A C G T A C G T A C T A G T C A G T G C A

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGGCACACAAAA
AGCCACTCAAG-
C G T A A C T G A C T G A G T C C G T A A G T C C G T A A G T C C G T A C G T A C G T A C G T A
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGGCACACAAAA
TBGCACGCAA--
C G T A A C T G A C T G A G T C C G T A A G T C C G T A A G T C C G T A C G T A C G T A C G T A
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGGCACACAAAA----
AAACAGACAAAGGAAT
C G T A A C T G A C T G A G T C C G T A A G T C C G T A A G T C C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGGCACACAAAA-
ATTTGCATACAATGG
A C G T A C G T C G T A A C T G A C T G A G T C C G T A A G T C C G T A A G T C C G T A C G T A C G T A C G T A A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G