Information for 12-TTTCTTGGTCAC (Motif 15)

A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C T G A C G T A G T C C G T A A G T C
Reverse Opposite:
A C T G A C G T A C T G C G T A A G T C A G T C C G T A C G T A A C T G C G T A C G T A C G T A
p-value:1e-4
log p-value:-9.476e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.0 +/- 0.0bp
Average Position of motif in Background76.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA/MA0071.1/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TTTCTTGGTCAC
-ATCAAGGTCA-
A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C T G A C G T A G T C C G T A A G T C
A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T

HOXA13/MA0650.2/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TTTCTTGGTCAC
GTTTTATTGGN---
A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C T G A C G T A G T C C G T A A G T C
C A T G C A G T A C G T A G C T A G C T C G T A A C G T A C G T C T A G A T C G A C T G A C G T A C G T A C G T

Stat5a/MA1624.1/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TTTCTTGGTCAC
NNTTCTTGGAAN-
A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C T G A C G T A G T C C G T A A G T C
C T G A C G A T G A C T G C A T T G A C G A C T C G A T C T A G C A T G G C T A C T G A G C T A A C G T

PB0158.1_Rfx3_2/Jaspar

Match Rank:4
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----TTTCTTGGTCAC-------
ACTGACCCTTGGTTACCACAAAG
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C T G A C G T A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G T C A C G T A T C G G C T A A T G C T A C G A T G C G C A T C G A T T C A G A C T G C G A T C A G T C G T A G A T C T G A C T C G A T G A C T C G A T C G A C G T A A T C G

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TTTCTTGGTCAC---
AAWCTAGGTCARDNN
A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C T G A C G T A G T C C G T A A G T C A C G T A C G T A C G T
C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A

PB0159.1_Rfx4_2/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TTTCTTGGTCAC---
TACCCTAGTTACCGA
A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C T G A C G T A G T C C G T A A G T C A C G T A C G T A C G T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

PB0133.1_Hic1_2/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TTTCTTGGTCAC----
NNNNTTGGGCACNNCN
A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C T G A C G T A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

HOXB13/MA0901.2/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TTTCTTGGTCAC
NNATTTTATTGGNN--
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C T G A C G T A G T C C G T A A G T C
C G T A C G T A C G T A C G A T C G A T C G A T G C A T T G C A G C A T C G A T C T A G C A T G G C A T G C A T A C G T A C G T

ESRRA/MA0592.3/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TTTCTTGGTCAC-
GCTCAAGGTCACA
A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C T G A C G T A G T C C G T A A G T C A C G T
C A T G A G T C G A C T T A G C C T G A T C G A C A T G C A T G C G A T A G T C C T G A G A T C T C G A

PAX5/MA0014.3/Jaspar

Match Rank:10
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:TTTCTTGGTCAC----
----NNGGTCACGCTC
A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C T G A C G T A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C A G C A T G T C A G A T C G G A C T A T G C C G T A A G T C T C A G A T G C G A C T A G T C