Information for 2-AGGGAATATCAG (Motif 4)

C G T A A C T G A C T G A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G C G T A A C G T C G T A A C G T A C G T A G T C A G T C A G T C A C G T
p-value:1e-4
log p-value:-9.606e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets6.0 +/- 0.0bp
Average Position of motif in Background64.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AGGGAATATCAG
-GGGAATTTCC-
C G T A A C T G A C T G A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A A C T G
A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T

PH0137.1_Pitx1/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----AGGGAATATCAG-
TTAGAGGGATTAACAAT
A C G T A C G T A C G T A C G T C G T A A C T G A C T G A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A A C T G A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

RELB/MA1117.1/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AGGGAATATCAG
NNGGGGAATNC---
A C G T A C G T C G T A A C T G A C T G A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A A C T G
A T G C G T A C A T C G C A T G C A T G C T A G C T G A G C T A G C A T G A C T G A T C A C G T A C G T A C G T

DPRX/MA1480.1/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AGGGAATATCAG
-NGGATTATCT-
C G T A A C T G A C T G A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A A C T G
A C G T T A C G T C A G C A T G G T C A A C G T A C G T C G T A C A G T A T G C A G C T A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AGGGAATATCAG--
AGGGGGATTAGCTGCC
A C G T A C G T C G T A A C T G A C T G A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A A C T G A C G T A C G T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C

PITX2/MA1547.1/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGGGAATATCAG
-GGGATTAN---
C G T A A C T G A C T G A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A A C T G
A C G T A C T G T C A G C T A G G T C A A C G T A G C T C G T A C A G T A C G T A C G T A C G T

GFY(?)/Promoter/Homer

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGGGAATATCAG-
-GGGAATTGTAGT
C G T A A C T G A C T G A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A A C T G A C G T
A C G T C A T G T C A G T C A G T C G A T C G A G C A T A C G T A C T G A C G T C T G A A T C G A C G T

PH0162.1_Six2/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGGGAATATCAG----
AATGGGGTATCACGTTT
A C G T C G T A A C T G A C T G A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A A C T G A C G T A C G T A C G T A C G T
C T G A G C T A C A G T T C A G C T A G A C T G C T A G A C G T C T G A A C G T G A T C C T G A G A T C C A G T G C A T G A C T C A G T

PH0161.1_Six1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGGGAATATCAG----
GATGGGGTATCATTTTT
A C G T C G T A A C T G A C T G A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A A C T G A C G T A C G T A C G T A C G T
C T A G G C T A C A G T T C A G C T A G A T C G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C A G T G C A T A C G T C A G T

RELA/MA0107.1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGGGAATATCAG
-GGGAATTTCC-
C G T A A C T G A C T G A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A A C T G
A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T