Information for 24-TTAGCCAATGAA (Motif 28)

A C G T A C G T C G T A A C T G A G T C A G T C C G T A C G T A A C G T A C T G C G T A C G T A
Reverse Opposite:
A C G T A C G T A G T C C G T A A C G T A C G T A C T G A C T G A G T C A C G T C G T A C G T A
p-value:1e-3
log p-value:-8.951e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets124.0 +/- 0.0bp
Average Position of motif in Background172.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-TTAGCCAATGAA
ACTAGCCAATCA-
A C G T A C G T A C G T C G T A A C T G A G T C A G T C C G T A C G T A A C G T A C T G C G T A C G T A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

NFYB/MA0502.2/Jaspar

Match Rank:2
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:TTAGCCAATGAA
NTGGCCAATGAG
A C G T A C G T C G T A A C T G A G T C A G T C C G T A C G T A A C G T A C T G C G T A C G T A
A G T C A C G T C T A G T C A G G A T C G T A C G T C A T C G A C G A T T A C G T C G A T A C G

NFY(CCAAT)/Promoter/Homer

Match Rank:3
Score:0.70
Offset:2
Orientation:forward strand
Alignment:TTAGCCAATGAA
--AGCCAATCGG
A C G T A C G T C G T A A C T G A G T C A G T C C G T A C G T A A C G T A C T G C G T A C G T A
A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.69
Offset:3
Orientation:forward strand
Alignment:TTAGCCAATGAA-
---GGCMATGAAA
A C G T A C G T C G T A A C T G A G T C A G T C C G T A C G T A A C G T A C T G C G T A C G T A A C G T
A C G T A C G T A C G T C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.68
Offset:3
Orientation:forward strand
Alignment:TTAGCCAATGAA-
---RGCAATNAAA
A C G T A C G T C G T A A C T G A G T C A G T C C G T A C G T A A C G T A C T G C G T A C G T A A C G T
A C G T A C G T A C G T C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A

Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.68
Offset:3
Orientation:forward strand
Alignment:TTAGCCAATGAA-
---GGYAATGAAA
A C G T A C G T C G T A A C T G A G T C A G T C C G T A C G T A A C G T A C T G C G T A C G T A A C G T
A C G T A C G T A C G T C T A G T A C G G A C T T G C A T G C A C G A T T A C G C T G A T C G A C T G A

NFYC/MA1644.1/Jaspar

Match Rank:7
Score:0.66
Offset:2
Orientation:forward strand
Alignment:TTAGCCAATGAA-
--AGCCAATCAGA
A C G T A C G T C G T A A C T G A G T C A G T C C G T A C G T A A C G T A C T G C G T A C G T A A C G T
A C G T A C G T T C G A C T A G A G T C G T A C G C T A T C G A G A C T T A G C T C G A T A C G T G C A

NFYA/MA0060.3/Jaspar

Match Rank:8
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TTAGCCAATGAA-
--AACCAATCAGA
A C G T A C G T C G T A A C T G A G T C A G T C C G T A C G T A A C G T A C T G C G T A C G T A A C G T
A C G T A C G T T C G A C T G A A G T C G A T C G C T A T C G A G A C T T A G C T C G A T A C G T G C A

HOXA13/MA0650.2/Jaspar

Match Rank:9
Score:0.63
Offset:3
Orientation:forward strand
Alignment:TTAGCCAATGAA--
---CCCAATAAAAC
A C G T A C G T C G T A A C T G A G T C A G T C C G T A C G T A A C G T A C T G C G T A C G T A A C G T A C G T
A C G T A C G T A C G T T G A C T A G C A G T C G T C A C G T A A C G T C T G A C T G A C G T A G T C A G T A C

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TTAGCCAATGAA--
--HDGYAATGAAAN
A C G T A C G T C G T A A C T G A G T C A G T C C G T A C G T A A C G T A C T G C G T A C G T A A C G T A C G T
A C G T A C G T G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A