Information for 9-GTCCATCTTAGG (Motif 8)

A C T G A C G T A G T C A G T C C G T A A C G T A G T C A C G T A C G T C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T C G T A C G T A A C T G C G T A A C G T A C T G A C T G C G T A A G T C
p-value:1e-5
log p-value:-1.162e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets191.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GTCCATCTTAGG
TNCCATATATGG
A C T G A C G T A G T C A G T C C G T A A C G T A G T C A C G T A C G T C G T A A C T G A C T G
C A G T A C T G G A T C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G A T C G

YY1/MA0095.2/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GTCCATCTTAGG
GCNGCCATCTTG--
A C G T A C G T A C T G A C G T A G T C A G T C C G T A A C G T A G T C A C G T A C G T C G T A A C T G A C T G
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T

PB0078.1_Srf_1/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GTCCATCTTAGG--
TTCCATATATGGAA
A C T G A C G T A G T C A G T C C G T A A C G T A G T C A C G T A C G T C G T A A C T G A C T G A C G T A C G T
G C A T C G A T G T A C A G T C C G T A C G A T C G T A G C A T C G T A G C A T C T A G C A T G G C A T G T C A

MF0008.1_MADS_class/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GTCCATCTTAGG
--CCATATATGG
A C T G A C G T A G T C A G T C C G T A A C G T A G T C A C G T A C G T C G T A A C T G A C T G
A C G T A C G T G A T C A G T C G C T A C G A T C G T A C G A T C G T A G C A T C T A G C A T G

SRF/MA0083.3/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GTCCATCTTAGG---
TGACCATATATGGTCA
A C G T A C T G A C G T A G T C A G T C C G T A A C G T A G T C A C G T A C G T C G T A A C T G A C T G A C G T A C G T A C G T
G C A T A C T G G T C A A T G C A G T C C G T A C G A T C T G A A C G T C G T A G C A T T A C G C T A G C A G T T G A C C G T A

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GTCCATCTTAGG---
GGTCANYTGAGGWCA
A C T G A C G T A G T C A G T C C G T A A C G T A G T C A C G T A C G T C G T A A C T G A C T G A C G T A C G T A C G T
C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:7
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GTCCATCTTAGG
GYCATCMATCAT---
A C G T A C G T A C G T A C T G A C G T A G T C A G T C C G T A A C G T A G T C A C G T A C G T C G T A A C T G A C T G
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T A C G T

NEUROG2(var.2)/MA1642.1/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GTCCATCTTAGG-
NNCCATCTGTNNN
A C T G A C G T A G T C A G T C C G T A A C G T A G T C A C G T A C G T C G T A A C T G A C T G A C G T
A C G T T C A G T G A C G T A C C T G A A C G T T G A C A G C T A T C G A C G T A G C T G A T C G A T C

THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GTCCATCTTAGG---
GGTCACCTGAGGTCA
A C T G A C G T A G T C A G T C C G T A A C G T A G T C A C G T A C G T C G T A A C T G A C T G A C G T A C G T A C G T
C A T G A C T G A G C T A T G C C G T A A T G C G T A C G A C T T A C G C T G A A C T G A C T G G C A T A T G C C T G A

YY1(Zf)/Promoter/Homer

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GTCCATCTTAGG
GCCGCCATCTTG--
A C G T A C G T A C T G A C G T A G T C A G T C C G T A A C G T A G T C A C G T A C G T C G T A A C T G A C T G
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T