Information for 6-ARAACCCTAAAA (Motif 12)

C G T A C T A G C T G A T G C A G T A C G T A C G T A C C G A T C G T A G T C A C T G A C T G A
Reverse Opposite:
A G C T A G C T A C G T C G A T C G T A A C T G A C T G C A T G A C G T A G C T G A T C A C G T
p-value:1e-7
log p-value:-1.656e+01
Information Content per bp:1.783
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.32%
Number of Background Sequences with motif60.6
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets103.9 +/- 52.1bp
Average Position of motif in Background97.6 +/- 58.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.60
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0064.1_Hoxb9/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:ARAACCCTAAAA----
AGAGCCATAAAATTCG
C G T A C T A G C T G A T G C A G T A C G T A C G T A C C G A T C G T A G T C A C T G A C T G A A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:2
Score:0.61
Offset:2
Orientation:forward strand
Alignment:ARAACCCTAAAA
--VGCCATAAAA
C G T A C T A G C T G A T G C A G T A C G T A C G T A C C G A T C G T A G T C A C T G A C T G A
A C G T A C G T T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A

HOXD12/MA0873.1/Jaspar

Match Rank:3
Score:0.58
Offset:2
Orientation:forward strand
Alignment:ARAACCCTAAAA-
--AGTCGTAAAAA
C G T A C T A G C T G A T G C A G T A C G T A C G T A C C G A T C G T A G T C A C T G A C T G A A C G T
A C G T A C G T T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:ARAACCCTAAAA
--KGCCATAAAA
C G T A C T A G C T G A T G C A G T A C G T A C G T A C C G A T C G T A G T C A C T G A C T G A
A C G T A C G T C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:ARAACCCTAAAA--
--NGYCATAAAWCH
C G T A C T A G C T G A T G C A G T A C G T A C G T A C C G A T C G T A G T C A C T G A C T G A A C G T A C G T
A C G T A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

RUNX3/MA0684.2/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:ARAACCCTAAAA-
-AAAACCTCAAAT
C G T A C T A G C T G A T G C A G T A C G T A C G T A C C G A T C G T A G T C A C T G A C T G A A C G T
A C G T C G T A G C T A T C G A C T G A G A T C T G A C C G A T T G A C G C T A C T G A G C T A G A C T

PH0056.1_Hoxa9/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:ARAACCCTAAAA-----
ACGGCCATAAAATTAAT
C G T A C T A G C T G A T G C A G T A C G T A C G T A C C G A T C G T A G T C A C T G A C T G A A C G T A C G T A C G T A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

PH0047.1_Hoxa11/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-ARAACCCTAAAA---
TAAAGTCGTAAAACAT
A C G T C G T A C T A G C T G A T G C A G T A C G T A C G T A C C G A T C G T A G T C A C T G A C T G A A C G T A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:9
Score:0.56
Offset:3
Orientation:forward strand
Alignment:ARAACCCTAAAA-
---GTCATAAAAN
C G T A C T A G C T G A T G C A G T A C G T A C G T A C C G A T C G T A G T C A C T G A C T G A A C G T
A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

PH0075.1_Hoxd10/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:ARAACCCTAAAA-----
AATGCAATAAAATTTAT
C G T A C T A G C T G A T G C A G T A C G T A C G T A C C G A T C G T A G T C A C T G A C T G A A C G T A C G T A C G T A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T