Information for 1-CAAAATCATCAT (Motif 1)

A G T C G T C A C G T A C T G A C G T A C G A T G A T C C G T A A G C T A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G C T G A A C G T C A T G C G T A C G A T A G C T A C G T A C G T A C T G
p-value:1e-15
log p-value:-3.479e+01
Information Content per bp:1.880
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.33%
Number of Background Sequences with motif9.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets122.4 +/- 45.5bp
Average Position of motif in Background98.9 +/- 53.0bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0037.1_Hdx/Jaspar

Match Rank:1
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CAAAATCATCAT-
AAGGCGAAATCATCGCA
A C G T A C G T A C G T A C G T A G T C G T C A C G T A C T G A C G T A C G A T G A T C C G T A A G C T A G T C C G T A A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CAAAATCATCAT-
TGCCAAAATAAACANN
A C G T A C G T A C G T A G T C G T C A C G T A C T G A C G T A C G A T G A T C C G T A A G C T A G T C C G T A A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CAAAATCATCAT
GCTAARTAAACA-
A C G T A G T C G T C A C G T A C T G A C G T A C G A T G A T C C G T A A G C T A G T C C G T A A C G T
A T C G G A T C G C A T T C G A G C T A T C G A G C A T G T C A C G T A G T C A G A T C G C T A A C G T

BARX2/MA1471.1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CAAAATCATCAT
AAAAACCATTAC
A G T C G T C A C G T A C T G A C G T A C G A T G A T C C G T A A G C T A G T C C G T A A C G T
C T G A C G T A G C T A C G T A T G C A G A T C T G A C T C G A C A G T G A C T C G T A T A G C

PB0069.1_Sox21_1/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CAAAATCATCAT----
NNTAATTATAATNANN
A G T C G T C A C G T A C T G A C G T A C G A T G A T C C G T A A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
G T A C G C A T G C A T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C G T A

POU3F3/MA0788.1/Jaspar

Match Rank:6
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CAAAATCATCAT---
--AAATTAGCATAAT
A G T C G T C A C G T A C T G A C G T A C G A T G A T C C G T A A G C T A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G C T A G C T A C G T A G A C T G C A T C G T A T C A G G T A C T G C A G C A T G C T A G C T A G C A T

PB0079.1_Sry_1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CAAAATCATCAT----
TATAATTATAATATTC
A G T C G T C A C G T A C T G A C G T A C G A T G A T C C G T A A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G C T A C A G T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C T G A C G A T C A G T T G A C

DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CAAAATCATCAT-
NWTAAYCYAATCAWN
A C G T A C G T A G T C G T C A C G T A C T G A C G T A C G A T G A T C C G T A A G C T A G T C C G T A A C G T A C G T
C A T G G C A T C G A T C G T A C G T A G A T C A G T C A G C T C G T A C G T A A C G T A G T C C G T A C G T A G C A T

PH0017.1_Cux1_2/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CAAAATCATCAT-----
--TAGTGATCATCATTA
A G T C G T C A C G T A C T G A C G T A C G A T G A T C C G T A A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T G C T A C A T G A G C T C A T G G C T A C G A T G A T C C G T A C A G T G A T C T C G A A G C T A C G T G C T A

DUXA/MA0884.1/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CAAAATCATCAT
CTAATTTAATCAA
A C G T A G T C G T C A C G T A C T G A C G T A C G A T G A T C C G T A A G C T A G T C C G T A A C G T
G A T C G A C T C T G A T C G A G A C T A G C T A G C T T G C A C T G A A C G T A G T C C G T A C T G A