Information for 1-CCTAACCCGA (Motif 4)

A G T C A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C T G C G T A
Reverse Opposite:
A C G T A G T C A C T G A C T G A C T G A C G T A C G T C G T A A C T G A C T G
p-value:1e-4
log p-value:-9.590e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets62.0 +/- 0.0bp
Average Position of motif in Background11.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCTAACCCGA
GCTAATCC--
A G T C A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C T G C G T A
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T

SIX1/MA1118.1/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CCTAACCCGA--
-GTAACCTGATA
A G T C A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C T G C G T A A C G T A C G T
A C G T C A T G C G A T G C T A C G T A G A T C G T A C G C A T C T A G C G T A A C G T G T C A

PB0153.1_Nr2f2_2/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CCTAACCCGA----
NNNNTGACCCGGCGCG
A C G T A C G T A G T C A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C T G C G T A A C G T A C G T A C G T A C G T
C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G

Dmbx1/MA0883.1/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CCTAACCCGA----
NNNATTAATCCGNTTNA
A C G T A C G T A C G T A G T C A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C T G C G T A A C G T A C G T A C G T A C G T
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A

PH0025.1_Dmbx1/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CCTAACCCGA----
NNNATTAATCCGNTTNA
A C G T A C G T A C G T A G T C A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C T G C G T A A C G T A C G T A C G T A C G T
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A

PB0157.1_Rara_2/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CCTAACCCGA----
NNCNTGACCCCGCTCT
A C G T A C G T A G T C A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C T G C G T A A C G T A C G T A C G T A C G T
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

GSC2/MA0891.1/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCTAACCCGA
CCTAATCCGC
A G T C A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C T G C G T A
T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C

OTX1/MA0711.1/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CCTAACCCGA
-TTAATCCG-
A G T C A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C T G C G T A
A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G A C G T

PITX1/MA0682.2/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CCTAACCCGA
-CTAATCCC-
A G T C A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C T G C G T A
A C G T G A T C A C G T C G T A C G T A A C G T G T A C A G T C G T A C A C G T

IRF5/MA1420.1/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCTAACCCGA----
CCGAAACCGAAACT
A G T C A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C T G C G T A A C G T A C G T A C G T A C G T
G A T C A G T C C A T G C G T A G C T A C T G A G A T C A G T C T C A G T G C A C G T A G T C A T G A C A G C T