Information for 11-GTTCACAAGTTT (Motif 17)

A C T G A C G T A C G T A G T C C G T A A G T C C G T A C G T A A C T G A C G T A C G T A C G T
Reverse Opposite:
C G T A C G T A C G T A A G T C A C G T A C G T A C T G A C G T A C T G C G T A C G T A A G T C
p-value:1e-3
log p-value:-8.900e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif9.09%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets110.0 +/- 0.0bp
Average Position of motif in Background161.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TBX21/MA0690.1/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GTTCACAAGTTT
-TTCACACCTT-
A C T G A C G T A C G T A G T C C G T A A G T C C G T A C G T A A C T G A C G T A C G T A C G T
A C G T C G A T A G C T T G A C C T G A G T A C T C G A T G A C G A T C G A C T G A C T A C G T

PH0040.1_Hmbox1/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GTTCACAAGTTT--
GANGTTAACTAGTTTNN
A C G T A C G T A C G T A C T G A C G T A C G T A G T C C G T A A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GTTCACAAGTTT
-TTMACACCTT-
A C T G A C G T A C G T A G T C C G T A A G T C C G T A C G T A A C T G A C G T A C G T A C G T
A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T A C G T

EOMES/MA0800.1/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GTTCACAAGTTT
NTTTTCACACCTT-
A C G T A C G T A C T G A C G T A C G T A G T C C G T A A G T C C G T A C G T A A C T G A C G T A C G T A C G T
C T G A G C A T C A G T C G A T A G C T T G A C C T G A A G T C T C G A T G A C G A T C G A C T G A C T A C G T

PB0136.1_IRC900814_2/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GTTCACAAGTTT----
TTTTACGACTTTCCAT
A C T G A C G T A C G T A G T C C G T A A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T A G C T G C A T A G C T T C G A G A T C C T A G C T G A G T A C C A G T A G C T G A C T G A T C T G A C T C G A G A C T

TBX20/MA0689.1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GTTCACAAGTTT
CTTCACACCTA-
A C T G A C G T A C G T A G T C C G T A A G T C C G T A C G T A A C T G A C G T A C G T A C G T
A G T C G C A T G C A T G T A C G T C A T G A C G T C A G T A C A G T C G A C T G C T A A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:7
Score:0.58
Offset:5
Orientation:forward strand
Alignment:GTTCACAAGTTT
-----CAAGCTT
A C T G A C G T A C G T A G T C C G T A A G T C C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T

TBR1/MA0802.1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GTTCACAAGTTT
TTTCACACCT--
A C T G A C G T A C G T A G T C C G T A A G T C C G T A C G T A A C T G A C G T A C G T A C G T
C G A T C G A T G A C T T G A C C T G A T A G C T C G A T A G C G A T C G A C T A C G T A C G T

VDR/MA0693.2/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GTTCACAAGTTT
TGAGTTCA-------
A C G T A C G T A C G T A C T G A C G T A C G T A G T C C G T A A G T C C G T A C G T A A C T G A C G T A C G T A C G T
G A C T T C A G C T G A A C T G A C G T C A G T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0013.1_Eomes_1/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GTTCACAAGTTT--
NNTTTTCACACCTTNNN
A C G T A C G T A C G T A C T G A C G T A C G T A G T C C G T A A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
C T G A C T G A C G A T C A G T C A G T A G C T T G A C C T G A A G T C C T G A T A G C G A T C G A C T G A C T C G A T A G C T T G A C