Information for 8-TGATAGATGGCA (Motif 16)

A C G T A C T G C G T A A G C T C G T A A C T G C G T A A C G T A C T G A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C A G T C C G T A A C G T A G T C A C G T C T G A A C G T A G T C C G T A
p-value:1e-6
log p-value:-1.426e+01
Information Content per bp:1.974
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.40%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets117.4 +/- 40.5bp
Average Position of motif in Background101.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)3.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:1
Score:0.76
Offset:0
Orientation:forward strand
Alignment:TGATAGATGGCA
TGATKGATGR--
A C G T A C T G C G T A A G C T C G T A A C T G C G T A A C G T A C T G A C T G A G T C C G T A
C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:2
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-TGATAGATGGCA
ATGATKGATGRC-
A C G T A C G T A C T G C G T A A G C T C G T A A C T G C G T A A C G T A C T G A C T G A G T C C G T A
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:3
Score:0.75
Offset:0
Orientation:forward strand
Alignment:TGATAGATGGCA
TGATTRATGGCY
A C G T A C T G C G T A A G C T C G T A A C T G C G T A A C G T A C T G A C T G A G T C C G T A
C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:4
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:TGATAGATGGCA
TGATTGATGA--
A C G T A C T G C G T A A G C T C G T A A C T G C G T A A C G T A C T G A C T G A G T C C G T A
C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T A C G T

NEUROD1/MA1109.1/Jaspar

Match Rank:5
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TGATAGATGGCA-
GGACAGATGGCAG
A C G T A C T G C G T A A G C T C G T A A C T G C G T A A C G T A C T G A C T G A G T C C G T A A C G T
C A T G T C A G T C G A T G A C C G T A A C T G T G C A G C A T C A T G A C T G A G T C T C G A T A C G

TGIF2/MA0797.1/Jaspar

Match Rank:6
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TGATAGATGGCA
TGACAGCTGTCA
A C G T A C T G C G T A A G C T C G T A A C T G C G T A A C G T A C T G A C T G A G T C C G T A
G C A T C T A G C T G A G A T C C T G A C A T G T A G C G A C T C T A G G A C T A T G C C G T A

PKNOX2/MA0783.1/Jaspar

Match Rank:7
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TGATAGATGGCA
TGACAGGTGTCA
A C G T A C T G C G T A A G C T C G T A A C T G C G T A A C G T A C T G A C T G A G T C C G T A
C G A T T A C G C T G A A G T C C G T A C A T G T A C G A G C T T C A G G A C T T G A C C T G A

MEIS1(var.2)/MA1639.1/Jaspar

Match Rank:8
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--TGATAGATGGCA
NNTGATTGATGNN-
A C G T A C G T A C G T A C T G C G T A A G C T C G T A A C T G C G T A A C G T A C T G A C T G A G T C C G T A
C G T A C G T A C G A T C A T G C G T A C G A T C A G T C A T G G T C A G A C T C T A G C T G A G A T C A C G T

TGIF1/MA0796.1/Jaspar

Match Rank:9
Score:0.70
Offset:0
Orientation:forward strand
Alignment:TGATAGATGGCA
TGACAGCTGTCA
A C G T A C T G C G T A A G C T C G T A A C T G C G T A A C G T A C T G A C T G A G T C C G T A
G C A T T C A G T C G A A G T C T C G A A C T G T A G C A G C T T A C G G C A T G T A C C G T A

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:10
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TGATAGATGGCA
RTGATTKATRGN-
A C G T A C G T A C T G C G T A A G C T C G T A A C T G C G T A A C G T A C T G A C T G A G T C C G T A
C T G A C G A T C T A G C G T A A G C T C G A T C A G T C T G A G A C T C T A G C T A G A T G C A C G T