| p-value: | 1e-4 |
| log p-value: | -9.307e+00 |
| Information Content per bp: | 1.530 |
| Number of Target Sequences with motif | 1.0 |
| Percentage of Target Sequences with motif | 11.11% |
| Number of Background Sequences with motif | 0.0 |
| Percentage of Background Sequences with motif | 0.00% |
| Average Position of motif in Targets | 171.0 +/- 0.0bp |
| Average Position of motif in Background | 0.0 +/- 0.0bp |
| Strand Bias (log2 ratio + to - strand density) | 10.0 |
| Multiplicity (# of sites on avg that occur together) | 1.00 |
| Motif File: | file (matrix) reverse opposite |
| SVG Files for Logos: | forward logo reverse opposite |
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer
| Match Rank: | 1 |
| Score: | 0.63 |
| Offset: | 0 |
| Orientation: | forward strand |
| Alignment: | CATGCTCATCAA TATGCWAATBAV |
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PH0151.1_Pou6f1_1/Jaspar
| Match Rank: | 2 |
| Score: | 0.63 |
| Offset: | -1 |
| Orientation: | reverse strand |
| Alignment: | -CATGCTCATCAA---- NNNACCTCATTATCNTN |
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|
|
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer
| Match Rank: | 3 |
| Score: | 0.62 |
| Offset: | 0 |
| Orientation: | forward strand |
| Alignment: | CATGCTCATCAA WATGCAAATGAG |
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|
|
PH0068.1_Hoxc13/Jaspar
| Match Rank: | 4 |
| Score: | 0.62 |
| Offset: | 0 |
| Orientation: | forward strand |
| Alignment: | CATGCTCATCAA---- AAAGCTCGTAAAATTT |
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|
|
POU6F2/MA0793.1/Jaspar
| Match Rank: | 5 |
| Score: | 0.61 |
| Offset: | 2 |
| Orientation: | forward strand |
| Alignment: | CATGCTCATCAA --AGCTCATTAT |
|
|
|
PH0134.1_Pbx1/Jaspar
| Match Rank: | 6 |
| Score: | 0.60 |
| Offset: | 1 |
| Orientation: | forward strand |
| Alignment: | CATGCTCATCAA------ -TCACCCATCAATAAACA |
|
|
|
POU6F1(var.2)/MA1549.1/Jaspar
| Match Rank: | 7 |
| Score: | 0.60 |
| Offset: | 2 |
| Orientation: | reverse strand |
| Alignment: | CATGCTCATCAA --NNCTCATTAT |
|
|
|
PH0152.1_Pou6f1_2/Jaspar
| Match Rank: | 8 |
| Score: | 0.58 |
| Offset: | -1 |
| Orientation: | reverse strand |
| Alignment: | -CATGCTCATCAA---- GCAACCTCATTATNNNN |
|
|
|
PH0016.1_Cux1_1/Jaspar
| Match Rank: | 9 |
| Score: | 0.58 |
| Offset: | 0 |
| Orientation: | reverse strand |
| Alignment: | CATGCTCATCAA----- TNAGNTGATCAACCGGT |
|
|
|
HOXC13/MA0907.1/Jaspar
| Match Rank: | 10 |
| Score: | 0.58 |
| Offset: | 3 |
| Orientation: | forward strand |
| Alignment: | CATGCTCATCAA-- ---GCTCGTAAAAA |
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