Information for 1-GGCTAGGT (Motif 9)

A C T G A C T G A G T C A C G T C G T A A C T G A C T G C G A T
Reverse Opposite:
C G T A A G T C A G T C A C G T C G T A A C T G A G T C G T A C
p-value:1e-6
log p-value:-1.504e+01
Information Content per bp:1.924
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif45.45%
Number of Background Sequences with motif1284.1
Percentage of Background Sequences with motif1.47%
Average Position of motif in Targets72.0 +/- 59.2bp
Average Position of motif in Background99.6 +/- 91.2bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGCTAGGT
NGCTN---
A C T G A C T G A G T C A C G T C G T A A C T G A C T G C G A T
T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----GGCTAGGT--
NNCGTTGCTATGGNN
A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C A C G T C G T A A C T G A C T G C G A T A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:3
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GGCTAGGT----
KGTTGCTAGGMAACA
A C G T A C G T A C G T A C T G A C T G A G T C A C G T C G T A A C T G A C T G C G A T A C G T A C G T A C G T A C G T
C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----GGCTAGGT--
NCCGTTGCTANGNGN
A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C A C G T C G T A A C T G A C T G C G A T A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

PB0054.1_Rfx3_1/Jaspar

Match Rank:5
Score:0.59
Offset:-9
Orientation:reverse strand
Alignment:---------GGCTAGGT------
NTNNNNNGTTGCTANGGNNCANA
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C A C G T C G T A A C T G A C T G C G A T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

Smad4/MA1153.1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GGCTAGGT
TGTCTAGA-
A C G T A C T G A C T G A G T C A C G T C G T A A C T G A C T G C G A T
G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GGCTAGGT
TWGTCTGV--
A C G T A C G T A C T G A C T G A G T C A C G T C G T A A C T G A C T G C G A T
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T

KLF3/MA1516.1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GGCTAGGT-
NGGGCGTGGTC
A C G T A C G T A C T G A C T G A G T C A C G T C G T A A C T G A C T G C G A T A C G T
C G A T C T A G A C T G A C T G G A T C C A T G A G C T C T A G A T C G A G C T G A T C

POL006.1_BREu/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GGCTAGGT
GGCGCGCT
A C T G A C T G A G T C A C G T C G T A A C T G A C T G C G A T
C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T

PB0181.1_Spdef_2/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GGCTAGGT-------
CTACTAGGATGTNNTN
A C G T A C T G A C T G A G T C A C G T C G T A A C T G A C T G C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G T C G C A T C G T A T G A C C G A T T C G A T A C G C A T G C G T A G A C T C T A G G A C T C G A T T C G A G C A T G A T C