Information for 23-CCCTAAAATTCG (Motif 21)

A G T C A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C G T A C G T A G T C A C T G
Reverse Opposite:
A G T C A C T G C G T A C G T A A C G T A C G T A C G T A C G T C G T A A C T G A C T G A C T G
p-value:1e-4
log p-value:-1.063e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets67.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0064.1_Hoxb9/Jaspar

Match Rank:1
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CCCTAAAATTCG
AGAGCCATAAAATTCG
A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C G T A C G T A G T C A C T G
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCCTAAAATTCG
VGCCATAAAA----
A C G T A C G T A G T C A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C G T A C G T A G T C A C T G
T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A A C G T A C G T A C G T A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:3
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CCCTAAAATTCG-
ACGGCCATAAAATTAAT
A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C G T A C G T A G T C A C T G A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCCTAAAATTCG
KGCCATAAAA----
A C G T A C G T A G T C A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C G T A C G T A G T C A C T G
C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CCCTAAAATTCG
CTACCAATAAAATTCT
A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C G T A C G T A G T C A C T G
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

PB0136.1_IRC900814_2/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCCTAAAATTCG-----
-ATGGAAAGTCGTAAAA
A G T C A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C G T A C G T A G T C A C T G A C G T A C G T A C G T A C G T A C G T
A C G T C T G A A G C T A C T G C T A G C T G A T C G A G T C A A C T G G A C T A G T C C A T G A C G T C T G A C G T A T C G A G C T A

MEF2D/MA0773.1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCCTAAAATTCG-
-ACTATAAATAGA
A G T C A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C G T A C G T A G T C A C T G A C G T
A C G T C T G A G A T C G A C T G T C A C G A T G C T A C G T A G C T A A C G T C T G A T C A G G T C A

PH0057.1_Hoxb13/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CCCTAAAATTCG
AACCCAATAAAATTCG
A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C G T A C G T A G T C A C T G
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

MEF2B/MA0660.1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CCCTAAAATTCG-
-GCTATAAATAGC
A G T C A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C G T A C G T A G T C A C T G A C G T
A C G T C T A G G T A C A G C T C G T A G C A T C G T A G C T A C G T A A C G T G C T A T C A G G T A C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CCCTAAAATTCG
NGYCATAAAWCH--
A C G T A C G T A G T C A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C G T A C G T A G T C A C T G
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T