Information for 21-TTATAAATTACT (Motif 28)

A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G A C G T C G T A C G T A A C G T A C G T A C G T C G T A A C G T C G T A C G T A
p-value:1e-3
log p-value:-8.363e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.0 +/- 0.0bp
Average Position of motif in Background90.7 +/- 40.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0119.1_Nkx6-1_2/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--TTATAAATTACT--
AGTAATTAATTACTTC
A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T C G T A A G T C A C G T A C G T A C G T
T C G A T C A G G A C T G C T A C G T A C G A T A G C T C G T A C G T A C G A T A C G T C T G A A G T C A C G T G A C T A G T C

PH0120.1_Nkx6-3/Jaspar

Match Rank:2
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--TTATAAATTACT---
GAAAATTAATTACTTTG
A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T
C T A G T G C A G C A T C G T A G C T A C G A T G A C T C G T A C G T A C G A T A C G T C T G A T G A C A G C T A C G T A G C T A C T G

PH0118.1_Nkx6-1_1/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TTATAAATTACT---
GAAAATTAATTACTTCG
A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T
C T A G T G C A G C T A C G T A C G T A C G A T A G C T C G T A C G T A C G A T A C G T C T G A G T A C G A C T A G C T A G T C A T C G

PH0038.1_Hlx/Jaspar

Match Rank:4
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---TTATAAATTACT
CCATAATTAATTACA
A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T C G T A A G T C A C G T
G T A C G T A C G T C A G A C T G C T A C G T A G A C T G C A T C T G A C T G A G C A T C G A T C T G A G A T C G T C A

PH0070.1_Hoxc5/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TTATAAATTACT---
NNTNATTAATTAATTCG
A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T
C G T A C T A G A C G T C G T A C T G A A G C T G A C T G T C A C G T A G C A T C A G T C T G A T C G A A G C T C A G T A T G C A T C G

PH0063.1_Hoxb8/Jaspar

Match Rank:6
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TTATAAATTACT---
TTTATTAATTGCNNGN
A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T
G C A T G A C T A C G T C T G A C G A T G C A T C G T A C G T A A C G T C A G T C T A G G A T C G T A C T C A G A T C G C G A T

PH0071.1_Hoxc6/Jaspar

Match Rank:7
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TTATAAATTACT---
NNTNATTAATTAATTTG
A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T
G C A T A C G T A G C T G C A T T G C A C A G T G A C T G C T A C G T A C G A T C G A T C T G A G T C A A G C T C G A T G A C T T C A G

PH0091.1_Lhx1/Jaspar

Match Rank:8
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TTATAAATTACT---
NNTTATTAATTAATNCN
A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T
T G A C C T G A C G A T C G A T C G T A G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G A C T G C A T A G T C A C T G

PH0172.1_Tlx2/Jaspar

Match Rank:9
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---TTATAAATTACT--
AANTTATTAATTAATTA
A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T C G T A A G T C A C G T A C G T A C G T
G C A T C G T A C T A G G A C T G C A T C G T A C G A T G A C T C G T A C G T A G C A T C G A T C T G A G C T A G A C T C G A T T G C A

PH0132.1_Pax6/Jaspar

Match Rank:10
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TTATAAATTACT----
TGATTAATTAATTGAC
A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A G C T C T A G T G C A G A C T G C A T T C G A G C T A C G A T A C G T C G T A C T G A A C G T A C G T T A C G C G T A G T A C