Information for 5-TBADAAATCTAV (Motif 5)

A G C T A T G C C G T A C A T G G T C A G T C A C G T A A C G T G T A C C G A T C T G A T G C A
Reverse Opposite:
A C G T A G C T C G T A C A T G T G C A A C G T C A G T C A G T G T A C A C G T T A C G C T G A
p-value:1e-4
log p-value:-1.013e+01
Information Content per bp:1.678
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif36.36%
Number of Background Sequences with motif1581.5
Percentage of Background Sequences with motif1.91%
Average Position of motif in Targets128.2 +/- 21.5bp
Average Position of motif in Background102.5 +/- 88.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1/MA0070.1/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TBADAAATCTAV
CCATCAATCAAA
A G C T A T G C C G T A C A T G G T C A G T C A C G T A A C G T G T A C C G A T C T G A T G C A
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TBADAAATCTAV-
NNCCATAAATCATNN
A C G T A C G T A G C T A T G C C G T A C A T G G T C A G T C A C G T A A C G T G T A C C G A T C T G A T G C A A C G T
C T G A T C A G G A T C G T A C T C G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G C A T G C A T G A C T

MEIS1(var.2)/MA1639.1/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TBADAAATCTAV
GTCATCAATCATT
A C G T A G C T A T G C C G T A C A T G G T C A G T C A C G T A A C G T G T A C C G A T C T G A T G C A
C T A G G A C T G A T C C T G A C A G T G T A C G T C A G C T A G C A T G T A C G C T A G C A T G C A T

PBX2/MA1113.2/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TBADAAATCTAV
GTCATAAATCATT
A C G T A G C T A T G C C G T A C A T G G T C A G T C A C G T A A C G T G T A C C G A T C T G A T G C A
T C A G G A C T G T A C C T G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G A C T G C A T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TBADAAATCTAV
GGCCATAAATCA--
A C G T A C G T A G C T A T G C C G T A C A T G G T C A G T C A C G T A A C G T G T A C C G A T C T G A T G C A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TBADAAATCTAV
YCATCMATCA--
A G C T A T G C C G T A C A T G G T C A G T C A C G T A A C G T G T A C C G A T C T G A T G C A
G A T C G T A C C T G A A C G T G A T C G T C A C T G A A C G T G A T C G C T A A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TBADAAATCTAV
GYCATCMATCAT-
A C G T A G C T A T G C C G T A C A T G G T C A G T C A C G T A A C G T G T A C C G A T C T G A T G C A
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T

PB0198.1_Zfp128_2/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TBADAAATCTAV-
NNTATANATATACN
A C G T A G C T A T G C C G T A C A T G G T C A G T C A C G T A A C G T G T A C C G A T C T G A T G C A A C G T
A T C G A C T G G C A T C T G A G C A T C T G A G C A T C T G A G A C T C G T A G A C T C G T A G T A C G T C A

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TBADAAATCTAV
TCATCAATCA--
A G C T A T G C C G T A C A T G G T C A G T C A C G T A A C G T G T A C C G A T C T G A T G C A
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TBADAAATCTAV-----
TCACCCATCAATAAACA
A G C T A T G C C G T A C A T G G T C A G T C A C G T A A C G T G T A C C G A T C T G A T G C A A C G T A C G T A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A