Information for 9-GCCATAGTATTT (Motif 10)

A C T G A G T C A G T C C G T A A C G T C G T A A C T G A C G T C G T A A C G T A C G T A C G T
Reverse Opposite:
C G T A C G T A C G T A A C G T C G T A A G T C A C G T C G T A A C G T A C T G A C T G A G T C
p-value:1e-5
log p-value:-1.158e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets36.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX2/MA0143.4/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCCATAGTATTT
NNCCATTGTNN--
A C G T A C T G A G T C A G T C C G T A A C G T C G T A A C T G A C G T C G T A A C G T A C G T A C G T
C G A T G C A T G A T C G A T C G C T A A G C T C G A T C T A G C G A T G C A T G C A T A C G T A C G T

SOX13/MA1120.1/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCCATAGTATTT
NNCCATTGTNN--
A C G T A C T G A G T C A G T C C G T A A C G T C G T A A C T G A C G T C G T A A C G T A C G T A C G T
C G A T A C T G A G T C G A T C C G T A G A C T C G A T T C A G G A C T A G C T G A C T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCCATAGTATTT
-CCATTGTTTT-
A C T G A G T C A G T C C G T A A C G T C G T A A C T G A C G T C G T A A C G T A C G T A C G T
A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCCATAGTATTT
-CCATTGTTYB-
A C T G A G T C A G T C C G T A A C G T C G T A A C T G A C G T C G T A A C G T A C G T A C G T
A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T

Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GCCATAGTATTT-
-CCATTGTTYYBB
A C T G A G T C A G T C C G T A A C G T C G T A A C T G A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A T G C G A T C C G T A A C G T A C G T A C T G A C G T A G C T A G C T A G T C A T C G A C T G

SOX9/MA0077.1/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GCCATAGTATTT
-CCATTGTTC--
A C T G A G T C A G T C C G T A A C G T C G T A A C T G A C G T C G T A A C G T A C G T A C G T
A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GCCATAGTATTT
NCCATTGTTY--
A C T G A G T C A G T C C G T A A C G T C G T A A C T G A C G T C G T A A C G T A C G T A C G T
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GCCATAGTATTT----
-CCATTGTATGCAAAT
A C T G A G T C A G T C C G T A A C G T C G T A A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

ZNF410/MA0752.1/Jaspar

Match Rank:9
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----GCCATAGTATTT
TCCATCCCATAATACTC
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C G T C G T A A C T G A C G T C G T A A C G T A C G T A C G T
A C G T T G A C G A T C G C T A C A G T G T A C G T A C A T G C G T C A A G C T G T C A T C G A G A C T C T G A G T A C A G C T G T A C

YY2/MA0748.2/Jaspar

Match Rank:10
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----GCCATAGTATTT
CGCCGCCATNN-----
A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C G T C G T A A C T G A C G T C G T A A C G T A C G T A C G T
A T G C C A T G A T G C T A G C C T A G A G T C A T G C T C G A A G C T A T G C C A G T A C G T A C G T A C G T A C G T A C G T