Information for 4-GGCTGTGAHAGT (Motif 4)

A C T G A C T G G T A C A C G T A C T G C G A T A T C G C G T A G A T C C G T A A C T G C G A T
Reverse Opposite:
C G T A G T A C C G A T C A T G A C G T T A G C C G T A G T A C C G T A A C T G G T A C A G T C
p-value:1e-4
log p-value:-9.987e+00
Information Content per bp:1.732
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif42.86%
Number of Background Sequences with motif1210.0
Percentage of Background Sequences with motif1.11%
Average Position of motif in Targets117.8 +/- 63.4bp
Average Position of motif in Background95.6 +/- 82.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0169.1_Tgif1/Jaspar

Match Rank:1
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GGCTGTGAHAGT-
NNNCAGCTGTCAATATN
A C G T A C G T A C G T A C G T A C T G A C T G G T A C A C G T A C T G C G A T A T C G C G T A G A T C C G T A A C T G C G A T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

MEIS2/MA0774.1/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GGCTGTGAHAGT
-GCTGTCAA---
A C T G A C T G G T A C A C G T A C T G C G A T A T C G C G T A G A T C C G T A A C T G C G A T
A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GGCTGTGAHAGT
-CCTGTCAA---
A C T G A C T G G T A C A C G T A C T G C G A T A T C G C G T A G A T C C G T A A C T G C G A T
A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GGCTGTGAHAGT
VGCTGWCAVB--
A C T G A C T G G T A C A C G T A C T G C G A T A T C G C G T A G A T C C G T A A C T G C G A T
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GGCTGTGAHAGT
AAGCACCTGTCAATAT
A C G T A C G T A C G T A C G T A C T G A C T G G T A C A C G T A C T G C G A T A T C G C G T A G A T C C G T A A C T G C G A T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GGCTGTGAHAGT
TGTCTGDCACCT-
A C G T A C T G A C T G G T A C A C G T A C T G C G A T A T C G C G T A G A T C C G T A A C T G C G A T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T

Gfi1b/MA0483.1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGCTGTGAHAGT
TGCTGTGATTT-
A C T G A C T G G T A C A C G T A C T G C G A T A T C G C G T A G A T C C G T A A C T G C G A T
C G A T C T A G G A T C G C A T A T C G C G A T A C T G T C G A A G C T A C G T A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GGCTGTGAHAGT
-RHTGWCAR---
A C T G A C T G G T A C A C G T A C T G C G A T A T C G C G T A G A T C C G T A A C T G C G A T
A C G T C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T A C G T

TCF7/MA0769.2/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GGCTGTGAHAGT
TCCTTTGATGT-
A C T G A C T G G T A C A C G T A C T G C G A T A T C G C G T A G A T C C G T A A C T G C G A T
A C G T A G T C T G A C G C A T C G A T C G A T A C T G C G T A C G A T T A C G G C A T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GGCTGTGAHAGT
TWGTCTGV------
A C G T A C G T A C T G A C T G G T A C A C G T A C T G C G A T A T C G C G T A G A T C C G T A A C T G C G A T
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T