Information for 20-CCAATCCTCG (Motif 38)

A G T C A G T C C G T A C G T A A C G T A G T C A G T C A C G T A G T C A C T G
Reverse Opposite:
A G T C A C T G C G T A A C T G A C T G C G T A A C G T A C G T A C T G A C T G
p-value:1e-3
log p-value:-7.225e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif9.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets160.0 +/- 0.0bp
Average Position of motif in Background101.9 +/- 70.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFYC/MA1644.1/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CCAATCCTCG
AGCCAATCAGA-
A C G T A C G T A G T C A G T C C G T A C G T A A C G T A G T C A G T C A C G T A G T C A C T G
T C G A C T A G A G T C G T A C G C T A T C G A G A C T T A G C T C G A T A C G T G C A A C G T

NFYA/MA0060.3/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CCAATCCTCG
AACCAATCAGA-
A C G T A C G T A G T C A G T C C G T A C G T A A C G T A G T C A G T C A C G T A G T C A C T G
T C G A C T G A A G T C G A T C G C T A T C G A G A C T T A G C T C G A T A C G T G C A A C G T

Crx/MA0467.1/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CCAATCCTCG-
CTAATCCTCTT
A G T C A G T C C G T A C G T A A C G T A G T C A G T C A C G T A G T C A C T G A C G T
G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CCAATCCTCG--
SSAATCCACANN
A G T C A G T C C G T A C G T A A C G T A G T C A G T C A C G T A G T C A C T G A C G T A C G T
A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

OTX2/MA0712.2/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCAATCCTCG
NNCTAATCCCNN
A C G T A C G T A G T C A G T C C G T A C G T A A C G T A G T C A G T C A C G T A G T C A C T G
G C A T G C A T G A T C G C A T C G T A G T C A C A G T G A T C G A T C G A T C G C A T C G A T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CCAATCCTCG
NYTAATCCYB-
A C G T A G T C A G T C C G T A C G T A A C G T A G T C A G T C A C G T A G T C A C T G
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCAATCCTCG
GCTAATCC---
A C G T A G T C A G T C C G T A C G T A A C G T A G T C A G T C A C G T A G T C A C T G
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:8
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CCAATCCTCG
ACTAGCCAATCA---
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A G T C A G T C A C G T A G T C A C T G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCAATCCTCG
GCTAATCCCC-
A C G T A G T C A G T C C G T A C G T A A C G T A G T C A G T C A C G T A G T C A C T G
T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C A C G T

GSC2/MA0891.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCAATCCTCG
CCTAATCCGC-
A C G T A G T C A G T C C G T A C G T A A C G T A G T C A G T C A C G T A G T C A C T G
T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C A C G T