Information for 5-GAGGGTGACAGG (Motif 5)

A C T G C T G A A C T G C T A G A C T G A C G T A C T G C T G A G A T C C G T A A T C G A T C G
Reverse Opposite:
A T G C A T G C A C G T C T A G A G C T A G T C G T C A A G T C G A T C A G T C A G C T A G T C
p-value:1e-16
log p-value:-3.824e+01
Information Content per bp:1.837
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.23%
Number of Background Sequences with motif11.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets75.8 +/- 46.5bp
Average Position of motif in Background86.6 +/- 37.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX3/MA1114.1/Jaspar

Match Rank:1
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--GAGGGTGACAGG---
GGGTGAGTGACAGGCGG
A C G T A C G T A C T G C T G A A C T G C T A G A C T G A C G T A C T G C T G A G A T C C G T A A T C G A T C G A C G T A C G T A C G T
T A C G A C T G A C T G C G A T T C A G C G T A A C T G C A G T T A C G C T G A T A G C C T G A A C T G T A C G A T G C T C A G A T C G

Spz1/MA0111.1/Jaspar

Match Rank:2
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GAGGGTGACAGG
-AGGGTAACAGC
A C T G C T G A A C T G C T A G A C T G A C G T A C T G C T G A G A T C C G T A A T C G A T C G
A C G T C T G A A T C G C T A G A C T G C A G T C G T A C G T A T A G C C T G A A C T G T A G C

PKNOX1/MA0782.2/Jaspar

Match Rank:3
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GAGGGTGACAGG--
TTTGAGTGACAGCTA
A C G T A C T G C T G A A C T G C T A G A C T G A C G T A C T G C T G A G A T C C G T A A T C G A T C G A C G T A C G T
C G A T G C A T C G A T T C A G C T G A A C T G C G A T A T C G C T G A G A T C C G T A A C T G T A G C A G C T C T G A

PB0114.1_Egr1_2/Jaspar

Match Rank:4
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----GAGGGTGACAGG
TGCGGAGTGGGACTGG
A C G T A C G T A C G T A C G T A C T G C T G A A C T G C T A G A C T G A C G T A C T G C T G A G A T C C G T A A T C G A T C G
A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G

MEIS3/MA0775.1/Jaspar

Match Rank:5
Score:0.69
Offset:4
Orientation:forward strand
Alignment:GAGGGTGACAGG
----TTGACAGG
A C T G C T G A A C T G C T A G A C T G A C G T A C T G C T G A G A T C C G T A A T C G A T C G
A C G T A C G T A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.68
Offset:4
Orientation:forward strand
Alignment:GAGGGTGACAGG
----TTGACAGC
A C T G C T G A A C T G C T A G A C T G A C G T A C T G C T G A G A T C C G T A A T C G A T C G
A C G T A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:7
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GAGGGTGACAGG-
-TGAGTGACAGSC
A C T G C T G A A C T G C T A G A C T G A C G T A C T G C T G A G A T C C G T A A T C G A T C G A C G T
A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:GAGGGTGACAGG-
---VBTGWCAGCB
A C T G C T G A A C T G C T A G A C T G A C G T A C T G C T G A G A T C C G T A A T C G A T C G A C G T
A C G T A C G T A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

PH0141.1_Pknox2/Jaspar

Match Rank:9
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GAGGGTGACAGG-----
-NNATTGACAGGTGCTT
A C T G C T G A A C T G C T A G A C T G A C G T A C T G C T G A G A T C C G T A A T C G A T C G A C G T A C G T A C G T A C G T A C G T
A C G T T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GAGGGTGACAGG
NTGATTGACAGN
A C T G C T G A A C T G C T A G A C T G A C G T A C T G C T G A G A T C C G T A A T C G A T C G
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G