Information for 22-GTTTTATTAC (Motif 33)

A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G T C
Reverse Opposite:
A C T G A C G T C G T A C G T A A C G T C G T A C G T A C G T A C G T A A G T C
p-value:1e-2
log p-value:-6.875e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif151.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets41.0 +/- 0.0bp
Average Position of motif in Background126.7 +/- 169.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD9/MA0913.2/Jaspar

Match Rank:1
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:GTTTTATTAC
NTTTTATTGC
A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G T C
C T A G C A G T A C G T C G A T C G A T C G T A A G C T C A G T T C A G A G T C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:2
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:GTTTTATTAC
NTTTTATGAC
A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G T C
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

CDX4/MA1473.1/Jaspar

Match Rank:3
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:GTTTTATTAC-
GTTTTATTGCC
A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G T C A C G T
T C A G C A G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G T C G T A C

HOXA10/MA0899.1/Jaspar

Match Rank:4
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:GTTTTATTAC-
NTTTTATTACN
A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G T C A C G T
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

CDX1/MA0878.2/Jaspar

Match Rank:5
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:GTTTTATTAC-
GTTTTATGGCC
A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G T C A C G T
T C A G C A G T A G C T A C G T A G C T C G T A A C G T A C T G T C A G G A T C G T A C

PH0046.1_Hoxa10/Jaspar

Match Rank:6
Score:0.83
Offset:-3
Orientation:reverse strand
Alignment:---GTTTTATTAC---
TNAATTTTATTACCTN
A C G T A C G T A C G T A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G T C A C G T A C G T A C G T
G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A

PH0013.1_Cdx2/Jaspar

Match Rank:7
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--GTTTTATTAC----
NAATTTTATTACCNNN
A C G T A C G T A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

PH0012.1_Cdx1/Jaspar

Match Rank:8
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--GTTTTATTAC----
NAATTTTATTACCTNN
A C G T A C G T A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T
C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A

PH0075.1_Hoxd10/Jaspar

Match Rank:9
Score:0.79
Offset:-4
Orientation:reverse strand
Alignment:----GTTTTATTAC---
NTNAATTTTATTGNATT
A C G T A C G T A C G T A C G T A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G T C A C G T A C G T A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:GTTTTATTAC--
NTTTCATTRCHD
A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G T C A C G T A C G T
C G A T G C A T A C G T C G A T A G T C C G T A A C G T A C G T C T A G A G T C G A C T C A G T