Information for 6-CATGCTCATCAA (Motif 8)

A G T C C G T A A C G T A C T G A G T C A C G T A G T C C G T A A C G T A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G C G T A A C G T A C T G C G T A A C T G A G T C C G T A A C G T A C T G
p-value:1e-4
log p-value:-9.307e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets171.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CATGCTCATCAA
TATGCWAATBAV
A G T C C G T A A C G T A C T G A G T C A C G T A G T C C G T A A C G T A G T C C G T A C G T A
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

PH0151.1_Pou6f1_1/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CATGCTCATCAA----
NNNACCTCATTATCNTN
A C G T A G T C C G T A A C G T A C T G A G T C A C G T A G T C C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T
C A T G G A T C G T C A C G T A T A C G G T A C A C G T G T A C C G T A C G A T C G A T C G T A C G A T A T G C A C T G C G A T A G T C

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CATGCTCATCAA
WATGCAAATGAG
A G T C C G T A A C G T A C T G A G T C A C G T A G T C C G T A A C G T A G T C C G T A C G T A
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

PH0068.1_Hoxc13/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CATGCTCATCAA----
AAAGCTCGTAAAATTT
A G T C C G T A A C G T A C T G A G T C A C G T A G T C C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

POU6F2/MA0793.1/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CATGCTCATCAA
--AGCTCATTAT
A G T C C G T A A C G T A C T G A G T C A C G T A G T C C G T A A C G T A G T C C G T A C G T A
A C G T A C G T C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T

PH0134.1_Pbx1/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CATGCTCATCAA------
-TCACCCATCAATAAACA
A G T C C G T A A C G T A C T G A G T C A C G T A G T C C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

POU6F1(var.2)/MA1549.1/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CATGCTCATCAA
--NNCTCATTAT
A G T C C G T A A C G T A C T G A G T C A C G T A G T C C G T A A C G T A G T C C G T A C G T A
A C G T A C G T G C T A A T G C T G A C C G A T T G A C G T C A A C G T A G C T C T G A G A C T

PH0152.1_Pou6f1_2/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CATGCTCATCAA----
GCAACCTCATTATNNNN
A C G T A G T C C G T A A C G T A C T G A G T C A C G T A G T C C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T
C A T G G T A C G T C A C G T A A T G C G T A C A C G T G T A C C G T A A C G T C G A T C G T A C G A T A T C G C G A T C A G T A G C T

PH0016.1_Cux1_1/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CATGCTCATCAA-----
TNAGNTGATCAACCGGT
A G T C C G T A A C G T A C T G A G T C A C G T A G T C C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
G A C T T A G C G C T A A T C G C A T G C G A T C T A G C G T A A G C T G A T C C G T A C T G A A G T C A G T C C T A G T A C G G A C T

HOXC13/MA0907.1/Jaspar

Match Rank:10
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CATGCTCATCAA--
---GCTCGTAAAAA
A G T C C G T A A C G T A C T G A G T C A C G T A G T C C G T A A C G T A G T C C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A