Information for 21-GGACTAGTTG (Motif 33)

A C T G A C T G C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C T G
Reverse Opposite:
A G T C C G T A C G T A A G T C A C G T C G T A A C T G A C G T A G T C A G T C
p-value:1e-3
log p-value:-6.990e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif6.25%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets100.0 +/- 0.0bp
Average Position of motif in Background53.7 +/- 10.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0040.1_Hmbox1/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GGACTAGTTG-----
GAAAACTAGTTAACATC
A C G T A C G T A C T G A C T G C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

HMBOX1/MA0895.1/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GGACTAGTTG--
--ACTAGTTAAC
A C T G A C T G C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C T G A C G T A C G T
A C G T A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

OTX2/MA0712.2/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GGACTAGTTG
AAGGGATTAGAA-
A C G T A C G T A C G T A C T G A C T G C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C T G
G C T A C G T A C T A G C T A G C T A G G T C A C A G T G C A T C G T A C T A G C G T A C G T A A C G T

PITX1/MA0682.2/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGACTAGTTG
NGGATTAN---
A C G T A C T G A C T G C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C T G
C A T G T C A G C A T G G T C A A C G T A C G T C G T A C T A G A C G T A C G T A C G T

PH0129.1_Otx1/Jaspar

Match Rank:5
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GGACTAGTTG--
AGAGGGGATTAATTTAT
A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C T G A C G T A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

PH0138.1_Pitx2/Jaspar

Match Rank:6
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GGACTAGTTG--
TGAAGGGATTAATCATC
A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C T G A C G T A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

PH0130.1_Otx2/Jaspar

Match Rank:7
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----GGACTAGTTG--
TGTAGGGATTAATTGTC
A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C T G A C G T A C G T
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

LHX2/MA0700.2/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GGACTAGTTG---
--NNTAATTGGNN
A C T G A C T G C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C T G A C G T A C G T A C G T
A C G T A C G T C G T A G C A T C G A T C G T A G C T A C G A T C G A T C T A G T A C G G C A T G C A T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GGACTAGTTG
GGATTAGC--
A C T G A C T G C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C T G
T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T

Dmbx1/MA0883.1/Jaspar

Match Rank:10
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------GGACTAGTTG-
TGAACCGGATTAATGAA
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C T G A C G T
G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A