Information for 3-CAAATAGCCG (Motif 12)

A G T C C G T A C G T A G T C A A C G T C T G A C A T G A T G C A G T C C T A G
Reverse Opposite:
A G T C A C T G A T C G G T A C A G C T C G T A A C G T A C G T A C G T A C T G
p-value:1e-4
log p-value:-9.684e+00
Information Content per bp:1.843
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif895.6
Percentage of Background Sequences with motif1.41%
Average Position of motif in Targets97.2 +/- 61.8bp
Average Position of motif in Background98.9 +/- 73.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MSGN1/MA1524.1/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CAAATAGCCG
NNACATATGGCN-
A C G T A C G T A C G T A G T C C G T A C G T A G T C A A C G T C T G A C A T G A T G C A G T C C T A G
A T C G T C A G T G C A A T G C T C G A G C A T C G T A A G C T A T C G T A C G A G T C T A C G A C G T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CAAATAGCCG
CCAAAAATAG---
A C G T A C G T A C G T A G T C C G T A C G T A G T C A A C G T C T G A C A T G A T G C A G T C C T A G
G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T A C G T A C G T

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:3
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CAAATAGCCG
KCCAAAAATAGC--
A C G T A C G T A C G T A C G T A G T C C G T A C G T A G T C A A C G T C T G A C A T G A T G C A G T C C T A G
A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C A C G T A C G T

MYB/MA0100.3/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CAAATAGCCG
ACCAACTGTC--
A C G T A C G T A G T C C G T A C G T A G T C A A C G T C T G A C A T G A T G C A G T C C T A G
G T C A A G T C A G T C C T G A G C T A A G T C A C G T T C A G G A C T G T A C A C G T A C G T

PH0089.1_Isx/Jaspar

Match Rank:5
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CAAATAGCCG-
ACTCCTAATTAGTCGT
A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A G T C A A C G T C T G A C A T G A T G C A G T C C T A G A C G T
G C T A T G A C A G C T T G A C G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C G T A G T C T A C G C G A T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CAAATAGCCG
DCYAAAAATAGM--
A C G T A C G T A C G T A C G T A G T C C G T A C G T A G T C A A C G T C T G A C A T G A T G C A G T C C T A G
C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T A C G T

Msx3/MA0709.1/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CAAATAGCCG
CCAATTAA---
A C G T A G T C C G T A C G T A G T C A A C G T C T G A C A T G A T G C A G T C C T A G
T A G C G A T C T C G A T G C A A C G T G A C T C G T A T C G A A C G T A C G T A C G T

GBX2/MA0890.1/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CAAATAGCCG
ACCAATTAGC--
A C G T A C G T A G T C C G T A C G T A G T C A A C G T C T G A C A T G A T G C A G T C C T A G
T C G A A T G C G A T C T C G A T G C A A C G T A C G T G C T A T C A G A T G C A C G T A C G T

LHX2/MA0700.2/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CAAATAGCCG
AACCAATTAAT--
A C G T A C G T A C G T A G T C C G T A C G T A G T C A A C G T C T G A C A T G A T G C A G T C C T A G
C G T A C G T A A T G C G A T C G C T A G C T A C G A T C G A T G C T A C G T A G C A T A C G T A C G T

HESX1/MA0894.1/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CAAATAGCCG
NCCAATTANC--
A C G T A C G T A G T C C G T A C G T A G T C A A C G T C T G A C A T G A T G C A G T C C T A G
C T A G A G T C G A T C C T G A G T C A A G C T G A C T G C T A C T A G A G T C A C G T A C G T