Information for 3-GCAGGGAT (Motif 18)

A C T G A G T C C G T A A C T G A C T G A C T G C T G A A C G T
Reverse Opposite:
C G T A A G C T A G T C A G T C G T A C A C G T A C T G A G T C
p-value:1e-3
log p-value:-8.345e+00
Information Content per bp:1.920
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif27.27%
Number of Background Sequences with motif994.3
Percentage of Background Sequences with motif1.16%
Average Position of motif in Targets57.8 +/- 49.5bp
Average Position of motif in Background102.0 +/- 80.8bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GCAGGGAT--
GCAGTGATTT
A C T G A G T C C G T A A C T G A C T G A C T G C T G A A C G T A C G T A C G T
C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:2
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GCAGGGAT
CACAGCAGGGG-
A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C T G A C T G A C T G C T G A A C G T
T A G C T C G A A G T C T G C A T A C G A G T C T C G A A T C G A C T G T A C G T C A G A C G T

GFI1/MA0038.2/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGGAT---
TGCAGTGATTTN
A C G T A C T G A G T C C G T A A C T G A C T G A C T G C T G A A C G T A C G T A C G T A C G T
C A G T C T A G G A T C G T C A A T C G C G A T C A T G C G T A C G A T A C G T A C G T T C A G

Gfi1b/MA0483.1/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGGAT--
TGCTGTGATTT
A C G T A C T G A G T C C G T A A C T G A C T G A C T G C T G A A C G T A C G T A C G T
C G A T C T A G G A T C G C A T A T C G C G A T A C T G T C G A A G C T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GCAGGGAT
CACAGCAGGGGG
A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C T G A C T G A C T G C T G A A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic2/MA1629.1/Jaspar

Match Rank:6
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------GCAGGGAT
CTCACAGCAGGGGG
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C T G A C T G A C T G C T G A A C G T
T G A C C A G T T G A C G C T A T A G C G T C A T A C G A G T C C T G A C A T G A T C G C T A G T C A G T C A G

RHOXF1/MA0719.1/Jaspar

Match Rank:7
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GCAGGGAT---
---NGGATTAN
A C T G A G T C C G T A A C T G A C T G A C T G C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----GCAGGGAT--
DCHCAGCAGGRGGCC
A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C T G A C T G A C T G C T G A A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

TCF12(var.2)/MA1648.1/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GCAGGGAT-
NNGCAGGTGNN
A C G T A C G T A C T G A G T C C G T A A C T G A C T G A C T G C T G A A C G T A C G T
T A G C T C A G T C A G A G T C T C G A A T C G T A C G A G C T T C A G A T G C A T C G

Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGGAT-
RGCAGGTGYA
A C G T A C T G A G T C C G T A A C T G A C T G A C T G C T G A A C G T A C G T
T C G A T C A G T A G C C G T A T A C G T A C G A G C T C A T G A G C T T C G A