Information for 23-GTCCATCACC (Motif 33)

A C T G C G A T A G T C A G T C C G T A A G C T A G T C C G T A A T G C A G T C
Reverse Opposite:
A C T G A T C G A C G T A C T G C T G A C G A T A C T G A C T G C G T A A G T C
p-value:1e-2
log p-value:-6.733e+00
Information Content per bp:1.926
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif83.2
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets86.4 +/- 53.5bp
Average Position of motif in Background103.0 +/- 63.5bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GTCCATCACC-
CTGTCTGTCACCT
A C G T A C G T A C T G C G A T A G T C A G T C C G T A A G C T A G T C C G T A A T G C A G T C A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:2
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GTCCATCACC
SCTGTCAVTCAV-
A C G T A C G T A C G T A C T G C G A T A G T C A G T C C G T A A G C T A G T C C G T A A T G C A G T C
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GTCCATCACC-
TGTCTGDCACCT
A C G T A C T G C G A T A G T C A G T C C G T A A G C T A G T C C G T A A T G C A G T C A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GTCCATCACC
NCTGTCAATCAN-
A C G T A C G T A C G T A C T G C G A T A G T C A G T C C G T A A G C T A G T C C G T A A T G C A G T C
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GTCCATCACC
YCATCMATCA--
A C G T A C G T A C T G C G A T A G T C A G T C C G T A A G C T A G T C C G T A A T G C A G T C
G A T C G T A C C T G A A C G T G A T C G T C A C T G A A C G T G A T C G C T A A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GTCCATCACC
GYCATCMATCAT-
A C G T A C G T A C G T A C T G C G A T A G T C A G T C C G T A A G C T A G T C C G T A A T G C A G T C
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GTCCATCACC
GGCCATTAAC
A C T G C G A T A G T C A G T C C G T A A G C T A G T C C G T A A T G C A G T C
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GTCCATCACC-
KGCCCTTCCCCA
A C G T A C T G C G A T A G T C A G T C C G T A A G C T A G T C C G T A A T G C A G T C A C G T
C A G T C A T G G A T C G A T C G A T C G A C T A G C T T G A C G A T C G A T C G A T C C T G A

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GTCCATCACC
GGCTCYAKCAYC
A C G T A C G T A C T G C G A T A G T C A G T C C G T A A G C T A G T C C G T A A T G C A G T C
C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GTCCATCACC-
TGACCTTGACCT
A C G T A C T G C G A T A G T C A G T C C G T A A G C T A G T C C G T A A T G C A G T C A C G T
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T