Information for 5-CGTCGTGA (Motif 33)

A G T C A C T G A C G T A G T C A C T G A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A A G T C A C T G C G T A A G T C A C T G
p-value:1e-2
log p-value:-5.760e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif7.69%
Number of Background Sequences with motif17.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets87.0 +/- 0.0bp
Average Position of motif in Background110.5 +/- 86.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer

Match Rank:1
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-CGTCGTGA---
NHGTCGTGAYDN
A C G T A G T C A C T G A C G T A G T C A C T G A C G T A C T G C G T A A C G T A C G T A C G T
C T A G G T C A C A T G A C G T A T G C T C A G C A G T A C T G G T C A A G T C C G A T A G T C

HOXA9/MA0594.2/Jaspar

Match Rank:2
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CGTCGTGA---
-GTCGTAAACG
A G T C A C T G A C G T A G T C A C T G A C G T A C T G C G T A A C G T A C G T A C G T
A C G T T C A G G A C T G T A C T C A G A G C T G C T A G C T A G C T A G A T C T A C G

PH0077.1_Hoxd12/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CGTCGTGA------
CAAGGTCGTAAAATCTT
A C G T A C G T A C G T A G T C A C T G A C G T A G T C A C T G A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T

HOXB9/MA1503.1/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CGTCGTGA---
-GTCGTAAAAT
A G T C A C T G A C G T A G T C A C T G A C G T A C T G C G T A A C G T A C G T A C G T
A C G T T C A G A G C T A G T C T C A G A C G T G C T A C G T A G T C A G C T A G A C T

HOXC9/MA0485.2/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CGTCGTGA---
-GTCGTAAAAT
A G T C A C T G A C G T A G T C A C T G A C G T A C T G C G T A A C G T A C G T A C G T
A C G T T C A G A G C T A G T C C T A G A C G T C G T A C G T A G T C A G C T A G A C T

PH0076.1_Hoxd11/Jaspar

Match Rank:6
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CGTCGTGA------
TAAGGTCGTAAAATCCT
A C G T A C G T A C G T A G T C A C T G A C G T A G T C A C T G A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T C A G T C A G A G C T G A T C C T A G A C G T C G T A C G T A G C T A G C T A G C A T G A T C G A T C C A G T

HOXD11/MA0908.1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CGTCGTGA---
-GTCGTAAAAA
A G T C A C T G A C G T A G T C A C T G A C G T A C T G C G T A A C G T A C G T A C G T
A C G T T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A

PH0065.1_Hoxc10/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CGTCGTGA-----
TAAAGTCGTAAAACGT
A C G T A C G T A C G T A G T C A C T G A C G T A G T C A C T G A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

PH0066.1_Hoxc11/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CGTCGTGA-----
TAAAGTCGTAAAATAG
A C G T A C G T A C G T A G T C A C T G A C G T A G T C A C T G A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

RXRG(var.2)/MA1556.1/Jaspar

Match Rank:10
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CGTCGTGA----
GAGGTCATGACCTC
A C G T A C G T A G T C A C T G A C G T A G T C A C T G A C G T A C T G C G T A A C G T A C G T A C G T A C G T
T C A G T C G A A T C G C A T G C A G T A G T C C T G A A C G T T C A G G T C A T G A C A T G C A G C T A G T C