Information for 6-AAGTAGGTGACG (Motif 9)

C G T A C G T A A C T G A C G T C G T A A C T G A C T G A C G T A C T G C G T A A G T C A C T G
Reverse Opposite:
A G T C A C T G A C G T A G T C C G T A A G T C A G T C A C G T C G T A A G T C A C G T A C G T
p-value:1e-4
log p-value:-9.590e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets86.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-AAGTAGGTGACG
WAABTAGGTCAV-
A C G T C G T A C G T A A C T G A C G T C G T A A C T G A C T G A C G T A C T G C G T A A G T C A C T G
C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G A C G T

ZKSCAN1/MA1585.1/Jaspar

Match Rank:2
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AAGTAGGTGACG
ATAGTAGGTG---
A C G T C G T A C G T A A C T G A C G T C G T A A C T G A C T G A C G T A C T G C G T A A G T C A C T G
T C G A A G C T T G C A C T A G A C G T G T C A A T C G C A T G A G C T T A C G A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:3
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---AAGTAGGTGACG
TATAAGTAGGTCAA-
A C G T A C G T A C G T C G T A C G T A A C T G A C G T C G T A A C T G A C T G A C G T A C T G C G T A A G T C A C T G
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AAGTAGGTGACG
AAYTAGGTCA--
C G T A C G T A A C T G A C G T C G T A A C T G A C T G A C G T A C T G C G T A A G T C A C T G
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AAGTAGGTGACG
AAYTAGGTCA--
C G T A C G T A A C T G A C G T C G T A A C T G A C T G A C G T A C T G C G T A A G T C A C T G
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T

RORC/MA1151.1/Jaspar

Match Rank:6
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AAGTAGGTGACG
ATAAGTAGGTCA--
A C G T A C G T C G T A C G T A A C T G A C G T C G T A A C T G A C T G A C G T A C T G C G T A A G T C A C T G
C T G A C G A T G C T A C G T A A C T G A C G T T C G A C A T G C T A G A C G T A G T C C T G A A C G T A C G T

RORB/MA1150.1/Jaspar

Match Rank:7
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AAGTAGGTGACG
AATTAGGTCAC-
C G T A C G T A A C T G A C G T C G T A A C T G A C T G A C G T A C T G C G T A A G T C A C T G
C G T A G C T A C G A T A C G T C T G A A C T G C T A G A G C T G A T C C T G A G A T C A C G T

ZKSCAN5/MA1652.1/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AAGTAGGTGACG-
GGAGGAGGTGAGAA
A C G T C G T A C G T A A C T G A C G T C G T A A C T G A C T G A C G T A C T G C G T A A G T C A C T G A C G T
C T A G T C A G C T G A C T A G T C A G T G C A C T A G C T A G A G C T T C A G T C G A C A T G T C G A T C G A

PB0117.1_Eomes_2/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AAGTAGGTGACG----
GCGGAGGTGTCGCCTC
C G T A C G T A A C T G A C G T C G T A A C T G A C T G A C G T A C T G C G T A A G T C A C T G A C G T A C G T A C G T A C G T
T A C G A T C G T C A G C T A G C T G A T A C G A T C G A G C T T C A G C G A T G A T C A C T G T A G C A G T C A G C T T A G C

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AAGTAGGTGACG--
AAWCTAGGTCARDNN
A C G T C G T A C G T A A C T G A C G T C G T A A C T G A C T G A C G T A C T G C G T A A G T C A C T G A C G T A C G T
C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A