Information for 9-GARGACATGTGA (Motif 10)

A T C G G C T A C T G A A C T G C T G A G T A C C G T A C G A T A C T G C G A T A C T G G T C A
Reverse Opposite:
A C G T G T A C C G T A T G A C G C T A A C G T A C T G A G C T G T A C A G C T C G A T A T G C
p-value:1e-9
log p-value:-2.082e+01
Information Content per bp:1.759
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.03%
Number of Background Sequences with motif369.4
Percentage of Background Sequences with motif0.77%
Average Position of motif in Targets99.9 +/- 52.2bp
Average Position of motif in Background96.9 +/- 57.3bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.31
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

USF1/MA0093.3/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GARGACATGTGA---
-TGGTCATGTGACCT
A T C G G C T A C T G A A C T G C T G A G T A C C G T A C G A T A C T G C G A T A C T G G T C A A C G T A C G T A C G T
A C G T C A G T C T A G T C A G A G C T T A G C G T C A A G C T T C A G C A G T A T C G T C G A A G T C G A T C G A C T

USF2/MA0526.3/Jaspar

Match Rank:2
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GARGACATGTGA---
-TGGTCATGTGACCT
A T C G G C T A C T G A A C T G C T G A G T A C C G T A C G A T A C T G C G A T A C T G G T C A A C G T A C G T A C G T
A C G T C A G T C T A G T C A G A G C T A T G C G T C A A G C T T C A G C A G T A T C G T C G A A G T C G A T C G C A T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:3
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:GARGACATGTGA---
---GWAAYHTGABMC
A T C G G C T A C T G A A C T G C T G A G T A C C G T A C G A T A C T G C G A T A C T G G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:4
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GARGACATGTGA-
---KCCACGTGAC
A T C G G C T A C T G A A C T G C T G A G T A C C G T A C G A T A C T G C G A T A C T G G T C A A C G T
A C G T A C G T A C G T A C T G T G A C G T A C C G T A A G T C T A C G A C G T A C T G G T C A A G T C

MXI1/MA1108.2/Jaspar

Match Rank:5
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GARGACATGTGA-
---NNCATGTGNN
A T C G G C T A C T G A A C T G C T G A G T A C C G T A C G A T A C T G C G A T A C T G G T C A A C G T
A C G T A C G T A C G T T A C G T G A C G A T C C T G A A G C T T C A G G A C T C T A G A G C T G A T C

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:6
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GARGACATGTGA---
---GWAAYHTGAKMC
A T C G G C T A C T G A A C T G C T G A G T A C C G T A C G A T A C T G C G A T A C T G G T C A A C G T A C G T A C G T
A C G T A C G T A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

MITF/MA0620.3/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GARGACATGTGA-----
NNNNGTCACGTGACNNNN
A C G T A T C G G C T A C T G A A C T G C T G A G T A C C G T A C G A T A C T G C G A T A C T G G T C A A C G T A C G T A C G T A C G T A C G T
G C A T C G T A C G T A C T G A T C A G A G C T T A G C G C T A A G T C T C A G C G A T A T C G T C G A A G T C G A C T G C A T G C A T C G T A

MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GARGACATGTGA
-DGCACACGTG-
A T C G G C T A C T G A A C T G C T G A G T A C C G T A C G A T A C T G C G A T A C T G G T C A
A C G T C T G A T C A G G T A C T G C A A G T C C G T A A G T C A C T G A C G T A C T G A C G T

MYOD1/MA0499.2/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GARGACATGTGA--
-NNGACAGGTGCNN
A T C G G C T A C T G A A C T G C T G A G T A C C G T A C G A T A C T G C G A T A C T G G T C A A C G T A C G T
A C G T T C A G C A T G T C A G T C G A T A G C T C G A A T C G T A C G G A C T A T C G A T G C G C A T T A C G

Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer

Match Rank:10
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GARGACATGTGA-----
--TGWAAYCTGABACCB
A T C G G C T A C T G A A C T G C T G A G T A C C G T A C G A T A C T G C G A T A C T G G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T A C T G C G T A G T C A C G T A A G C T G A T C A G C T A C T G C G T A A G T C G T C A A G T C A G T C A T C G