Information for 3-RGGTRARTRTTT (Motif 4)

T C G A A C T G C A T G A C G T C T A G C G T A C T A G A C G T C T G A A C G T C A G T A C G T
Reverse Opposite:
G T C A G T C A C G T A G A C T C G T A G A T C G C A T A G T C C G T A G T A C G T A C A G C T
p-value:1e-5
log p-value:-1.166e+01
Information Content per bp:1.826
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif14.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets91.0 +/- 45.0bp
Average Position of motif in Background110.3 +/- 76.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-RGGTRARTRTTT
CAGGTAAGTAT--
A C G T T C G A A C T G C A T G A C G T C T A G C G T A C T A G A C G T C T G A A C G T C A G T A C G T
T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:RGGTRARTRTTT
--TTAAGTGCTT
T C G A A C T G C A T G A C G T C T A G C G T A C T A G A C G T C T G A A C G T C A G T A C G T
A C G T A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:3
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:RGGTRARTRTTT
--NTAATKGTTT
T C G A A C T G C A T G A C G T C T A G C G T A C T A G A C G T C T G A A C G T C A G T A C G T
A C G T A C G T A G T C G C A T T C G A T C G A C A G T C A T G T A C G G A C T G A C T A G C T

BARX2/MA1471.1/Jaspar

Match Rank:4
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:RGGTRARTRTTT--
--NTAATGGTTTTN
T C G A A C T G C A T G A C G T C T A G C G T A C T A G A C G T C T G A A C G T C A G T A C G T A C G T A C G T
A C G T A C G T A T C G G C A T C T G A G T C A A G C T A C T G C T A G A C G T G C A T C G A T G C A T G A C T

NR1D2/MA1532.1/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:RGGTRARTRTTT---
GGGTTAGTGGGTCAT
T C G A A C T G C A T G A C G T C T A G C G T A C T A G A C G T C T G A A C G T C A G T A C G T A C G T A C G T A C G T
T C A G C A T G C A T G A C G T G A C T C G T A A T C G A C G T C T A G C A T G C T A G C A G T A G T C C T G A C A G T

Foxd3/MA0041.1/Jaspar

Match Rank:6
Score:0.60
Offset:4
Orientation:forward strand
Alignment:RGGTRARTRTTT----
----GAATGTTTGTTT
T C G A A C T G C A T G A C G T C T A G C G T A C T A G A C G T C T G A A C G T C A G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G G C T A G C T A G A C T C T A G A C G T C G A T C A G T C T A G G A C T A C G T A G C T

MF0005.1_Forkhead_class/Jaspar

Match Rank:7
Score:0.59
Offset:7
Orientation:forward strand
Alignment:RGGTRARTRTTT----
-------TGTTTATTT
T C G A A C T G C A T G A C G T C T A G C G T A C T A G A C G T C T G A A C G T C A G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T A G A G C T G A C T C A G T C T G A A G C T C A G T A G C T

FOXL1/MA0033.2/Jaspar

Match Rank:8
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:RGGTRARTRTTT--
-------TGTTTAC
T C G A A C T G C A T G A C G T C T A G C G T A C T A G A C G T C T G A A C G T C A G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T C T A G A C G T C A G T A C G T C T G A G A T C

Nkx3-2/MA0122.3/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:RGGTRARTRTTT--
-NTTAAGTGGTTNN
T C G A A C T G C A T G A C G T C T A G C G T A C T A G A C G T C T G A A C G T C A G T A C G T A C G T A C G T
A C G T C G A T G C A T C G A T C T G A C G T A C A T G C G A T C T A G A C T G G C A T G C A T G C T A G C A T

HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:RGGTRARTRTTT--
--GTTAATNATTAA
T C G A A C T G C A T G A C G T C T A G C G T A C T A G A C G T C T G A A C G T C A G T A C G T A C G T A C G T
A C G T A C G T C T A G A C G T G C A T T C G A G T C A G C A T A T C G C G T A C A G T A G C T C T G A T G C A