Information for 2-ATTTTHACVAHG (Motif 2)

G T C A A C G T A C G T A C G T A C G T G A C T C G T A A G T C T C G A C G T A G A C T A C T G
Reverse Opposite:
A G T C C G T A A C G T A C G T A C T G A C G T C G T A C G T A G T C A C G T A G T C A A C G T
p-value:1e-7
log p-value:-1.703e+01
Information Content per bp:1.776
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif30.77%
Number of Background Sequences with motif145.4
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets107.5 +/- 40.5bp
Average Position of motif in Background94.4 +/- 64.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD11/MA0908.1/Jaspar

Match Rank:1
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:ATTTTHACVAHG
-NTTTTACGAC-
G T C A A C G T A C G T A C G T A C G T G A C T C G T A A G T C T C G A C G T A G A C T A C T G
A C G T C G A T C G A T C G A T C G A T C G A T C G T A A G T C C T A G C G T A A G T C A C G T

Hoxa11/MA0911.1/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:ATTTTHACVAHG
ANTTTTACGACC
G T C A A C G T A C G T A C G T A C G T G A C T C G T A A G T C T C G A C G T A G A C T A C T G
G C T A C G T A C G A T C G A T G C A T G C A T G C T A G A T C C T A G T C G A A G T C G A T C

HOXD12/MA0873.1/Jaspar

Match Rank:3
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:ATTTTHACVAHG
-NTTTTACGACT
G T C A A C G T A C G T A C G T A C G T G A C T C G T A A G T C T C G A C G T A G A C T A C T G
A C G T C A G T C G A T G C A T A G C T G C A T C T G A A G T C A T C G T C G A A G T C A G C T

HOXC9/MA0485.2/Jaspar

Match Rank:4
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:ATTTTHACVAHG
-NTTTTACGAC-
G T C A A C G T A C G T A C G T A C G T G A C T C G T A A G T C T C G A C G T A G A C T A C T G
A C G T C T G A C G A T A C G T A C G T C G A T G T C A A G T C A C T G C T G A A G T C A C G T

HOXB9/MA1503.1/Jaspar

Match Rank:5
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:ATTTTHACVAHG
-NTTTTACGAC-
G T C A A C G T A C G T A C G T A C G T G A C T C G T A A G T C T C G A C G T A G A C T A C T G
A C G T C T G A C G A T C A G T A C G T C G A T G T C A A G T C A C T G C T G A A G T C A C G T

HOXC11/MA0651.1/Jaspar

Match Rank:6
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:ATTTTHACVAHG
-NTTTTACGACC
G T C A A C G T A C G T A C G T A C G T G A C T C G T A A G T C T C G A C G T A G A C T A C T G
A C G T C G T A C G A T C A G T C G A T G C A T C G T A A G T C C T A G C T G A A G T C G A T C

HOXC12/MA0906.1/Jaspar

Match Rank:7
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:ATTTTHACVAHG
-NTTTTACGACC
G T C A A C G T A C G T A C G T A C G T G A C T C G T A A G T C T C G A C G T A G A C T A C T G
A C G T C G A T C A G T C G A T G C A T C G A T T C G A A G T C C A T G C T G A A G T C G A T C

HOXC10/MA0905.1/Jaspar

Match Rank:8
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:ATTTTHACVAHG
-NTTTTACGAC-
G T C A A C G T A C G T A C G T A C G T G A C T C G T A A G T C T C G A C G T A G A C T A C T G
A C G T C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C A C G T

HOXD10/MA1506.1/Jaspar

Match Rank:9
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:ATTTTHACVAHG
-NTTTTACGACC
G T C A A C G T A C G T A C G T A C G T G A C T C G T A A G T C T C G A C G T A G A C T A C T G
A C G T C T A G C G A T C A G T A C G T G C A T G T C A A G T C A C T G T C G A A G T C A G T C

PH0067.1_Hoxc12/Jaspar

Match Rank:10
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--ATTTTHACVAHG---
GNNNTTTTACGACCTNA
A C G T A C G T G T C A A C G T A C G T A C G T A C G T G A C T C G T A A G T C T C G A C G T A G A C T A C T G A C G T A C G T A C G T
C T A G G C T A T C G A C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C A G C T C G T A C T G A