Information for 3-GAKARCACTBTG (Motif 3)

A C T G C G T A A C T G G C T A T C A G T A G C C G T A A G T C G A C T A C G T C G A T C T A G
Reverse Opposite:
A G T C C G T A T G C A C G T A C T A G C G A T A C T G A G T C C A G T G T A C A C G T G T A C
p-value:1e-6
log p-value:-1.410e+01
Information Content per bp:1.611
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif64.29%
Number of Background Sequences with motif5703.8
Percentage of Background Sequences with motif9.43%
Average Position of motif in Targets106.8 +/- 53.3bp
Average Position of motif in Background101.0 +/- 70.5bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:1
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GAKARCACTBTG
--AAGCACTTAA
A C T G C G T A A C T G G C T A T C A G T A G C C G T A A G T C G A C T A C G T C G A T C T A G
A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

PB0099.1_Zfp691_1/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GAKARCACTBTG--
NNNNTGAGCACTGTNNG
A C G T A C G T A C G T A C T G C G T A A C T G G C T A T C A G T A G C C G T A A G T C G A C T A C G T C G A T C T A G A C G T A C G T
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:3
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GAKARCACTBTG
--MRSCACTYAA
A C T G C G T A A C T G G C T A T C A G T A G C C G T A A G T C G A C T A C G T C G A T C T A G
A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

Nkx3-1/MA0124.2/Jaspar

Match Rank:4
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GAKARCACTBTG
---ACCACTTAA
A C T G C G T A A C T G G C T A T C A G T A G C C G T A A G T C G A C T A C G T C G A T C T A G
A C G T A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A

TBX6/MA1567.1/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GAKARCACTBTG
-TTCACACCTN-
A C T G C G T A A C T G G C T A T C A G T A G C C G T A A G T C G A C T A C G T C G A T C T A G
A C G T G C A T G A C T T G A C C T G A G A T C C T G A A T G C A T G C G A C T G A T C A C G T

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GAKARCACTBTG---
AAGAACATWHTGTTC
A C T G C G T A A C T G G C T A T C A G T A G C C G T A A G T C G A C T A C G T C G A T C T A G A C G T A C G T A C G T
C G T A C T G A C T A G C G T A C G T A A G T C C G T A C A G T G C A T G T C A C G A T A C T G A C G T G C A T G A T C

ISL2/MA0914.1/Jaspar

Match Rank:7
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GAKARCACTBTG
----GCACTTAA
A C T G C G T A A C T G G C T A T C A G T A G C C G T A A G T C G A C T A C G T C G A T C T A G
A C G T A C G T A C G T A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A

Nkx3-2/MA0122.3/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GAKARCACTBTG-
ATAACCACTTAAA
A C T G C G T A A C T G G C T A T C A G T A G C C G T A A G T C G A C T A C G T C G A T C T A G A C G T
C G T A C G A T C G T A C G T A T G A C G A T C G C T A G T A C G C A T G A C T G C T A C G T A G C T A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GAKARCACTBTG
--AASCACTCAA
A C T G C G T A A C T G G C T A T C A G T A G C C G T A A G T C G A C T A C G T C G A T C T A G
A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

HNF4G/MA0484.2/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GAKARCACTBTG--
-NNTGGACTTTGNN
A C T G C G T A A C T G G C T A T C A G T A G C C G T A A G T C G A C T A C G T C G A T C T A G A C G T A C G T
A C G T G A C T A G T C G C A T C T A G C T A G G T C A T G A C G A C T A G C T A G C T C T A G T C A G G T C A