Information for 4-CCATARMWTGGG (Motif 4)

A G T C A G T C C G T A C A G T C G T A T C G A G T C A C G T A A C G T T A C G A T C G A C T G
Reverse Opposite:
G T A C A T G C A G T C C G T A G C A T C A G T A G C T A C G T G C T A G A C T C T A G T A C G
p-value:1e-4
log p-value:-9.937e+00
Information Content per bp:1.644
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif44.44%
Number of Background Sequences with motif2355.7
Percentage of Background Sequences with motif2.55%
Average Position of motif in Targets115.6 +/- 60.0bp
Average Position of motif in Background102.1 +/- 82.4bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0132.1_Hbp1_2/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCATARMWTGGG----
NNTNNACAATGGGANNN
A C G T A G T C A G T C C G T A C A G T C G T A T C G A G T C A C G T A A C G T T A C G A T C G A C T G A C G T A C G T A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

SOX2/MA0143.4/Jaspar

Match Rank:2
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CCATARMWTGGG-
--AAACAATGGAA
A G T C A G T C C G T A C A G T C G T A T C G A G T C A C G T A A C G T T A C G A T C G A C T G A C G T
A C G T A C G T C G T A C G T A G C T A G A T C G C T A T C G A C G A T C T A G C T A G C G T A G C T A

SOX13/MA1120.1/Jaspar

Match Rank:3
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CCATARMWTGGG-
--AAACAATGGCA
A G T C A G T C C G T A C A G T C G T A T C G A G T C A C G T A A C G T T A C G A T C G A C T G A C G T
A C G T A C G T C T G A T C G A C T G A A G T C G C T A C T G A G C A T C T A G T C A G T G A C G C T A

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:4
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CCATARMWTGGG
ATTTGCATACAATGG-
A C G T A C G T A C G T A C G T A G T C A G T C C G T A C A G T C G T A T C G A G T C A C G T A A C G T T A C G A T C G A C T G
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CCATARMWTGGG
-VRAACAATGG-
A G T C A G T C C G T A C A G T C G T A T C G A G T C A C G T A A C G T T A C G A T C G A C T G
A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CCATARMWTGGG
-CCAAAAATAG-
A G T C A G T C C G T A C A G T C G T A T C G A G T C A C G T A A C G T T A C G A T C G A C T G
A C G T G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T

Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CCATARMWTGGG
VVRRAACAATGG-
A C G T A G T C A G T C C G T A C A G T C G T A T C G A G T C A C G T A A C G T T A C G A T C G A C T G
T G A C T A G C T C A G T C G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T A C G A C G T

IRF6/MA1509.1/Jaspar

Match Rank:8
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:CCATARMWTGGG-
----AGTTTCGGT
A G T C A G T C C G T A C A G T C G T A T C G A G T C A C G T A A C G T T A C G A T C G A C T G A C G T
A C G T A C G T A C G T A C G T C T G A A T C G G A C T G C A T C G A T G A T C T A C G C T A G A G C T

SOX9/MA0077.1/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CCATARMWTGGG
--GAACAATGG-
A G T C A G T C C G T A C A G T C G T A T C G A G T C A C G T A A C G T T A C G A T C G A C T G
A C G T A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CCATARMWTGGG
--RAACAATGGN
A G T C A G T C C G T A C A G T C G T A T C G A G T C A C G T A A C G T T A C G A T C G A C T G
A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C