Information for 1-TTTTAHCAGCAT (Motif 1)

A C G T A C G T A G C T A C G T G T C A G A C T A G T C C G T A A C T G A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G A G T C A C G T A C T G C A G T A C G T C G T A C T G A G T C A G T C A
p-value:1e-6
log p-value:-1.473e+01
Information Content per bp:1.839
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif27.27%
Number of Background Sequences with motif116.3
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets93.0 +/- 65.8bp
Average Position of motif in Background100.7 +/- 80.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:TTTTAHCAGCAT-
---DCTCAGCAGG
A C G T A C G T A G C T A C G T G T C A G A C T A G T C C G T A A C T G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

GCM1/MA0646.1/Jaspar

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TTTTAHCAGCAT-
--GTACCCGCATN
A C G T A C G T A G C T A C G T G T C A G A C T A G T C C G T A A C T G A G T C C G T A A C G T A C G T
A C G T A C G T T A C G A G C T T C G A T A G C T G A C G T A C C A T G A G T C C G T A A G C T T C A G

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TTTTAHCAGCAT----
-CCACACAGCAGGAGA
A C G T A C G T A G C T A C G T G T C A G A C T A G T C C G T A A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Rhox11/MA0629.1/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TTTTAHCAGCAT---
TCNNTTTACAGCGNNNT
A C G T A C G T A C G T A C G T A G C T A C G T G T C A G A C T A G T C C G T A A C T G A G T C C G T A A C G T A C G T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

PH0157.1_Rhox11_1/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TTTTAHCAGCAT---
TCNNTTTACAGCGNNNT
A C G T A C G T A C G T A C G T A G C T A C G T G T C A G A C T A G T C C G T A A C T G A G T C C G T A A C G T A C G T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TTTTAHCAGCAT----
-GAGCACAGCAGGACA
A C G T A C G T A G C T A C G T G T C A G A C T A G T C C G T A A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:7
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:TTTTAHCAGCAT
--TTMACACCTT
A C G T A C G T A G C T A C G T G T C A G A C T A G T C C G T A A C T G A G T C C G T A A C G T
A C G T A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T

GCM2/MA0767.1/Jaspar

Match Rank:8
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:TTTTAHCAGCAT-
---TACCCGCATN
A C G T A C G T A G C T A C G T G T C A G A C T A G T C C G T A A C T G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T G A C T C T G A A G T C G T A C G T A C T A C G A G T C T C G A A G C T T G C A

PH0158.1_Rhox11_2/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TTTTAHCAGCAT---
TCNCTTTACAGCGNNNT
A C G T A C G T A C G T A C G T A G C T A C G T G T C A G A C T A G T C C G T A A C T G A G T C C G T A A C G T A C G T A C G T A C G T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TTTTAHCAGCAT----
-CCACACAGCAGGAGA
A C G T A C G T A G C T A C G T G T C A G A C T A G T C C G T A A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A