Information for 15-AGAGCATGACCC (Motif 28)

C G T A A C T G C G T A A C T G A G T C G T C A A C G T A C T G C G T A A G T C A G T C A G T C
Reverse Opposite:
A C T G A C T G A C T G A C G T A G T C C G T A A C G T C T A G A G T C A C G T A G T C A C G T
p-value:1e-3
log p-value:-9.004e+00
Information Content per bp:1.961
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.26%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets90.7 +/- 64.6bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)4.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5/MA0014.3/Jaspar

Match Rank:1
Score:0.73
Offset:1
Orientation:forward strand
Alignment:AGAGCATGACCC-
-GAGCGTGACCCC
C G T A A C T G C G T A A C T G A G T C G T C A A C G T A C T G C G T A A G T C A G T C A G T C A C G T
A C G T T C A G C T G A T A C G A G T C T C A G G C A T T A C G C T G A T A G C A G T C G T A C A G T C

RXRB(var.2)/MA1555.1/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AGAGCATGACCC-
GAGGTCATGACCTC
A C G T C G T A A C T G C G T A A C T G A G T C G T C A A C G T A C T G C G T A A G T C A G T C A G T C A C G T
T C A G T C G A C A T G A C T G A C G T A G T C T C G A G A C T T C A G T G C A G T A C G A T C G A C T A G T C

RXRG(var.2)/MA1556.1/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-AGAGCATGACCC-
GAGGTCATGACCTC
A C G T C G T A A C T G C G T A A C T G A G T C G T C A A C G T A C T G C G T A A G T C A G T C A G T C A C G T
T C A G T C G A A T C G C A T G C A G T A G T C C T G A A C G T T C A G G T C A T G A C A T G C A G C T A G T C

RARG(var.3)/MA1553.1/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AGAGCATGACCC-
AAGGTCATGACCTT
A C G T C G T A A C T G C G T A A C T G A G T C G T C A A C G T A C T G C G T A A G T C A G T C A G T C A C G T
C T G A T C G A C A T G C A T G C G A T A G T C C T G A G A C T T C A G G C T A G T A C G T A C A G C T G A C T

RARB(var.3)/MA1552.1/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AGAGCATGACCC-
AAGGTCATGACCTT
A C G T C G T A A C T G C G T A A C T G A G T C G T C A A C G T A C T G C G T A A G T C A G T C A G T C A C G T
C T G A T C G A A C T G C A T G A G C T A G T C C T G A G A C T T C A G T G C A G T A C G A T C A G C T G A C T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:6
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:AGAGCATGACCC------
--NNNNTGACCCGGCGCG
C G T A A C T G C G T A A C T G A G T C G T C A A C G T A C T G C G T A A G T C A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G

NR2C1/MA1535.1/Jaspar

Match Rank:7
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:AGAGCATGACCC--
-----NTGACCTCN
C G T A A C T G C G T A A C T G A G T C G T C A A C G T A C T G C G T A A G T C A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G A G C T A T C G G T C A A G T C G T A C A G C T G A T C C A T G

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.66
Offset:6
Orientation:reverse strand
Alignment:AGAGCATGACCC
------TGACCT
C G T A A C T G C G T A A C T G A G T C G T C A A C G T A C T G C G T A A G T C A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

NR2C2(var.2)/MA1536.1/Jaspar

Match Rank:9
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:AGAGCATGACCC-
-----NTGACCTN
C G T A A C T G C G T A A C T G A G T C G T C A A C G T A C T G C G T A A G T C A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A G C T T C A G G T C A G T A C T G A C A G C T A G T C

PB0118.1_Esrra_2/Jaspar

Match Rank:10
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AGAGCATGACCC------
-NNNNTTGACCCCTNNNN
C G T A A C T G C G T A A C T G A G T C G T C A A C G T A C T G C G T A A G T C A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A T G T A G C T A G C G A T C C G A T A G C T T C A G G C T A G T A C G A T C A G T C A G T C C G A T T G A C T A C G G T A C A T G C