Information for 8-AAAACCCTAAAA (Motif 8)

G C T A C G T A T G C A C T G A A T G C G T A C G T A C A C G T C T G A C G T A C G T A C T G A
Reverse Opposite:
A G C T A C G T A C G T G A C T C G T A C A T G A C T G T A C G G A C T A C G T A C G T C G A T
p-value:1e-8
log p-value:-2.063e+01
Information Content per bp:1.857
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif26.5
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets95.6 +/- 48.9bp
Average Position of motif in Background99.3 +/- 50.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.44
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0064.1_Hoxb9/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AAAACCCTAAAA----
AGAGCCATAAAATTCG
G C T A C G T A T G C A C T G A A T G C G T A C G T A C A C G T C T G A C G T A C G T A C T G A A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:2
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AAAACCCTAAAA
--VGCCATAAAA
G C T A C G T A T G C A C T G A A T G C G T A C G T A C A C G T C T G A C G T A C G T A C T G A
A C G T A C G T T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AAAACCCTAAAA--
--NGYCATAAAWCH
G C T A C G T A T G C A C T G A A T G C G T A C G T A C A C G T C T G A C G T A C G T A C T G A A C G T A C G T
A C G T A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AAAACCCTAAAA
--KGCCATAAAA
G C T A C G T A T G C A C T G A A T G C G T A C G T A C A C G T C T G A C G T A C G T A C T G A
A C G T A C G T C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AAAACCCTAAAA-
-HDGYAATGAAAN
G C T A C G T A T G C A C T G A A T G C G T A C G T A C A C G T C T G A C G T A C G T A C T G A A C G T
A C G T G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A

PH0047.1_Hoxa11/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AAAACCCTAAAA---
TAAAGTCGTAAAACAT
A C G T G C T A C G T A T G C A C T G A A T G C G T A C G T A C A C G T C T G A C G T A C G T A C T G A A C G T A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

HOXB13/MA0901.2/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AAAACCCTAAAA---
-AACCAATAAAATTT
G C T A C G T A T G C A C T G A A T G C G T A C G T A C A C G T C T G A C G T A C G T A C T G A A C G T A C G T A C G T
A C G T C G T A C G T A G T A C G A T C G C T A C G T A A C G T C G T A G C T A G C T A G C T A G C A T G C A T G C A T

PH0066.1_Hoxc11/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AAAACCCTAAAA---
TAAAGTCGTAAAATAG
A C G T G C T A C G T A T G C A C T G A A T G C G T A C G T A C A C G T C T G A C G T A C G T A C T G A A C G T A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

PH0075.1_Hoxd10/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AAAACCCTAAAA-----
AATGCAATAAAATTTAT
G C T A C G T A T G C A C T G A A T G C G T A C G T A C A C G T C T G A C G T A C G T A C T G A A C G T A C G T A C G T A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:10
Score:0.58
Offset:3
Orientation:forward strand
Alignment:AAAACCCTAAAA-
---GTCATAAAAN
G C T A C G T A T G C A C T G A A T G C G T A C G T A C A C G T C T G A C G T A C G T A C T G A A C G T
A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T