Information for 16-CCATTTAAAT (Motif 29)

A G T C A G T C C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C T G A C T G
p-value:1e-4
log p-value:-1.122e+01
Information Content per bp:1.530
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif26.3
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets141.3 +/- 21.9bp
Average Position of motif in Background104.8 +/- 49.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.79
Offset:2
Orientation:forward strand
Alignment:CCATTTAAAT-
--ATTTGAATT
A G T C A G T C C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C G T
A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

PH0114.1_Nkx2-5/Jaspar

Match Rank:2
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----CCATTTAAAT--
TAAGCCACTTGAATTT
A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C G T A C G T
G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:3
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CCATTTAAAT
NGCAATTAAA-
A C G T A G T C A G T C C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:4
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----CCATTTAAAT--
CTTAACCACTTAAGGAT
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C G T A C G T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CCATTTAAAT
ACCACTTAA--
A C G T A G T C A G T C C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T

BARHL2/MA0635.1/Jaspar

Match Rank:6
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CCATTTAAAT
ANCGTTTANN-
A C G T A G T C A G T C C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T
C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C A C G T

Nkx3-2/MA0122.3/Jaspar

Match Rank:7
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CCATTTAAAT
ATAACCACTTAAA-
A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T
C G T A C G A T C G T A C G T A T G A C G A T C G C T A G T A C G C A T G A C T G C T A C G T A G C T A A C G T

LHX2/MA0700.2/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CCATTTAAAT
AACCAATTAAT-
A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T
C G T A C G T A A T G C G A T C G C T A G C T A C G A T C G A T G C T A C G T A G C A T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:9
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CCATTTAAAT---
AACCCAATAAAATTCG
A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

HOXB13/MA0901.2/Jaspar

Match Rank:10
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CCATTTAAAT--
AACCAATAAAATTT
A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C G T A C G T
C G T A C G T A G T A C G A T C G C T A C G T A A C G T C G T A G C T A G C T A G C T A G C A T G C A T G C A T