Information for 1-AGACGAGA (Motif 23)

G T C A C T A G G T C A A G T C A C T G C G T A T C A G G T C A
Reverse Opposite:
C A G T A G T C A C G T T G A C C T A G C A G T G A T C C A G T
p-value:1e-5
log p-value:-1.282e+01
Information Content per bp:1.796
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif3.21%
Number of Background Sequences with motif633.7
Percentage of Background Sequences with motif1.31%
Average Position of motif in Targets107.8 +/- 56.0bp
Average Position of motif in Background100.8 +/- 52.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GATA1/MA0035.4/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AGACGAGA-
NNAGATTAGAN
A C G T A C G T G T C A C T A G G T C A A G T C A C T G C G T A T C A G G T C A A C G T
C G T A G C A T C G T A C A T G C G T A C G A T G C A T G C T A C A T G C G T A G C T A

PB0139.1_Irf5_2/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGACGAGA-----
TTGACCGAGAATTCC
A C G T A C G T G T C A C T A G G T C A A G T C A C T G C G T A T C A G G T C A A C G T A C G T A C G T A C G T A C G T
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

Mecom/MA0029.1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGACGAGA-----
AAGATAAGATAACA
A C G T G T C A C T A G G T C A A G T C A C T G C G T A T C A G G T C A A C G T A C G T A C G T A C G T A C G T
C T G A C G T A A C T G C G T A G A C T C G T A C T G A A C T G C G T A A G C T G C T A C T G A A C G T G T C A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--AGACGAGA
BCAGACWA--
A C G T A C G T G T C A C T A G G T C A A G T C A C T G C G T A T C A G G T C A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AGACGAGA
CCAGACRSVB
A C G T A C G T G T C A C T A G G T C A A G T C A C T G C G T A T C A G G T C A
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

GATA6/MA1104.2/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AGACGAGA---
NNAGATAAGATAN
A C G T A C G T G T C A C T A G G T C A A G T C A C T G C G T A T C A G G T C A A C G T A C G T A C G T
C G T A C T G A C G T A C T A G C G T A G C A T C G T A C G T A T A C G T C G A C G A T C G T A C G T A

PB0138.1_Irf4_2/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGACGAGA-----
GNNACCGAGAATNNN
A C G T A C G T G T C A C T A G G T C A A G T C A C T G C G T A T C A G G T C A A C G T A C G T A C G T A C G T A C G T
A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AGACGAGA
CCAGACAG--
A C G T A C G T G T C A C T A G G T C A A G T C A C T G C G T A T C A G G T C A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

PB0106.1_Arid5a_2/Jaspar

Match Rank:9
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------AGACGAGA---
CATACAATACGAAATAA
A C G T A C G T A C G T A C G T A C G T A C G T G T C A C T A G G T C A A G T C A C T G C G T A T C A G G T C A A C G T A C G T A C G T
A T G C C T A G G A C T C G T A T G A C C G T A T G C A A C G T T G C A T A G C T A C G C T G A C T G A C G T A A G C T T C G A T C G A

PB0021.1_Gata3_1/Jaspar

Match Rank:10
Score:0.60
Offset:-7
Orientation:forward strand
Alignment:-------AGACGAGA-------
TTTTTAGAGATAAGAAATAAAG
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A C T A G G T C A A G T C A C T G C G T A T C A G G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A G T G C A T C A G T C G A T C T G A C A T G G C T A A C T G C G T A C G A T G C T A C G T A T A C G T G C A C T G A G C T A A C G T C G T A G T C A T C G A C A T G