Information for 6-RATGAYNAGM (Motif 10)

C T G A C T G A A C G T A C T G C G T A A G T C T A C G C G T A C T A G G T A C
Reverse Opposite:
A C T G G A T C C G A T A T G C C T A G G C A T G T A C C G T A A G C T A G C T
p-value:1e-4
log p-value:-1.088e+01
Information Content per bp:1.638
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif36.36%
Number of Background Sequences with motif1324.5
Percentage of Background Sequences with motif1.58%
Average Position of motif in Targets129.5 +/- 64.0bp
Average Position of motif in Background98.3 +/- 85.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0108.1_Atf1_2/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-RATGAYNAGM---
GAATGACGAATAAC
A C G T C T G A C T G A A C G T A C T G C G T A A G T C T A C G C G T A C T A G G T A C A C G T A C G T A C G T
T A C G C T G A T C G A A C G T C T A G C G T A A G T C C T A G G T C A C T G A A G C T C G T A C G T A G T A C

HOXA4/MA1496.1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--RATGAYNAGM
NTAATGAC----
A C G T A C G T C T G A C T G A A C G T A C T G C G T A A G T C T A C G C G T A C T A G G T A C
A G T C A G C T T C G A G T C A A G C T A C T G C T G A A G T C A C G T A C G T A C G T A C G T

POL002.1_INR/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---RATGAYNAGM
NNNANTGA-----
A C G T A C G T A C G T C T G A C T G A A C G T A C T G C G T A A G T C T A C G C G T A C T A G G T A C
T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A A C G T A C G T A C G T A C G T A C G T

HOXB4/MA1499.1/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--RATGAYNAGM
NTAATGAT----
A C G T A C G T C T G A C T G A A C G T A C T G C G T A A G T C T A C G C G T A C T A G G T A C
A G T C A G C T G T C A C G T A A G C T A C T G C T G A A G C T A C G T A C G T A C G T A C G T

NKX6-3/MA1530.1/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---RATGAYNAGM
TTTAATGAN----
A C G T A C G T A C G T C T G A C T G A A C G T A C T G C G T A A G T C T A C G C G T A C T A G G T A C
C G A T C G A T A G C T C T G A C G T A A C G T T C A G C T G A A T C G A C G T A C G T A C G T A C G T

HOXC4/MA1504.1/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--RATGAYNAGM
NTAATGAN----
A C G T A C G T C T G A C T G A A C G T A C T G C G T A A G T C T A C G C G T A C T A G G T A C
A G C T A G C T C G T A C G T A A G C T A C T G C T G A A G T C A C G T A C G T A C G T A C G T

NR1H4/MA1110.1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--RATGAYNAGM
TCAATGACCTA-
A C G T A C G T C T G A C T G A A C G T A C T G C G T A A G T C T A C G C G T A C T A G G T A C
A C G T A G T C C G T A C T G A A G C T C T A G G T C A G T A C G T A C A G C T G C T A A C G T

HOXD4/MA1507.1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--RATGAYNAGM
NTAATGAN----
A C G T A C G T C T G A C T G A A C G T A C T G C G T A A G T C T A C G C G T A C T A G G T A C
G A T C A G C T C G T A C G T A A G C T A C T G C T G A A G C T A C G T A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---RATGAYNAGM
GTTAATGGCC---
A C G T A C G T A C G T C T G A C T G A A C G T A C T G C G T A A G T C T A C G C G T A C T A G G T A C
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T A C G T

FOSL1::JUND(var.2)/MA1143.1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:RATGAYNAGM-
-ATGACGTAAC
C T G A C T G A A C G T A C T G C G T A A G T C T A C G C G T A C T A G G T A C A C G T
A C G T T C G A A G C T A T C G G T C A A G T C C A T G G A C T T G C A C G T A G A T C