Information for 2-CCCTCAACAAGA (Motif 2)

A G T C A G T C A G T C C G A T A G T C G T C A C T G A A G T C C G T A C G T A C T A G C G T A
Reverse Opposite:
A C G T A G T C A C G T A C G T C T A G A G C T A C G T A C T G C G T A A C T G A C T G C T A G
p-value:1e-8
log p-value:-2.064e+01
Information Content per bp:1.832
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif40.00%
Number of Background Sequences with motif126.0
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets77.2 +/- 52.5bp
Average Position of motif in Background108.5 +/- 64.6bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0122.1_Foxk1_2/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCCTCAACAAGA---
CAAACAACAACACCT
A G T C A G T C A G T C C G A T A G T C G T C A C T G A A G T C C G T A C G T A C T A G C G T A A C G T A C G T A C G T
G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T

HOXD13/MA0909.2/Jaspar

Match Rank:2
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CCCTCAACAAGA-
--CCCAATAAAAC
A G T C A G T C A G T C C G A T A G T C G T C A C T G A A G T C C G T A C G T A C T A G C G T A A C G T
A C G T A C G T T A G C T A G C A G T C G T C A C T G A C G A T C G T A C T G A G T C A T G C A T G A C

HOXA13/MA0650.2/Jaspar

Match Rank:3
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CCCTCAACAAGA-
--CCCAATAAAAC
A G T C A G T C A G T C C G A T A G T C G T C A C T G A A G T C C G T A C G T A C T A G C G T A A C G T
A C G T A C G T T G A C T A G C A G T C G T C A C G T A A C G T C T G A C T G A C G T A G T C A G T A C

PH0078.1_Hoxd13/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCCTCAACAAGA----
CTACCAATAAAATTCT
A G T C A G T C A G T C C G A T A G T C G T C A C T G A A G T C C G T A C G T A C T A G C G T A A C G T A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

ZNF282/MA1154.1/Jaspar

Match Rank:5
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CCCTCAACAAGA-
CTTTCCCACAACACGAC
A C G T A C G T A C G T A C G T A G T C A G T C A G T C C G A T A G T C G T C A C T G A A G T C C G T A C G T A C T A G C G T A A C G T
A T G C G C A T C G A T C A G T A T G C A G T C A T G C G T C A G A T C C G T A C G T A A T G C G T C A A G T C C A T G C T G A A T G C

HOXB13/MA0901.2/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CCCTCAACAAGA---
-AACCAATAAAATTT
A G T C A G T C A G T C C G A T A G T C G T C A C T G A A G T C C G T A C G T A C T A G C G T A A C G T A C G T A C G T
A C G T C G T A C G T A G T A C G A T C G C T A C G T A A C G T C G T A G C T A G C T A G C T A G C A T G C A T G C A T

PB0205.1_Zic1_2/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CCCTCAACAAGA--
CCACACAGCAGGAGA
A C G T A G T C A G T C A G T C C G A T A G T C G T C A C T G A A G T C C G T A C G T A C T A G C G T A A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

RUNX3/MA0684.2/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CCCTCAACAAGA
AAAACCTCAAAT---
A C G T A C G T A C G T A G T C A G T C A G T C C G A T A G T C G T C A C T G A A G T C C G T A C G T A C T A G C G T A
C G T A G C T A T C G A C T G A G A T C T G A C C G A T T G A C G C T A C T G A G C T A G A C T A C G T A C G T A C G T

PB0120.1_Foxj1_2/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CCCTCAACAAGA-
ATGTCACAACAACAC
A C G T A C G T A G T C A G T C A G T C C G A T A G T C G T C A C T G A A G T C C G T A C G T A C T A G C G T A A C G T
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CCCTCAACAAGA--
--CACAGCAGGGGG
A G T C A G T C A G T C C G A T A G T C G T C A C T G A A G T C C G T A C G T A C T A G C G T A A C G T A C G T
A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G