Information for 24-ATGGTCATAAAG (Motif 25)

C G T A A C G T A C T G A C T G A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A C G T C G T A A C G T A C T G C G T A A G T C A G T C C G T A A C G T
p-value:1e-4
log p-value:-1.119e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets174.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0012.1_Cdx1/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-ATGGTCATAAAG---
TAAGGTAATAAAATTA
A C G T C G T A A C G T A C T G A C T G A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G A C G T A C G T A C G T
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

PH0065.1_Hoxc10/Jaspar

Match Rank:2
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-ATGGTCATAAAG---
TAAAGTCGTAAAACGT
A C G T C G T A A C G T A C T G A C T G A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G A C G T A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

PH0066.1_Hoxc11/Jaspar

Match Rank:3
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-ATGGTCATAAAG---
TAAAGTCGTAAAATAG
A C G T C G T A A C G T A C T G A C T G A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G A C G T A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

PH0013.1_Cdx2/Jaspar

Match Rank:4
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-ATGGTCATAAAG---
AAAGGTAATAAAATTT
A C G T C G T A A C G T A C T G A C T G A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

CDX4/MA1473.1/Jaspar

Match Rank:5
Score:0.70
Offset:2
Orientation:forward strand
Alignment:ATGGTCATAAAG-
--GGCAATAAAAC
C G T A A C G T A C T G A C T G A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G A C G T
A C G T A C G T C A T G T C A G A G T C T G C A C G T A A C G T C G T A C G T A G T C A G T C A A G T C

CDX1/MA0878.2/Jaspar

Match Rank:6
Score:0.70
Offset:2
Orientation:forward strand
Alignment:ATGGTCATAAAG-
--GGCCATAAAAC
C G T A A C G T A C T G A C T G A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G A C G T
A C G T A C G T C A T G C T A G A G T C T G A C C G T A A C G T C T G A C G T A C T G A G T C A A G T C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:7
Score:0.70
Offset:3
Orientation:forward strand
Alignment:ATGGTCATAAAG-
---GTCATAAAAN
C G T A A C G T A C T G A C T G A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G A C G T
A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

PH0047.1_Hoxa11/Jaspar

Match Rank:8
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-ATGGTCATAAAG---
TAAAGTCGTAAAACAT
A C G T C G T A A C G T A C T G A C T G A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G A C G T A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.70
Offset:2
Orientation:forward strand
Alignment:ATGGTCATAAAG--
--NGYCATAAAWCH
C G T A A C G T A C T G A C T G A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G A C G T A C G T
A C G T A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

HOXD10/MA1506.1/Jaspar

Match Rank:10
Score:0.70
Offset:2
Orientation:forward strand
Alignment:ATGGTCATAAAG-
--GGTCGTAAAAC
C G T A A C G T A C T G A C T G A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G A C G T
A C G T A C G T T C A G T C A G A G C T G T A C T C A G A C G T C G T A C G T A G T C A G C T A G A T C