Information for 3-CGCACCGTCT (Motif 10)

A G T C A C T G A G T C C G T A A G T C A G T C A C T G A C G T A G T C A C G T
Reverse Opposite:
C G T A A C T G C G T A A G T C A C T G A C T G A C G T A C T G A G T C A C T G
p-value:1e-3
log p-value:-9.025e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets121.0 +/- 0.0bp
Average Position of motif in Background45.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CGCACCGTCT--
----CTGTCTGG
A G T C A C T G A G T C C G T A A G T C A G T C A C T G A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CGCACCGTCT--
--VBSYGTCTGG
A G T C A C T G A G T C C G T A A G T C A G T C A C T G A C G T A G T C A C G T A C G T A C G T
A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

POL013.1_MED-1/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CGCACCGTCT
-GCTCCG---
A G T C A C T G A G T C C G T A A G T C A G T C A C T G A C G T A G T C A C G T
A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T

ZBTB14/MA1650.1/Jaspar

Match Rank:4
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CGCACCGTCT
CCCCGCGCACCC---
A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C C G T A A G T C A G T C A C T G A C G T A G T C A C G T
T A G C A T G C T A G C A T G C T A C G A T G C T A C G T A G C T G C A A T G C T A G C A T G C A C G T A C G T A C G T

PB0009.1_E2F3_1/Jaspar

Match Rank:5
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CGCACCGTCT-
ANCGCGCGCCCTTNN
A C G T A C G T A C G T A C G T A G T C A C T G A G T C C G T A A G T C A G T C A C T G A C G T A G T C A C G T A C G T
C G T A C G A T T A G C C T A G T A G C A T C G A T G C A C T G A G T C A T G C G A T C C G A T G C A T C G T A A G C T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CGCACCGTCT-
SNGCACCTGCHS
A C G T A G T C A C T G A G T C C G T A A G T C A G T C A C T G A C G T A G T C A C G T A C G T
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C

TCF3/MA0522.3/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CGCACCGTCT-
CGCACCTGCCC
A G T C A C T G A G T C C G T A A G T C A G T C A C T G A C G T A G T C A C G T A C G T
T A G C T A C G A T G C T C G A A T G C T A G C A G C T T C A G A G T C T A G C A T G C

NEUROD1/MA1109.1/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CGCACCGTCT----
-NNNCCATCTGTNN
A G T C A C T G A G T C C G T A A G T C A G T C A C T G A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A T G C A G C T T C A G T G A C G T A C C G T A A C G T T G A C G C A T A C T G A G C T A G T C G T A C

TCF12(var.2)/MA1648.1/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CGCACCGTCT-
CGCACCTGCCG
A G T C A C T G A G T C C G T A A G T C A G T C A C T G A C G T A G T C A C G T A C G T
T A G C T A C G A G T C T C G A A T G C T A G C A G C T T C A G A G T C A G T C A T C G

ASCL1(var.2)/MA1631.1/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CGCACCGTCT--
CAGCACCTGCCCC
A C G T A G T C A C T G A G T C C G T A A G T C A G T C A C T G A C G T A G T C A C G T A C G T A C G T
A T G C C G T A T A C G A T G C C T G A A T G C T A G C A G C T T A C G A T G C G A T C A T G C A T G C