Information for 4-AAGCGTGACA (Motif 12)

C G T A C G T A A C T G A G T C A C T G A C G T A C T G C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T A G T C C G T A A G T C A C T G A G T C A C G T A C G T
p-value:1e-3
log p-value:-8.089e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif6.25%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets126.0 +/- 0.0bp
Average Position of motif in Background194.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5/MA0014.3/Jaspar

Match Rank:1
Score:0.81
Offset:0
Orientation:forward strand
Alignment:AAGCGTGACA--
GAGCGTGACCCC
C G T A C G T A A C T G A G T C A C T G A C G T A C T G C G T A A G T C C G T A A C G T A C G T
T C A G C T G A T A C G A G T C T C A G G C A T T A C G C T G A T A G C A G T C G T A C A G T C

Pax2/MA0067.1/Jaspar

Match Rank:2
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:AAGCGTGACA
--NCGTGACN
C G T A C G T A A C T G A G T C A C T G A C G T A C T G C G T A A G T C C G T A
A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T

PAX1/MA0779.1/Jaspar

Match Rank:3
Score:0.73
Offset:-7
Orientation:reverse strand
Alignment:-------AAGCGTGACA
NGCANTCATGCGTGACG
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A G T C A C T G A C G T A C T G C G T A A G T C C G T A
C A G T A C T G G T A C C T G A A T C G A G C T T A G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A G T A C T A C G

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----AAGCGTGACA
TCAGNGAGCGTGAC-
A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A G T C A C T G A C G T A C T G C G T A A G T C C G T A
A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C A C G T

PAX9/MA0781.1/Jaspar

Match Rank:5
Score:0.71
Offset:-7
Orientation:reverse strand
Alignment:-------AAGCGTGACA
TGCAGTCATGCGTGACG
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A G T C A C T G A C G T A C T G C G T A A G T C C G T A
C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------AAGCGTGACA
GCAGCCAAGCGTGACN
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A G T C A C T G A C G T A C T G C G T A A G T C C G T A
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

MEIS3/MA0775.1/Jaspar

Match Rank:7
Score:0.67
Offset:4
Orientation:forward strand
Alignment:AAGCGTGACA--
----TTGACAGG
C G T A C G T A A C T G A G T C A C T G A C G T A C T G C G T A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:8
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AAGCGTGACA
-TGCGTG---
C G T A C G T A A C T G A G T C A C T G A C G T A C T G C G T A A G T C C G T A
A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:9
Score:0.67
Offset:4
Orientation:forward strand
Alignment:AAGCGTGACA-
----TTGACAG
C G T A C G T A A C T G A G T C A C T G A C G T A C T G C G T A A G T C C G T A A C G T
A C G T A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G

PAX3(var.2)/MA1546.1/Jaspar

Match Rank:10
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----AAGCGTGACA-
NTAATNAGCGTGACGN
A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A G T C A C T G A C G T A C T G C G T A A G T C C G T A A C G T
A G C T G C A T C T G A C G T A A G C T C G A T C T G A T A C G A G T C C T A G A G C T T C A G C G T A T G A C T A C G T C A G