Information for 4-AGTTAGTA (Motif 27)

C T G A A C T G A C G T A C G T C G T A A C T G C G A T C G T A
Reverse Opposite:
A C G T C G T A G T A C A C G T C G T A C G T A A G T C A G C T
p-value:1e-5
log p-value:-1.324e+01
Information Content per bp:1.909
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif3.15%
Number of Background Sequences with motif575.7
Percentage of Background Sequences with motif1.22%
Average Position of motif in Targets98.2 +/- 57.9bp
Average Position of motif in Background100.9 +/- 56.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HMBOX1/MA0895.1/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AGTTAGTA
ACTAGTTAAC-
A C G T A C G T A C G T C T G A A C T G A C G T A C G T C G T A A C T G C G A T C G T A
T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C A C G T

PH0040.1_Hmbox1/Jaspar

Match Rank:2
Score:0.63
Offset:-7
Orientation:forward strand
Alignment:-------AGTTAGTA--
GAAAACTAGTTAACATC
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C G T A C G T C G T A A C T G C G A T C G T A A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

PB0149.1_Myb_2/Jaspar

Match Rank:3
Score:0.63
Offset:-7
Orientation:reverse strand
Alignment:-------AGTTAGTA-
NNNTGGCAGTTGGTNN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C G T A C G T C G T A A C T G C G A T C G T A A C G T
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G

TLX2/MA1577.1/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGTTAGTA
CTAATTAG--
A C G T A C G T C T G A A C T G A C G T A C G T C G T A A C T G C G A T C G T A
A G T C G A C T C T G A C G T A A C G T A C G T C G T A T C A G A C G T A C G T

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:5
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----AGTTAGTA
TGGCAGTTGG--
A C G T A C G T A C G T A C G T C T G A A C T G A C G T A C G T C G T A A C T G C G A T C G T A
G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G A C G T A C G T

PB0150.1_Mybl1_2/Jaspar

Match Rank:6
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------AGTTAGTA-
CACGGCAGTTGGTNN
A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C G T A C G T C G T A A C T G C G A T C G T A A C G T
T G A C C G T A A G T C C A T G C T A G A G T C T C G A A C T G A C G T C A G T C T A G C T A G A C G T T A G C T A C G

PB0194.1_Zbtb12_2/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AGTTAGTA----
TATCATTAGAACGCT
A C G T A C G T A C G T C T G A A C T G A C G T A C G T C G T A A C T G C G A T C G T A A C G T A C G T A C G T A C G T
G C A T T G C A G A C T A T G C T C G A C G A T C A G T C T G A C A T G G C T A G T C A G T A C A C T G A G T C C G A T

ARGFX/MA1463.1/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---AGTTAGTA
TTTAATTAGN-
A C G T A C G T A C G T C T G A A C T G A C G T A C G T C G T A A C T G C G A T C G T A
C A G T G A C T G A C T C T G A C G T A A C G T C A G T C T G A C T A G G T C A A C G T

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:9
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----AGTTAGTA
BRRCVGTTDN--
A C G T A C G T A C G T A C G T C T G A A C T G A C G T A C G T C G T A A C T G C G A T C G T A
A G C T C T A G C T A G A G T C T G C A A C T G A C G T C G A T C G T A T C A G A C G T A C G T

PH0106.1_Msx1/Jaspar

Match Rank:10
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----AGTTAGTA---
NNATTAATTAGTNGNN
A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C G T A C G T C G T A A C T G C G A T C G T A A C G T A C G T A C G T
C A T G C G T A T G C A G A C T G A C T C G T A C G T A A C G T A C G T C T G A C T A G G A C T C G A T C A T G A G T C T G C A