Information for 1-GCAAGACATGCA (Motif 6)

A C T G A G T C C G T A C G T A A C T G C G T A A G T C C G T A A C G T A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C C G T A A C G T A C T G A C G T A G T C A C G T A C G T A C T G A G T C
p-value:1e-4
log p-value:-1.023e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets6.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4/MA1153.1/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCAAGACATGCA
TCTAGACA----
A C T G A G T C C G T A C G T A A C T G C G T A A G T C C G T A A C G T A C T G A G T C C G T A
A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GCAAGACATGCA-
CAAATCCAGACATCACA
A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A A C T G C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GCAAGACATGCA
AGGTGHCAGACA----
A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A A C T G C G T A A G T C C G T A A C G T A C T G A G T C C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T

PB0146.1_Mafk_2/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GCAAGACATGCA---
GAAAAAATTGCAAGG
A C T G A G T C C G T A C G T A A C T G C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GCAAGACATGCA
-CCAGACRSVB-
A C T G A G T C C G T A C G T A A C T G C G T A A G T C C G T A A C G T A C T G A G T C C G T A
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

POU5F1/MA1115.1/Jaspar

Match Rank:6
Score:0.55
Offset:5
Orientation:forward strand
Alignment:GCAAGACATGCA----
-----ATATGCAAATT
A C T G A G T C C G T A C G T A A C T G C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G C A T T C G A G A C T C T A G A G T C G C T A C T G A G C T A G C A T C A G T

PH0148.1_Pou3f3/Jaspar

Match Rank:7
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GCAAGACATGCA-------
--AAAATATGCATAATAAA
A C T G A G T C C G T A C G T A A C T G C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GCAAGACATGCA
-CCAGACAG---
A C T G A G T C C G T A C G T A A C T G C G T A A G T C C G T A A C G T A C T G A G T C C G T A
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:9
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:GCAAGACATGCA------
-----ATATGCAAATNNN
A C T G A G T C C G T A C G T A A C T G C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

MXI1/MA1108.2/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GCAAGACATGCA
--GACACATGGC
A C T G A G T C C G T A C G T A A C T G C G T A A G T C C G T A A C G T A C T G A G T C C G T A
A C G T A C G T C T A G T C G A G A T C C T G A A G T C C T G A A G C T C T A G A C T G A T G C