Information for 6-GCAACTAGAC (Motif 26)

A C T G A G T C C G T A C G T A A G T C A C G T C G T A A C T G C G T A A G T C
Reverse Opposite:
A C T G A C G T A G T C A C G T C G T A A C T G A C G T A C G T A C T G A G T C
p-value:1e-3
log p-value:-7.946e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets17.0 +/- 0.0bp
Average Position of motif in Background124.9 +/- 24.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4/MA1153.1/Jaspar

Match Rank:1
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:GCAACTAGAC-
---TCTAGACA
A C T G A G T C C G T A C G T A A G T C A C G T C G T A A C T G C G T A A G T C A C G T
A C G T A C G T A C G T A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A

SMAD3/MA0795.1/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCAACTAGAC-
-CGTCTAGACA
A C T G A G T C C G T A C G T A A G T C A C G T C G T A A C T G C G T A A G T C A C G T
A C G T G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCAACTAGAC--
GWAAYHTGAKMC
A C T G A G T C C G T A C G T A A G T C A C G T C G T A A C T G C G T A A G T C A C G T A C G T
C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCAACTAGAC------
CAAATCCAGACATCACA
A C G T A C T G A G T C C G T A C G T A A G T C A C G T C G T A A C T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

SMAD5/MA1557.1/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GCAACTAGAC-
-TGTCTAGACA
A C T G A G T C C G T A C G T A A G T C A C G T C G T A A C T G C G T A A G T C A C G T
A C G T G A C T T C A G C A G T T G A C A C G T T G C A T A C G G T C A G A T C G C T A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GCAACTAGAC--
----CCAGACAG
A C T G A G T C C G T A C G T A A G T C A C G T C G T A A C T G C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GCAACTAGAC----
----CCAGACRSVB
A C T G A G T C C G T A C G T A A G T C A C G T C G T A A C T G C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

DLX5/MA1476.1/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCAACTAGAC
GCAATTAC--
A C T G A G T C C G T A C G T A A G T C A C G T C G T A A C T G C G T A A G T C
T A C G G A T C T G C A C G T A A C G T A C G T C G T A A G T C A C G T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCAACTAGAC
BCMATTAG--
A C T G A G T C C G T A C G T A A G T C A C G T C G T A A C T G C G T A A G T C
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCAACTAGAC--
GWAAYHTGABMC
A C T G A G T C C G T A C G T A A G T C A C G T C G T A A C T G C G T A A G T C A C G T A C G T
A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C