Information for 21-CCATAGCAACCA (Motif 31)

A G T C A G T C C G T A A C G T C G T A A C T G A G T C C G T A C G T A A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C T G A C T G
p-value:1e-5
log p-value:-1.270e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.27%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets140.5 +/- 24.7bp
Average Position of motif in Background107.8 +/- 39.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RFX1/MA0509.2/Jaspar

Match Rank:1
Score:0.88
Offset:-2
Orientation:reverse strand
Alignment:--CCATAGCAACCA
TNCCATAGCAACNN
A C G T A C G T A G T C A G T C C G T A A C G T C G T A A C T G A G T C C G T A C G T A A G T C A G T C C G T A
G A C T C A T G A G T C G A T C G T C A G A C T T C G A C T A G G A T C C T G A T C G A G A T C G T C A T C A G

RFX3/MA0798.2/Jaspar

Match Rank:2
Score:0.87
Offset:-2
Orientation:reverse strand
Alignment:--CCATAGCAACCA
TNCCATAGCAACNN
A C G T A C G T A G T C A G T C C G T A A C G T C G T A A C T G A G T C C G T A C G T A A G T C A G T C C G T A
G A C T C A T G A G T C G A T C G T C A A G C T C T G A C T A G G A T C C T G A T C G A G A T C T G A C T C A G

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--CCATAGCAACCA-
TACCATAGCAACGGT
A C G T A C G T A G T C A G T C C G T A A C G T C G T A A C T G A G T C C G T A C G T A A G T C A G T C C G T A A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0054.1_Rfx3_1/Jaspar

Match Rank:4
Score:0.84
Offset:-6
Orientation:forward strand
Alignment:------CCATAGCAACCA-----
TGTGACCCTTAGCAACCGATTAA
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T C G T A A C T G A G T C C G T A C G T A A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:5
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--CCATAGCAACCA-
CCGCATAGCAACGGA
A C G T A C G T A G T C A G T C C G T A A C G T C G T A A C T G A G T C C G T A C G T A A G T C A G T C C G T A A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.78
Offset:0
Orientation:forward strand
Alignment:CCATAGCAACCA
SCCTAGCAACAG
A G T C A G T C C G T A A C G T C G T A A C T G A G T C C G T A C G T A A G T C A G T C C G T A
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---CCATAGCAACCA
TTGCCATGGCAACC-
A C G T A C G T A C G T A G T C A G T C C G T A A C G T C G T A A C T G A G T C C G T A C G T A A G T C A G T C C G T A
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---CCATAGCAACCA
TTGCCATGGCAACN-
A C G T A C G T A C G T A G T C A G T C C G T A A C G T C G T A A C T G A G T C C G T A C G T A A G T C A G T C C G T A
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T

RFX7/MA1554.1/Jaspar

Match Rank:9
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:CCATAGCAACCA
--NTAGCAACG-
A G T C A G T C C G T A A C G T C G T A A C T G A G T C C G T A C G T A A G T C A G T C C G T A
A C G T A C G T C T G A G A C T T C G A T A C G G A T C C T G A C T G A A T G C T A C G A C G T

RFX5/MA0510.2/Jaspar

Match Rank:10
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----CCATAGCAACCA
CGTTGCCATGGCAACG-
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T C G T A A C T G A G T C C G T A C G T A A G T C A G T C C G T A
A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G A C G T