Information for 17-AGGACACGTA (Motif 30)

C G T A A C T G A C T G C G T A A G T C C G T A A G T C A C T G A C G T C G T A
Reverse Opposite:
A C G T C G T A A G T C A C T G A C G T A C T G A C G T A G T C A G T C A C G T
p-value:1e-3
log p-value:-7.723e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif4.76%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets96.0 +/- 0.0bp
Average Position of motif in Background99.0 +/- 47.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:1
Score:0.69
Offset:3
Orientation:forward strand
Alignment:AGGACACGTA---
---GCACGTACCC
C G T A A C T G A C T G C G T A A G T C C G T A A G T C A C T G A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:2
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:AGGACACGTA-
---GCACGTAY
C G T A A C T G A C T G C G T A A G T C C G T A A G T C A C T G A C G T C G T A A C G T
A C G T A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:3
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:AGGACACGTA
--BGCACGTA
C G T A A C T G A C T G C G T A A G T C C G T A A G T C A C T G A C G T C G T A
A C G T A C G T A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AGGACACGTA
AAGGTCAC---
A C G T C G T A A C T G A C T G C G T A A G T C C G T A A G T C A C T G A C G T C G T A
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:5
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:AGGACACGTA-
---GCACGTNC
C G T A A C T G A C T G C G T A A G T C C G T A A G T C A C T G A C G T C G T A A C G T
A C G T A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C

HEY2/MA0649.1/Jaspar

Match Rank:6
Score:0.66
Offset:2
Orientation:forward strand
Alignment:AGGACACGTA--
--GACACGTGCC
C G T A A C T G A C T G C G T A A G T C C G T A A G T C A C T G A C G T C G T A A C G T A C G T
A C G T A C G T C T A G T C G A T G A C C T G A G T A C T A C G G A C T A T C G A G T C T A G C

HIF1A/MA1106.1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AGGACACGTA-
-NNGCACGTNC
C G T A A C T G A C T G C G T A A G T C C G T A A G T C A C T G A C G T C G T A A C G T
A C G T T A C G T A C G C A T G A G T C T C G A A G T C C T A G G A C T T C G A A T G C

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:8
Score:0.65
Offset:2
Orientation:forward strand
Alignment:AGGACACGTA
--GHCACGTG
C G T A A C T G A C T G C G T A A G T C C G T A A G T C A C T G A C G T C G T A
A C G T A C G T C T A G G C A T G A T C C G T A A G T C T C A G G A C T C T A G

Creb3l2/MA0608.1/Jaspar

Match Rank:9
Score:0.65
Offset:2
Orientation:forward strand
Alignment:AGGACACGTA-
--GCCACGTGT
C G T A A C T G A C T G C G T A A G T C C G T A A G T C A C T G A C G T C G T A A C G T
A C G T A C G T A C T G G T A C A T G C C G T A A G T C A C T G A C G T A T C G C A G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGGACACGTA
TRAGGTCA----
A C G T A C G T C G T A A C T G A C T G C G T A A G T C C G T A A G T C A C T G A C G T C G T A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T