Information for 19-CCTGCATACACC (Motif 29)

A G T C A G T C A C G T A T C G A G T C C G T A A C G T C G T A A G T C C G T A G T A C A G T C
Reverse Opposite:
A C T G A C T G A C G T A C T G A C G T C G T A A C G T A C T G A T G C C G T A A C T G A C T G
p-value:1e-3
log p-value:-8.541e+00
Information Content per bp:1.973
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.21%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets112.5 +/- 53.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)6.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CCTGCATACACC
-ATGMATATDC-
A G T C A G T C A C G T A T C G A G T C C G T A A C G T C G T A A G T C C G T A G T A C A G T C
A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T

GCM2/MA0767.1/Jaspar

Match Rank:2
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CCTGCATACACC
TACCCGCATN----
A C G T A C G T A G T C A G T C A C G T A T C G A G T C C G T A A C G T C G T A A G T C C G T A G T A C A G T C
G A C T C T G A A G T C G T A C G T A C T A C G A G T C T C G A A G C T T G C A A C G T A C G T A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCTGCATACACC---
AGCGGCACACACGCAA
A C G T A G T C A G T C A C G T A T C G A G T C C G T A A C G T C G T A A G T C C G T A G T A C A G T C A C G T A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:4
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CCTGCATACACC--
ATTTGCATACAATGG
A C G T A G T C A G T C A C G T A T C G A G T C C G T A A C G T C G T A A G T C C G T A G T A C A G T C A C G T A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

PB0158.1_Rfx3_2/Jaspar

Match Rank:5
Score:0.58
Offset:-7
Orientation:forward strand
Alignment:-------CCTGCATACACC----
ACTGACCCTTGGTTACCACAAAG
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A T C G A G T C C G T A A C G T C G T A A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T
T G C A A G T C A C G T A T C G G C T A A T G C T A C G A T G C G C A T C G A T T C A G A C T G C G A T C A G T C G T A G A T C T G A C T C G A T G A C T C G A T C G A C G T A A T C G

PB0159.1_Rfx4_2/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CCTGCATACACC
TACCCTAGTTACCGA
A C G T A C G T A C G T A G T C A G T C A C G T A T C G A G T C C G T A A C G T C G T A A G T C C G T A G T A C A G T C
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

PB0024.1_Gcm1_1/Jaspar

Match Rank:7
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CCTGCATACACC
TCGTACCCGCATCATT-
A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A T C G A G T C C G T A A C G T C G T A A G T C C G T A G T A C A G T C
G C A T T G A C T C A G C G A T T C G A G T A C G T A C G T A C A T C G A G T C C G T A A G C T T A G C C G T A G A C T C A G T A C G T

GCM1/MA0646.1/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCATACACC
GTACCCGCATN----
A C G T A C G T A C G T A G T C A G T C A C G T A T C G A G T C C G T A A C G T C G T A A G T C C G T A G T A C A G T C
T A C G A G C T T C G A T A G C T G A C G T A C C A T G A G T C C G T A A G C T T C A G A C G T A C G T A C G T A C G T

ZSCAN29/MA1602.1/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CCTGCATACACC
NCNGTGTAGACG
A G T C A G T C A C G T A T C G A G T C C G T A A C G T C G T A A G T C C G T A G T A C A G T C
A T G C G A T C A G T C T A C G A G C T C T A G C A G T C T G A A C T G T C G A A G T C T C A G

TCF12(var.2)/MA1648.1/Jaspar

Match Rank:10
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----CCTGCATACACC
CGCACCTGCCG-----
A C G T A C G T A C G T A C G T A G T C A G T C A C G T A T C G A G T C C G T A A C G T C G T A A G T C C G T A G T A C A G T C
T A G C T A C G A G T C T C G A A T G C T A G C A G C T T C A G A G T C A G T C A T C G A C G T A C G T A C G T A C G T A C G T