Information for 18-TGTTATGCAGAA (Motif 20)

A C G T A C T G A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C T G C G T A C G T A
Reverse Opposite:
A C G T A C G T A G T C A C G T A C T G A G T C C G T A A C G T C G T A C G T A A G T C C G T A
p-value:1e-3
log p-value:-9.045e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.0 +/- 0.0bp
Average Position of motif in Background99.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---TGTTATGCAGAA
CTTTGTTATGCAAAT
A C G T A C G T A C G T A C G T A C T G A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C T G C G T A C G T A
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

PH0148.1_Pou3f3/Jaspar

Match Rank:2
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--TGTTATGCAGAA---
TNNATTATGCATANNTT
A C G T A C G T A C G T A C T G A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C T G C G T A C G T A A C G T A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TGTTATGCAGAA
CATTGTTATGCAAAT
A C G T A C G T A C G T A C G T A C T G A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C T G C G T A C G T A
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

HLF/MA0043.3/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TGTTATGCAGAA-
TTGTTATGCAACAA
A C G T A C G T A C T G A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C T G C G T A C G T A A C G T
C G A T C A G T T C A G G C A T C A G T C T G A A G C T C T A G G A T C G T C A C T G A A G T C G T C A C G T A

POU5F1/MA1115.1/Jaspar

Match Rank:5
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TGTTATGCAGAA-
--ATATGCAAATT
A C G T A C T G A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C T G C G T A C G T A A C G T
A C G T A C G T C G T A G C A T T C G A G A C T C T A G A G T C G C T A C T G A G C T A G C A T C A G T

NFIL3/MA0025.2/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TGTTATGCAGAA-
TATTATGCAATAT
A C G T A C T G A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C T G C G T A C G T A A C G T
C G A T T C G A G C A T C A G T C T G A G A C T C T A G G A T C G T C A C G T A A G C T G T C A G C A T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TGTTATGCAGAA
--TTATGCAAAT
A C G T A C T G A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C T G C G T A C G T A
A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer

Match Rank:8
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TGTTATGCAGAA-
---TATGCAAATC
A C G T A C T G A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C T G C G T A C G T A A C G T
A C G T A C G T A C G T G A C T C G T A C A G T A C T G A G T C C G T A C G T A C G T A C A G T T G A C

PB0121.1_Foxj3_2/Jaspar

Match Rank:9
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TGTTATGCAGAA
NNCTTTGTTTTGNTNNN
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C T G C G T A C G T A
G C A T A T G C G T A C C G A T G C A T C G A T C T A G C G A T C A G T C G A T A C G T C T A G C A T G G A C T T A C G G C A T A C G T

POU2F3/MA0627.2/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TGTTATGCAGAA--
-AATATGCAAATAA
A C G T A C T G A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C T G C G T A C G T A A C G T A C G T
A C G T G C T A C G T A G C A T C G T A C A G T C A T G A G T C C G T A C G T A C G T A C G A T C G T A G C T A