Information for 1-YCCCTRCTGC (Motif 7)

G A C T A T G C T A G C G A T C A C G T T C G A G T A C C G A T A T C G A G T C
Reverse Opposite:
T C A G T A G C C G T A C A T G A G C T T G C A C T A G A T C G T A C G C T G A
p-value:1e-11
log p-value:-2.602e+01
Information Content per bp:1.646
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif2.60%
Number of Background Sequences with motif232.7
Percentage of Background Sequences with motif0.49%
Average Position of motif in Targets105.9 +/- 54.9bp
Average Position of motif in Background103.7 +/- 56.5bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:YCCCTRCTGC-
NNCCTGCTGNG
G A C T A T G C T A G C G A T C A C G T T C G A G T A C C G A T A T C G A G T C A C G T
A G T C A T G C T G A C T A G C A G C T T C A G A T G C A C G T T C A G A G C T A T C G

Zic2/MA1629.1/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-YCCCTRCTGC---
CCCCCTGCTGTGNN
A C G T G A C T A T G C T A G C G A T C A C G T T C G A G T A C C G A T A T C G A G T C A C G T A C G T A C G T
A G T C A G T C G A T C T A G C G T A C G A C T T C A G A T G C C A G T A T C G C G A T A C T G G T C A A C T G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-YCCCTRCTGC-
CCCCCTGCTGTG
A C G T G A C T A T G C T A G C G A T C A C G T T C G A G T A C C G A T A T C G A G T C A C G T
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-YCCCTRCTGC----
TCNCCTGCTGNGNNN
A C G T G A C T A T G C T A G C G A T C A C G T T C G A G T A C C G A T A T C G A G T C A C G T A C G T A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-YCCCTRCTGC----
TNTCCTGCTGTGNNG
A C G T G A C T A T G C T A G C G A T C A C G T T C G A G T A C C G A T A T C G A G T C A C G T A C G T A C G T A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---YCCCTRCTGC--
GGCCYCCTGCTGDGH
A C G T A C G T A C G T G A C T A T G C T A G C G A T C A C G T T C G A G T A C C G A T A T C G A G T C A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

NHLH1/MA0048.2/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:YCCCTRCTGC-
-CGCAGCTGCG
G A C T A T G C T A G C G A T C A C G T T C G A G T A C C G A T A T C G A G T C A C G T
A C G T T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G

Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-YCCCTRCTGC-
CCYCCYGCTGDG
A C G T G A C T A T G C T A G C G A T C A C G T T C G A G T A C C G A T A T C G A G T C A C G T
A G T C A T G C G A T C A G T C G T A C G A C T C T A G A G T C C G A T A C T G C A G T A C T G

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.59
Offset:1
Orientation:forward strand
Alignment:YCCCTRCTGC-
-CNGTCCTCCC
G A C T A T G C T A G C G A T C A C G T T C G A G T A C C G A T A T C G A G T C A C G T
A C G T A T G C T C G A T A C G A C G T A T G C A G T C A C G T A G T C A G T C G A T C

GSC/MA0648.1/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:forward strand
Alignment:YCCCTRCTGC--
--GCTAATCCCC
G A C T A T G C T A G C G A T C A C G T T C G A G T A C C G A T A T C G A G T C A C G T A C G T
A C G T A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C