Information for 3-CGCCAATC (Motif 30)

A G T C A C T G A G T C A G T C C G T A C G T A A C G T A G T C
Reverse Opposite:
A C T G C G T A A C G T A C G T A C T G A C T G A G T C A C T G
p-value:1e-2
log p-value:-5.470e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif55.8
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets182.0 +/- 0.0bp
Average Position of motif in Background102.6 +/- 90.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFYC/MA1644.1/Jaspar

Match Rank:1
Score:0.80
Offset:0
Orientation:forward strand
Alignment:CGCCAATC---
AGCCAATCAGA
A G T C A C T G A G T C A G T C C G T A C G T A A C G T A G T C A C G T A C G T A C G T
T C G A C T A G A G T C G T A C G C T A T C G A G A C T T A G C T C G A T A C G T G C A

NFYA/MA0060.3/Jaspar

Match Rank:2
Score:0.79
Offset:0
Orientation:forward strand
Alignment:CGCCAATC---
AACCAATCAGA
A G T C A C T G A G T C A G T C C G T A C G T A A C G T A G T C A C G T A C G T A C G T
T C G A C T G A A G T C G A T C G C T A T C G A G A C T T A G C T C G A T A C G T G C A

NFY(CCAAT)/Promoter/Homer

Match Rank:3
Score:0.78
Offset:0
Orientation:forward strand
Alignment:CGCCAATC--
AGCCAATCGG
A G T C A C T G A G T C A G T C C G T A C G T A A C G T A G T C A C G T A C G T
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---CGCCAATC-
ACTAGCCAATCA
A C G T A C G T A C G T A G T C A C T G A G T C A G T C C G T A C G T A A C G T A G T C A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--CGCCAATC
CGTGCCAAG-
A C G T A C G T A G T C A C T G A G T C A G T C C G T A C G T A A C G T A G T C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:6
Score:0.72
Offset:-7
Orientation:forward strand
Alignment:-------CGCCAATC--
TACGCCCCGCCACTCTG
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C A G T C C G T A C G T A A C G T A G T C A C G T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

Dux/MA0611.1/Jaspar

Match Rank:7
Score:0.72
Offset:2
Orientation:forward strand
Alignment:CGCCAATC--
--CCAATCAA
A G T C A C T G A G T C A G T C C G T A C G T A A C G T A G T C A C G T A C G T
A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

NFYB/MA0502.2/Jaspar

Match Rank:8
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--CGCCAATC--
NTGGCCAATGAG
A C G T A C G T A G T C A C T G A G T C A G T C C G T A C G T A A C G T A G T C A C G T A C G T
A G T C A C G T C T A G T C A G G A T C G T A C G T C A T C G A C G A T T A C G T C G A T A C G

PB0112.1_E2F2_2/Jaspar

Match Rank:9
Score:0.70
Offset:-7
Orientation:forward strand
Alignment:-------CGCCAATC--
CCTTCGGCGCCAAAAGG
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C A G T C C G T A C G T A A C G T A G T C A C G T A C G T
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

PB0113.1_E2F3_2/Jaspar

Match Rank:10
Score:0.68
Offset:-7
Orientation:forward strand
Alignment:-------CGCCAATC--
AGCTCGGCGCCAAAAGC
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C A G T C C G T A C G T A A C G T A G T C A C G T A C G T
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C