Information for 3-TAGCACGA (Motif 37)

A C G T C G T A A C T G A G T C C G T A A G T C A C T G C G T A
Reverse Opposite:
A C G T A G T C A C T G A C G T A C T G A G T C A C G T C G T A
p-value:1e-2
log p-value:-5.478e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif63.9
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets139.0 +/- 0.0bp
Average Position of motif in Background98.0 +/- 111.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer

Match Rank:1
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-TAGCACGA---
NHRTCACGACDN
A C G T A C G T C G T A A C T G A G T C C G T A A G T C A C T G C G T A A C G T A C G T A C G T
T C A G G C T A T C A G C A G T T G A C G T C A A G T C A T C G T G C A G T A C C A G T G A T C

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TAGCACGA--
--GCACGTAY
A C G T C G T A A C T G A G T C C G T A A G T C A C T G C G T A A C G T A C G T
A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TAGCACGA--
--GCACGTNC
A C G T C G T A A C T G A G T C C G T A A G T C A C T G C G T A A C G T A C G T
A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TAGCACGA--
TBGCACGCAA
A C G T C G T A A C T G A G T C C G T A A G T C A C T G C G T A A C G T A C G T
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

HIF1A/MA1106.1/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TAGCACGA--
NNGCACGTNC
A C G T C G T A A C T G A G T C C G T A A G T C A C T G C G T A A C G T A C G T
T A C G T A C G C A T G A G T C T C G A A G T C C T A G G A C T T C G A A T G C

CEBPD/MA0836.2/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TAGCACGA---
TATTGCACAATAT
A C G T A C G T A C G T C G T A A C T G A G T C C G T A A G T C A C T G C G T A A C G T A C G T A C G T
C A G T T C G A G A C T C A G T C A T G G A T C C T G A G A T C G T C A C T G A A G C T G C T A G C A T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:7
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TAGCACGA-
-BGCACGTA
A C G T C G T A A C T G A G T C C G T A A G T C A C T G C G T A A C G T
A C G T A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:8
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TAGCACGA----
--GCACGTACCC
A C G T C G T A A C T G A G T C C G T A A G T C A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

CEBPA/MA0102.4/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TAGCACGA---
TTATTGCACAATAT
A C G T A C G T A C G T A C G T C G T A A C T G A G T C C G T A A G T C A C T G C G T A A C G T A C G T A C G T
C G A T C A G T T C G A G C A T C A G T C A T G G A T C C T G A G A T C G T C A C G T A A G C T G C T A G C A T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:10
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TAGCACGA-
---CACGCA
A C G T C G T A A C T G A G T C C G T A A G T C A C T G C G T A A C G T
A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A