Information for 3-CAGCAGTGGT (Motif 5)

A G T C C G T A A C T G G T A C C G T A A T C G A C G T T A C G A C T G A C G T
Reverse Opposite:
C G T A A G T C A T G C G T C A A T G C C G A T A C T G T G A C A C G T A C T G
p-value:1e-9
log p-value:-2.111e+01
Information Content per bp:1.846
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.63%
Number of Background Sequences with motif101.9
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets95.9 +/- 61.0bp
Average Position of motif in Background93.0 +/- 59.1bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CAGCAGTGGT
CACAGCAGGGG-
A C G T A C G T A G T C C G T A A C T G G T A C C G T A A T C G A C G T T A C G A C T G A C G T
T A G C T C G A A G T C T G C A T A C G A G T C T C G A A T C G A C T G T A C G T C A G A C G T

Ptf1a(var.2)/MA1619.1/Jaspar

Match Rank:2
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGTGGT
NNACAGCTGTNN-
A C G T A C G T A C G T A G T C C G T A A C T G G T A C C G T A A T C G A C G T T A C G A C T G A C G T
T C A G T G A C T C G A G T A C T C G A A T C G T A G C A G C T A C T G A G C T A C T G A G T C A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CAGCAGTGGT
NCAGCTGCTG-
A C G T A G T C C G T A A C T G G T A C C G T A A T C G A C G T T A C G A C T G A C G T
T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G A C G T

MYF5/MA1641.1/Jaspar

Match Rank:4
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGTGGT
NNACAGCTGTNN-
A C G T A C G T A C G T A G T C C G T A A C T G G T A C C G T A A T C G A C G T T A C G A C T G A C G T
T A C G T C G A T C G A T A G C C G T A A T C G T A G C G C A T A T C G A G C T A G C T A T G C A C G T

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CAGCAGTGGT
CAGCTGTT--
A G T C C G T A A C T G G T A C C G T A A T C G A C G T T A C G A C T G A C G T
A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T A C G T A C G T

Tcf12/MA0521.1/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGTGGT
NNGCAGCTGTT--
A C G T A C G T A C G T A G T C C G T A A C T G G T A C C G T A A T C G A C G T T A C G A C T G A C G T
A T G C G C A T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CAGCAGTGGT--
--GCTGTGGTTT
A G T C C G T A A C T G G T A C C G T A A T C G A C G T T A C G A C T G A C G T A C G T A C G T
A C G T A C G T A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CAGCAGTGGT
CACAGCAGGGGG
A C G T A C G T A G T C C G T A A C T G G T A C C G T A A T C G A C G T T A C G A C T G A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:9
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CAGCAGTGGT
AGCAGCTGCTNN
A C G T A C G T A G T C C G T A A C T G G T A C C G T A A T C G A C G T T A C G A C T G A C G T
C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C

Zic2/MA1629.1/Jaspar

Match Rank:10
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CAGCAGTGGT
CTCACAGCAGGGGG
A C G T A C G T A C G T A C G T A G T C C G T A A C T G G T A C C G T A A T C G A C G T T A C G A C T G A C G T
T G A C C A G T T G A C G C T A T A G C G T C A T A C G A G T C C T G A C A T G A T C G C T A G T C A G T C A G