Information for 7-GCYCTCAATTTY (Motif 7)

A C T G A G T C A G T C A T G C A C G T G T A C C G T A C G T A C G A T A C G T A G C T A G C T
Reverse Opposite:
C T G A C T G A T G C A G C T A A C G T C G A T A C T G C G T A A T C G C T A G C T A G G T A C
p-value:1e-4
log p-value:-9.384e+00
Information Content per bp:1.709
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif36.36%
Number of Background Sequences with motif1727.2
Percentage of Background Sequences with motif2.32%
Average Position of motif in Targets127.0 +/- 46.5bp
Average Position of motif in Background101.2 +/- 71.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0169.1_Tgif1/Jaspar

Match Rank:1
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----GCYCTCAATTTY
NNNCAGCTGTCAATATN
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A T G C A C G T G T A C C G T A C G T A C G A T A C G T A G C T A G C T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GCYCTCAATTTY
AGCCACTCAAG---
A C G T A C G T A C T G A G T C A G T C A T G C A C G T G T A C C G T A C G T A C G A T A C G T A G C T A G C T
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T

NKX2-5/MA0063.2/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCYCTCAATTTY
ACCACTCAAAA--
A C G T A C T G A G T C A G T C A T G C A C G T G T A C C G T A C G T A C G A T A C G T A G C T A G C T
T C G A T G A C G A T C C T G A G A T C G C A T G A T C C G T A G C T A T C G A G C T A A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCYCTCAATTTY
NSCACTYVAV---
A C G T A C T G A G T C A G T C A T G C A C G T G T A C C G T A C G T A C G A T A C G T A G C T A G C T
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GCYCTCAATTTY
AASCACTCAA----
A C G T A C G T A C T G A G T C A G T C A T G C A C G T G T A C C G T A C G T A C G A T A C G T A G C T A G C T
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T A C G T

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCYCTCAATTTY
VGCCATAAAA---
A C G T A C T G A G T C A G T C A T G C A C G T G T A C C G T A C G T A C G A T A C G T A G C T A G C T
T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCYCTCAATTTY
GCTGTCAA----
A C T G A G T C A G T C A T G C A C G T G T A C C G T A C G T A C G A T A C G T A G C T A G C T
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T

PH0170.1_Tgif2/Jaspar

Match Rank:8
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GCYCTCAATTTY
AACTAGCTGTCAATAC-
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A T G C A C G T G T A C C G T A C G T A C G A T A C G T A G C T A G C T
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:9
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GCYCTCAATTTY
AAGCACCTGTCAATAT-
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A T G C A C G T G T A C C G T A C G T A C G A T A C G T A G C T A G C T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T A C G T

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCYCTCAATTTY
KGCCATAAAA---
A C G T A C T G A G T C A G T C A T G C A C G T G T A C C G T A C G T A C G A T A C G T A G C T A G C T
C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A A C G T A C G T A C G T