Information for 21-GTCTAGCACT (Motif 35)

A C T G A C G T A G T C A C G T C G T A A C T G A G T C C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G A C G T A C T G A G T C A C G T C G T A A C T G C G T A A G T C
p-value:1e-2
log p-value:-6.783e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif12.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets67.0 +/- 0.0bp
Average Position of motif in Background62.7 +/- 60.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-GTCTAGCACT-
TGTCTGDCACCT
A C G T A C T G A C G T A G T C A C G T C G T A A C T G A G T C C G T A A G T C A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Smad4/MA1153.1/Jaspar

Match Rank:2
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GTCTAGCACT
TGTCTAGA---
A C G T A C T G A C G T A G T C A C G T C G T A A C T G A G T C C G T A A G T C A C G T
G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--GTCTAGCACT-
CTGTCTGTCACCT
A C G T A C G T A C T G A C G T A G T C A C G T C G T A A C T G A G T C C G T A A G T C A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GTCTAGCACT---
NGNTCTAGAACCNGV
A C G T A C G T A C T G A C G T A G T C A C G T C G T A A C T G A G T C C G T A A G T C A C G T A C G T A C G T A C G T
C T G A T C A G G C T A A G C T A G T C G A C T C T G A C T A G T G C A C T G A A G T C G T A C G A T C A C T G T C G A

PB0090.1_Zbtb12_1/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GTCTAGCACT----
NNGATCTAGAACCTNNN
A C G T A C G T A C G T A C T G A C G T A G T C A C G T C G T A A C T G A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T
T C A G A C G T C T A G C G T A A G C T A G T C A C G T C T G A A C T G G C T A C G T A A G T C T G A C A G C T C G A T G T C A T A C G

ZBTB12/MA1649.1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GTCTAGCACT-
ATCTGGAACCC
A C T G A C G T A G T C A C G T C G T A A C T G A G T C C G T A A G T C A C G T A C G T
T C G A A G C T T A G C A G C T T C A G C A T G T G C A C T G A G A T C G T A C A G T C

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:7
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GTCTAGCACT---
---AAGCACTTAA
A C T G A C G T A G T C A C G T C G T A A C T G A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GTCTAGCACT
CTGTCTGG----
A C G T A C G T A C T G A C G T A G T C A C G T C G T A A C T G A G T C C G T A A G T C A C G T
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:9
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GTCTAGCACT---
---MRSCACTYAA
A C T G A C G T A G T C A C G T C G T A A C T G A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GTCTAGCACT
VBSYGTCTGG----
A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T C G T A A C T G A G T C C G T A A G T C A C G T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T