Information for 3-MAGTCTSTWAKW (Motif 3)

G T A C C G T A A C T G A C G T A G T C A C G T A T C G A C G T C G A T C G T A A C G T G C A T
Reverse Opposite:
C G A T G T C A A C G T C G T A C G T A A T G C C G T A A C T G C G T A A G T C A C G T A C T G
p-value:1e-7
log p-value:-1.614e+01
Information Content per bp:1.839
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif27.27%
Number of Background Sequences with motif65.3
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets148.7 +/- 21.0bp
Average Position of motif in Background88.7 +/- 63.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:MAGTCTSTWAKW
AGGTCTCTAACC
G T A C C G T A A C T G A C G T A G T C A C G T A T C G A C G T C G A T C G T A A C G T G C A T
C T G A T C A G A C T G C A G T A G T C G A C T A G T C A C G T C G T A G C T A A T G C G A T C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:MAGTCTSTWAKW
TWGTCTGV----
G T A C C G T A A C T G A C G T A G T C A C G T A T C G A C G T C G A T C G T A A C G T G C A T
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--MAGTCTSTWAKW
VBSYGTCTGG----
A C G T A C G T G T A C C G T A A C T G A C G T A G T C A C G T A T C G A C G T C G A T C G T A A C G T G C A T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:MAGTCTSTWAKW
CTGTCTGG----
G T A C C G T A A C T G A C G T A G T C A C G T A T C G A C G T C G A T C G T A A C G T G C A T
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T

MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:5
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:MAGTCTSTWAKW-----
--GACTTTTAWTTTGAA
G T A C C G T A A C T G A C G T A G T C A C G T A T C G A C G T C G A T C G T A A C G T G C A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G C T G A A G T C G A C T G A C T G A C T A C G T C T G A G C A T C A G T G A C T C G A T T C A G C T G A G T C A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:MAGTCTSTWAKW-
-TGTCTGDCACCT
G T A C C G T A A C T G A C G T A G T C A C G T A T C G A C G T C G A T C G T A A C G T G C A T A C G T
A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

PB0119.1_Foxa2_2/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:MAGTCTSTWAKW---
NCNTTTGTTATTTNN
G T A C C G T A A C T G A C G T A G T C A C G T A T C G A C G T C G A T C G T A A C G T G C A T A C G T A C G T A C G T
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----MAGTCTSTWAKW-
NNTNNTGTCTGGNNTNG
A C G T A C G T A C G T A C G T G T A C C G T A A C T G A C G T A G T C A C G T A T C G A C G T C G A T C G T A A C G T G C A T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:MAGTCTSTWAKW-
CTGTCTGTCACCT
G T A C C G T A A C T G A C G T A G T C A C G T A T C G A C G T C G A T C G T A A C G T G C A T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

PB0203.1_Zfp691_2/Jaspar

Match Rank:10
Score:0.55
Offset:-7
Orientation:reverse strand
Alignment:-------MAGTCTSTWAKW
NTNNNAGGAGTCTCNTN--
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C C G T A A C T G A C G T A G T C A C G T A T C G A C G T C G A T C G T A A C G T G C A T
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A A C G T A C G T