Information for 4-SAAWTSTWCYCW (Motif 5)

A T C G C G T A C G T A C G T A A G C T A T G C A C G T C G A T A G T C A G T C A G T C C G T A
Reverse Opposite:
C G A T A C T G C T A G A C T G C G T A C G T A A T C G C T G A C G A T A C G T A C G T T A G C
p-value:1e-6
log p-value:-1.521e+01
Information Content per bp:1.804
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif40.00%
Number of Background Sequences with motif458.8
Percentage of Background Sequences with motif0.59%
Average Position of motif in Targets127.8 +/- 43.9bp
Average Position of motif in Background105.8 +/- 74.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0173.1_Sox21_2/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---SAAWTSTWCYCW--
AATCAATTGTTCCGCTA
A C G T A C G T A C G T A T C G C G T A C G T A C G T A A G C T A T G C A C G T C G A T A G T C A G T C A G T C C G T A A C G T A C G T
T G A C T C A G A G C T A T G C G C T A C G T A A G C T C G A T A T C G C G A T A G C T A T G C T G A C A C T G G A T C C A G T T C G A

PB0072.1_Sox5_1/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---SAAWTSTWCYCW-
NNTTTATTGTTCTNNN
A C G T A C G T A C G T A T C G C G T A C G T A C G T A A G C T A T G C A C G T C G A T A G T C A G T C A G T C C G T A A C G T
G C T A C G A T G C A T G A C T G C A T C G T A G A C T G C A T C T A G G A C T A G C T G A T C G A C T G C T A C G T A G C T A

PB0067.1_Sox18_1/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--SAAWTSTWCYCW--
TTCAATTGTTCTAAAA
A C G T A C G T A T C G C G T A C G T A C G T A A G C T A T G C A C G T C G A T A G T C A G T C A G T C C G T A A C G T A C G T
A G C T G C A T A G T C G T C A C G T A C G A T C G A T T C A G C G A T G C A T A G T C G C A T G T C A C G T A G T C A G C T A

PB0065.1_Sox15_1/Jaspar

Match Rank:4
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----SAAWTSTWCYCW-
ANNTCTATTGTTCNNNA
A C G T A C G T A C G T A C G T A T C G C G T A C G T A C G T A A G C T A T G C A C G T C G A T A G T C A G T C A G T C C G T A A C G T
C G T A C G T A T C G A A G C T G A T C G C A T C G T A C G A T C G A T C T A G C G A T G A C T G T A C G C T A G T A C G A C T C G T A

PB0062.1_Sox12_1/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:SAAWTSTWCYCW--
TAATTGTTCTAAAC
A T C G C G T A C G T A C G T A A G C T A T G C A C G T C G A T A G T C A G T C A G T C C G T A A C G T A C G T
G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C

PB0063.1_Sox13_1/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---SAAWTSTWCYCW-
AANTTATTGTTCTNNA
A C G T A C G T A C G T A T C G C G T A C G T A C G T A A G C T A T G C A C G T C G A T A G T C A G T C A G T C C G T A A C G T
C G T A C G T A G C A T G C A T G C A T C G T A A G C T C G A T C T A G C G A T G A C T G T A C A G C T G C A T C T G A G C T A

ZNF140/MA1589.1/Jaspar

Match Rank:7
Score:0.60
Offset:-7
Orientation:reverse strand
Alignment:-------SAAWTSTWCYCW--
GACCCAGCAATTCCACTCCTA
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G C G T A C G T A C G T A A G C T A T G C A C G T C G A T A G T C A G T C A G T C C G T A A C G T A C G T
C T A G T C G A A G T C G A T C G A T C C G T A C T A G A G T C G C T A T C G A A G C T G C A T G T A C G A T C T C G A G A T C A G C T G A T C G T A C G A C T C G T A

PB0165.1_Sox11_2/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-SAAWTSTWCYCW-
AAAATTGTTATGAA
A C G T A T C G C G T A C G T A C G T A A G C T A T G C A C G T C G A T A G T C A G T C A G T C C G T A A C G T
C G T A C T G A C T G A C T G A A C G T G A C T T C A G C G A T G A C T G C T A C A G T T C A G C T G A C G T A

PB0074.1_Sox8_1/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----SAAWTSTWCYCW-
GTATCTATTGTTCTTTA
A C G T A C G T A C G T A C G T A T C G C G T A C G T A C G T A A G C T A T G C A C G T C G A T A G T C A G T C A G T C C G T A A C G T
C A G T C A G T C G T A C G A T A G C T G C A T C G T A G A C T C G A T T C A G C G A T G A C T G T A C G C A T C A G T C G A T C G T A

SOX8/MA0868.2/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:SAAWTSTWCYCW
CCATTGTTCT--
A T C G C G T A C G T A C G T A A G C T A T G C A C G T C G A T A G T C A G T C A G T C C G T A
A T G C G A T C C G T A C A G T C G A T T C A G C G A T G A C T G A T C A C G T A C G T A C G T