Information for 4-AGAATTTATTCC (Motif 4)

C G T A A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G A T A C G T A G T C A C G T
p-value:1e-15
log p-value:-3.679e+01
Information Content per bp:1.974
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets90.3 +/- 33.5bp
Average Position of motif in Background139.5 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.2/Jaspar

Match Rank:1
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:AGAATTTATTCC--
--NTTTTATTGCNN
C G T A A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C A C G T A C G T
A C G T A C G T C G A T G C A T C G A T G C A T G C A T T C G A G A C T C A G T C T A G G A T C G C A T G A C T

PH0013.1_Cdx2/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AGAATTTATTCC----
NAATTTTATTACCNNN
C G T A A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C A C G T A C G T A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:AGAATTTATTCC
--NTTTTATGAC
C G T A A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C
A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

HOXD9/MA0913.2/Jaspar

Match Rank:4
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:AGAATTTATTCC
--NTTTTATTGC
C G T A A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C
A C G T A C G T C T A G C A G T A C G T C G A T C G A T C G T A A G C T C A G T T C A G A G T C

CDX4/MA1473.1/Jaspar

Match Rank:5
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:AGAATTTATTCC-
--GTTTTATTGCC
C G T A A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C A C G T
A C G T A C G T T C A G C A G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G T C G T A C

PH0046.1_Hoxa10/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AGAATTTATTCC---
TNAATTTTATTACCTN
A C G T C G T A A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C A C G T A C G T A C G T
G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A

HOXA10/MA0899.1/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AGAATTTATTCC-
--NTTTTATTACN
C G T A A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C A C G T
A C G T A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

PH0124.1_Obox5_1/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AGAATTTATTCC-----
NANANTTAATCCCNNNN
C G T A A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T
C A T G C G T A C T G A C T G A C G A T G C A T C G A T C G T A C G T A C G A T G A T C A G T C A G T C A G C T A G T C G A C T C G T A

CDX1/MA0878.2/Jaspar

Match Rank:9
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AGAATTTATTCC-
--GTTTTATGGCC
C G T A A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C A C G T
A C G T A C G T T C A G C A G T A G C T A C G T A G C T C G T A A C G T A C T G T C A G G A T C G T A C

PH0012.1_Cdx1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGAATTTATTCC----
NAATTTTATTACCTNN
C G T A A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C A C G T A C G T A C G T A C G T
C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A