Information for 2-GGAATAGCAA (Motif 6)

A C T G A C T G C G T A T G C A A C G T C G T A A C T G A G T C C G T A G T C A
Reverse Opposite:
A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C G T A G T C A G T C
p-value:1e-6
log p-value:-1.422e+01
Information Content per bp:1.909
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif18.75%
Number of Background Sequences with motif48.1
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets122.8 +/- 41.8bp
Average Position of motif in Background90.8 +/- 68.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-GGAATAGCAA
TGGAACAGMA-
A C G T A C T G A C T G C G T A T G C A A C G T C G T A A C T G A G T C C G T A G T C A
C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:2
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GGAATAGCAA
GGATTAGC--
A C T G A C T G C G T A T G C A A C G T C G T A A C T G A G T C C G T A G T C A
T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:3
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GGAATAGCAA--
AGGGGGATTAGCTGCC
A C G T A C G T A C G T A C G T A C T G A C T G C G T A T G C A A C G T C G T A A C T G A G T C C G T A G T C A A C G T A C G T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C

ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GGAATAGCAA
GGAACAGCCG
A C T G A C T G C G T A T G C A A C G T C G T A A C T G A G T C C G T A G T C A
C T A G A C T G T G C A G T C A A T G C C G T A A T C G A T G C A G T C C T A G

OTX2/MA0712.2/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GGAATAGCAA
AAGGGATTAGAA-
A C G T A C G T A C G T A C T G A C T G C G T A T G C A A C G T C G T A A C T G A G T C C G T A G T C A
G C T A C G T A C T A G C T A G C T A G G T C A C A G T G C A T C G T A C T A G C G T A C G T A A C G T

PITX1/MA0682.2/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GGAATAGCAA
NGGATTAN---
A C G T A C T G A C T G C G T A T G C A A C G T C G T A A C T G A G T C C G T A G T C A
C A T G T C A G C A T G G T C A A C G T A C G T C G T A C T A G A C G T A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GGAATAGCAA
NNGGATTAGN--
A C G T A C G T A C T G A C T G C G T A T G C A A C G T C G T A A C T G A G T C C G T A G T C A
C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C A C G T A C G T

PH0035.1_Gsc/Jaspar

Match Rank:8
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----GGAATAGCAA--
NNAAGGGATTAACGANT
A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A T G C A A C G T C G T A A C T G A G T C C G T A G T C A A C G T A C G T
A C G T C G T A G T C A C T G A T A C G C T A G C T A G G T C A A C G T A G C T C G T A C T G A A G T C C A T G C G T A A G C T C G A T

PH0137.1_Pitx1/Jaspar

Match Rank:9
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------GGAATAGCAA-
TTAGAGGGATTAACAAT
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A T G C A A C G T C G T A A C T G A G T C C G T A G T C A A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

ZNF341/MA1655.1/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GGAATAGCAA-
GGGAACAGCCAC
A C G T A C T G A C T G C G T A T G C A A C G T C G T A A C T G A G T C C G T A G T C A A C G T
C A T G C T A G T A C G T G C A C T G A A T G C T C G A A T C G A T G C G T A C T C G A T A G C