Information for 3-GGCTAGGGAA (Motif 9)

C T A G C T A G A T G C G C A T C T G A A C T G A T C G T C A G C G T A G T C A
Reverse Opposite:
C A G T A C G T A G T C T A G C T G A C G A C T C G T A A T C G G A T C A G T C
p-value:1e-10
log p-value:-2.368e+01
Information Content per bp:1.710
Number of Target Sequences with motif77.0
Percentage of Target Sequences with motif8.45%
Number of Background Sequences with motif1774.1
Percentage of Background Sequences with motif3.72%
Average Position of motif in Targets98.4 +/- 47.3bp
Average Position of motif in Background100.3 +/- 55.1bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:1
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GGCTAGGGAA--
KGTTGCTAGGMAACA
A C G T A C G T A C G T C T A G C T A G A T G C G C A T C T G A A C T G A T C G T C A G C G T A G T C A A C G T A C G T
C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GGCTAGGGAA
WDNCTGGGCA-
A C G T C T A G C T A G A T G C G C A T C T G A A C T G A T C G T C A G C G T A G T C A
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:3
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GGCTAGGGAA--
--CSTGGGAAAD
C T A G C T A G A T G C G C A T C T G A A C T G A T C G T C A G C G T A G T C A A C G T A C G T
A C G T A C G T A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GGCTAGGGAA
AAGGCAAGTGT-
A C G T A C G T C T A G C T A G A T G C G C A T C T G A A C T G A T C G T C A G C G T A G T C A
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GGCTAGGGAA
GGCMATGAAA
C T A G C T A G A T G C G C A T C T G A A C T G A T C G T C A G C G T A G T C A
C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A

Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GGCTAGGGAA
GGYAATGAAA
C T A G C T A G A T G C G C A T C T G A A C T G A T C G T C A G C G T A G T C A
C T A G T A C G G A C T T G C A T G C A C G A T T A C G C T G A T C G A C T G A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GGCTAGGGAA
TWGTCTGV----
A C G T A C G T C T A G C T A G A T G C G C A T C T G A A C T G A T C G T C A G C G T A G T C A
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T

RBPJ/MA1116.1/Jaspar

Match Rank:8
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GGCTAGGGAA--
--CCTGGGAAAG
C T A G C T A G A T G C G C A T C T G A A C T G A T C G T C A G C G T A G T C A A C G T A C G T
A C G T A C G T A G T C T A G C A G C T T C A G A C T G A C T G C G T A G T C A T G C A T A C G

RELB/MA1117.1/Jaspar

Match Rank:9
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GGCTAGGGAA---
--NNGGGGAATNC
C T A G C T A G A T G C G C A T C T G A A C T G A T C G T C A G C G T A G T C A A C G T A C G T A C G T
A C G T A C G T A T G C G T A C A T C G C A T G C A T G C T A G C T G A G C T A G C A T G A C T G A T C

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GGCTAGGGAA
NGCTN-----
C T A G C T A G A T G C G C A T C T G A A C T G A T C G T C A G C G T A G T C A
T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T