Information for 6-CAGACTCACG (Motif 9)

A G T C C G T A A C T G C G T A A G T C A C G T A G T C C G T A A G T C A C T G
Reverse Opposite:
A G T C A C T G A C G T A C T G C G T A A C T G A C G T A G T C A C G T A C T G
p-value:1e-3
log p-value:-8.799e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif9.09%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets117.0 +/- 0.0bp
Average Position of motif in Background110.7 +/- 32.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MSANTD3/MA1523.1/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CAGACTCACG
GTACACTCAC-
A C G T A G T C C G T A A C T G C G T A A G T C A C G T A G T C C G T A A G T C A C T G
A T C G A C G T T G C A G A T C C G T A G A T C G C A T G A T C G T C A G T A C A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTCACG
CCAGACRSVB-
A C G T A G T C C G T A A C T G C G T A A G T C A C G T A G T C C G T A A G T C A C T G
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTCACG
BCAGACWA---
A C G T A G T C C G T A A C T G C G T A A G T C A C G T A G T C C G T A A G T C A C T G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:4
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CAGACTCACG
AGCAACAGCCGCACC
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C A C G T A G T C C G T A A G T C A C T G
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C

Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CAGACTCACG
TGCTGAGTCA--
A C G T A C G T A G T C C G T A A C T G C G T A A G T C A C G T A G T C C G T A A G T C A C T G
C G A T T A C G T G A C G A C T C A T G C G T A T A C G A C G T G T A C C T G A A C G T A C G T

Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer

Match Rank:6
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CAGACTCACG----
--NHRTCACGACDN
A G T C C G T A A C T G C G T A A G T C A C G T A G T C C G T A A G T C A C T G A C G T A C G T A C G T A C G T
A C G T A C G T T C A G G C T A T C A G C A G T T G A C G T C A A G T C A T C G T G C A G T A C C A G T G A T C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTCACG
CCAGACAG---
A C G T A G T C C G T A A C T G C G T A A G T C A C G T A G T C C G T A A G T C A C T G
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

Smad2::Smad3/MA1622.1/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CAGACTCACG-
ATGATGACTCATAA
A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C A C G T A G T C C G T A A G T C A C T G A C G T
C T G A G A C T C A T G T C G A G C A T C A T G C G T A A T G C C G A T G T A C G C T A A G C T G C T A T G C A

AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CAGACTCACG
ATGACTCATC
A G T C C G T A A C T G C G T A A G T C A C G T A G T C C G T A A G T C A C T G
T C G A A C G T C A T G G C T A T A G C C G A T G T A C G C T A A C G T A T G C

FOS/MA0476.1/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CAGACTCACG
TGTGACTCATT
A C G T A G T C C G T A A C T G C G T A A G T C A C G T A G T C C G T A A G T C A C T G
C A G T T A C G A C G T A C T G C G T A A T G C A C G T A G T C C G T A A G C T A G C T