Information for 12-AGAGGAGTAG (Motif 17)

C G T A A C T G C G T A A C T G A C T G C G T A T C A G A C G T G T C A A C T G
Reverse Opposite:
A G T C A C G T C G T A A G T C A C G T A G T C A G T C A C G T A G T C A C G T
p-value:1e-7
log p-value:-1.671e+01
Information Content per bp:1.945
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif48.3
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets98.6 +/- 48.0bp
Average Position of motif in Background99.2 +/- 59.0bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.55
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Crx/MA0467.1/Jaspar

Match Rank:1
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-AGAGGAGTAG
AAGAGGATTAG
A C G T C G T A A C T G C G T A A C T G A C T G C G T A T C A G A C G T G T C A A C T G
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

PB0203.1_Zfp691_2/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---AGAGGAGTAG----
NTNNNAGGAGTCTCNTN
A C G T A C G T A C G T C G T A A C T G C G T A A C T G A C T G C G T A T C A G A C G T G T C A A C T G A C G T A C G T A C G T A C G T
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A

OTX2/MA0712.2/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGAGGAGTAG--
AAGGGATTAGAA
C G T A A C T G C G T A A C T G A C T G C G T A T C A G A C G T G T C A A C T G A C G T A C G T
G C T A C G T A C T A G C T A G C T A G G T C A C A G T G C A T C G T A C T A G C G T A C G T A

PB0117.1_Eomes_2/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGAGGAGTAG----
GCGGAGGTGTCGCCTC
A C G T A C G T C G T A A C T G C G T A A C T G A C T G C G T A T C A G A C G T G T C A A C T G A C G T A C G T A C G T A C G T
T A C G A T C G T C A G C T A G C T G A T A C G A T C G A G C T T C A G C G A T G A T C A C T G T A G C A G T C A G C T T A G C

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:5
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:AGAGGAGTAG-
---GGATTAGC
C G T A A C T G C G T A A C T G A C T G C G T A T C A G A C G T G T C A A C T G A C G T
A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

GSC2/MA0891.1/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGAGGAGTAG-
-GNGGATTAGN
C G T A A C T G C G T A A C T G A C T G C G T A T C A G A C G T G T C A A C T G A C G T
A C G T C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G

PITX1/MA0682.2/Jaspar

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AGAGGAGTAG
--NGGATTAN
C G T A A C T G C G T A A C T G A C T G C G T A T C A G A C G T G T C A A C T G
A C G T A C G T C A T G T C A G C A T G G T C A A C G T A C G T C G T A C T A G

GSC/MA0648.1/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGAGGAGTAG-
-NNGGATTAGN
C G T A A C T G C G T A A C T G A C T G C G T A T C A G A C G T G T C A A C T G A C G T
A C G T C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AGAGGAGTAG-
-VRGGATTARN
C G T A A C T G C G T A A C T G A C T G C G T A T C A G A C G T G T C A A C T G A C G T
A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

PH0015.1_Crx/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AGAGGAGTAG---
CGTTGGGGATTAGCCT
A C G T A C G T A C G T C G T A A C T G C G T A A C T G A C T G C G T A T C A G A C G T G T C A A C T G A C G T A C G T A C G T
A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T