Information for 4-CAGGCATTTAAT (Motif 6)

A G T C C G T A A C T G A C T G A G T C C G T A A C G T A C G T A C G T C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T C G T A C G T A C G T A A C G T A C T G A G T C A G T C A C G T A C T G
p-value:1e-4
log p-value:-1.060e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets189.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hmx1/MA0896.1/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CAGGCATTTAAT----
ACAAGCAATTAATGAAT
A C G T A G T C C G T A A C T G A C T G A G T C C G T A A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CAGGCATTTAAT----
ACAAGCAATTAATGAAT
A C G T A G T C C G T A A C T G A C T G A G T C C G T A A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:3
Score:0.68
Offset:6
Orientation:reverse strand
Alignment:CAGGCATTTAAT
------TTTAAT
A G T C C G T A A C T G A C T G A G T C C G T A A C G T A C G T A C G T C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T

PH0063.1_Hoxb8/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CAGGCATTTAAT---
ACCGGCAATTAATAAA
A C G T A G T C C G T A A C T G A C T G A G T C C G T A A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
G C T A T A G C A G T C C A T G C T A G G A T C G T C A C G T A C G A T G C A T C G T A G C T A G A C T G T C A C T G A C G T A

Hmx3/MA0898.1/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CAGGCATTTAAT----
ACAAGCAATTAAAGAAT
A C G T A G T C C G T A A C T G A C T G A G T C C G T A A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T

PH0043.1_Hmx3/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CAGGCATTTAAT----
ACAAGCAATTAAAGAAT
A C G T A G T C C G T A A C T G A C T G A G T C C G T A A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T

Hmx2/MA0897.1/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CAGGCATTTAAT----
ACAAGCAATTAAAGAAT
A C G T A G T C C G T A A C T G A C T G A G T C C G T A A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T C G A T A G C T G C A C T G A T C A G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A T C A G T C G A C T G A C A G T

PH0042.1_Hmx2/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CAGGCATTTAAT----
ACAAGCAATTAAAGAAT
A C G T A G T C C G T A A C T G A C T G A G T C C G T A A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T C G A T A G C T G C A C T G A T C A G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A T C A G T C G A C T G A C A G T

ISL2/MA0914.1/Jaspar

Match Rank:9
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CAGGCATTTAAT
---GCACTTAA-
A G T C C G T A A C T G A C T G A G T C C G T A A C G T A C G T A C G T C G T A C G T A A C G T
A C G T A C G T A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T

PH0005.1_Barhl1/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CAGGCATTTAAT--
AACAACCAATTAATTC
A C G T A C G T A G T C C G T A A C T G A C T G A G T C C G T A A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T
G T C A C T G A G T A C T C G A C T G A A T G C G A T C C T G A G C T A A C G T G A C T C G T A C T G A A C G T C G A T G A T C