| p-value: | 1e-9 |
| log p-value: | -2.166e+01 |
| Information Content per bp: | 1.731 |
| Number of Target Sequences with motif | 43.0 |
| Percentage of Target Sequences with motif | 4.08% |
| Number of Background Sequences with motif | 643.7 |
| Percentage of Background Sequences with motif | 1.35% |
| Average Position of motif in Targets | 103.6 +/- 52.3bp |
| Average Position of motif in Background | 97.5 +/- 55.5bp |
| Strand Bias (log2 ratio + to - strand density) | -0.5 |
| Multiplicity (# of sites on avg that occur together) | 1.02 |
| Motif File: | file (matrix) reverse opposite |
| SVG Files for Logos: | forward logo reverse opposite |
CHR(?)/Hela-CellCycle-Expression/Homer
| Match Rank: | 1 |
| Score: | 0.67 |
| Offset: | 2 |
| Orientation: | reverse strand |
| Alignment: | ACTTTAAAAC-- --TTTGAAACCG |
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|
NKX2-8/MA0673.1/Jaspar
| Match Rank: | 2 |
| Score: | 0.63 |
| Offset: | -2 |
| Orientation: | forward strand |
| Alignment: | --ACTTTAAAAC CCACTTGAA--- |
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|
|
LIN54/MA0619.1/Jaspar
| Match Rank: | 3 |
| Score: | 0.62 |
| Offset: | 0 |
| Orientation: | reverse strand |
| Alignment: | ACTTTAAAAC NATTCAAAT- |
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|
|
NKX2-3/MA0672.1/Jaspar
| Match Rank: | 4 |
| Score: | 0.60 |
| Offset: | -3 |
| Orientation: | forward strand |
| Alignment: | ---ACTTTAAAAC ACCACTTGAA--- |
|
|
|
TATA-Box(TBP)/Promoter/Homer
| Match Rank: | 5 |
| Score: | 0.60 |
| Offset: | 0 |
| Orientation: | forward strand |
| Alignment: | ACTTTAAAAC-- CCTTTTATAGNC |
|
|
|
PH0004.1_Nkx3-2/Jaspar
| Match Rank: | 6 |
| Score: | 0.59 |
| Offset: | -7 |
| Orientation: | forward strand |
| Alignment: | -------ACTTTAAAAC CATAACCACTTAACAAC |
|
|
|
PH0111.1_Nkx2-2/Jaspar
| Match Rank: | 7 |
| Score: | 0.59 |
| Offset: | -6 |
| Orientation: | forward strand |
| Alignment: | ------ACTTTAAAAC- ATAACCACTTGAAAATT |
|
|
|
TBX2/MA0688.1/Jaspar
| Match Rank: | 8 |
| Score: | 0.59 |
| Offset: | 2 |
| Orientation: | reverse strand |
| Alignment: | ACTTTAAAAC--- --TTTCACACCTN |
|
|
|
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer
| Match Rank: | 9 |
| Score: | 0.58 |
| Offset: | 2 |
| Orientation: | reverse strand |
| Alignment: | ACTTTAAAAC-- --TTTCACACCT |
|
|
|
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer
| Match Rank: | 10 |
| Score: | 0.58 |
| Offset: | 2 |
| Orientation: | forward strand |
| Alignment: | ACTTTAAAAC-- --ATTAACACCT |
|
|
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