Information for 2-TGTCTCGAAG (Motif 25)

A C G T A C T G A C G T A G T C A C G T A G T C A C T G C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A G T C A C T G C G T A A C T G C G T A A G T C C G T A
p-value:1e-4
log p-value:-9.289e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif8.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets79.0 +/- 0.0bp
Average Position of motif in Background169.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4/MA1153.1/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TGTCTCGAAG
TGTCTAGA--
A C G T A C T G A C G T A G T C A C G T A G T C A C T G C G T A C G T A A C T G
G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A A C G T A C G T

SMAD5/MA1557.1/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TGTCTCGAAG
TGTCTAGACA
A C G T A C T G A C G T A G T C A C G T A G T C A C T G C G T A C G T A A C T G
C G A T C T A G C A G T A T G C A C G T T G C A A C T G G T C A A G T C C T G A

SMAD3/MA0795.1/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TGTCTCGAAG
TGTCTAGACG
A C G T A C T G A C G T A G T C A C G T A G T C A C T G C G T A C G T A A C T G
C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----TGTCTCGAAG--
NNTNNTGTCTGGNNTNG
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T A G T C A C T G C G T A C G T A A C T G A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TGTCTCGAAG
CTGTCTGG---
A C G T A C G T A C T G A C G T A G T C A C G T A G T C A C T G C G T A C G T A A C T G
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TGTCTCGAAG---
NTNNCGTATCCAAGTNN
A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T A G T C A C T G C G T A C G T A A C T G A C G T A C G T A C G T
C G T A C G A T G C A T A T G C A T G C C T A G G A C T G T C A C G A T A G T C A G T C C T G A G T C A T A C G A G C T T G C A T A C G

PB0158.1_Rfx3_2/Jaspar

Match Rank:7
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------TGTCTCGAAG-------
NNTNGNNGTAACCAAGNNNNAGN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T A G T C A C T G C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T A G C G C A T A G C T A G C T A C T G A G C T A C T G C A T G G A C T G T C A G C T A T A G C A G T C C G T A C G T A T A C G A T C G T A C G C G A T T A G C T G C A C T A G A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:8
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:TGTCTCGAAG-
-----NGAAGC
A C G T A C T G A C G T A G T C A C G T A G T C A C T G C G T A C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TGTCTCGAAG
VBSYGTCTGG---
A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T A G T C A C T G C G T A C G T A A C T G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T

ZBED1/MA0749.1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TGTCTCGAAG-
TATGTCGCGATAG
A C G T A C G T A C G T A C T G A C G T A G T C A C G T A G T C A C T G C G T A C G T A A C T G A C G T
G A C T T G C A C G A T C T A G A G C T A G T C C T A G A G T C T C A G C T G A A G C T G C T A C A T G