Information for 20-CAGCACGAGA (Motif 27)

A G T C C G T A A C T G A G T C C G T A A G T C A C T G C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T A G T C A C T G A C G T A C T G A G T C A C G T A C T G
p-value:1e-7
log p-value:-1.655e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets124.5 +/- 24.9bp
Average Position of motif in Background119.5 +/- 56.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0206.1_Zic2_2/Jaspar

Match Rank:1
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----CAGCACGAGA
CCACACAGCAGGAGA
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A G T C C G T A A G T C A C T G C G T A A C T G C G T A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----CAGCACGAGA
CCACACAGCAGGAGA
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A G T C C G T A A G T C A C T G C G T A A C T G C G T A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CAGCACGAGA
CACAGCAGGGG-
A C G T A C G T A G T C C G T A A C T G A G T C C G T A A G T C A C T G C G T A A C T G C G T A
T A G C T C G A A G T C T G C A T A C G A G T C T C G A A T C G A C T G T A C G T C A G A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----CAGCACGAGA
GAGCACAGCAGGACA
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A G T C C G T A A G T C A C T G C G T A A C T G C G T A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Arntl/MA0603.1/Jaspar

Match Rank:5
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CAGCACGAGA--
--NCACGTGACN
A G T C C G T A A C T G A G T C C G T A A G T C A C T G C G T A A C T G C G T A A C G T A C G T
A C G T A C G T C T A G G T A C C T G A A G T C T C A G C G A T A C T G G T C A A G T C G T A C

MLXIPL/MA0664.1/Jaspar

Match Rank:6
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CAGCACGAGA-
-ATCACGTGAT
A G T C C G T A A C T G A G T C C G T A A G T C A C T G C G T A A C T G C G T A A C G T
A C G T C T G A C G A T A G T C G T C A A G T C A T C G G C A T A T C G G T C A G A C T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CAGCACGAGA
CACAGCAGGGGG
A C G T A C G T A G T C C G T A A C T G A G T C C G T A A G T C A C T G C G T A A C T G C G T A
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer

Match Rank:8
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CAGCACGAGA--
--KCACGTGMCN
A G T C C G T A A C T G A G T C C G T A A G T C A C T G C G T A A C T G C G T A A C G T A C G T
A C G T A C G T C A T G T G A C C G T A A G T C T A C G G C A T A C T G G T C A A T G C A G T C

BHLHE40/MA0464.2/Jaspar

Match Rank:9
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CAGCACGAGA-
-ATCACGTGAC
A G T C C G T A A C T G A G T C C G T A A G T C A C T G C G T A A C T G C G T A A C G T
A C G T T G C A C A G T G T A C T G C A G A T C T C A G G A C T A C T G G T C A G A T C

ARNT2/MA1464.1/Jaspar

Match Rank:10
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CAGCACGAGA-
-NGCACGTGAC
A G T C C G T A A C T G A G T C C G T A A G T C A C T G C G T A A C T G C G T A A C G T
A C G T T A C G C A T G G T A C C T G A A G T C C T A G G A C T A C T G G C T A A G T C