Information for 24-TTCAGATTACTT (Motif 31)

A C G T A C G T A G T C C G T A A C T G C G T A A C G T A C G T C G T A A G T C A C G T A C G T
Reverse Opposite:
C G T A C G T A A C T G A C G T C G T A C G T A A C G T A G T C A C G T A C T G C G T A C G T A
p-value:1e-3
log p-value:-8.068e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif8.33%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets6.0 +/- 0.0bp
Average Position of motif in Background150.6 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:1
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TTCAGATTACTT
GKVTCADRTTWC--
A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A C G T A C G T C G T A A G T C A C G T A C G T
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T A C G T

SIX1/MA1118.1/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TTCAGATTACTT
TATCAGGTTAC--
A C G T A C G T A C G T A G T C C G T A A C T G C G T A A C G T A C G T C G T A A G T C A C G T A C G T
C A G T T G C A G C A T G A T C C G T A C A T G C T A G G C A T C G A T G C T A G T A C A C G T A C G T

Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer

Match Rank:3
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----TTCAGATTACTT
VGGTVTCAGRTTWCA-
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A C G T A C G T C G T A A G T C A C G T A C G T
T A G C T C A G T C A G C A G T T C A G A C G T A G T C T C G A C T A G C T A G A C G T A C G T C G A T G T A C G T C A A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:4
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TTCAGATTACTT
GKMTCADRTTWC--
A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A C G T A C G T C G T A A G T C A C G T A C G T
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C A C G T A C G T

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TTCAGATTACTT-----
TTCNAAGTACTTNNNNN
A C G T A C G T A G T C C G T A A C T G C G T A A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A C G T A G T C T G A C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A T C G T A C G G C T A C A T G A G C T

GATA1/MA0035.4/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TTCAGATTACTT
-NNAGATTAGAN
A C G T A C G T A G T C C G T A A C T G C G T A A C G T A C G T C G T A A G T C A C G T A C G T
A C G T C G T A G C A T C G T A C A T G C G T A C G A T G C A T G C T A C A T G C G T A G C T A

OTX1/MA0711.1/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TTCAGATTACTT
--CGGATTAN--
A C G T A C G T A G T C C G T A A C T G C G T A A C G T A C G T C G T A A G T C A C G T A C G T
A C G T A C G T T A G C T A C G A T C G G T C A A C G T G C A T C G T A C T G A A C G T A C G T

Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TTCAGATTACTT
TAATCHGATTAC--
A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A C G T A C G T C G T A A G T C A C G T A C G T
G C A T C T G A T G C A G A C T A G T C G T A C T C A G C G T A A G C T A C G T G C T A G T A C A C G T A C G T

SIX2/MA1119.1/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TTCAGATTACTT--
GTATCAGGTTTCAGNN
A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T
C T A G C A G T T G C A G C A T G A T C C G T A C A T G C T A G G A C T C A G T C G A T G T A C G C T A A C T G C G A T C G A T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:10
Score:0.59
Offset:2
Orientation:forward strand
Alignment:TTCAGATTACTT
--RGGATTAR--
A C G T A C G T A G T C C G T A A C T G C G T A A C G T A C G T C G T A A G T C A C G T A C G T
A C G T A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T