Information for 4-TYATAGCT (Motif 27)

A G C T A G T C G T C A A C G T T G C A A T C G A G T C A C G T
Reverse Opposite:
C G T A T C A G T A G C A C G T C G T A C A G T C T A G C T G A
p-value:1e-6
log p-value:-1.454e+01
Information Content per bp:1.724
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif4.46%
Number of Background Sequences with motif889.9
Percentage of Background Sequences with motif1.86%
Average Position of motif in Targets88.7 +/- 52.6bp
Average Position of motif in Background100.5 +/- 57.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:TYATAGCT-
----NGCTN
A G C T A G T C G T C A A C G T T G C A A T C G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

CDX2/MA0465.2/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TYATAGCT-
NTTTTATTGCNN
A C G T A C G T A C G T A G C T A G T C G T C A A C G T T G C A A T C G A G T C A C G T A C G T
C G A T G C A T C G A T G C A T G C A T T C G A G A C T C A G T C T A G G A T C G C A T G A C T

SOX9/MA0077.1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TYATAGCT-
CCATTGTTC
A G C T A G T C G T C A A C G T T G C A A T C G A G T C A C G T A C G T
A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TYATAGCT
TTTNATTGCY
A C G T A C G T A G C T A G T C G T C A A C G T T G C A A T C G A G T C A C G T
A C G T A C G T C G A T A C G T G T C A A C G T C A G T C T A G A T G C G A T C

PH0064.1_Hoxb9/Jaspar

Match Rank:5
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------TYATAGCT--
NGANTTTTATGGCTCN
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A G T C G T C A A C G T T G C A A T C G A G T C A C G T A C G T A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

CUX2/MA0755.1/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TYATAGCT--
TTATCGATTA
A G C T A G T C G T C A A C G T T G C A A T C G A G T C A C G T A C G T A C G T
C G A T C G A T C G T A G C A T G A T C T C A G T C G A G A C T G A C T C G T A

Sox5/MA0087.1/Jaspar

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TYATAGCT-
--ATTGTTA
A G C T A G T C G T C A A C G T T G C A A T C G A G T C A C G T A C G T
A C G T A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T

CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TYATAGCT-
NTNATCGATA
A C G T A G C T A G T C G T C A A C G T T G C A A T C G A G T C A C G T A C G T
G C A T A G C T C A G T T C G A A G C T G A T C C T A G T C G A A C G T T G C A

SOX8/MA0868.2/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TYATAGCT--
CCATTGTTCT
A G C T A G T C G T C A A C G T T G C A A T C G A G T C A C G T A C G T A C G T
A T G C G A T C C G T A C A G T C G A T T C A G C G A T G A C T G A T C A C G T

PB0062.1_Sox12_1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TYATAGCT------
TAATTGTTCTAAAC
A G C T A G T C G T C A A C G T T G C A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C