| p-value: | 1e-7 |
| log p-value: | -1.620e+01 |
| Information Content per bp: | 1.818 |
| Number of Target Sequences with motif | 3.0 |
| Percentage of Target Sequences with motif | 23.08% |
| Number of Background Sequences with motif | 49.5 |
| Percentage of Background Sequences with motif | 0.07% |
| Average Position of motif in Targets | 111.7 +/- 27.9bp |
| Average Position of motif in Background | 75.0 +/- 88.3bp |
| Strand Bias (log2 ratio + to - strand density) | -1.0 |
| Multiplicity (# of sites on avg that occur together) | 1.00 |
| Motif File: | file (matrix) reverse opposite |
| SVG Files for Logos: | forward logo reverse opposite |
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer
| Match Rank: | 1 |
| Score: | 0.64 |
| Offset: | 2 |
| Orientation: | forward strand |
| Alignment: | MGGMSMWTARAT-- --GGCCATAAATCA |
|
|
|
PH0056.1_Hoxa9/Jaspar
| Match Rank: | 2 |
| Score: | 0.63 |
| Offset: | -1 |
| Orientation: | forward strand |
| Alignment: | -MGGMSMWTARAT---- ACGGCCATAAAATTAAT |
|
|
|
PH0124.1_Obox5_1/Jaspar
| Match Rank: | 3 |
| Score: | 0.61 |
| Offset: | -2 |
| Orientation: | forward strand |
| Alignment: | --MGGMSMWTARAT--- TAGAGGGATTAAATTTC |
|
|
|
MEIS2(var.2)/MA1640.1/Jaspar
| Match Rank: | 4 |
| Score: | 0.61 |
| Offset: | 2 |
| Orientation: | reverse strand |
| Alignment: | MGGMSMWTARAT----- --NNCCATAAATCATNN |
|
|
|
PBX2/MA1113.2/Jaspar
| Match Rank: | 5 |
| Score: | 0.59 |
| Offset: | 3 |
| Orientation: | forward strand |
| Alignment: | MGGMSMWTARAT---- ---GTCATAAATCATT |
|
|
|
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer
| Match Rank: | 6 |
| Score: | 0.59 |
| Offset: | 2 |
| Orientation: | forward strand |
| Alignment: | MGGMSMWTARAT-- --NGYCATAAAWCH |
|
|
|
PH0073.1_Hoxc9/Jaspar
| Match Rank: | 7 |
| Score: | 0.59 |
| Offset: | -2 |
| Orientation: | forward strand |
| Alignment: | --MGGMSMWTARAT-- GGAGGTCATTAATTAT |
|
|
|
PH0013.1_Cdx2/Jaspar
| Match Rank: | 8 |
| Score: | 0.57 |
| Offset: | -1 |
| Orientation: | forward strand |
| Alignment: | -MGGMSMWTARAT--- AAAGGTAATAAAATTT |
|
|
|
PH0012.1_Cdx1/Jaspar
| Match Rank: | 9 |
| Score: | 0.57 |
| Offset: | -2 |
| Orientation: | forward strand |
| Alignment: | --MGGMSMWTARAT-- TAAGGTAATAAAATTA |
|
|
|
HOXA13/MA0650.2/Jaspar
| Match Rank: | 10 |
| Score: | 0.56 |
| Offset: | 2 |
| Orientation: | forward strand |
| Alignment: | MGGMSMWTARAT- --CCCAATAAAAC |
|
|
|