Information for 1-ATTTACATCG (Motif 8)

C G T A A C G T A C G T A C G T C G T A A G T C C G T A A C G T A G T C A C T G
Reverse Opposite:
A G T C A C T G C G T A A C G T A C T G A C G T C G T A C G T A C G T A A C G T
p-value:1e-3
log p-value:-8.543e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif8.33%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets166.0 +/- 0.0bp
Average Position of motif in Background175.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---ATTTACATCG
BTVATTWGCATA-
A C G T A C G T A C G T C G T A A C G T A C G T A C G T C G T A A G T C C G T A A C G T A G T C A C T G
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:2
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:ATTTACATCG
ATTTGCATA-
C G T A A C G T A C G T A C G T C G T A A G T C C G T A A C G T A G T C A C T G
G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A A C G T

PH0158.1_Rhox11_2/Jaspar

Match Rank:3
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---ATTTACATCG----
TCNCTTTACAGCGNNNT
A C G T A C G T A C G T C G T A A C G T A C G T A C G T C G T A A G T C C G T A A C G T A G T C A C T G A C G T A C G T A C G T A C G T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T

Rhox11/MA0629.1/Jaspar

Match Rank:4
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---ATTTACATCG----
TCNNTTTACAGCGNNNT
A C G T A C G T A C G T C G T A A C G T A C G T A C G T C G T A A G T C C G T A A C G T A G T C A C T G A C G T A C G T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

PH0157.1_Rhox11_1/Jaspar

Match Rank:5
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---ATTTACATCG----
TCNNTTTACAGCGNNNT
A C G T A C G T A C G T C G T A A C G T A C G T A C G T C G T A A G T C C G T A A C G T A G T C A C T G A C G T A C G T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---ATTTACATCG
CTCATTTGCATW-
A C G T A C G T A C G T C G T A A C G T A C G T A C G T C G T A A G T C C G T A A C G T A G T C A C T G
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A A C G T

FOXB1/MA0845.1/Jaspar

Match Rank:7
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--ATTTACATCG
ATATTTACATA-
A C G T A C G T C G T A A C G T A C G T A C G T C G T A A G T C C G T A A C G T A G T C A C T G
C G T A G A C T T C G A C G A T C G A T A C G T C T G A G A T C G C T A G A C T C G T A A C G T

POU5F1/MA1115.1/Jaspar

Match Rank:8
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-ATTTACATCG
NATTTGCATNN
A C G T C G T A A C G T A C G T A C G T C G T A A G T C C G T A A C G T A G T C A C T G
G T C A C G T A C G A T G A C T C G A T T C A G G A T C C T G A A G C T C G T A G C A T

POU3F4/MA0789.1/Jaspar

Match Rank:9
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:ATTTACATCG
ATTTGCATA-
C G T A A C G T A C G T A C G T C G T A A G T C C G T A A C G T A G T C A C T G
G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.68
Offset:0
Orientation:forward strand
Alignment:ATTTACATCG
ATTTGCATAA
C G T A A C G T A C G T A C G T C G T A A G T C C G T A A C G T A G T C A C T G
C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A