Information for 6-CTMTATAGSGGC (Motif 6)

A T G C A G C T G T C A A C G T G T C A A C G T T C G A A T C G A T C G T C A G A C T G G T A C
Reverse Opposite:
A C T G G T A C A G T C A T G C A T G C A C G T G T C A C A G T T C G A C A G T C T G A A T C G
p-value:1e-6
log p-value:-1.486e+01
Information Content per bp:1.645
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif46.67%
Number of Background Sequences with motif2332.5
Percentage of Background Sequences with motif3.55%
Average Position of motif in Targets75.2 +/- 55.4bp
Average Position of motif in Background102.3 +/- 73.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SRF/MA0083.3/Jaspar

Match Rank:1
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CTMTATAGSGGC-
TGACCATATATGGTCA
A C G T A C G T A C G T A T G C A G C T G T C A A C G T G T C A A C G T T C G A A T C G A T C G T C A G A C T G G T A C A C G T
G C A T A C T G G T C A A T G C A G T C C G T A C G A T C T G A A C G T C G T A G C A T T A C G C T A G C A G T T G A C C G T A

PB0127.1_Gata6_2/Jaspar

Match Rank:2
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CTMTATAGSGGC-
GCGGCGATATCGCAGCG
A C G T A C G T A C G T A C G T A T G C A G C T G T C A A C G T G T C A A C G T T C G A A T C G A T C G T C A G A C T G G T A C A C G T
C A T G A T G C A T C G T C A G G T A C C A T G T G C A C A G T G T C A A C G T G T A C C A T G A T G C T G C A A T C G G A T C C A G T

PB0128.1_Gcm1_2/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTMTATAGSGGC----
TGCGCATAGGGGAGGAG
A C G T A T G C A G C T G T C A A C G T G T C A A C G T T C G A A T C G A T C G T C A G A C T G G T A C A C G T A C G T A C G T A C G T
C G A T C A T G A T G C T A C G G T A C T C G A A G C T T C G A C A T G A C T G A C T G A C T G T C G A A T C G T C A G G T C A A C T G

YY1(Zf)/Promoter/Homer

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CTMTATAGSGGC
CAAGATGGCGGC
A T G C A G C T G T C A A C G T G T C A A C G T T C G A A T C G A T C G T C A G A C T G G T A C
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

YY2/MA0748.2/Jaspar

Match Rank:5
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CTMTATAGSGGC-
--AGATGGCGGCG
A T G C A G C T G T C A A C G T G T C A A C G T T C G A A T C G A T C G T C A G A C T G G T A C A C G T
A C G T A C G T G T C A T A C G T C G A A G C T T A C G C T A G G A T C A T C G T A C G G T A C T A C G

TATA-Box(TBP)/Promoter/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CTMTATAGSGGC
GNCTATAAAAGG--
A C G T A C G T A T G C A G C T G T C A A C G T G T C A A C G T T C G A A T C G A T C G T C A G A C T G G T A C
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T A C G T

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CTMTATAGSGGC
CCATATATGGNA
A T G C A G C T G T C A A C G T G T C A A C G T T C G A A T C G A T C G T C A G A C T G G T A C
A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A

TBP/MA0108.2/Jaspar

Match Rank:8
Score:0.53
Offset:-7
Orientation:reverse strand
Alignment:-------CTMTATAGSGGC
NNNNNNCTTTTATAN----
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T G T C A A C G T G T C A A C G T T C G A A T C G A T C G T C A G A C T G G T A C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:9
Score:0.53
Offset:-7
Orientation:reverse strand
Alignment:-------CTMTATAGSGGC
NNNNNNCTTTTATAN----
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T G T C A A C G T G T C A A C G T T C G A A T C G A T C G T C A G A C T G G T A C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T A C G T

MF0008.1_MADS_class/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CTMTATAGSGGC
CCATATATGG--
A T G C A G C T G T C A A C G T G T C A A C G T T C G A A T C G A T C G T C A G A C T G G T A C
G A T C A G T C G C T A C G A T C G T A C G A T C G T A G C A T C T A G C A T G A C G T A C G T