| p-value: | 1e-4 |
| log p-value: | -9.666e+00 |
| Information Content per bp: | 1.530 |
| Number of Target Sequences with motif | 1.0 |
| Percentage of Target Sequences with motif | 14.29% |
| Number of Background Sequences with motif | 1.2 |
| Percentage of Background Sequences with motif | 0.00% |
| Average Position of motif in Targets | 142.0 +/- 0.0bp |
| Average Position of motif in Background | 37.0 +/- 0.0bp |
| Strand Bias (log2 ratio + to - strand density) | 10.0 |
| Multiplicity (# of sites on avg that occur together) | 1.00 |
| Motif File: | file (matrix) reverse opposite |
| SVG Files for Logos: | forward logo reverse opposite |
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer
| Match Rank: | 1 |
| Score: | 0.63 |
| Offset: | -2 |
| Orientation: | forward strand |
| Alignment: | --GTAAAATTTAAG GGTTAAACATTAA- |
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|
|
PH0048.1_Hoxa13/Jaspar
| Match Rank: | 2 |
| Score: | 0.61 |
| Offset: | -7 |
| Orientation: | forward strand |
| Alignment: | -------GTAAAATTTAAG AAACCTCGTAAAATTT--- |
|
|
|
PH0068.1_Hoxc13/Jaspar
| Match Rank: | 3 |
| Score: | 0.60 |
| Offset: | -7 |
| Orientation: | forward strand |
| Alignment: | -------GTAAAATTTAAG AAAGCTCGTAAAATTT--- |
|
|
|
PH0075.1_Hoxd10/Jaspar
| Match Rank: | 4 |
| Score: | 0.60 |
| Offset: | -6 |
| Orientation: | forward strand |
| Alignment: | ------GTAAAATTTAAG AATGCAATAAAATTTAT- |
|
|
|
PH0114.1_Nkx2-5/Jaspar
| Match Rank: | 5 |
| Score: | 0.59 |
| Offset: | 3 |
| Orientation: | reverse strand |
| Alignment: | GTAAAATTTAAG------- ---AAATTCAAGTGGNTTN |
|
|
|
PH0077.1_Hoxd12/Jaspar
| Match Rank: | 6 |
| Score: | 0.59 |
| Offset: | -7 |
| Orientation: | forward strand |
| Alignment: | -------GTAAAATTTAAG CAAGGTCGTAAAATCTT-- |
|
|
|
Hoxa11/MA0911.1/Jaspar
| Match Rank: | 7 |
| Score: | 0.59 |
| Offset: | -4 |
| Orientation: | forward strand |
| Alignment: | ----GTAAAATTTAAG GGTCGTAAAATT---- |
|
|
|
HOXC12/MA0906.1/Jaspar
| Match Rank: | 8 |
| Score: | 0.59 |
| Offset: | -4 |
| Orientation: | forward strand |
| Alignment: | ----GTAAAATTTAAG GGTCGTAAAAA----- |
|
|
|
HOXC9/MA0485.2/Jaspar
| Match Rank: | 9 |
| Score: | 0.57 |
| Offset: | -3 |
| Orientation: | forward strand |
| Alignment: | ---GTAAAATTTAAG GTCGTAAAAT----- |
|
|
|
HOXD11/MA0908.1/Jaspar
| Match Rank: | 10 |
| Score: | 0.57 |
| Offset: | -3 |
| Orientation: | forward strand |
| Alignment: | ---GTAAAATTTAAG GTCGTAAAAA----- |
|
|
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