Information for 9-ATGAATTGTTCA (Motif 18)

C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C T G A C G T A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A C G T A A G T C C G T A C G T A A C G T A C G T A G T C C G T A A C G T
p-value:1e-3
log p-value:-8.382e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif7.14%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets104.0 +/- 0.0bp
Average Position of motif in Background162.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0066.1_Sox17_1/Jaspar

Match Rank:1
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--ATGAATTGTTCA-
NNATNAATTGTTTNN
A C G T A C G T C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C T G A C G T A C G T A G T C C G T A A C G T
G C A T C T A G C G A T C G A T A G C T G C T A C G T A G C A T C G A T T C A G C G A T A C G T G A C T G C T A A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:2
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-ATGAATTGTTCA----
AATCAATTGTTCCGCTA
A C G T C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C T G A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T
T G A C T C A G A G C T A T G C G C T A C G T A A G C T C G A T A T C G C G A T A G C T A T G C T G A C A C T G G A T C C A G T T C G A

PB0074.1_Sox8_1/Jaspar

Match Rank:3
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--ATGAATTGTTCA---
GTATCTATTGTTCTTTA
A C G T A C G T C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C T G A C G T A C G T A G T C C G T A A C G T A C G T A C G T
C A G T C A G T C G T A C G A T A G C T G C A T C G T A G A C T C G A T T C A G C G A T G A C T G T A C G C A T C A G T C G A T C G T A

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--ATGAATTGTTCA-
TCATGAATWATTCAT
A C G T A C G T C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C T G A C G T A C G T A G T C C G T A A C G T
G A C T G A T C G C T A C G A T C T A G G T C A C G T A C G A T G C A T C G T A G C A T C A G T A G T C G T C A C A G T

PB0065.1_Sox15_1/Jaspar

Match Rank:5
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--ATGAATTGTTCA---
ANNTCTATTGTTCNNNA
A C G T A C G T C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C T G A C G T A C G T A G T C C G T A A C G T A C G T A C G T
C G T A C G T A T C G A A G C T G A T C G C A T C G T A C G A T C G A T C T A G C G A T G A C T G T A C G C T A G T A C G A C T C G T A

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.75
Offset:0
Orientation:forward strand
Alignment:ATGAATTGTTCA
ATGCATAATTCA
C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C T G A C G T A C G T A G T C C G T A
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

PB0175.1_Sox4_2/Jaspar

Match Rank:7
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--ATGAATTGTTCA---
GGAAAAATTGTTAGGAA
A C G T A C G T C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C T G A C G T A C G T A G T C C G T A A C G T A C G T A C G T
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A

PB0072.1_Sox5_1/Jaspar

Match Rank:8
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-ATGAATTGTTCA---
NNTTTATTGTTCTNNN
A C G T C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C T G A C G T A C G T A G T C C G T A A C G T A C G T A C G T
G C T A C G A T G C A T G A C T G C A T C G T A G A C T G C A T C T A G G A C T A G C T G A T C G A C T G C T A C G T A G C T A

PB0063.1_Sox13_1/Jaspar

Match Rank:9
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-ATGAATTGTTCA---
AANTTATTGTTCTNNA
A C G T C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C T G A C G T A C G T A G T C C G T A A C G T A C G T A C G T
C G T A C G T A G C A T G C A T G C A T C G T A A G C T C G A T C T A G C G A T G A C T G T A C A G C T G C A T C T G A G C T A

POU4F1/MA0790.1/Jaspar

Match Rank:10
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-ATGAATTGTTCA-
CATTAATTATTCAT
A C G T C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C T G A C G T A C G T A G T C C G T A A C G T
G T A C C T G A A G C T G C A T G C T A G C T A G C A T G C A T C G T A C G A T C A G T G A T C C T G A A G C T