Information for 11-GACTAATAGG (Motif 21)

A C T G C G T A A G T C A C G T C G T A C G T A A C G T C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T C G T A A C G T A C G T C G T A A C T G A C G T A G T C
p-value:1e-7
log p-value:-1.720e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets176.8 +/- 7.8bp
Average Position of motif in Background105.1 +/- 34.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

VENTX/MA0724.1/Jaspar

Match Rank:1
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:GACTAATAGG-
--CTAATCGNT
A C T G C G T A A G T C A C G T C G T A C G T A A C G T C G T A A C T G A C T G A C G T
A C G T A C G T G A T C A C G T C G T A C G T A C A G T A G T C C T A G A C T G G C A T

Isl1/MA1608.1/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GACTAATAGG-
NNCTAATGGNN
A C T G C G T A A G T C A C G T C G T A C G T A A C G T C G T A A C T G A C T G A C G T
A C G T T C A G G A T C C G A T C T G A C G T A G A C T C A T G C T A G T G C A G A C T

LHX2/MA0700.2/Jaspar

Match Rank:3
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GACTAATAGG--
-NNTAATTGGNN
A C T G C G T A A G T C A C G T C G T A C G T A A C G T C G T A A C T G A C T G A C G T A C G T
A C G T C G T A G C A T C G A T C G T A G C T A C G A T C G A T C T A G T A C G G C A T G C A T

BSX/MA0876.1/Jaspar

Match Rank:4
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GACTAATAGG
--NTAATTGG
A C T G C G T A A G T C A C G T C G T A C G T A A C G T C G T A A C T G A C T G
A C G T A C G T A G C T A C G T C G T A C G T A A G C T A C G T C T A G A T C G

BARX1/MA0875.1/Jaspar

Match Rank:5
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GACTAATAGG
--NTAATTGN
A C T G C G T A A G T C A C G T C G T A C G T A A C G T C G T A A C T G A C T G
A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C

PH0089.1_Isx/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GACTAATAGG----
ACNNCTAATTAGNNNN
A C G T A C G T A C T G C G T A A G T C A C G T C G T A C G T A A C G T C G T A A C T G A C T G A C G T A C G T A C G T A C G T
G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:7
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----GACTAATAGG
ACCGTGACTAATTNN
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A C G T C G T A C G T A A C G T C G T A A C T G A C T G
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:8
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GACTAATAGG
--CTAATKGV
A C T G C G T A A G T C A C G T C G T A C G T A A C G T C G T A A C T G A C T G
A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C

MSX2/MA0708.1/Jaspar

Match Rank:9
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GACTAATAGG
--NTAATTGG
A C T G C G T A A G T C A C G T C G T A C G T A A C G T C G T A A C T G A C T G
A C G T A C G T A G C T C A G T T C G A C G T A A C G T C A G T C T A G A T C G

MSX1/MA0666.1/Jaspar

Match Rank:10
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GACTAATAGG
--NTAATTGG
A C T G C G T A A G T C A C G T C G T A C G T A A C G T C G T A A C T G A C T G
A C G T A C G T A G T C A C G T T G C A G T C A A C G T A C G T C T A G T A C G