Information for 2-GAATCCTACG (Motif 6)

A C T G C G T A C G T A A C G T A G T C A G T C A C G T C G T A A G T C A C T G
Reverse Opposite:
A G T C A C T G A C G T C G T A A C T G A C T G C G T A A C G T A C G T A G T C
p-value:1e-4
log p-value:-9.476e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets151.0 +/- 0.0bp
Average Position of motif in Background8.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0181.1_Spdef_2/Jaspar

Match Rank:1
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GAATCCTACG--
GATAACATCCTAGTAG
A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T A G T C A G T C A C G T C G T A A G T C A C T G A C G T A C G T
C T A G C G T A A C G T G C T A C T G A A G T C C G T A C G A T G A T C A G T C A G C T G C T A A C T G G C A T C G T A T C A G

OTX2/MA0712.2/Jaspar

Match Rank:2
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GAATCCTACG
NNCTAATCCCNN-
A C G T A C G T A C G T A C T G C G T A C G T A A C G T A G T C A G T C A C G T C G T A A G T C A C T G
G C A T G C A T G A T C G C A T C G T A G T C A C A G T G A T C G A T C G A T C G C A T C G A T A C G T

PITX1/MA0682.2/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GAATCCTACG
CTAATCCC---
A C G T A C T G C G T A C G T A A C G T A G T C A G T C A C G T C G T A A G T C A C T G
G A T C A C G T C G T A C G T A A C G T G T A C A G T C G T A C A C G T A C G T A C G T

PB0203.1_Zfp691_2/Jaspar

Match Rank:4
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GAATCCTACG--
TACGAGACTCCTCTAAC
A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T A G T C A G T C A C G T C G T A A G T C A C T G A C G T A C G T
C A G T C T G A A T G C A C T G C G T A C A T G C T G A A T G C A C G T A G T C T G A C A G C T G A T C C G A T T G C A G T C A T A G C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GAATCCTACG
NYTAATCCYB--
A C G T A C G T A C T G C G T A C G T A A C G T A G T C A G T C A C G T C G T A A G T C A C T G
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GAATCCTACG
YTAATCCY---
A C G T A C T G C G T A C G T A A C G T A G T C A G T C A C G T C G T A A G T C A C T G
G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T A C G T A C G T

PITX2/MA1547.1/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GAATCCTACG
ATAATCCC---
A C G T A C T G C G T A C G T A A C G T A G T C A G T C A C G T C G T A A G T C A C T G
G T C A C G A T C T G A C G T A A C G T A G T C A G T C T G A C A C G T A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GAATCCTACG
CTTAATCCC---
A C G T A C G T A C T G C G T A C G T A A C G T A G T C A G T C A C G T C G T A A G T C A C T G
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GAATCCTACG
GCTAATCC----
A C G T A C G T A C T G C G T A C G T A A C G T A G T C A G T C A C G T C G T A A G T C A C T G
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAATCCTACG
TAATCCCN--
A C T G C G T A C G T A A C G T A G T C A G T C A C G T C G T A A G T C A C T G
C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T A C G T