Information for 11-AGAGAGCCATCA (Motif 13)

C G T A A C T G C G T A A C T G C G T A A C T G A G T C A G T C C G T A A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A C G T A C T G A C T G A G T C A C G T A G T C A C G T A G T C A C G T
p-value:1e-4
log p-value:-9.625e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets177.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.64
Offset:4
Orientation:forward strand
Alignment:AGAGAGCCATCA--
----GGCCATTAAC
C G T A A C T G C G T A A C T G C G T A A C T G A G T C A G T C C G T A A C G T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGAGAGCCATCA--
NAGATWNBNATCTNN
A C G T C G T A A C T G C G T A A C T G C G T A A C T G A G T C A G T C C G T A A C G T A G T C C G T A A C G T A C G T
A T G C C G T A A C T G C G T A A C G T G C T A T C G A A G C T C G A T C G T A A C G T A G T C C G A T A C T G G A T C

ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AGAGAGCCATCA--------
AADGAGVCANYASTACAGNC
C G T A A C T G C G T A A C T G C G T A A C T G A G T C A G T C C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G C T A T C G A C G A T C T A G C T G A C A T G T A G C G T A C C T G A C A T G G A T C G C T A T A G C G A C T C T G A A T G C T G C A C T A G C T G A G A T C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGAGAGCCATCA-
-GYCATCMATCAT
C G T A A C T G C G T A A C T G C G T A A C T G A G T C A G T C C G T A A C G T A G T C C G T A A C G T
A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.58
Offset:4
Orientation:forward strand
Alignment:AGAGAGCCATCA--
----RGCAATNAAA
C G T A A C T G C G T A A C T G C G T A A C T G A G T C A G T C C G T A A C G T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A

PH0134.1_Pbx1/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AGAGAGCCATCA-------
--TCACCCATCAATAAACA
C G T A A C T G C G T A A C T G C G T A A C T G A G T C A G T C C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

ZFP42/MA1651.1/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AGAGAGCCATCA------
NNNNGGCAGCCATTTTGNNNN
A C G T A C G T A C G T C G T A A C T G C G T A A C T G C G T A A C T G A G T C A G T C C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A G T C T A C G T A C G C T G A T C A G C T A G T A G C T G C A C A T G T G A C A G T C T C G A G A C T A G C T G C A T G A C T C A T G C A T G C G T A C G T A T A G C

ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer

Match Rank:8
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----AGAGAGCCATCA
RHHCAGAGAGGB----
A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C T G C G T A A C T G A G T C A G T C C G T A A C G T A G T C C G T A
T C A G G T C A G C T A A G T C C G T A A T C G T C G A T C A G C G T A A C T G A C T G A C T G A C G T A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:9
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AGAGAGCCATCA------
--AGAGCCATAAAATTCG
C G T A A C T G C G T A A C T G C G T A A C T G A G T C A G T C C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:AGAGAGCCATCA
--YCATCMATCA
C G T A A C T G C G T A A C T G C G T A A C T G A G T C A G T C C G T A A C G T A G T C C G T A
A C G T A C G T G A T C G T A C C T G A A C G T G A T C G T C A C T G A A C G T G A T C G C T A