Information for 4-CGCTTAGC (Motif 37)

A G T C A C T G A G T C A C G T A C G T C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T C G T A C G T A A C T G A G T C A C T G
p-value:1e-2
log p-value:-5.115e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif141.5
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets51.0 +/- 0.0bp
Average Position of motif in Background83.7 +/- 96.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BARHL1/MA0877.2/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CGCTTAGC
NCGTTTAN-
A C G T A G T C A C T G A G T C A C G T A C G T C G T A A C T G A G T C
G T A C G A T C C T A G G C A T A C G T G C A T C G T A A T C G A C G T

BARHL2/MA0635.1/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CGCTTAGC
ANCGTTTANN
A C G T A C G T A G T C A C T G A G T C A C G T A C G T C G T A A C T G A G T C
C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CGCTTAGC
BCMATTAG-
A C G T A G T C A C T G A G T C A C G T A C G T C G T A A C T G A G T C
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T

VENTX/MA0724.1/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CGCTTAGC
ACCGATTAG-
A C G T A C G T A G T C A C T G A G T C A C G T A C G T C G T A A C T G A G T C
C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CGCTTAGC
GGATTAGC
A G T C A C T G A G T C A C G T A C G T C G T A A C T G A G T C
T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CGCTTAGC--
NCCTTATCTG
A G T C A C T G A G T C A C G T A C G T C G T A A C T G A G T C A C G T A C G T
A G C T A G T C A T G C A C G T A C G T C G T A A C G T A G T C C G A T A T C G

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CGCTTAGC--
NNCTTATCTN
A G T C A C T G A G T C A C G T A C G T C G T A A C T G A G T C A C G T A C G T
A G C T A G T C A T G C A G C T A C G T C G T A A C G T A G T C C G A T A T G C

Nkx3-1/MA0124.2/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CGCTTAGC
ACCACTTAA-
A C G T A C G T A G T C A C T G A G T C A C G T A C G T C G T A A C T G A G T C
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T

ZNF682/MA1599.1/Jaspar

Match Rank:9
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----CGCTTAGC---
NNAGGGGCTTGGCCNN
A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C A C G T A C G T C G T A A C T G A G T C A C G T A C G T A C G T
T C G A A G C T G C T A C A T G A T C G T C A G C T A G T A G C A C G T A C G T T C A G A T C G A G T C G A T C A G T C T C A G

Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer

Match Rank:10
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CGCTTAGC---
-YCTTATCTBN
A G T C A C T G A G T C A C G T A C G T C G T A A C T G A G T C A C G T A C G T A C G T
A C G T A G C T A T G C G A C T G C A T C G T A A G C T G T A C C G A T A T C G A G T C