Information for 2-GTTGAGTG (Motif 21)

A C T G A C G T A C G T A C T G C T G A C T A G A C G T A C T G
Reverse Opposite:
A G T C C G T A A G T C A G C T A G T C G T C A C G T A A G T C
p-value:1e-3
log p-value:-8.276e+00
Information Content per bp:1.900
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif26.67%
Number of Background Sequences with motif1624.7
Percentage of Background Sequences with motif2.18%
Average Position of motif in Targets106.4 +/- 30.2bp
Average Position of motif in Background102.2 +/- 75.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.75
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX2-5/MA0063.2/Jaspar

Match Rank:1
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-GTTGAGTG--
NNTTGAGTGNN
A C G T A C T G A C G T A C G T A C T G C T G A C T A G A C G T A C T G A C G T A C G T
C G A T A G C T C G A T G C A T C T A G C G T A C T A G G A C T C T A G A C T G A G C T

NKX2-2/MA1645.1/Jaspar

Match Rank:2
Score:0.86
Offset:-2
Orientation:reverse strand
Alignment:--GTTGAGTG----
NNNTTGAGTGGNNN
A C G T A C G T A C T G A C G T A C G T A C T G C T G A C T A G A C G T A C T G A C G T A C G T A C G T A C G T
C G A T C G A T A G T C A G C T C A G T T A C G C G T A C A T G C G A T C T A G A C T G G C A T C G A T C T G A

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:3
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:GTTGAGTG---
CTTGAGTGGCT
A C T G A C G T A C G T A C T G C T G A C T A G A C G T A C T G A C G T A C G T A C G T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:4
Score:0.80
Offset:0
Orientation:forward strand
Alignment:GTTGAGTG--
BTBRAGTGSN
A C T G A C G T A C G T A C T G C T G A C T A G A C G T A C T G A C G T A C G T
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:GTTGAGTG---
-TTGAGTGSTT
A C T G A C G T A C G T A C T G C T G A C T A G A C G T A C T G A C G T A C G T A C G T
A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

MSANTD3/MA1523.1/Jaspar

Match Rank:6
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:GTTGAGTG---
-GTGAGTGNAC
A C T G A C G T A C G T A C T G C T G A C T A G A C G T A C T G A C G T A C G T A C G T
A C G T C A T G C A G T C T A G C G T A C T A G G C A T C T A G A C G T T G C A T A G C

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.76
Offset:1
Orientation:forward strand
Alignment:GTTGAGTG---
-TTRAGTGSYK
A C T G A C G T A C G T A C T G C T G A C T A G A C G T A C T G A C G T A C G T A C G T
A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:8
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:GTTGAGTG--
CTYRAGTGSY
A C T G A C G T A C G T A C T G C T G A C T A G A C G T A C T G A C G T A C G T
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

PH0026.1_Duxbl/Jaspar

Match Rank:9
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----GTTGAGTG-----
NNNNGTTGATTGGGTCG
A C G T A C G T A C G T A C G T A C T G A C G T A C G T A C T G C T G A C T A G A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A T G C C G T A A G T C A G T C T C A G G A C T C G A T C T A G C T G A A C G T A C G T C T A G T C A G T C A G G A C T G A T C T C A G

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:10
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GTTGAGTG---
-TTAAGTGCTT
A C T G A C G T A C G T A C T G C T G A C T A G A C G T A C T G A C G T A C G T A C G T
A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T