| p-value: | 1e-2 |
| log p-value: | -5.760e+00 |
| Information Content per bp: | 1.530 |
| Number of Target Sequences with motif | 1.0 |
| Percentage of Target Sequences with motif | 7.69% |
| Number of Background Sequences with motif | 17.7 |
| Percentage of Background Sequences with motif | 0.03% |
| Average Position of motif in Targets | 87.0 +/- 0.0bp |
| Average Position of motif in Background | 110.5 +/- 86.3bp |
| Strand Bias (log2 ratio + to - strand density) | 10.0 |
| Multiplicity (# of sites on avg that occur together) | 1.00 |
| Motif File: | file (matrix) reverse opposite |
| SVG Files for Logos: | forward logo reverse opposite |
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer
| Match Rank: | 1 |
| Score: | 0.86 |
| Offset: | -1 |
| Orientation: | reverse strand |
| Alignment: | -CGTCGTGA--- NHGTCGTGAYDN |
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HOXA9/MA0594.2/Jaspar
| Match Rank: | 2 |
| Score: | 0.70 |
| Offset: | 1 |
| Orientation: | forward strand |
| Alignment: | CGTCGTGA--- -GTCGTAAACG |
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PH0077.1_Hoxd12/Jaspar
| Match Rank: | 3 |
| Score: | 0.67 |
| Offset: | -3 |
| Orientation: | forward strand |
| Alignment: | ---CGTCGTGA------ CAAGGTCGTAAAATCTT |
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|
HOXB9/MA1503.1/Jaspar
| Match Rank: | 4 |
| Score: | 0.67 |
| Offset: | 1 |
| Orientation: | forward strand |
| Alignment: | CGTCGTGA--- -GTCGTAAAAT |
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|
|
HOXC9/MA0485.2/Jaspar
| Match Rank: | 5 |
| Score: | 0.66 |
| Offset: | 1 |
| Orientation: | forward strand |
| Alignment: | CGTCGTGA--- -GTCGTAAAAT |
|
|
|
PH0076.1_Hoxd11/Jaspar
| Match Rank: | 6 |
| Score: | 0.66 |
| Offset: | -3 |
| Orientation: | forward strand |
| Alignment: | ---CGTCGTGA------ TAAGGTCGTAAAATCCT |
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|
|
HOXD11/MA0908.1/Jaspar
| Match Rank: | 7 |
| Score: | 0.65 |
| Offset: | 1 |
| Orientation: | forward strand |
| Alignment: | CGTCGTGA--- -GTCGTAAAAA |
|
|
|
PH0065.1_Hoxc10/Jaspar
| Match Rank: | 8 |
| Score: | 0.65 |
| Offset: | -3 |
| Orientation: | forward strand |
| Alignment: | ---CGTCGTGA----- TAAAGTCGTAAAACGT |
|
|
|
PH0066.1_Hoxc11/Jaspar
| Match Rank: | 9 |
| Score: | 0.65 |
| Offset: | -3 |
| Orientation: | forward strand |
| Alignment: | ---CGTCGTGA----- TAAAGTCGTAAAATAG |
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|
|
RXRG(var.2)/MA1556.1/Jaspar
| Match Rank: | 10 |
| Score: | 0.65 |
| Offset: | -2 |
| Orientation: | reverse strand |
| Alignment: | --CGTCGTGA---- GAGGTCATGACCTC |
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