Information for 7-GTGTVTGTRTGT (Motif 9)

T C A G C G A T T A C G C G A T T A G C C G A T A C T G C A G T C T G A C G A T C A T G C A G T
Reverse Opposite:
G T C A G T A C G C T A G A C T G T C A G T A C G C T A A T C G G C T A A T G C G C T A A G T C
p-value:1e-12
log p-value:-2.872e+01
Information Content per bp:1.672
Number of Target Sequences with motif108.0
Percentage of Target Sequences with motif11.74%
Number of Background Sequences with motif2646.8
Percentage of Background Sequences with motif5.53%
Average Position of motif in Targets89.2 +/- 50.4bp
Average Position of motif in Background103.0 +/- 72.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.23
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----GTGTVTGTRTGT
NNGCGTGTGTGCNGCN
A C G T A C G T A C G T A C G T T C A G C G A T T A C G C G A T T A G C C G A T A C T G C A G T C T G A C G A T C A T G C A G T
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GTGTVTGTRTGT-
NNTNNTGTCTGGNNTNG
A C G T A C G T A C G T A C G T T C A G C G A T T A C G C G A T T A G C C G A T A C T G C A G T C T G A C G A T C A T G C A G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

KLF9/MA1107.2/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GTGTVTGTRTGT---
NGNGTGGGTGTGGCNG
A C G T T C A G C G A T T A C G C G A T T A G C C G A T A C T G C A G T C T G A C G A T C A T G C A G T A C G T A C G T A C G T
A C T G T C A G C A T G T C A G C A G T T C A G A C T G T A C G A G C T A T C G A C G T T C A G A C T G A T G C A G C T A C T G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GTGTVTGTRTGT
VBSYGTCTGG----
A C G T A C G T T C A G C G A T T A C G C G A T T A G C C G A T A C T G C A G T C T G A C G A T C A T G C A G T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GTGTVTGTRTGT----
NTTNTATGAATGTGNNC
A C G T T C A G C G A T T A C G C G A T T A G C C G A T A C T G C A G T C T G A C G A T C A T G C A G T A C G T A C G T A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

Stat2/MA1623.1/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GTGTVTGTRTGT
NNTTTCTGTTTCT
A C G T T C A G C G A T T A C G C G A T T A G C C G A T A C T G C A G T C T G A C G A T C A T G C A G T
C G T A A T C G A G C T G A C T A G C T G A T C C G A T A T C G A G C T C G A T G A C T G A T C G A C T

NR1D2/MA1532.1/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GTGTVTGTRTGT---
GGGTTAGTGGGTCAT
T C A G C G A T T A C G C G A T T A G C C G A T A C T G C A G T C T G A C G A T C A T G C A G T A C G T A C G T A C G T
T C A G C A T G C A T G A C G T G A C T C G T A A T C G A C G T C T A G C A T G C T A G C A G T A G T C C T G A C A G T

ZSCAN4/MA1155.1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GTGTVTGTRTGT---
TTTTCAGTGTGTGCA
T C A G C G A T T A C G C G A T T A G C C G A T A C T G C A G T C T G A C G A T C A T G C A G T A C G T A C G T A C G T
G A C T G A C T C A G T G C A T T G A C T G C A C A T G A C G T C T A G G A C T A C T G C G A T A T C G A G T C C T G A

POL007.1_BREd/Jaspar

Match Rank:9
Score:0.55
Offset:6
Orientation:forward strand
Alignment:GTGTVTGTRTGT-
------GTTTGTT
T C A G C G A T T A C G C G A T T A G C C G A T A C T G C A G T C T G A C G A T C A T G C A G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C G T C A G T A C G T A C T G A C G T A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GTGTVTGTRTGT--
--GAATGTTTGTTT
T C A G C G A T T A C G C G A T T A G C C G A T A C T G C A G T C T G A C G A T C A T G C A G T A C G T A C G T
A C G T A C G T C T A G G C T A G C T A G A C T C T A G A C G T C G A T C A G T C T A G G A C T A C G T A G C T