Information for 13-CCAATTTGTG (Motif 29)

A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C T G A C G T A C T G
Reverse Opposite:
A G T C C G T A A G T C C G T A C G T A C G T A A C G T A C G T A C T G A C T G
p-value:1e-3
log p-value:-7.022e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif25.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets36.0 +/- 0.0bp
Average Position of motif in Background137.6 +/- 73.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0089.1_Isx/Jaspar

Match Rank:1
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----CCAATTTGTG--
ACTCCTAATTAGTCGT
A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C T G A C G T A C T G A C G T A C G T
G C T A T G A C A G C T T G A C G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C G T A G T C T A C G C G A T

PH0109.1_Nkx1-1/Jaspar

Match Rank:2
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----CCAATTTGTG---
TGCGCTAATTAGTGGGA
A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C T G A C G T A C T G A C G T A C G T A C G T
C G A T T A C G G T A C T C A G A G T C G A C T G T C A C G T A C G A T A C G T C T G A T C A G A G C T C A T G T A C G A C T G T C G A

PH0033.1_Gbx1/Jaspar

Match Rank:3
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----CCAATTTGTG--
TGCCACTAATTAGTGTA
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C T G A C G T A C T G A C G T A C G T
G C A T C T A G A T G C T G A C T C G A G T A C G A C T G T C A C T G A A G C T A C G T C T G A A C T G A C G T A C T G A C G T G C T A

PH0107.1_Msx2/Jaspar

Match Rank:4
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----CCAATTTGTG--
GAAGACCAATTAGCGCT
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C T G A C G T A C T G A C G T A C G T
T C A G T G C A C T G A T A C G C T G A A T G C G A T C C G T A G T C A C G A T G A C T C T G A C A T G G A T C C A T G G A T C A G C T

PH0034.1_Gbx2/Jaspar

Match Rank:5
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CCAATTTGTG---
AGCGCTAATTAGCGATT
A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C T G A C G T A C T G A C G T A C G T A C G T
C G T A T A C G T G A C T C A G A T G C A G C T G T C A G C T A C A G T A C G T C T G A T A C G A G T C T A C G C T G A A C G T C A G T

PH0029.1_En2/Jaspar

Match Rank:6
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CCAATTTGTG---
TGCACTAATTAGTGGAA
A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C T G A C G T A C T G A C G T A C G T A C G T
C G A T T C A G G T A C T G C A G A T C G A C T G C T A C G T A C G A T C A G T C T G A C T A G A G C T A T C G T C A G G C T A G C A T

LHX2/MA0700.2/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCAATTTGTG
AACCAATTAAT-
A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C T G A C G T A C T G
C G T A C G T A A T G C G A T C G C T A G C T A C G A T C G A T G C T A C G T A G C A T A C G T

PH0092.1_Lhx2/Jaspar

Match Rank:8
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----CCAATTTGTG--
NNNNNCTAATTAGTTTA
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C T G A C G T A C T G A C G T A C G T
A T C G C A G T A C G T G T A C T C G A G A T C G A C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C A G T A C G T G C T A

PH0110.1_Nkx1-2/Jaspar

Match Rank:9
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CCAATTTGTG---
TGNACTAATTAGTGNAN
A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C T G A C G T A C T G A C G T A C G T A C G T
C G A T T A C G G A T C T G C A G A T C G A C T G T C A C G T A C G A T A C G T C T G A C T A G A G C T A C T G T G A C G T C A G T A C

PH0156.1_Rax/Jaspar

Match Rank:10
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----CCAATTTGTG--
NNGCGCTAATTAGTGCA
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C T G A C G T A C T G A C G T A C G T
C T A G A C G T A T C G T A G C C T A G A G T C G A C T T C G A C T G A A G C T A C G T C T G A T C A G A G C T T A C G A T G C G C T A