Information for 17-GCCTTAGTGT (Motif 36)

A C T G A G T C A G T C A C G T A C G T C G T A A C T G A C G T A C T G A C G T
Reverse Opposite:
C G T A A G T C C G T A A G T C A C G T C G T A C G T A A C T G A C T G A G T C
p-value:1e-3
log p-value:-6.971e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif34.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets168.0 +/- 0.0bp
Average Position of motif in Background132.4 +/- 109.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCCTTAGTGT-
-CCTTTGTTTT
A C T G A G T C A G T C A C G T A C G T C G T A A C T G A C G T A C T G A C G T A C G T
A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

SOX10/MA0442.2/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCCTTAGTGT-
NNCTTTGTTNN
A C T G A G T C A G T C A C G T A C G T C G T A A C T G A C G T A C T G A C G T A C G T
A C G T A G C T T G A C C G A T C G A T C G A T T C A G C G A T A C G T G A C T G A C T

PB0166.1_Sox12_2/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GCCTTAGTGT----
ANTCCTTTGTCTNNNN
A C G T A C G T A C T G A G T C A G T C A C G T A C G T C G T A A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T
C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T

Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCCTTAGTGT--
BCCWTTGTBYKV
A C T G A G T C A G T C A C G T A C G T C G T A A C T G A C G T A C T G A C G T A C G T A C G T
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A T G C G A C T A C T G T A C G

PB0168.1_Sox14_2/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GCCTTAGTGT---
NNNCCATTGTGTNAN
A C G T A C G T A C T G A G T C A G T C A C G T A C G T C G T A A C T G A C G T A C T G A C G T A C G T A C G T A C G T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCCTTAGTGT--
GCCTCAGGGCAT
A C T G A G T C A G T C A C G T A C G T C G T A A C T G A C G T A C T G A C G T A C G T A C G T
A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GCCTTAGTGT
TGCCTGAGGCN
A C G T A C T G A G T C A G T C A C G T A C G T C G T A A C T G A C G T A C T G A C G T
G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCCTTAGTGT--
--TTRAGTGSYK
A C T G A G T C A G T C A C G T A C G T C G T A A C T G A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCCTTAGTGT-
-CCWTTGTYYB
A C T G A G T C A G T C A C G T A C G T C G T A A C T G A C G T A C T G A C G T A C G T
A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCCTTAGTGT
-CCWTTGTY-
A C T G A G T C A G T C A C G T A C G T C G T A A C T G A C G T A C T G A C G T
A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T