Information for 13-CTHGDCGTCC (Motif 36)

A G T C A C G T G A C T A C T G C A G T A G T C A C T G A C G T A T G C A G T C
Reverse Opposite:
T C A G A T C G G T C A A G T C A C T G G C T A G T A C C G T A C G T A C T A G
p-value:1e-3
log p-value:-7.278e+00
Information Content per bp:1.718
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif27.27%
Number of Background Sequences with motif1344.7
Percentage of Background Sequences with motif1.67%
Average Position of motif in Targets76.4 +/- 18.6bp
Average Position of motif in Background98.6 +/- 76.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0032.1_IRC900814_1/Jaspar

Match Rank:1
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CTHGDCGTCC--
GNNATTTGTCGTAANN
A C G T A C G T A C G T A C G T A G T C A C G T G A C T A C T G C A G T A G T C A C T G A C G T A T G C A G T C A C G T A C G T
T C A G G A T C G C A T C G T A C G A T C G A T G A C T A C T G G A C T A G T C A C T G C A G T T C G A C T G A G C T A G C A T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:2
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CTHGDCGTCC-
---TACGTGCV
A G T C A C G T G A C T A C T G C A G T A G T C A C T G A C G T A T G C A G T C A C G T
A C G T A C G T A C G T A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C

ZNF135/MA1587.1/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTHGDCGTCC---
CCTCGACCTCCTGA
A C G T A G T C A C G T G A C T A C T G C A G T A G T C A C T G A C G T A T G C A G T C A C G T A C G T A C G T
A G T C A G T C A G C T A G T C T C A G C T G A T A G C A G T C A G C T A T G C G A T C G A C T T C A G C T G A

Gmeb1/MA0615.1/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CTHGDCGTCC-----
GAGTGTACGTAAGATGG
A C G T A C G T A G T C A C G T G A C T A C T G C A G T A G T C A C T G A C G T A T G C A G T C A C G T A C G T A C G T A C G T A C G T
A T C G G T C A A C T G A C G T C A G T C A G T T C G A A G T C C T A G A G C T G T C A G T A C T A C G C G T A A G C T T C A G A T C G

PB0027.1_Gmeb1_1/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CTHGDCGTCC-----
GAGTGTACGTAAGATGG
A C G T A C G T A G T C A C G T G A C T A C T G C A G T A G T C A C T G A C G T A T G C A G T C A C G T A C G T A C G T A C G T A C G T
A T C G G T C A A C T G A C G T C A G T C A G T T C G A A G T C C T A G A G C T G T C A G T A C T A C G C G T A A G C T T C A G A T C G

HIF1A/MA1106.1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CTHGDCGTCC--
--GTACGTGCCC
A G T C A C G T G A C T A C T G C A G T A G T C A C T G A C G T A T G C A G T C A C G T A C G T
A C G T A C G T T A C G A G C T C G T A A G T C C T A G A G C T T C A G G T A C A T G C A T G C

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CTHGDCGTCC
--TGACGT--
A G T C A C G T G A C T A C T G C A G T A G T C A C T G A C G T A T G C A G T C
A C G T A C G T A C G T C A T G C G T A A G T C A C T G G A C T A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CTHGDCGTCC
--RTACGTGC
A G T C A C G T G A C T A C T G C A G T A G T C A C T G A C G T A T G C A G T C
A C G T A C G T C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CTHGDCGTCC
--GGACGTGC
A G T C A C G T G A C T A C T G C A G T A G T C A C T G A C G T A T G C A G T C
A C G T A C G T T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C

Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CTHGDCGTCC---
-NHGTCGTGAYDN
A G T C A C G T G A C T A C T G C A G T A G T C A C T G A C G T A T G C A G T C A C G T A C G T A C G T
A C G T C T A G G T C A C A T G A C G T A T G C T C A G C A G T A C T G G T C A A G T C C G A T A G T C