Information for 6-ATMACYTACCTA (Motif 9)

T G C A C G A T G T A C C G T A G T A C G A C T A C G T C G T A A G T C G T A C A C G T C G T A
Reverse Opposite:
A C G T G T C A A C T G T C A G C G A T C G T A C T G A C A T G A C G T A C T G C G T A A C G T
p-value:1e-13
log p-value:-3.069e+01
Information Content per bp:1.749
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets110.8 +/- 47.8bp
Average Position of motif in Background104.0 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)4.0
Multiplicity (# of sites on avg that occur together)2.43
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:ATMACYTACCTA--
TTGACCTANTTATN
T G C A C G A T G T A C C G T A G T A C G A C T A C G T C G T A A G T C G T A C A C G T C G T A A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:ATMACYTACCTA
-NNACTTACCTN
T G C A C G A T G T A C C G T A G T A C G A C T A C G T C G T A A G T C G T A C A C G T C G T A
A C G T C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G

ZKSCAN5/MA1652.1/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--ATMACYTACCTA
NNCTCACCTCCTNN
A C G T A C G T T G C A C G A T G T A C C G T A G T A C G A C T A C G T C G T A A G T C G T A C A C G T C G T A
A G C T A G C T G T A C A G C T A G T C T C G A G A T C A G T C A C G T A G T C G A T C G A C T A G T C G A T C

RORC/MA1151.1/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:ATMACYTACCTA-
-TGACCTANTTAN
T G C A C G A T G T A C C G T A G T A C G A C T A C G T C G T A A G T C G T A C A C G T C G T A A C G T
A C G T G A C T T C A G T G C A G A T C G T A C A G C T T G C A T A G C G C A T C G A T G C T A G A C T

Nkx3-2/MA0122.3/Jaspar

Match Rank:5
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---ATMACYTACCTA
ATAACCACTTAAA--
A C G T A C G T A C G T T G C A C G A T G T A C C G T A G T A C G A C T A C G T C G T A A G T C G T A C A C G T C G T A
C G T A C G A T C G T A C G T A T G A C G A T C G C T A G T A C G C A T G A C T G C T A C G T A G C T A A C G T A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:6
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----ATMACYTACCTA-
CATAACCACTTAACAAC
A C G T A C G T A C G T A C G T T G C A C G A T G T A C C G T A G T A C G A C T A C G T C G T A A G T C G T A C A C G T C G T A A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

TEAD2/MA1121.1/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:ATMACYTACCTA--
-TCACATTCCAGCC
T G C A C G A T G T A C C G T A G T A C G A C T A C G T C G T A A G T C G T A C A C G T C G T A A C G T A C G T
A C G T G A C T G A T C T C G A T G A C C T G A A G C T C G A T A G T C G A T C G C T A C A T G A T G C T A G C

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:ATMACYTACCTA
-TGACCTARTT-
T G C A C G A T G T A C C G T A G T A C G A C T A C G T C G T A A G T C G T A C A C G T C G T A
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:ATMACYTACCTA
-TGACCTARTT-
T G C A C G A T G T A C C G T A G T A C G A C T A C G T C G T A A G T C G T A C A C G T C G T A
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T

RORA/MA0071.1/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:ATMACYTACCTA
-TGACCTTGAT-
T G C A C G A T G T A C C G T A G T A C G A C T A C G T C G T A A G T C G T A C A C G T C G T A
A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T