Information for 23-CAAAGGCCATGA (Motif 21)

A G T C C G T A C G T A C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A A C G T A C T G A C T G A G T C A G T C A C G T A C G T A C G T A C T G
p-value:1e-4
log p-value:-9.702e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets189.0 +/- 0.0bp
Average Position of motif in Background66.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4A/MA0114.4/Jaspar

Match Rank:1
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--CAAAGGCCATGA
TCCAAAGTCCAAA-
A C G T A C G T A G T C C G T A C G T A C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C T G C G T A
C A G T G A T C G A T C T G C A T C G A C T G A A C T G C A G T G A T C G A T C C G T A C T G A C T G A A C G T

HNF4G/MA0484.2/Jaspar

Match Rank:2
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--CAAAGGCCATGA
TCCAAAGTCCAGA-
A C G T A C G T A G T C C G T A C G T A C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C T G C G T A
C A G T A G T C G A T C T C G A T C G A C T G A A C T G C A G T G A T C G A T C C G T A T C A G C T G A A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CAAAGGCCATGA
CAAAGGTCAG--
A G T C C G T A C G T A C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C T G C G T A
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:4
Score:0.70
Offset:-7
Orientation:forward strand
Alignment:-------CAAAGGCCATGA
CANAGNNCAAAGTCCA---
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C T G C G T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:5
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CAAAGGCCATGA-
TCTCAAAGGTCACGAG
A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C T G C G T A A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

NR4A1/MA1112.2/Jaspar

Match Rank:6
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CAAAGGCCATGA
TTAAAGGTCAAA-
A C G T A G T C C G T A C G T A C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C T G C G T A
C A G T G C A T C T G A C T G A T C G A C A T G C A T G A C G T A G T C C T G A T C G A C T G A A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:7
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CAAAGGCCATGA-
TCTCAAAGGTCACCTG
A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C T G C G T A A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

RARB(var.3)/MA1552.1/Jaspar

Match Rank:8
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CAAAGGCCATGA----
--AAGGTCATGACCTT
A G T C C G T A C G T A C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C T G A T C G A A C T G C A T G A G C T A G T C C T G A G A C T T C A G T G C A G T A C G A T C A G C T G A C T

RARG(var.3)/MA1553.1/Jaspar

Match Rank:9
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CAAAGGCCATGA----
--AAGGTCATGACCTT
A G T C C G T A C G T A C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C T G A T C G A C A T G C A T G C G A T A G T C C T G A G A C T T C A G G C T A G T A C G T A C A G C T G A C T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:10
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CAAAGGCCATGA
-CAAGGHCANV-
A G T C C G T A C G T A C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C T G C G T A
A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T