Information for 5-RKTGTSRRATMT (Motif 6)

C T G A A C T G A C G T A C T G A C G T A T C G C T G A C T A G C G T A A C G T G T C A A C G T
Reverse Opposite:
C G T A A C G T C G T A A C G T A G T C A G C T A T G C G T C A A G T C C G T A G T A C A G C T
p-value:1e-4
log p-value:-1.017e+01
Information Content per bp:1.809
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif22.22%
Number of Background Sequences with motif79.7
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets147.0 +/- 18.0bp
Average Position of motif in Background93.4 +/- 67.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CEBPA/MA0102.4/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--RKTGTSRRATMT
NNATTGTGCAATNN
A C G T A C G T C T G A A C T G A C G T A C T G A C G T A T C G C T G A C T A G C G T A A C G T G T C A A C G T
C G T A C G A T T C G A G C A T C A G T C T A G G A C T C T A G G T A C G T C A C G T A A G C T G T C A G C T A

PB0013.1_Eomes_1/Jaspar

Match Rank:2
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----RKTGTSRRATMT
GAAAAGGTGTGAAAATT
A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C G T A C T G A C G T A T C G C T G A C T A G C G T A A C G T G T C A A C G T
A C G T T C G A G C T A C T G A C T G A C T A G A C T G A G C T C T A G G A C T A C T G C T G A G T C A G T C A G C T A G A C T G A C T

Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-RKTGTSRRATMT
AGGTGTGAAA---
A C G T C T G A A C T G A C G T A C T G A C G T A T C G C T G A C T A G C G T A A C G T G T C A A C G T
C T G A C T A G A C T G G C A T C T A G G C A T A T C G C T G A C G T A G T C A A C G T A C G T A C G T

CEBPD/MA0836.2/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--RKTGTSRRATMT
NNATTGTGCAATN-
A C G T A C G T C T G A A C T G A C G T A C T G A C G T A T C G C T G A C T A G C G T A A C G T G T C A A C G T
C G T A C G A T T C G A G A C T C A G T C T A G G A C T C T A G G T A C G T C A C T G A A G C T G T C A A C G T

TBX2/MA0688.1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--RKTGTSRRATMT
AAGGTGTGAAA---
A C G T A C G T C T G A A C T G A C G T A C T G A C G T A T C G C T G A C T A G C G T A A C G T G T C A A C G T
C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A A C G T A C G T A C G T

TBR1/MA0802.1/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-RKTGTSRRATMT
AGGTGTGAAA---
A C G T C T G A A C T G A C G T A C T G A C G T A T C G C T G A C T A G C G T A A C G T G T C A A C G T
C T G A C T A G A T C G A G C T A T C G G A C T A C T G C T G A G C T A G C T A A C G T A C G T A C G T

EOMES/MA0800.1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--RKTGTSRRATMT
AAGGTGTGAAAAT-
A C G T A C G T C T G A A C T G A C G T A C T G A C G T A T C G C T G A C T A G C G T A A C G T G T C A A C G T
C T G A C T G A C T A G A C T G A G C T T C A G G A C T A C T G T C G A G C T A G T C A C G T A G A C T A C G T

PH0164.1_Six4/Jaspar

Match Rank:8
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----RKTGTSRRATMT
TNNNNGGTGTCATNTNT
A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C G T A C T G A C G T A T C G C T G A C T A G C G T A A C G T G T C A A C G T
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-RKTGTSRRATMT
AGGTGTGAAM---
A C G T C T G A A C T G A C G T A C T G A C G T A T C G C T G A C T A G C G T A A C G T G T C A A C G T
C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A A C G T A C G T A C G T

TBX18/MA1565.1/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---RKTGTSRRATMT
GGAGGTGTGAAA---
A C G T A C G T A C G T C T G A A C T G A C G T A C T G A C G T A T C G C T G A C T A G C G T A A C G T G T C A A C G T
C T A G C T A G T C G A T C A G C T A G G A C T T C A G C A G T T A C G C G T A C T G A T C G A A C G T A C G T A C G T