Information for 4-TCAGVCAAAATG (Motif 4)

G A C T A G T C G T C A A C T G T A C G A G T C C G T A T C G A C G T A C T G A C G A T A C T G
Reverse Opposite:
T G A C C G T A A G C T C G A T A G C T C G A T C T A G A G T C A G T C A C G T A C T G C T G A
p-value:1e-4
log p-value:-9.674e+00
Information Content per bp:1.763
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif28.57%
Number of Background Sequences with motif840.2
Percentage of Background Sequences with motif1.64%
Average Position of motif in Targets95.6 +/- 41.6bp
Average Position of motif in Background98.3 +/- 73.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:TCAGVCAAAATG
BCAGACWA----
G A C T A G T C G T C A A C T G T A C G A G T C C G T A T C G A C G T A C T G A C G A T A C T G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TCAGVCAAAATG
CCAGACAG----
G A C T A G T C G T C A A C T G T A C G A G T C C G T A T C G A C G T A C T G A C G A T A C T G
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----TCAGVCAAAATG
CAAATCCAGACATCACA
A C G T A C G T A C G T A C G T A C G T G A C T A G T C G T C A A C T G T A C G A G T C C G T A T C G A C G T A C T G A C G A T A C T G
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TCAGVCAAAATG
CCAGACRSVB--
G A C T A G T C G T C A A C T G T A C G A G T C C G T A T C G A C G T A C T G A C G A T A C T G
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TCAGVCAAAATG
CACAGN-------
A C G T G A C T A G T C G T C A A C T G T A C G A G T C C G T A T C G A C G T A C T G A C G A T A C T G
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF136/MA1588.1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TCAGVCAAAATG--
GTCAACCAAGAATTC
A C G T G A C T A G T C G T C A A C T G T A C G A G T C C G T A T C G A C G T A C T G A C G A T A C T G A C G T A C G T
C A T G G A C T G A T C G T C A C T G A A G T C G A T C G T C A T C G A C T A G C T G A C G T A A G C T G C A T A G T C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TCAGVCAAAATG
ATGCCAGACN-----
A C G T A C G T A C G T G A C T A G T C G T C A A C T G T A C G A G T C C G T A T C G A C G T A C T G A C G A T A C T G
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T

Smad4/MA1153.1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TCAGVCAAAATG
TCTAGACA-----
A C G T G A C T A G T C G T C A A C T G T A C G A G T C C G T A T C G A C G T A C T G A C G A T A C T G
A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----TCAGVCAAAATG
AGGTGHCAGACA-----
A C G T A C G T A C G T A C G T A C G T G A C T A G T C G T C A A C T G T A C G A G T C C G T A T C G A C G T A C T G A C G A T A C T G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T

Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TCAGVCAAAATG
BMRVACAAWGGV
G A C T A G T C G T C A A C T G T A C G A G T C C G T A T C G A C G T A C T G A C G A T A C T G
A T G C T G A C C T G A T A C G C G T A A G T C C G T A C G T A C G T A C T A G T C A G T G C A