Information for 8-TTTAATGACCAA (Motif 8)

A C G T A C G T A C G T C G T A C G T A A C G T A C T G C G T A A G T C A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G A C T G A C G T A G T C C G T A A C G T A C G T C G T A C G T A C G T A
p-value:1e-11
log p-value:-2.658e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets173.3 +/- 15.4bp
Average Position of motif in Background126.8 +/- 50.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0073.1_Hoxc9/Jaspar

Match Rank:1
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---TTTAATGACCAA-
NNAATTAATGACCNNN
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C T G C G T A A G T C A G T C C G T A C G T A A C G T
T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C

NKX6-3/MA1530.1/Jaspar

Match Rank:2
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:TTTAATGACCAA
TTTAATGAN---
A C G T A C G T A C G T C G T A C G T A A C G T A C T G C G T A A G T C A G T C C G T A C G T A
C G A T C G A T A G C T C T G A C G T A A C G T T C A G C T G A A T C G A C G T A C G T A C G T

NR1H4/MA1110.1/Jaspar

Match Rank:3
Score:0.76
Offset:1
Orientation:forward strand
Alignment:TTTAATGACCAA
-TCAATGACCTA
A C G T A C G T A C G T C G T A C G T A A C G T A C T G C G T A A G T C A G T C C G T A C G T A
A C G T A C G T A G T C C G T A C T G A A G C T C T A G G T C A G T A C G T A C A G C T G C T A

HOXC10/MA0905.1/Jaspar

Match Rank:4
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-TTTAATGACCAA
NTTTTACGAC---
A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C T G C G T A A G T C A G T C C G T A C G T A
C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C A C G T A C G T A C G T

PH0012.1_Cdx1/Jaspar

Match Rank:5
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---TTTAATGACCAA-
NAATTTTATTACCTNN
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C T G C G T A A G T C A G T C C G T A C G T A A C G T
C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A

HOXB4/MA1499.1/Jaspar

Match Rank:6
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:TTTAATGACCAA
-NTAATGAT---
A C G T A C G T A C G T C G T A C G T A A C G T A C T G C G T A A G T C A G T C C G T A C G T A
A C G T A G T C A G C T G T C A C G T A A G C T A C T G C T G A A G C T A C G T A C G T A C G T

Hoxa11/MA0911.1/Jaspar

Match Rank:7
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--TTTAATGACCAA
ANTTTTACGACC--
A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C T G C G T A A G T C A G T C C G T A C G T A
G C T A C G T A C G A T C G A T G C A T G C A T G C T A G A T C C T A G T C G A A G T C G A T C A C G T A C G T

HOXA4/MA1496.1/Jaspar

Match Rank:8
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:TTTAATGACCAA
-NTAATGAC---
A C G T A C G T A C G T C G T A C G T A A C G T A C T G C G T A A G T C A G T C C G T A C G T A
A C G T A G T C A G C T T C G A G T C A A G C T A C T G C T G A A G T C A C G T A C G T A C G T

NKX6-1/MA0674.1/Jaspar

Match Rank:9
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:TTTAATGACCAA
-TTAATTAN---
A C G T A C G T A C G T C G T A C G T A A C G T A C T G C G T A A G T C A G T C C G T A C G T A
A C G T C G A T A G C T C G T A C G T A C A G T C A G T C T G A A T G C A C G T A C G T A C G T

HOXC4/MA1504.1/Jaspar

Match Rank:10
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:TTTAATGACCAA
-NTAATGAN---
A C G T A C G T A C G T C G T A C G T A A C G T A C T G C G T A A G T C A G T C C G T A C G T A
A C G T A G C T A G C T C G T A C G T A A G C T A C T G C T G A A G T C A C G T A C G T A C G T