Information for 4-GAGCTCACGT (Motif 9)

A C T G G T C A A C T G A G T C A C G T A G T C C G T A A G T C A C T G A C G T
Reverse Opposite:
C G T A A G T C A C T G A C G T A C T G C G T A A C T G A G T C A C G T A G T C
p-value:1e-10
log p-value:-2.381e+01
Information Content per bp:1.966
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets123.7 +/- 24.0bp
Average Position of motif in Background112.0 +/- 45.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:1
Score:0.69
Offset:4
Orientation:forward strand
Alignment:GAGCTCACGT----
----GCACGTACCC
A C T G G T C A A C T G A G T C A C G T A G T C C G T A A G T C A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

Arntl/MA0603.1/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GAGCTCACGT--
--GGTCACGTGC
A C T G G T C A A C T G A G T C A C G T A G T C C G T A A G T C A C T G A C G T A C G T A C G T
A C G T A C G T C A T G T C A G C A G T G T A C G C T A A G T C C T A G G A C T C A T G G A T C

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:3
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:GAGCTCACGT-
---BGCACGTA
A C T G G T C A A C T G A G T C A C G T A G T C C G T A A G T C A C T G A C G T A C G T
A C G T A C G T A C G T A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:4
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:GAGCTCACGT--
----GCACGTAY
A C T G G T C A A C T G A G T C A C G T A G T C C G T A A G T C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T

E-box(bHLH)/Promoter/Homer

Match Rank:5
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GAGCTCACGT--
CCGGTCACGTGA
A C T G G T C A A C T G A G T C A C G T A G T C C G T A A G T C A C T G A C G T A C G T A C G T
A T G C A T G C A T C G T A C G A G C T A G T C G C T A A G T C T C A G G A C T A C T G T C G A

Arnt/MA0004.1/Jaspar

Match Rank:6
Score:0.68
Offset:5
Orientation:reverse strand
Alignment:GAGCTCACGT-
-----CACGTG
A C T G G T C A A C T G A G T C A C G T A G T C C G T A A G T C A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C A C T G A G C T A C T G

USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GAGCTCACGT--
--GGTCACGTGA
A C T G G T C A A C T G A G T C A C G T A G T C C G T A A G T C A C T G A C G T A C G T A C G T
A C G T A C G T T A C G T C A G A G C T A T G C C G T A A G T C T C A G A C G T A C T G T C G A

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:8
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:GAGCTCACGT--
----GCACGTNC
A C T G G T C A A C T G A G T C A C G T A G T C C G T A A G T C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C

PB0007.1_Bhlhb2_1/Jaspar

Match Rank:9
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---GAGCTCACGT---------
NTNNTNGTCACGTGACNNNTNC
A C G T A C G T A C G T A C T G G T C A A C T G A G T C A C G T A G T C C G T A A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G G C A T C T G A A G C T C A G T T C A G T A C G C A G T G T A C C T G A A G T C T C A G G A C T A C T G G T C A G A T C A G C T T G A C G C A T C G A T G A T C G A T C

BHLHE40/MA0464.2/Jaspar

Match Rank:10
Score:0.67
Offset:3
Orientation:forward strand
Alignment:GAGCTCACGT---
---ATCACGTGAC
A C T G G T C A A C T G A G T C A C G T A G T C C G T A A G T C A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G C A C A G T G T A C T G C A G A T C T C A G G A C T A C T G G T C A G A T C