Information for 2-ATGTATGG (Motif 9)

C G T A A C G T A C T G A C G T C G T A A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A A C G T C G T A A G T C C G T A A C G T
p-value:1e-4
log p-value:-9.518e+00
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif23.08%
Number of Background Sequences with motif397.8
Percentage of Background Sequences with motif0.65%
Average Position of motif in Targets71.7 +/- 31.9bp
Average Position of motif in Background101.3 +/- 88.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----ATGTATGG-----
NNTNNTGTCTGGNNTNG
A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--ATGTATGG--
TGATTTATGGCC
A C G T A C G T C G T A A C G T A C T G A C G T C G T A A C G T A C T G A C T G A C G T A C G T
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

MF0008.1_MADS_class/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--ATGTATGG
CCATATATGG
A C G T A C G T C G T A A C G T A C T G A C G T C G T A A C G T A C T G A C T G
G A T C A G T C G C T A C G A T C G T A C G A T C G T A G C A T C T A G C A T G

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:4
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----ATGTATGG--
AAATGATTTATGGCT
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A C G T A C T G A C T G A C G T A C G T
C T G A C G T A C G T A C G A T C T A G C G T A C G A T C G A T C A G T T C G A A G C T C A T G C T A G A G T C G A C T

PB0170.1_Sox17_2/Jaspar

Match Rank:5
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----ATGTATGG----
NTTNTATGAATGTGNNC
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

PBX2/MA1113.2/Jaspar

Match Rank:6
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----ATGTATGG-
NNTGATTTATGNN
A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A C G T A C T G A C T G A C G T
C G T A C T G A C G A T C T A G C G T A C G A T C G A T C A G T T C G A G A C T C A T G C T G A A G T C

SRF/MA0083.3/Jaspar

Match Rank:7
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----ATGTATGG---
TGACCATATATGGTCA
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A C G T A C T G A C T G A C G T A C G T A C G T
G C A T A C T G G T C A A T G C A G T C C G T A C G A T C T G A A C G T C G T A G C A T T A C G C T A G C A G T T G A C C G T A

Smad4/MA1153.1/Jaspar

Match Rank:8
Score:0.64
Offset:1
Orientation:forward strand
Alignment:ATGTATGG-
-TGTCTAGA
C G T A A C G T A C T G A C G T C G T A A C G T A C T G A C T G A C G T
A C G T G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:9
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--ATGTATGG
TGATKGATGR
A C G T A C G T C G T A A C G T A C T G A C G T C G T A A C G T A C T G A C T G
C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G

PB0178.1_Sox8_2/Jaspar

Match Rank:10
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------ATGTATGG
NNTNTCATGAATGT
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A C G T A C T G A C T G
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T