Information for 16-CAGGTCACCAGC (Motif 25)

A G T C C G T A A C T G A C T G A C G T A G T C C G T A A G T C A G T C C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T A C T G A C T G A C G T A C T G C G T A A G T C A G T C A C G T A C T G
p-value:1e-3
log p-value:-8.363e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets187.0 +/- 0.0bp
Average Position of motif in Background149.4 +/- 20.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CAGGTCACCAGC
AAGGTCAC----
A G T C C G T A A C T G A C T G A C G T A G T C C G T A A G T C A G T C C G T A A C T G A G T C
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CAGGTCACCAGC
CAAAGGTCAAGGG-
A C G T A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A A G T C A G T C C G T A A C T G A G T C
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CAGGTCACCAGC
-AGGTCA-----
A G T C C G T A A C T G A C T G A C G T A G T C C G T A A G T C A G T C C G T A A C T G A G T C
A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CAGGTCACCAGC
TRAGGTCA-----
A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A A G T C A G T C C G T A A C T G A G T C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:5
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CAGGTCACCAGC
TCTCAAAGGTCACCTG-
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A A G T C A G T C C G T A A C T G A G T C
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G A C G T

NR2C2(var.2)/MA1536.1/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CAGGTCACCAGC
GAGGTCAT----
A G T C C G T A A C T G A C T G A C G T A G T C C G T A A G T C A G T C C G T A A C T G A G T C
T C A G T C G A A C T G A C T G A C G T A G T C C T G A G C A T A C G T A C G T A C G T A C G T

NR2C1/MA1535.1/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CAGGTCACCAGC
CGAGGTCAC----
A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A A G T C A G T C C G T A A C T G A G T C
G T A C C T A G T C G A A C T G A C T G A C G T A T G C C T G A G A T C A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CAGGTCACCAGC
ATCAAGGTCA-----
A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A A G T C A G T C C G T A A C T G A G T C
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

CREB3/MA0638.1/Jaspar

Match Rank:9
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CAGGTCACCAGC
GTGCCACGTCATCA--
A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A A G T C A G T C C G T A A C T G A G T C
T C A G A G C T C A T G G T A C A T G C C G T A A G T C C T A G G A C T T G A C C T G A A G C T G T A C T C G A A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CAGGTCACCAGC
TCAAGGTCAN----
A C G T A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A A G T C A G T C C G T A A C T G A G T C
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T A C G T A C G T