Information for 20-TAGCATGAKS (Motif 29)

A C G T C G T A C T A G A G T C T C G A C G A T A C T G C G T A A C T G T A G C
Reverse Opposite:
A T C G T G A C A C G T A G T C C G T A A G C T C T A G A G T C C G A T T G C A
p-value:1e-4
log p-value:-1.146e+01
Information Content per bp:1.777
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif30.6
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets103.3 +/- 43.2bp
Average Position of motif in Background90.0 +/- 60.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.83
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5/MA0014.3/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TAGCATGAKS--
GAGCGTGACCCC
A C G T C G T A C T A G A G T C T C G A C G A T A C T G C G T A A C T G T A G C A C G T A C G T
T C A G C T G A T A C G A G T C T C A G G C A T T A C G C T G A T A G C A G T C G T A C A G T C

SIX1/MA1118.1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TAGCATGAKS
GTAACCTGATA
A C G T A C G T C G T A C T A G A G T C T C G A C G A T A C T G C G T A A C T G T A G C
C A T G C G A T G C T A C G T A G A T C G T A C G C A T C T A G C G T A A C G T G T C A

Pax2/MA0067.1/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TAGCATGAKS
--NCGTGACN
A C G T C G T A C T A G A G T C T C G A C G A T A C T G C G T A A C T G T A G C
A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T

TFAP2A/MA0003.4/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TAGCATGAKS----
NNGCCTGAGGCANN
A C G T C G T A C T A G A G T C T C G A C G A T A C T G C G T A A C T G T A G C A C G T A C G T A C G T A C G T
A C G T C A T G A T C G T A G C A T G C A G C T A T C G T C G A T C A G A C T G T A G C G T C A T C G A A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----TAGCATGAKS
GAGCACAGCAGGACA
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T A G A G T C T C G A C G A T A C T G C G T A A C T G T A G C
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TAGCATGAKS
ATGGGGTGAT-
A C G T A C G T C G T A C T A G A G T C T C G A C G A T A C T G C G T A A C T G T A G C
T C G A A G C T C A T G A C T G A T C G T A C G G A C T A T C G C G T A A G C T A C G T

TFAP2C(var.2)/MA0814.2/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TAGCATGAKS----
GGGCCTGAGGCGGG
A C G T C G T A C T A G A G T C T C G A C G A T A C T G C G T A A C T G T A G C A C G T A C G T A C G T A C G T
A C T G C A T G A T C G T A G C A T G C A G C T T A C G T G C A T A C G T A C G T A G C A T C G T C A G A T C G

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TAGCATGAKS-
GTGGCGTGACNG
A C G T A C G T C G T A C T A G A G T C T C G A C G A T A C T G C G T A A C T G T A G C A C G T
T C A G A C G T C A T G A C T G A T G C A T C G A C G T A T C G C T G A A G T C G A T C C A T G

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TAGCATGAKS-
GWAAYHTGABMC
A C G T A C G T C G T A C T A G A G T C T C G A C G A T A C T G C G T A A C T G T A G C A C G T
A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----TAGCATGAKS
CCACACAGCAGGAGA
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T A G A G T C T C G A C G A T A C T G C G T A A C T G T A G C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A