Information for 1-SCAGWCWG (Motif 36)

A T C G A G T C C G T A A C T G C G T A A G T C G C A T A T C G
Reverse Opposite:
A T G C C G T A A C T G C G A T A G T C A C G T A C T G A T G C
p-value:1e-3
log p-value:-6.996e+00
Information Content per bp:1.809
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif29.41%
Number of Background Sequences with motif3027.8
Percentage of Background Sequences with motif4.74%
Average Position of motif in Targets91.5 +/- 54.2bp
Average Position of motif in Background100.3 +/- 68.7bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:SCAGWCWG
CCAGACAG
A T C G A G T C C G T A A C T G C G T A A G T C G C A T A T C G
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:SCAGWCWG--
CCAGACRSVB
A T C G A G T C C G T A A C T G C G T A A G T C G C A T A T C G A C G T A C G T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:SCAGWCWG
BCAGACWA
A T C G A G T C C G T A A C T G C G T A A G T C G C A T A T C G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.78
Offset:-5
Orientation:forward strand
Alignment:-----SCAGWCWG----
CAAATCCAGACATCACA
A C G T A C G T A C G T A C G T A C G T A T C G A G T C C G T A A C T G C G T A A G T C G C A T A T C G A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---SCAGWCWG
ATGCCAGACN-
A C G T A C G T A C G T A T C G A G T C C G T A A C T G C G T A A G T C G C A T A T C G
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T

Smad4/MA1153.1/Jaspar

Match Rank:6
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-SCAGWCWG
TCTAGACA-
A C G T A T C G A G T C C G T A A C T G C G T A A G T C G C A T A T C G
A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T

POL002.1_INR/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:forward strand
Alignment:SCAGWCWG
TCAGTCTT
A T C G A G T C C G T A A C T G C G T A A G T C G C A T A T C G
C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:8
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----SCAGWCWG
AGGTGNCAGACAG
A C G T A C G T A C G T A C G T A C G T A T C G A G T C C G T A A C T G C G T A A G T C G C A T A T C G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----SCAGWCWG
AGGTGHCAGACA-
A C G T A C G T A C G T A C G T A C G T A T C G A G T C C G T A A C T G C G T A A G T C G C A T A T C G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer

Match Rank:10
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--SCAGWCWG--
RHHCAGAGAGGB
A C G T A C G T A T C G A G T C C G T A A C T G C G T A A G T C G C A T A T C G A C G T A C G T
T C A G G T C A G C T A A G T C C G T A A T C G T C G A T C A G C G T A A C T G A C T G A C T G