Information for 6-CTGAACTAGCCA (Motif 6)

A T G C C G A T A C T G C G T A C G T A A T G C A C G T C G T A A C T G A G T C A G T C C G T A
Reverse Opposite:
A C G T C T A G A C T G A G T C A C G T C G T A A T C G A C G T A C G T A G T C C G T A A T C G
p-value:1e-10
log p-value:-2.526e+01
Information Content per bp:1.906
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets86.2 +/- 65.2bp
Average Position of motif in Background140.0 +/- 53.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR1I3/MA1534.1/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTGAACTAGCCA
ATGAACTTT---
A T G C C G A T A C T G C G T A C G T A A T G C A C G T C G T A A C T G A G T C A G T C C G T A
C T G A G A C T T C A G G T C A G T C A A G T C A G C T G A C T G C A T A C G T A C G T A C G T

VDR/MA0693.2/Jaspar

Match Rank:2
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CTGAACTAGCCA
-TGAACTCA---
A T G C C G A T A C T G C G T A C G T A A T G C A C G T C G T A A C T G A G T C A G T C C G T A
A C G T A G C T C T A G G T C A T G C A T G A C G A C T A G T C C T G A A C G T A C G T A C G T

PH0168.1_Hnf1b/Jaspar

Match Rank:3
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CTGAACTAGCCA-
AGCTGTTAACTAGCCGT
A C G T A C G T A C G T A C G T A T G C C G A T A C T G C G T A C G T A A T G C A C G T C G T A A C T G A G T C A G T C C G T A A C G T
C G T A A C T G A G T C A C G T C T A G G C A T G A C T C G T A G C T A A G T C A G C T C G T A T C A G A G T C G A T C A T C G A G C T

HMBOX1/MA0895.1/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CTGAACTAGCCA
GTTAACTAGN--
A T G C C G A T A C T G C G T A C G T A A T G C A C G T C G T A A C T G A G T C A G T C C G T A
A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T A C G T A C G T

PH0040.1_Hmbox1/Jaspar

Match Rank:5
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CTGAACTAGCCA--
GANGTTAACTAGTTTNN
A C G T A C G T A C G T A T G C C G A T A C T G C G T A C G T A A T G C A C G T C G T A A C T G A G T C A G T C C G T A A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:6
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CTGAACTAGCCA
KCCAAAAATAGC--
A C G T A C G T A T G C C G A T A C T G C G T A C G T A A T G C A C G T C G T A A C T G A G T C A G T C C G T A
A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C A C G T A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CTGAACTAGCCA-
-TGAATTATGCAT
A T G C C G A T A C T G C G T A C G T A A T G C A C G T C G T A A C T G A G T C A G T C C G T A A C G T
A C G T C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T

POL004.1_CCAAT-box/Jaspar

Match Rank:8
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CTGAACTAGCCA----
----ACTAGCCAATCA
A T G C C G A T A C T G C G T A C G T A A T G C A C G T C G T A A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CTGAACTAGCCA
DCYAAAAATAGM--
A C G T A C G T A T G C C G A T A C T G C G T A C G T A A T G C A C G T C G T A A C T G A G T C A G T C C G T A
C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T A C G T

LBX1/MA0618.1/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CTGAACTAGCCA
-TTAATTAG---
A T G C C G A T A C T G C G T A C G T A A T G C A C G T C G T A A C T G A G T C A G T C C G T A
A C G T C G A T A G C T C G T A C G T A A G C T C G A T C T G A A T C G A C G T A C G T A C G T