Information for 7-AGGTCCAGGACC (Motif 7)

C G T A C A T G C T A G C G A T A G T C A T G C G C T A T A C G A C T G G C T A A G T C G A T C
Reverse Opposite:
C A T G A C T G C A G T A G T C A G T C C G A T A T C G A C T G C G T A A G T C G A T C G A C T
p-value:1e-4
log p-value:-1.107e+01
Information Content per bp:1.681
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif23.53%
Number of Background Sequences with motif589.8
Percentage of Background Sequences with motif0.92%
Average Position of motif in Targets92.8 +/- 45.7bp
Average Position of motif in Background102.6 +/- 66.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR2F1(var.3)/MA1538.1/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AGGTCCAGGACC--
AAGGTCATTGACCTT
A C G T C G T A C A T G C T A G C G A T A G T C A T G C G C T A T A C G A C T G G C T A A G T C G A T C A C G T A C G T
C T G A C T G A A C T G C T A G A C G T A G T C T C G A A C G T A G C T T C A G G T C A A G T C T G A C G A C T G A C T

NR2F6(var.3)/MA1539.1/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AGGTCCAGGACC--
AAGGTCACTGACCTT
A C G T C G T A C A T G C T A G C G A T A G T C A T G C G C T A T A C G A C T G G C T A A G T C G A T C A C G T A C G T
C T G A T C G A C A T G C A T G A C G T A G T C C T G A A T G C A G C T T C A G T G C A G T A C G T A C A G C T G A C T

NR4A2::RXRA/MA1147.1/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AGGTCCAGGACC--
GGGGTCAATGACCTN
A C G T C G T A C A T G C T A G C G A T A G T C A T G C G C T A T A C G A C T G G C T A A G T C G A T C A C G T A C G T
T C A G T C A G C A T G C A T G A C G T A T G C T C G A G C T A A G C T T C A G T C G A G T A C G T A C A G C T A G T C

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AGGTCCAGGACC
AGGTCAAGGTCA
C G T A C A T G C T A G C G A T A G T C A T G C G C T A T A C G A C T G G C T A A G T C G A T C
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

PB0200.1_Zfp187_2/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---AGGTCCAGGACC-
NNAGGGACAAGGGCNC
A C G T A C G T A C G T C G T A C A T G C T A G C G A T A G T C A T G C G C T A T A C G A C T G G C T A A G T C G A T C A C G T
A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C

NR1H4::RXRA/MA1146.1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AGGTCCAGGACC--
NAGGTCAATGACCTC
A C G T C G T A C A T G C T A G C G A T A G T C A T G C G C T A T A C G A C T G G C T A A G T C G A T C A C G T A C G T
T C G A T C G A C A T G C A T G A C G T A G T C T C G A C G T A G A C T T C A G T G C A G T A C G A T C A G C T A G T C

RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGGTCCAGGACC
AGGTCAAGGTCA
C G T A C A T G C T A G C G A T A G T C A T G C G C T A T A C G A C T G G C T A A G T C G A T C
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:8
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AGGTCCAGGACC-
NAGGTCANTGACCT
A C G T C G T A C A T G C T A G C G A T A G T C A T G C G C T A T A C G A C T G G C T A A G T C G A T C A C G T
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

Klf12/MA0742.1/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:forward strand
Alignment:AGGTCCAGGACC-----
--GACCACGCCCTTATT
C G T A C A T G C T A G C G A T A G T C A T G C G C T A T A C G A C T G G C T A A G T C G A T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G T C G A G T A C T A G C T G C A G T A C C T A G A G T C A G T C A G T C G C A T G C A T G C T A G C A T G C A T

ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AGGTCCAGGACC----
-GGGCGATGACCAYTC
C G T A C A T G C T A G C G A T A G T C A T G C G C T A T A C G A C T G G C T A A G T C G A T C A C G T A C G T A C G T A C G T
A C G T C T A G T A C G T C A G A G T C A C T G T G C A A G C T A C T G G T C A G T A C G A T C C T G A A G T C A C G T A T G C