Information for 4-TTTTAAGGTT (Motif 8)

A G C T A C G T C G A T C A G T G C T A C T G A C T A G A C T G A C G T C A G T
Reverse Opposite:
G T C A T G C A G T A C A G T C G A C T C G A T G T C A C G T A G T C A C T G A
p-value:1e-7
log p-value:-1.765e+01
Information Content per bp:1.839
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.10%
Number of Background Sequences with motif234.3
Percentage of Background Sequences with motif0.49%
Average Position of motif in Targets85.8 +/- 55.6bp
Average Position of motif in Background103.4 +/- 57.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0064.1_Hoxb9/Jaspar

Match Rank:1
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----TTTTAAGGTT--
NGANTTTTATGGCTCN
A C G T A C G T A C G T A C G T A G C T A C G T C G A T C A G T G C T A C T G A C T A G A C T G A C G T C A G T A C G T A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TTTTAAGGTT
TTTTATGGCB
A G C T A C G T C G A T C A G T G C T A C T G A C T A G A C T G A C G T C A G T
G C A T C G A T G C A T G A C T G C T A A G C T C A T G C T A G A T G C A G T C

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TTTTAAGGTT
TTTTATGGCM
A G C T A C G T C G A T C A G T G C T A C T G A C T A G A C T G A C G T C A G T
C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:4
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TTTTAAGGTT
DGWTTTATGRCN
A C G T A C G T A G C T A C G T C G A T C A G T G C T A C T G A C T A G A C T G A C G T C A G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

RUNX3/MA0684.2/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TTTTAAGGTT--
NNTTGAGGTTNN
A G C T A C G T C G A T C A G T G C T A C T G A C T A G A C T G A C G T C A G T A C G T A C G T
C T G A C G A T G A C T C G A T A C T G G C T A A C T G C T A G G A C T A G C T C G A T G C A T

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TTTTAAGGTT
NTTTTATDRG-
A C G T A G C T A C G T C G A T C A G T G C T A C T G A C T A G A C T G A C G T C A G T
C T A G G C A T A C G T G C A T G A C T C G T A G A C T C A T G C T A G A T C G A C G T

HOXA13/MA0650.2/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TTTTAAGGTT
GTTTTATTGGN
A C G T A G C T A C G T C G A T C A G T G C T A C T G A C T A G A C T G A C G T C A G T
C A T G C A G T A C G T A G C T A G C T C G T A A C G T A C G T C T A G A T C G A C T G

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TTTTAAGGTT
TTTAATTGCN
A G C T A C G T C G A T C A G T G C T A C T G A C T A G A C T G A C G T C A G T
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

HOXB13/MA0901.2/Jaspar

Match Rank:9
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TTTTAAGGTT-
NNATTTTATTGGNN
A C G T A C G T A C G T A G C T A C G T C G A T C A G T G C T A C T G A C T A G A C T G A C G T C A G T A C G T
C G T A C G T A C G T A C G A T C G A T C G A T G C A T T G C A G C A T C G A T C T A G C A T G G C A T G C A T

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TTTTAAGGTT
TTTTATTRGN
A G C T A C G T C G A T C A G T G C T A C T G A C T A G A C T G A C G T C A G T
C G A T A C G T A C G T G C A T C G T A G A C T C A G T C T A G A T C G G A T C