Information for 7-GAGACGGTCC (Motif 19)

A C T G C G T A A C T G C G T A A G T C A C T G A C T G A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A A G T C A G T C A C T G A C G T A G T C A C G T A G T C
p-value:1e-3
log p-value:-7.807e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif7.69%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets86.0 +/- 0.0bp
Average Position of motif in Background96.1 +/- 33.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GAGACGGTCC
CCAGACAG---
A C G T A C T G C G T A A C T G C G T A A G T C A C T G A C T G A C G T A G T C A G T C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:2
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GAGACGGTCC--
--TWVGGTCCGC
A C T G C G T A A C T G C G T A A G T C A C T G A C T G A C G T A G T C A G T C A C G T A C G T
A C G T A C G T A G C T C G A T T A C G A T C G A T C G C A G T A G T C A G T C A C T G T A G C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GAGACGGTCC
CCAGACRSVB-
A C G T A C T G C G T A A C T G C G T A A G T C A C T G A C T G A C G T A G T C A G T C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

PRDM4/MA1647.1/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GAGACGGTCC
NAGAAACAGNN-
A C G T A C G T A C T G C G T A A C T G C G T A A G T C A C T G A C T G A C G T A G T C A G T C
C G A T C G T A C A T G C G T A T C G A C G T A A G T C G C T A A T C G G T C A G A T C A C G T

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:5
Score:0.56
Offset:-7
Orientation:forward strand
Alignment:-------GAGACGGTCC
CTACTTGGATACGGAAT
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G C G T A A G T C A C T G A C T G A C G T A G T C A G T C
A T G C A C G T T C G A A T G C C A G T G A C T T C A G A C T G C G T A A C G T C G T A G A T C T A C G T A C G C G T A C G T A G C A T

HES6/MA1493.1/Jaspar

Match Rank:6
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GAGACGGTCC
AACACGTGCC
A C T G C G T A A C T G C G T A A G T C A C T G A C T G A C G T A G T C A G T C
C T G A C G T A A G T C T G C A A T G C T C A G G C A T A T C G A T G C T G A C

PB0045.1_Myb_1/Jaspar

Match Rank:7
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---GAGACGGTCC----
NNNNTAACGGTTNNNAN
A C G T A C G T A C G T A C T G C G T A A C T G C G T A A G T C A C T G A C T G A C G T A G T C A G T C A C G T A C G T A C G T A C G T
G C T A C T G A C G T A C G T A G A C T C T G A C G T A A G T C A T C G C A T G G A C T G A C T C A G T G T A C G T A C G C T A C G A T

HES5/MA0821.1/Jaspar

Match Rank:8
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-GAGACGGTCC-
CGGCACGTGCCA
A C G T A C T G C G T A A C T G C G T A A G T C A C T G A C T G A C G T A G T C A G T C A C G T
G A T C T C A G T C A G A G T C C T G A G A T C C T A G A G C T A C T G A G T C A G T C C T G A

ZNF684/MA1600.1/Jaspar

Match Rank:9
Score:0.50
Offset:1
Orientation:forward strand
Alignment:GAGACGGTCC---------
-ATACAGTCCACCCCTTTA
A C T G C G T A A C T G C G T A A G T C A C T G A C T G A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T G A A G C T T C G A A G T C C G T A A T C G A C G T T A G C G A T C C G T A A T G C T G A C A G T C A G T C G C A T G A C T C A G T T C G A

POL013.1_MED-1/Jaspar

Match Rank:10
Score:0.50
Offset:5
Orientation:forward strand
Alignment:GAGACGGTCC-
-----GCTCCG
A C T G C G T A A C T G C G T A A G T C A C T G A C T G A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G