Information for 16-GCCCAATAAC (Motif 35)

A C T G A G T C A G T C A G T C C G T A C G T A A C G T C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T C G T A A C G T A C G T A C T G A C T G A C T G A G T C
p-value:1e-3
log p-value:-7.080e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif12.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets107.0 +/- 0.0bp
Average Position of motif in Background116.9 +/- 85.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD13/MA0909.2/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GCCCAATAAC--
-CCCAATAAAAC
A C T G A G T C A G T C A G T C C G T A C G T A A C G T C G T A C G T A A G T C A C G T A C G T
A C G T T A G C T A G C A G T C G T C A C T G A C G A T C G T A C T G A G T C A T G C A T G A C

HOXA13/MA0650.2/Jaspar

Match Rank:2
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GCCCAATAAC--
-CCCAATAAAAC
A C T G A G T C A G T C A G T C C G T A C G T A A C G T C G T A C G T A A G T C A C G T A C G T
A C G T T G A C T A G C A G T C G T C A C G T A A C G T C T G A C T G A C G T A G T C A G T A C

NFYC/MA1644.1/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCCCAATAAC-
AGCCAATCAGA
A C T G A G T C A G T C A G T C C G T A C G T A A C G T C G T A C G T A A G T C A C G T
T C G A C T A G A G T C G T A C G C T A T C G A G A C T T A G C T C G A T A C G T G C A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:4
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GCCCAATAAC-
-CCYMATAAAA
A C T G A G T C A G T C A G T C C G T A C G T A A C G T C G T A C G T A A G T C A C G T
A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

PH0057.1_Hoxb13/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GCCCAATAAC-----
AACCCAATAAAATTCG
A C G T A C T G A G T C A G T C A G T C C G T A C G T A A C G T C G T A C G T A A G T C A C G T A C G T A C G T A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

NFYA/MA0060.3/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GCCCAATAAC-
AACCAATCAGA
A C T G A G T C A G T C A G T C C G T A C G T A A C G T C G T A C G T A A G T C A C G T
T C G A C T G A A G T C G A T C G C T A T C G A G A C T T A G C T C G A T A C G T G C A

PB0133.1_Hic1_2/Jaspar

Match Rank:7
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------GCCCAATAAC
GGGTGTGCCCAAAAGG
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G T C C G T A C G T A A C G T C G T A C G T A A G T C
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:8
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GCCCAATAAC
ACTAGCCAATCA-
A C G T A C G T A C G T A C T G A G T C A G T C A G T C C G T A C G T A A C G T C G T A C G T A A G T C
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

EN2/MA0642.1/Jaspar

Match Rank:9
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCCCAATAAC-
-CCCAATTAGC
A C T G A G T C A G T C A G T C C G T A C G T A A C G T C G T A C G T A A G T C A C G T
A C G T T A G C A T G C A G T C T G C A T G C A A C G T A G C T C T G A T A C G A T G C

HOXB13/MA0901.2/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCCCAATAAC----
AACCAATAAAATTT
A C T G A G T C A G T C A G T C C G T A C G T A A C G T C G T A C G T A A G T C A C G T A C G T A C G T A C G T
C G T A C G T A G T A C G A T C G C T A C G T A A C G T C G T A G C T A G C T A G C T A G C A T G C A T G C A T