Information for 2-AAAGCACA (Motif 36)

C G T A C G T A C G T A A C T G A G T C C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T A C T G A G T C A C G T C G A T A C G T
p-value:1e-2
log p-value:-5.502e+00
Information Content per bp:1.949
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif1048.6
Percentage of Background Sequences with motif1.24%
Average Position of motif in Targets115.0 +/- 26.6bp
Average Position of motif in Background105.7 +/- 81.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-AAAGCACA-------
CGAAGCACACAAAATA
A C G T C G T A C G T A C G T A A C T G A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:2
Score:0.75
Offset:0
Orientation:forward strand
Alignment:AAAGCACA--
AAACCACANN
C G T A C G T A C G T A A C T G A G T C C G T A A G T C C G T A A C G T A C G T
G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-AAAGCACA-
NAAACCACAG
A C G T C G T A C G T A C G T A A C T G A G T C C G T A A G T C C G T A A C G T
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:AAAGCACA--
AAACCACAGC
C G T A C G T A C G T A A C T G A G T C C G T A A G T C C G T A A C G T A C G T
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C

RUNX1/MA0002.2/Jaspar

Match Rank:5
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:AAAGCACA---
AAACCACAGAN
C G T A C G T A C G T A A C T G A G T C C G T A A G T C C G T A A C G T A C G T A C G T
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:6
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-AAAGCACA---
NWAACCACADNN
A C G T C G T A C G T A C G T A A C T G A G T C C G T A A G T C C G T A A C G T A C G T A C G T
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AAAGCACA-
CCAGGAACAG
A C G T C G T A C G T A C G T A A C T G A G T C C G T A A G T C C G T A A C G T
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

PB0130.1_Gm397_2/Jaspar

Match Rank:8
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AAAGCACA-------
AGCGGCACACACGCAA
A C G T C G T A C G T A C G T A A C T G A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

ZNF317/MA1593.1/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AAAGCACA--
TAACAGCAGACT
A C G T A C G T C G T A C G T A C G T A A C T G A G T C C G T A A G T C C G T A A C G T A C G T
C G A T T C G A C G T A T G A C C G T A C T A G G T A C C G T A C T A G G C T A G A T C G C A T

Gfi1b/MA0483.1/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AAAGCACA---
AAATCACAGCA
C G T A C G T A C G T A A C T G A G T C C G T A A G T C C G T A A C G T A C G T A C G T
T G C A C G T A C T G A A G C T A G T C G C T A T A G C C G T A C T A G G A T C G C T A