Information for 21-TCATAAAAATCA (Motif 27)

A C G T A G T C C G T A A C G T C G T A G T C A C G T A G T C A C G T A A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A
p-value:1e-5
log p-value:-1.155e+01
Information Content per bp:1.949
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif9.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets88.0 +/- 29.0bp
Average Position of motif in Background77.3 +/- 51.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC10/MA0905.1/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TCATAAAAATCA
GTCGTAAAAT---
A C G T A C G T A G T C C G T A A C G T C G T A G T C A C G T A G T C A C G T A A C G T A G T C C G T A
T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T A C G T A C G T A C G T

Hoxa11/MA0911.1/Jaspar

Match Rank:2
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--TCATAAAAATCA
GGTCGTAAAATT--
A C G T A C G T A C G T A G T C C G T A A C G T C G T A G T C A C G T A G T C A C G T A A C G T A G T C C G T A
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T A C G T A C G T

PH0046.1_Hoxa10/Jaspar

Match Rank:3
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----TCATAAAAATCA
TAGGTAATAAAATTCA
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T C G T A G T C A C G T A G T C A C G T A A C G T A G T C C G T A
C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TCATAAAAATCA
GTCATAAAAN---
A C G T A C G T A G T C C G T A A C G T C G T A G T C A C G T A G T C A C G T A A C G T A G T C C G T A
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:5
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----TCATAAAAATCA
AGAGCCATAAAATTCG
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T C G T A G T C A C G T A G T C A C G T A A C G T A G T C C G T A
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

HOXD11/MA0908.1/Jaspar

Match Rank:6
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TCATAAAAATCA
GTCGTAAAAA---
A C G T A C G T A G T C C G T A A C G T C G T A G T C A C G T A G T C A C G T A A C G T A G T C C G T A
T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A A C G T A C G T A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:7
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----TCATAAAAATCA
AAAGCTCGTAAAATTT-
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T C G T A G T C A C G T A G T C A C G T A A C G T A G T C C G T A
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:8
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TCATAAAAATCA
GGTAATAAAAA---
A C G T A C G T A C G T A G T C C G T A A C G T C G T A G T C A C G T A G T C A C G T A A C G T A G T C C G T A
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T A C G T A C G T

HOXB9/MA1503.1/Jaspar

Match Rank:9
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TCATAAAAATCA
GTCGTAAAAT---
A C G T A C G T A G T C C G T A A C G T C G T A G T C A C G T A G T C A C G T A A C G T A G T C C G T A
T C A G A G C T A G T C T C A G A C G T G C T A C G T A G T C A G C T A G A C T A C G T A C G T A C G T

HOXD10/MA1506.1/Jaspar

Match Rank:10
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TCATAAAAATCA
GGTCGTAAAAC---
A C G T A C G T A C G T A G T C C G T A A C G T C G T A G T C A C G T A G T C A C G T A A C G T A G T C C G T A
T C A G T C A G A G C T G T A C T C A G A C G T C G T A C G T A G T C A G C T A G A T C A C G T A C G T A C G T