Information for 2-TCGTAATC (Motif 40)

A C G T A G T C A C T G A C G T C G T A C G T A A C G T A G T C
Reverse Opposite:
A C T G C G T A A C G T A C G T C G T A A G T C A C T G C G T A
p-value:1e-2
log p-value:-5.405e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif39.9
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets137.0 +/- 0.0bp
Average Position of motif in Background96.3 +/- 76.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA9/MA0594.2/Jaspar

Match Rank:1
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-TCGTAATC-
GTCGTAAACG
A C G T A C G T A G T C A C T G A C G T C G T A C G T A A C G T A G T C A C G T
T C A G G A C T G T A C T C A G A G C T G C T A G C T A G C T A G A T C T A C G

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:2
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:TCGTAATC--
--YTAATCCY
A C G T A G T C A C T G A C G T C G T A C G T A A C G T A G T C A C G T A C G T
A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C

OTX1/MA0711.1/Jaspar

Match Rank:3
Score:0.73
Offset:2
Orientation:forward strand
Alignment:TCGTAATC--
--TTAATCCG
A C G T A G T C A C T G A C G T C G T A C G T A A C G T A G T C A C G T A C G T
A C G T A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G

GSC2/MA0891.1/Jaspar

Match Rank:4
Score:0.72
Offset:1
Orientation:forward strand
Alignment:TCGTAATC---
-CCTAATCCGC
A C G T A G T C A C T G A C G T C G T A C G T A A C G T A G T C A C G T A C G T A C G T
A C G T T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C

GSC/MA0648.1/Jaspar

Match Rank:5
Score:0.71
Offset:1
Orientation:forward strand
Alignment:TCGTAATC---
-GCTAATCCCC
A C G T A G T C A C T G A C G T C G T A C G T A A C G T A G T C A C G T A C G T A C G T
A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C

PB0185.1_Tcf1_2/Jaspar

Match Rank:6
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:TCGTAATC-------
-NNTAATCCNGNCNN
A C G T A G T C A C T G A C G T C G T A C G T A A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G A T C G T A C G C A T T G C A G T C A G A C T G T A C A G T C T C A G A T C G C T A G A G T C T G C A C G T A

PITX2/MA1547.1/Jaspar

Match Rank:7
Score:0.71
Offset:2
Orientation:forward strand
Alignment:TCGTAATC--
--ATAATCCC
A C G T A G T C A C T G A C G T C G T A C G T A A C G T A G T C A C G T A C G T
A C G T A C G T G T C A C G A T C T G A C G T A A C G T A G T C A G T C T G A C

PITX1/MA0682.2/Jaspar

Match Rank:8
Score:0.70
Offset:2
Orientation:forward strand
Alignment:TCGTAATC--
--CTAATCCC
A C G T A G T C A C T G A C G T C G T A C G T A A C G T A G T C A C G T A C G T
A C G T A C G T G A T C A C G T C G T A C G T A A C G T G T A C A G T C G T A C

PITX3/MA0714.1/Jaspar

Match Rank:9
Score:0.70
Offset:1
Orientation:forward strand
Alignment:TCGTAATC--
-CTTAATCCC
A C G T A G T C A C T G A C G T C G T A C G T A A C G T A G T C A C G T A C G T
A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:10
Score:0.69
Offset:1
Orientation:forward strand
Alignment:TCGTAATC---
-NYTAATCCYB
A C G T A G T C A C T G A C G T C G T A C G T A A C G T A G T C A C G T A C G T A C G T
A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T