Information for 13-ATTGTCAA (Motif 31)

C G T A A C G T A C G T A C T G A C G T A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G C G T A A G T C C G T A C G T A A C G T
p-value:1e-2
log p-value:-5.837e+00
Information Content per bp:1.530
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.33%
Number of Background Sequences with motif270.2
Percentage of Background Sequences with motif0.56%
Average Position of motif in Targets76.7 +/- 50.9bp
Average Position of motif in Background98.4 +/- 55.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17/MA0078.1/Jaspar

Match Rank:1
Score:0.81
Offset:-3
Orientation:forward strand
Alignment:---ATTGTCAA
CTCATTGTC--
A C G T A C G T A C G T C G T A A C G T A C G T A C T G A C G T A G T C C G T A C G T A
G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:2
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:ATTGTCAA
-NTGTCAN
C G T A A C G T A C G T A C T G A C G T A G T C C G T A C G T A
A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:3
Score:0.76
Offset:1
Orientation:forward strand
Alignment:ATTGTCAA-
-YTGWCADY
C G T A A C G T A C G T A C T G A C G T A G T C C G T A C G T A A C G T
A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C

SRY/MA0084.1/Jaspar

Match Rank:4
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:ATTGTCAA-
ATTGTTTAN
C G T A A C G T A C G T A C T G A C G T A G T C C G T A C G T A A C G T
G C T A A G C T A C G T C T A G C G A T C G A T G C A T G C T A G T A C

MEIS3/MA0775.1/Jaspar

Match Rank:5
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:ATTGTCAA
CCTGTCAA
C G T A A C G T A C G T A C T G A C G T A G T C C G T A C G T A
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:6
Score:0.74
Offset:2
Orientation:forward strand
Alignment:ATTGTCAA--
--TGTCANYT
C G T A A C G T A C G T A C T G A C G T A G T C C G T A C G T A A C G T A C G T
A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

PB0165.1_Sox11_2/Jaspar

Match Rank:7
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---ATTGTCAA---
AAAATTGTTATGAA
A C G T A C G T A C G T C G T A A C G T A C G T A C T G A C G T A G T C C G T A C G T A A C G T A C G T A C G T
C G T A C T G A C T G A C T G A A C G T G A C T T C A G C G A T G A C T G C T A C A G T T C A G C T G A C G T A

SOX13/MA1120.1/Jaspar

Match Rank:8
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----ATTGTCAA
NNCCATTGTNN-
A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C T G A C G T A G T C C G T A C G T A
C G A T A C T G A G T C G A T C C G T A G A C T C G A T T C A G G A C T A G C T G A C T A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:9
Score:0.71
Offset:0
Orientation:forward strand
Alignment:ATTGTCAA
ATTGTT--
C G T A A C G T A C G T A C T G A C G T A G T C C G T A C G T A
G C T A A C G T G A C T C T A G G C A T A G C T A C G T A C G T

Sox5/MA0087.1/Jaspar

Match Rank:10
Score:0.71
Offset:0
Orientation:forward strand
Alignment:ATTGTCAA
ATTGTTA-
C G T A A C G T A C G T A C T G A C G T A G T C C G T A C G T A
C G T A A C G T A C G T C T A G A G C T G A C T C G A T A C G T