Information for 2-GGTAARMCCARC (Motif 3)

A T C G A C T G G C A T G T C A C G T A T C A G G T C A G T A C G T A C C G T A C T G A A G T C
Reverse Opposite:
C T A G G A C T A C G T A C T G C A T G C A G T A G T C C G A T A C G T C G T A G T A C A T G C
p-value:1e-6
log p-value:-1.410e+01
Information Content per bp:1.658
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif45.45%
Number of Background Sequences with motif1476.8
Percentage of Background Sequences with motif1.78%
Average Position of motif in Targets90.2 +/- 53.3bp
Average Position of motif in Background103.1 +/- 83.1bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF449/MA1656.1/Jaspar

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GGTAARMCCARC---
-CCAAGCCCAACCAG
A T C G A C T G G C A T G T C A C G T A T C A G G T C A G T A C G T A C C G T A C T G A A G T C A C G T A C G T A C G T
A C G T G T A C T G A C T G C A G C T A C T A G T A G C G T A C G T A C G C T A C T G A T G A C G T A C G T C A T A C G

REL/MA0101.1/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GGTAARMCCARC
GGAAANCCCC--
A T C G A C T G G C A T G T C A C G T A T C A G G T C A G T A C G T A C C G T A C T G A A G T C
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GGTAARMCCARC
GGAAATCCCC--
A T C G A C T G G C A T G T C A C G T A T C A G G T C A G T A C G T A C C G T A C T G A A G T C
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GGTAARMCCARC
GGAAATTCCC--
A T C G A C T G G C A T G T C A C G T A T C A G G T C A G T A C G T A C C G T A C T G A A G T C
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GGTAARMCCARC
GGGAAATCCCCN-
A C G T A T C G A C T G G C A T G T C A C G T A T C A G G T C A G T A C G T A C C G T A C T G A A G T C
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GGTAARMCCARC-
-GWAAYHTGAKMC
A T C G A C T G G C A T G T C A C G T A T C A G G T C A G T A C G T A C C G T A C T G A A G T C A C G T
A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GGTAARMCCARC
GGAAATTCCC--
A T C G A C T G G C A T G T C A C G T A T C A G G T C A G T A C G T A C C G T A C T G A A G T C
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GGTAARMCCARC
--AAACCACAGC
A T C G A C T G G C A T G T C A C G T A T C A G G T C A G T A C G T A C C G T A C T G A A G T C
A C G T A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GGTAARMCCARC-----
CATAAGACCACCATTAC
A T C G A C T G G C A T G T C A C G T A T C A G G T C A G T A C G T A C C G T A C T G A A G T C A C G T A C G T A C G T A C G T A C G T
A G T C C G A T C A G T C T G A T G C A A C T G G T C A G A T C A T G C G T C A G A T C G A T C G C T A A C G T C A G T C T G A A G C T

NFATC3/MA0625.1/Jaspar

Match Rank:10
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---GGTAARMCCARC
AATGGAAAAT-----
A C G T A C G T A C G T A T C G A C T G G C A T G T C A C G T A T C A G G T C A G T A C G T A C C G T A C T G A A G T C
C G T A C T G A G A C T T A C G C A T G T C G A C G T A G C T A C T G A G C A T A C G T A C G T A C G T A C G T A C G T