Information for 5-YRGYCWMTCTAK (Motif 6)

A G T C C T G A A C T G A G T C A G T C C G T A G T A C A G C T A G T C A C G T C G T A A C T G
Reverse Opposite:
G T A C A C G T C G T A A C T G C T G A A C T G C G A T A C T G C T A G A G T C A G C T C T A G
p-value:1e-4
log p-value:-1.149e+01
Information Content per bp:1.809
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif30.00%
Number of Background Sequences with motif353.9
Percentage of Background Sequences with motif0.45%
Average Position of motif in Targets69.0 +/- 25.0bp
Average Position of motif in Background111.2 +/- 80.7bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:YRGYCWMTCTAK
-AGCCACTCAAG
A G T C C T G A A C T G A G T C A G T C C G T A G T A C A G C T A G T C A C G T C G T A A C T G
A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:2
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:YRGYCWMTCTAK
--NSCACTYVAV
A G T C C T G A A C T G A G T C A G T C C G T A G T A C A G C T A G T C A C G T C G T A A C T G
A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

NKX2-2/MA1645.1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:YRGYCWMTCTAK--
TAACCACTCAAGAA
A G T C C T G A A C T G A G T C A G T C C G T A G T A C A G C T A G T C A C G T C G T A A C T G A C G T A C G T
G A C T G C T A C G T A T G A C G A T C G C T A G T A C G C A T A T G C G T C A T C G A T C A G G C T A G C T A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:YRGYCWMTCTAK
-AASCACTCAA-
A G T C C T G A A C T G A G T C A G T C C G T A G T A C A G C T A G T C A C G T C G T A A C T G
A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-YRGYCWMTCTAK
SCTGTCAVTCAV-
A C G T A G T C C T G A A C T G A G T C A G T C C G T A G T A C A G C T A G T C A C G T C G T A A C T G
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-YRGYCWMTCTAK
NCTGTCAATCAN-
A C G T A G T C C T G A A C T G A G T C A G T C C G T A G T A C A G C T A G T C A C G T C G T A A C T G
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T

NKX2-5/MA0063.2/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:forward strand
Alignment:YRGYCWMTCTAK-
--ACCACTCAAAA
A G T C C T G A A C T G A G T C A G T C C G T A G T A C A G C T A G T C A C G T C G T A A C T G A C G T
A C G T A C G T T C G A T G A C G A T C C T G A G A T C G C A T G A T C C G T A G C T A T C G A G C T A

PKNOX1/MA0782.2/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---YRGYCWMTCTAK
NNGCTGTCACTCANN
A C G T A C G T A C G T A G T C C T G A A C T G A G T C A G T C C G T A G T A C A G C T A G T C A C G T C G T A A C T G
G A C T T C G A A T C G T G A C G C A T C T A G G A C T T A G C G C T A T G A C G A C T A G T C G C T A C G T A G C T A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:YRGYCWMTCTAK
--RSCACTYRAG
A G T C C T G A A C T G A G T C A G T C C G T A G T A C A G C T A G T C A C G T C G T A A C T G
A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

PBX3/MA1114.1/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----YRGYCWMTCTAK-
NNNCCTGTCACTCANNN
A C G T A C G T A C G T A C G T A G T C C T G A A C T G A G T C A G T C C G T A G T A C A G C T A G T C A C G T C G T A A C T G A C G T
T A G C A G T C T A C G A T G C T G A C G A C T A T C G G A C T A T G C G T C A T G A C G C A T A G T C G C T A T G A C T G A C A T G C