Information for 20-GAGTGCACTC (Motif 28)

A C T G C G T A A C T G A C G T A C T G A G T C C G T A A G T C A C G T A G T C
Reverse Opposite:
A C T G C G T A A C T G A C G T A C T G A G T C C G T A A G T C A C G T A G T C
p-value:1e-2
log p-value:-6.859e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif6.67%
Number of Background Sequences with motif5.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets194.5 +/- 0.5bp
Average Position of motif in Background133.4 +/- 39.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MSANTD3/MA1523.1/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGCACTC
GTGAGTGNAC--
A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C C G T A A G T C A C G T A G T C
C A T G C A G T C T A G C G T A C T A G G C A T C T A G A C G T T G C A T A G C A C G T A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GAGTGCACTC----
TACATGTGCACATAAAA
A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C C G T A A G T C A C G T A G T C A C G T A C G T A C G T A C G T
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGCACTC
TTGAGTGSTT--
A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C C G T A A G T C A C G T A G T C
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GAGTGCACTC--
AGATGCAATCCC
A C T G C G T A A C T G A C G T A C T G A G T C C G T A A G T C A C G T A G T C A C G T A C G T
T C G A C T A G C T G A A G C T A C T G G T A C G T C A T G C A A G C T T G A C T A G C A G T C

PB0026.1_Gm397_1/Jaspar

Match Rank:5
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GAGTGCACTC---
NNGTATGTGCACATNNN
A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C C G T A A G T C A C G T A G T C A C G T A C G T A C G T
C T G A G T A C C A T G C A G T T C G A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A G C A T G T A C C G A T C A T G

VDR/MA0693.2/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GAGTGCACTC
TGAGTTCA---
A C G T A C T G C G T A A C T G A C G T A C T G A G T C C G T A A G T C A C G T A G T C
G A C T T C A G C T G A A C T G A C G T C A G T G A T C C T G A A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GAGTGCACTC
BTBRAGTGSN---
A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C C G T A A G T C A C G T A G T C
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGCACTC
CTTGAGTGGCT--
A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C C G T A A G T C A C G T A G T C
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGCACTC----
NNNNTGAGCACTGTNNG
A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C C G T A A G T C A C G T A G T C A C G T A C G T A C G T A C G T
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGCACTC
CTYRAGTGSY---
A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C C G T A A G T C A C G T A G T C
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T A C G T