| p-value: | 1e-2 |
| log p-value: | -6.828e+00 |
| Information Content per bp: | 1.530 |
| Number of Target Sequences with motif | 1.0 |
| Percentage of Target Sequences with motif | 16.67% |
| Number of Background Sequences with motif | 33.2 |
| Percentage of Background Sequences with motif | 0.02% |
| Average Position of motif in Targets | 184.0 +/- 0.0bp |
| Average Position of motif in Background | 128.5 +/- 109.3bp |
| Strand Bias (log2 ratio + to - strand density) | 10.0 |
| Multiplicity (# of sites on avg that occur together) | 1.00 |
| Motif File: | file (matrix) reverse opposite |
| SVG Files for Logos: | forward logo reverse opposite |
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer
| Match Rank: | 1 |
| Score: | 0.72 |
| Offset: | 0 |
| Orientation: | forward strand |
| Alignment: | GTCATACATC-- GYCATCMATCAT |
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PBX2/MA1113.2/Jaspar
| Match Rank: | 2 |
| Score: | 0.70 |
| Offset: | 0 |
| Orientation: | forward strand |
| Alignment: | GTCATACATC--- GTCATAAATCATT |
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|
MEIS2(var.2)/MA1640.1/Jaspar
| Match Rank: | 3 |
| Score: | 0.70 |
| Offset: | -1 |
| Orientation: | reverse strand |
| Alignment: | -GTCATACATC---- NNCCATAAATCATNN |
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|
|
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer
| Match Rank: | 4 |
| Score: | 0.69 |
| Offset: | -1 |
| Orientation: | forward strand |
| Alignment: | -GTCATACATC- GGCCATAAATCA |
|
|
|
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer
| Match Rank: | 5 |
| Score: | 0.68 |
| Offset: | 1 |
| Orientation: | reverse strand |
| Alignment: | GTCATACATC- -YCATCMATCA |
|
|
|
MEIS1(var.2)/MA1639.1/Jaspar
| Match Rank: | 6 |
| Score: | 0.66 |
| Offset: | 0 |
| Orientation: | forward strand |
| Alignment: | GTCATACATC--- GTCATCAATCATT |
|
|
|
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer
| Match Rank: | 7 |
| Score: | 0.65 |
| Offset: | -1 |
| Orientation: | reverse strand |
| Alignment: | -GTCATACATC- RGCCATYAATCA |
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|
|
PH0065.1_Hoxc10/Jaspar
| Match Rank: | 8 |
| Score: | 0.64 |
| Offset: | -4 |
| Orientation: | forward strand |
| Alignment: | ----GTCATACATC-- TAAAGTCGTAAAACGT |
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|
|
PH0134.1_Pbx1/Jaspar
| Match Rank: | 9 |
| Score: | 0.64 |
| Offset: | 1 |
| Orientation: | forward strand |
| Alignment: | GTCATACATC-------- -TCACCCATCAATAAACA |
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|
|
CDX1/MA0878.2/Jaspar
| Match Rank: | 10 |
| Score: | 0.63 |
| Offset: | -1 |
| Orientation: | forward strand |
| Alignment: | -GTCATACATC GGCCATAAAAC |
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