Information for 14-AGGCAGACAT (Motif 25)

C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G A C G T A G T C A C G T A C T G A G T C A G T C A C G T
p-value:1e-5
log p-value:-1.363e+01
Information Content per bp:1.530
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif26.2
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets113.1 +/- 44.6bp
Average Position of motif in Background82.0 +/- 55.9bp
Strand Bias (log2 ratio + to - strand density)3.3
Multiplicity (# of sites on avg that occur together)1.57
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:AGGCAGACAT--
--CCAGACRSVB
C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---AGGCAGACAT----
CAAATCCAGACATCACA
A C G T A C G T A C G T C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

ZFP42/MA1651.1/Jaspar

Match Rank:3
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---AGGCAGACAT--------
NNNNGGCAGCCATTTTGNNNN
A C G T A C G T A C G T C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G T C T A C G T A C G C T G A T C A G C T A G T A G C T G C A C A T G T G A C A G T C T C G A G A C T A G C T G C A T G A C T C A T G C A T G C G T A C G T A T A G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:AGGCAGACAT
--CCAGACAG
C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C G T
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:AGGCAGACAT
--BCAGACWA
C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C G T
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AGGCAGACAT
AGGTGHCAGACA-
A C G T A C G T A C G T C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---AGGCAGACAT
AGGTGNCAGACAG
A C G T A C G T A C G T C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

PB0208.1_Zscan4_2/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGGCAGACAT----
CGAAGCACACAAAATA
A C G T A C G T C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AGGCAGACAT
ATGCCAGACN-
A C G T C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C G T
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AGGCAGACAT----
AGCGGCACACACGCAA
A C G T A C G T C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A