Information for 5-TCCTTTHTGAHY (Motif 5)

A C G T T A G C A G T C A G C T A G C T C A G T G C T A C A G T A C T G C G T A G C T A G A C T
Reverse Opposite:
C T G A C A G T G A C T A G T C G C T A C G A T G C T A C T G A C T G A T C A G A T C G T C G A
p-value:1e-4
log p-value:-1.018e+01
Information Content per bp:1.616
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif3884.2
Percentage of Background Sequences with motif4.49%
Average Position of motif in Targets112.2 +/- 69.6bp
Average Position of motif in Background100.2 +/- 77.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC10/MA0905.1/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TCCTTTHTGAHY
-NTTTTACGAC-
A C G T T A G C A G T C A G C T A G C T C A G T G C T A C A G T A C T G C G T A G C T A G A C T
A C G T C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C A C G T

ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TCCTTTHTGAHY
VCCTCTCTGDDY
A C G T T A G C A G T C A G C T A G C T C A G T G C T A C A G T A C T G C G T A G C T A G A C T
T G A C T A G C G T A C G C A T A G T C A C G T A T G C C G A T T A C G C G A T C A G T A G T C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TCCTTTHTGAHY
DGWTTTATGRCN
A C G T T A G C A G T C A G C T A G C T C A G T G C T A C A G T A C T G C G T A G C T A G A C T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

PH0065.1_Hoxc10/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TCCTTTHTGAHY---
ANNTTTTACGACNTNN
A C G T A C G T T A G C A G T C A G C T A G C T C A G T G C T A C A G T A C T G C G T A G C T A G A C T A C G T A C G T A C G T
T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A

PH0066.1_Hoxc11/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TCCTTTHTGAHY---
NNNTTTTACGACNTTN
A C G T A C G T T A G C A G T C A G C T A G C T C A G T G C T A C A G T A C T G C G T A G C T A G A C T A C G T A C G T A C G T
G T A C G A C T C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C T G A

HOXB9/MA1503.1/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TCCTTTHTGAHY
-NTTTTACGAC-
A C G T T A G C A G T C A G C T A G C T C A G T G C T A C A G T A C T G C G T A G C T A G A C T
A C G T C T G A C G A T C A G T A C G T C G A T G T C A A G T C A C T G C T G A A G T C A C G T

HOXD10/MA1506.1/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TCCTTTHTGAHY
-NTTTTACGACC
A C G T T A G C A G T C A G C T A G C T C A G T G C T A C A G T A C T G C G T A G C T A G A C T
A C G T C T A G C G A T C A G T A C G T G C A T G T C A A G T C A C T G T C G A A G T C A G T C

PH0047.1_Hoxa11/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TCCTTTHTGAHY---
NNGTTTTACGACTTTA
A C G T A C G T T A G C A G T C A G C T A G C T C A G T G C T A C A G T A C T G C G T A G C T A G A C T A C G T A C G T A C G T
G T C A G A C T C T A G C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C G T A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TCCTTTHTGAHY
-NTTTTATGAC-
A C G T T A G C A G T C A G C T A G C T C A G T G C T A C A G T A C T G C G T A G C T A G A C T
A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T

HOXC9/MA0485.2/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TCCTTTHTGAHY
-NTTTTACGAC-
A C G T T A G C A G T C A G C T A G C T C A G T G C T A C A G T A C T G C G T A G C T A G A C T
A C G T C T G A C G A T A C G T A C G T C G A T G T C A A G T C A C T G C T G A A G T C A C G T