Information for 2-GCGKATTG (Motif 19)

A C T G A G T C C T A G A C G T G T C A A G C T A C G T A T C G
Reverse Opposite:
A T G C C G T A C T G A A C G T T G C A A G T C C T A G A G T C
p-value:1e-6
log p-value:-1.496e+01
Information Content per bp:1.827
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif2.19%
Number of Background Sequences with motif323.9
Percentage of Background Sequences with motif0.68%
Average Position of motif in Targets93.6 +/- 45.8bp
Average Position of motif in Background99.3 +/- 57.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---GCGKATTG-
NNTGTGGATTSS
A C G T A C G T A C G T A C T G A G T C C T A G A C G T G T C A A G C T A C G T A T C G A C G T
C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G

FOXH1/MA0479.1/Jaspar

Match Rank:2
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-GCGKATTG--
TGTGGATTNNN
A C G T A C T G A G T C C T A G A C G T G T C A A G C T A C G T A T C G A C G T A C G T
C G A T A C T G A C G T A C T G C A T G C G T A G C A T A C G T A T C G T C A G T C G A

PB0106.1_Arid5a_2/Jaspar

Match Rank:3
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----GCGKATTG----
TNNTTTCGTATTNNANN
A C G T A C G T A C G T A C G T A C G T A C T G A G T C C T A G A C G T G T C A A G C T A C G T A T C G A C G T A C G T A C G T A C G T
A C G T A G C T T C G A G C A T G A C T G A C T A T G C A T C G A C G T T G C A A C G T C G A T A C T G G C A T C T G A G A C T T A C G

MZF1/MA0056.2/Jaspar

Match Rank:4
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----GCGKATTG-
NNNTGGGGATTNN
A C G T A C G T A C G T A C G T A C T G A G T C C T A G A C G T G T C A A G C T A C G T A T C G A C G T
T C G A C G T A C T A G C G A T C T A G C T A G C A T G A C T G G C T A A C G T A C G T C G A T C A T G

Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer

Match Rank:5
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GCGKATTG---
---TATTGAYY
A C T G A G T C C T A G A C G T G T C A A G C T A C G T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T G C A T C G T A C G A T G A C T A C T G C T G A G A C T G A T C

NFY(CCAAT)/Promoter/Homer

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GCGKATTG---
-CCGATTGGCT
A C T G A G T C C T A G A C G T G T C A A G C T A C G T A T C G A C G T A C G T A C G T
A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T

PB0183.1_Sry_2/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCGKATTG--------
CNNNTATTGTTCNNNNN
A C G T A C T G A G T C C T A G A C G T G T C A A G C T A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A

PH0015.1_Crx/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GCGKATTG----
CGTTGGGGATTAGCCT
A C G T A C G T A C G T A C G T A C T G A G T C C T A G A C G T G T C A A G C T A C G T A T C G A C G T A C G T A C G T A C G T
A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T

PB0199.1_Zfp161_2/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GCGKATTG---
GCCGCGCAGTGCGT
A C G T A C G T A C G T A C T G A G T C C T A G A C G T G T C A A G C T A C G T A T C G A C G T A C G T A C G T
C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T

PB0173.1_Sox21_2/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCGKATTG--------
AATCAATTGTTCCGCTA
A C G T A C T G A G T C C T A G A C G T G T C A A G C T A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G A C T C A G A G C T A T G C G C T A C G T A A G C T C G A T A T C G C G A T A G C T A T G C T G A C A C T G G A T C C A G T T C G A