Information for 13-CTTTACTGCATT (Motif 19)

A G T C A C G T A C G T A C G T C G T A A G T C A C G T A C T G A G T C C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A A C G T A C T G A G T C C G T A A C T G A C G T C G T A C G T A C G T A A C T G
p-value:1e-3
log p-value:-8.796e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif8.33%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets148.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.2/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CTTTACTGCATT
NTTTTATTGCNN-
A C G T A G T C A C G T A C G T A C G T C G T A A G T C A C G T A C T G A G T C C G T A A C G T A C G T
C G A T G C A T C G A T G C A T G C A T T C G A G A C T C A G T C T A G G A T C G C A T G A C T A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CTTTACTGCATT---
AATCGCACTGCATTCCG
A C G T A C G T A G T C A C G T A C G T A C G T C G T A A G T C A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

PB0068.1_Sox1_1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTTTACTGCATT----
NNNTATTGAATTGNNN
A G T C A C G T A C G T A C G T C G T A A G T C A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

PH0158.1_Rhox11_2/Jaspar

Match Rank:4
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CTTTACTGCATT--
TCNCTTTACAGCGNNNT
A C G T A C G T A C G T A G T C A C G T A C G T A C G T C G T A A G T C A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T

PB0005.1_Bbx_1/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CTTTACTGCATT-
NANTTCATTGAATTA
A C G T A C G T A G T C A C G T A C G T A C G T C G T A A G T C A C G T A C T G A G T C C G T A A C G T A C G T A C G T
G A T C C G T A T A G C C G A T C G A T T G A C G C T A G C A T C G A T A C T G C G T A G C T A G A C T C G A T C G T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CTTTACTGCATT
DGWTTTATGRCN--
A C G T A C G T A G T C A C G T A C G T A C G T C G T A A G T C A C G T A C T G A G T C C G T A A C G T A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T A C G T

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CTTTACTGCATT
NTTTCATTRCHD-
A C G T A G T C A C G T A C G T A C G T C G T A A G T C A C G T A C T G A G T C C G T A A C G T A C G T
C G A T G C A T A C G T C G A T A G T C C G T A A C G T A C G T C T A G A G T C G A C T C A G T A C G T

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTTTACTGCATT
TTTTATGGCM--
A G T C A C G T A C G T A C G T C G T A A G T C A C G T A C T G A G T C C G T A A C G T A C G T
C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:9
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----CTTTACTGCATT
NTNAATTTTATTGNATT
A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T C G T A A G T C A C G T A C T G A G T C C G T A A C G T A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

Rhox11/MA0629.1/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CTTTACTGCATT--
TCNNTTTACAGCGNNNT
A C G T A C G T A C G T A G T C A C G T A C G T A C G T C G T A A G T C A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T