Information for 4-TTRAAGTTAGGA (Motif 5)

A C G T A C G T C T A G C G T A C G T A C A T G C G A T A C G T C T G A A C T G C T A G C T G A
Reverse Opposite:
G A C T A G T C T A G C G A C T C G T A C G T A G A T C A C G T C G A T A G T C C G T A G T C A
p-value:1e-4
log p-value:-1.093e+01
Information Content per bp:1.698
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif58.9
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets84.0 +/- 23.0bp
Average Position of motif in Background94.4 +/- 63.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TTRAAGTTAGGA
ATTTGAATT-----
A C G T A C G T A C G T A C G T C T A G C G T A C G T A C A T G C G A T A C G T C T G A A C T G C T A G C T G A
C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T A C G T A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TTRAAGTTAGGA
TTTGAAACCG---
A C G T A C G T A C G T C T A G C G T A C G T A C A T G C G A T A C G T C T G A A C T G C T A G C T G A
A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G A C G T A C G T A C G T

RUNX3/MA0684.2/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TTRAAGTTAGGA
NNTTGAGGTTNN--
A C G T A C G T A C G T A C G T C T A G C G T A C G T A C A T G C G A T A C G T C T G A A C T G C T A G C T G A
C T G A C G A T G A C T C G A T A C T G G C T A A C T G C T A G G A C T A G C T C G A T G C A T A C G T A C G T

PB0171.1_Sox18_2/Jaspar

Match Rank:4
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TTRAAGTTAGGA-
GGACTGAATTCATGCC
A C G T A C G T A C G T A C G T A C G T C T A G C G T A C G T A C A T G C G A T A C G T C T G A A C T G C T A G C T G A A C G T
C T A G A C T G C T G A A T G C A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A C G A T C T A G G T A C T G A C

PB0068.1_Sox1_1/Jaspar

Match Rank:5
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----TTRAAGTTAGGA
NNNTATTGAATTGNNN-
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G C G T A C G T A C A T G C G A T A C G T C T G A A C T G C T A G C T G A
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T A C G T

MEF2A/MA0052.4/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TTRAAGTTAGGA-
TTCTAAAAATAGAAA
A C G T A C G T A C G T A C G T C T A G C G T A C G T A C A T G C G A T A C G T C T G A A C T G C T A G C T G A A C G T
C G A T C A G T G A T C G A C T C G T A C G T A C G T A C G T A C G T A G C A T C T G A C T A G G T C A G C T A G C T A

NR1I3/MA1534.1/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TTRAAGTTAGGA
ATGAACTTT---
A C G T A C G T C T A G C G T A C G T A C A T G C G A T A C G T C T G A A C T G C T A G C T G A
C T G A G A C T T C A G G T C A G T C A A G T C A G C T G A C T G C A T A C G T A C G T A C G T

VDR/MA0693.2/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TTRAAGTTAGGA
-TGAACTCA---
A C G T A C G T C T A G C G T A C G T A C A T G C G A T A C G T C T G A A C T G C T A G C T G A
A C G T A G C T C T A G G T C A T G C A T G A C G A C T A G T C C T G A A C G T A C G T A C G T

PSE(SNAPc)/K562-mStart-Seq/Homer

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TTRAAGTTAGGA------
CTTTTHRSTTAKGGTGABTW
A C G T A C G T A C G T A C G T C T A G C G T A C G T A C A T G C G A T A C G T C T G A A C T G C T A G C T G A A C G T A C G T A C G T A C G T A C G T A C G T
G A T C G C A T C A G T C G A T G C A T G C T A T C A G T A G C G C A T A G C T C T G A A C G T C T A G C T A G A G C T C T A G C T G A A T G C G A C T G C A T

Dlx1/MA0879.1/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TTRAAGTTAGGA
-NNTAATTANN-
A C G T A C G T C T A G C G T A C G T A C A T G C G A T A C G T C T G A A C T G C T A G C T G A
A C G T T A C G T G C A C G A T T G C A G C T A C G A T A C G T C T G A A C T G A C T G A C G T