Information for 7-GGTCAGTACAAG (Motif 6)

C A T G T C A G A C G T A G T C C T G A A T C G C A G T C T G A A T G C G C T A G T C A T C A G
Reverse Opposite:
A G T C A C G T C G A T T A C G G A C T G C T A A T G C A G C T T A C G G T C A A G T C G T A C
p-value:1e-11
log p-value:-2.538e+01
Information Content per bp:1.720
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif1.92%
Number of Background Sequences with motif104.5
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets101.7 +/- 44.1bp
Average Position of motif in Background88.6 +/- 66.0bp
Strand Bias (log2 ratio + to - strand density)1.5
Multiplicity (# of sites on avg that occur together)1.35
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GGTCAGTACAAG
AGGTCA-------
A C G T C A T G T C A G A C G T A G T C C T G A A T C G C A G T C T G A A T G C G C T A G T C A T C A G
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NR2C1/MA1535.1/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GGTCAGTACAAG
CGAGGTCAC------
A C G T A C G T A C G T C A T G T C A G A C G T A G T C C T G A A T C G C A G T C T G A A T G C G C T A G T C A T C A G
G T A C C T A G T C G A A C T G A C T G A C G T A T G C C T G A G A T C A C G T A C G T A C G T A C G T A C G T A C G T

EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer

Match Rank:3
Score:0.62
Offset:-7
Orientation:forward strand
Alignment:-------GGTCAGTACAAG
NRBCARRGGTCA-------
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G T C A G A C G T A G T C C T G A A T C G C A G T C T G A A T G C G C T A G T C A T C A G
T C A G T C A G A C G T G T A C G C T A T C A G C T G A A C T G A C T G A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GGTCAGTACAAG
AGRGGTCA-------
A C G T A C G T A C G T C A T G T C A G A C G T A G T C C T G A A T C G C A G T C T G A A T G C G C T A G T C A T C A G
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RARA::RXRG/MA1149.1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GGTCAGTACAAG----
GAGGTCATGTAGAGGTCA
A C G T A C G T C A T G T C A G A C G T A G T C C T G A A T C G C A G T C T G A A T G C G C T A G T C A T C A G A C G T A C G T A C G T A C G T
C T A G T C G A C A T G C A T G A C G T A G T C C T G A G C A T A T C G A C G T C T G A T C A G T C G A C A T G C A T G A C G T A G T C T C G A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GGTCAGTACAAG-----
RGGTCADNNAGAGGTCAV
A C G T C A T G T C A G A C G T A G T C C T G A A T C G C A G T C T G A A T G C G C T A G T C A T C A G A C G T A C G T A C G T A C G T A C G T
C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C

NR1H4/MA1110.1/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GGTCAGTACAAG
NAGGTCATTGA---
A C G T A C G T C A T G T C A G A C G T A G T C C T G A A T C G C A G T C T G A A T G C G C T A G T C A T C A G
C G A T T C G A C A T G C A T G A C G T G A T C T C G A A G C T G C A T T C A G T G C A A C G T A C G T A C G T

NR2C2(var.2)/MA1536.1/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GGTCAGTACAAG
GAGGTCAT------
A C G T A C G T C A T G T C A G A C G T A G T C C T G A A T C G C A G T C T G A A T G C G C T A G T C A T C A G
T C A G T C G A A C T G A C T G A C G T A G T C C T G A G C A T A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GGTCAGTACAAG
TRAGGTCA-------
A C G T A C G T A C G T C A T G T C A G A C G T A G T C C T G A A T C G C A G T C T G A A T G C G C T A G T C A T C A G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer

Match Rank:10
Score:0.60
Offset:-7
Orientation:forward strand
Alignment:-------GGTCAGTACAAG
GKBCARAGGTCA-------
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G T C A G A C G T A G T C C T G A A T C G C A G T C T G A A T G C G C T A G T C A T C A G
T A C G A C T G A G C T G T A C C G T A T C G A C T G A A C T G C A T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T