Information for 5-GACAAAGA (Motif 35)

A C T G C G T A A G T C C G T A C G T A C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T A C G T A C G T A C T G A C G T A G T C
p-value:1e-1
log p-value:-3.814e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif778.6
Percentage of Background Sequences with motif1.45%
Average Position of motif in Targets110.5 +/- 67.5bp
Average Position of motif in Background100.6 +/- 74.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX10/MA0442.2/Jaspar

Match Rank:1
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--GACAAAGA-
AAAACAAAGAA
A C G T A C G T A C T G C G T A A G T C C G T A C G T A C G T A A C T G C G T A A C G T
C T G A C T G A T G C A G C T A A G T C C G T A G C T A G C T A A C T G T C G A T G C A

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:2
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--GACAAAGA
GGAACAAAGR
A C G T A C G T A C T G C G T A A G T C C G T A C G T A C G T A A C T G C G T A
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:3
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--GACAAAGA
VRRACAAWGG
A C G T A C G T A C T G C G T A A G T C C G T A C G T A C G T A A C T G C G T A
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

PB0166.1_Sox12_2/Jaspar

Match Rank:4
Score:0.80
Offset:-5
Orientation:forward strand
Alignment:-----GACAAAGA---
AAACAGACAAAGGAAT
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C C G T A C G T A C G T A A C T G C G T A A C G T A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

SOX4/MA0867.2/Jaspar

Match Rank:5
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-GACAAAGA-
GAACAAAGGG
A C G T A C T G C G T A A G T C C G T A C G T A C G T A A C T G C G T A A C G T
C T A G T C G A C G T A A T G C T C G A T C G A G C T A C T A G T C A G T C A G

Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer

Match Rank:6
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---GACAAAGA-
BMRVACAAWGGV
A C G T A C G T A C G T A C T G C G T A A G T C C G T A C G T A C G T A A C T G C G T A A C G T
A T G C T G A C C T G A T A C G C G T A A G T C C G T A C G T A C G T A C T A G T C A G T G C A

Sox3/MA0514.1/Jaspar

Match Rank:7
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--GACAAAGA
AAAACAAAGG
A C G T A C G T A C T G C G T A A G T C C G T A C G T A C G T A A C T G C G T A
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GACAAAGA
RACAAWGG
A C T G C G T A A G T C C G T A C G T A C G T A A C T G C G T A
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:9
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:GACAAAGA-----
-ACAAAGGNBCCT
A C T G C G T A A G T C C G T A C G T A C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--GACAAAGA
AAAACAATGG
A C G T A C G T A C T G C G T A A G T C C G T A C G T A C G T A A C T G C G T A
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G