Information for 13-TATAGGCATC (Motif 29)

A C G T C G T A A C G T C G T A A C T G A C T G A G T C C G T A A C G T A G T C
Reverse Opposite:
A C T G C G T A A C G T A C T G A G T C A G T C A C G T C G T A A C G T C G T A
p-value:1e-3
log p-value:-7.107e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif12.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.0 +/- 0.0bp
Average Position of motif in Background81.7 +/- 80.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TATAGGCATC
GHATATKCAT-
A C G T A C G T C G T A A C G T C G T A A C T G A C T G A G T C C G T A A C G T A G T C
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TATAGGCATC
NNTTGGCANN
A C G T C G T A A C G T C G T A A C T G A C T G A G T C C G T A A C G T A G T C
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TATAGGCATC---
NAGATWNBNATCTNN
A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C T G A G T C C G T A A C G T A G T C A C G T A C G T A C G T
A T G C C G T A A C T G C G T A A C G T G C T A T C G A A G C T C G A T C G T A A C G T A G T C C G A T A C T G G A T C

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TATAGGCATC
GAATATTCAT-
A C G T A C G T C G T A A C G T C G T A A C T G A C T G A G T C C G T A A C G T A G T C
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TATAGGCATC
-CNAGGCCT-
A C G T C G T A A C G T C G T A A C T G A C T G A G T C C G T A A C G T A G T C
A C G T A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TATAGGCATC
NGTGGGCAT-
A C G T C G T A A C G T C G T A A C T G A C T G A G T C C G T A A C G T A G T C
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TATAGGCATC---
NNNNTTGGGCACNNCN
A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C T G A G T C C G T A A C G T A G T C A C G T A C G T A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

POU3F4/MA0789.1/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TATAGGCATC
-ATTTGCATA
A C G T C G T A A C G T C G T A A C T G A C T G A G T C C G T A A C G T A G T C
A C G T G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TATAGGCATC
GGTTGGCAT-
A C G T C G T A A C G T C G T A A C T G A C T G A G T C C G T A A C G T A G T C
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---TATAGGCATC---
TNTAATTTGCATANNN
A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C T G A G T C C G T A A C G T A G T C A C G T A C G T A C G T
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A