Information for 2-TGGAGAGAGTGT (Motif 2)

A C G T T A C G A C T G C G T A A C T G C G T A A C T G C G T A A C T G A C G T C T A G A C G T
Reverse Opposite:
C G T A A G T C C G T A G T A C A C G T A G T C A C G T A G T C A C G T A G T C A G T C C G T A
p-value:1e-21
log p-value:-4.871e+01
Information Content per bp:1.958
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.20%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets103.7 +/- 55.0bp
Average Position of motif in Background121.5 +/- 16.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.44
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM1/MA0508.3/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TGGAGAGAGTGT
NAGAGAAAGNA-
A C G T T A C G A C T G C G T A A C T G C G T A A C T G C G T A A C T G A C G T C T A G A C G T
C T G A C T G A C A T G G C T A C A T G G C T A C G T A G C T A C A T G C G T A C T G A A C G T

MSANTD3/MA1523.1/Jaspar

Match Rank:2
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:TGGAGAGAGTGT--
----GTGAGTGNAC
A C G T T A C G A C T G C G T A A C T G C G T A A C T G C G T A A C T G A C G T C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G C A G T C T A G C G T A C T A G G C A T C T A G A C G T T G C A T A G C

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TGGAGAGAGTGT----
-GRACAGWMTGTYCTB
A C G T T A C G A C T G C G T A A C T G C G T A A C T G C G T A A C T G A C G T C T A G A C G T A C G T A C G T A C G T A C G T
A C G T C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G

NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:4
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---TGGAGAGAGTGT-----
NANTGGAAAAANTGAGTCAN
A C G T A C G T A C G T A C G T T A C G A C T G C G T A A C T G C G T A A C T G C G T A A C T G A C G T C T A G A C G T A C G T A C G T A C G T A C G T A C G T
T A C G C T G A T C G A C G A T C T A G C T A G T C G A C T G A T C G A T C G A C G T A T C G A G C A T C A T G C G T A T A C G G C A T T G A C C G T A A G C T

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TGGAGAGAGTGT
ATGGGGTGAT---
A C G T A C G T T A C G A C T G C G T A A C T G C G T A A C T G C G T A A C T G A C G T C T A G A C G T
T C G A A G C T C A T G A C T G A T C G T A C G G A C T A T C G C G T A A G C T A C G T A C G T A C G T

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TGGAGAGAGTGT
GTGGCGTGACNG-
A C G T A C G T T A C G A C T G C G T A A C T G C G T A A C T G C G T A A C T G A C G T C T A G A C G T
T C A G A C G T C A T G A C T G A T G C A T C G A C G T A T C G C T G A A G T C G A T C C A T G A C G T

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TGGAGAGAGTGT
-AGAGGAAGTG-
A C G T T A C G A C T G C G T A A C T G C G T A A C T G C G T A A C T G A C G T C T A G A C G T
A C G T C G T A T A C G T C G A A C T G A C T G C G T A C G T A T A C G A G C T T A C G A C G T

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TGGAGAGAGTGT----
AGNACANNNTGTNCTN
A C G T T A C G A C T G C G T A A C T G C G T A A C T G C G T A A C T G A C G T C T A G A C G T A C G T A C G T A C G T A C G T
C T G A C T A G T C G A C G T A A G T C C T G A A T C G C G T A T A G C G A C T A C T G A C G T A G C T A G T C G A C T A T G C

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TGGAGAGAGTGT--
VAGRACAKNCTGTBC
A C G T A C G T T A C G A C T G C G T A A C T G C G T A A C T G C G T A A C T G A C G T C T A G A C G T A C G T A C G T
T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TGGAGAGAGTGT---
NAGAACAGNCTGTNCT
A C G T A C G T T A C G A C T G C G T A A C T G C G T A A C T G C G T A A C T G A C G T C T A G A C G T A C G T A C G T A C G T
T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T