Information for 3-MCACYCAMSKAY (Motif 3)

G T A C A G T C C G T A A G T C A G T C A G T C C G T A G T C A A T G C A C G T C G T A G A C T
Reverse Opposite:
C T A G A C G T T G A C A T C G A C G T A C G T A C T G C T A G A C T G A C G T A C T G A C T G
p-value:1e-5
log p-value:-1.217e+01
Information Content per bp:1.804
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif238.0
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets103.7 +/- 42.8bp
Average Position of motif in Background101.9 +/- 80.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX2-2/MA1645.1/Jaspar

Match Rank:1
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---MCACYCAMSKAY
TAACCACTCAAGAA-
A C G T A C G T A C G T G T A C A G T C C G T A A G T C A G T C A G T C C G T A G T C A A T G C A C G T C G T A G A C T
G A C T G C T A C G T A T G A C G A T C G C T A G T A C G C A T A T G C G T C A T C G A T C A G G C T A G C T A A C G T

NKX2-5/MA0063.2/Jaspar

Match Rank:2
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-MCACYCAMSKAY
ACCACTCAAAA--
A C G T G T A C A G T C C G T A A G T C A G T C A G T C C G T A G T C A A T G C A C G T C G T A G A C T
T C G A T G A C G A T C C T G A G A T C G C A T G A T C C G T A G C T A T C G A G C T A A C G T A C G T

MSANTD3/MA1523.1/Jaspar

Match Rank:3
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--MCACYCAMSKAY
GTACACTCAC----
A C G T A C G T G T A C A G T C C G T A A G T C A G T C A G T C C G T A G T C A A T G C A C G T C G T A G A C T
A T C G A C G T T G C A G A T C C G T A G A T C G C A T G A T C G T C A G T A C A C G T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:4
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--MCACYCAMSKAY
AGCCACTCAAG---
A C G T A C G T G T A C A G T C C G T A A G T C A G T C A G T C C G T A G T C A A T G C A C G T C G T A G A C T
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:5
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---MCACYCAMSKAY
GGACCACCCACG---
A C G T A C G T A C G T G T A C A G T C C G T A A G T C A G T C A G T C C G T A G T C A A T G C A C G T C G T A G A C T
C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G A C G T A C G T A C G T

Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer

Match Rank:6
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---MCACYCAMSKAY
AGACCACCCASR---
A C G T A C G T A C G T G T A C A G T C C G T A A G T C A G T C A G T C C G T A G T C A A T G C A C G T C G T A G A C T
C T G A A C T G T C G A T G A C G A T C G C T A T A G C T G A C G T A C C G T A T A G C T C A G A C G T A C G T A C G T

GLI3/MA1491.1/Jaspar

Match Rank:7
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---MCACYCAMSKAY
AGACCACCCACGTCG
A C G T A C G T A C G T G T A C A G T C C G T A A G T C A G T C A G T C C G T A G T C A A T G C A C G T C G T A G A C T
T G C A A C T G T G C A T G A C T G A C G T C A T A G C G T A C G T A C C T G A G T A C T A C G C G A T G A T C A T C G

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:MCACYCAMSKAY
-CRCCCACGCA-
G T A C A G T C C G T A A G T C A G T C A G T C C G T A G T C A A T G C A C G T C G T A G A C T
A C G T G A T C C T G A A G T C T G A C A G T C G T C A A G T C C T A G A G T C G T C A A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--MCACYCAMSKAY
MRSCACTYAA----
A C G T A C G T G T A C A G T C C G T A A G T C A G T C A G T C C G T A G T C A A T G C A C G T C G T A G A C T
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T A C G T

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:10
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-MCACYCAMSKAY
YCCGCCCACGCN-
A C G T G T A C A G T C C G T A A G T C A G T C A G T C C G T A G T C A A T G C A C G T C G T A G A C T
G A T C G T A C G A T C C T A G A G T C A G T C A G T C G T C A A G T C C T A G A T G C T C G A A C G T