Information for 2-CBTCAGGGCTGA (Motif 2)

A G T C A G T C A C G T A G T C C G T A A T C G A C T G A C T G A T G C A C G T A C T G C G T A
Reverse Opposite:
C G A T G T A C C G T A A T C G A G T C G T A C A T G C A C G T A C T G C G T A T A C G C T A G
p-value:1e-7
log p-value:-1.766e+01
Information Content per bp:1.788
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif36.36%
Number of Background Sequences with motif214.4
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets73.2 +/- 34.9bp
Average Position of motif in Background104.2 +/- 80.2bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2A/MA0003.4/Jaspar

Match Rank:1
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CBTCAGGGCTGA
ATTGCCTCAGGCCA--
A C G T A C G T A C G T A C G T A G T C A G T C A C G T A G T C C G T A A T C G A C T G A C T G A T G C A C G T A C T G C G T A
T G C A A G C T C A G T A T C G T G A C A G T C A G C T T A G C T C G A T A C G A T C G T A G C G T A C T G C A A C G T A C G T

TFAP2C(var.2)/MA0814.2/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CBTCAGGGCTGA
NNCGCCTCAGGCNN--
A C G T A C G T A C G T A C G T A G T C A G T C A C G T A G T C C G T A A T C G A C T G A C T G A T G C A C G T A C T G C G T A
T A G C A G T C T A G C A T C G A T G C A T G C A C G T A T G C T C G A T A C G A T C G T A G C G T A C T G A C A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CBTCAGGGCTGA
AGTCACGC----
A G T C A G T C A C G T A G T C C G T A A T C G A C T G A C T G A T G C A C G T A C T G C G T A
G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T A C G T A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CBTCAGGGCTGA
GCCTCAGGGCAT-
A C G T A G T C A G T C A C G T A G T C C G T A A T C G A C T G A C T G A T G C A C G T A C T G C G T A
A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T A C G T

PAX1/MA0779.1/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CBTCAGGGCTGA-----
CGTCACGCATGACTGCA
A G T C A G T C A C G T A G T C C G T A A T C G A C T G A C T G A T G C A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CBTCAGGGCTGA
TTTNATTGCY--
A G T C A G T C A C G T A G T C C G T A A T C G A C T G A C T G A T G C A C G T A C T G C G T A
A C G T A C G T C G A T A C G T G T C A A C G T C A G T C T A G A T G C G A T C A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CBTCAGGGCTGA
-TTAAGTGCTT-
A G T C A G T C A C G T A G T C C G T A A T C G A C T G A C T G A T G C A C G T A C T G C G T A
A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T

PAX9/MA0781.1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CBTCAGGGCTGA-----
CGTCACGCATGACTGCA
A G T C A G T C A C G T A G T C C G T A A T C G A C T G A C T G A T G C A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CBTCAGGGCTGA
NTTTCATTRCHD-
A C G T A G T C A G T C A C G T A G T C C G T A A T C G A C T G A C T G A T G C A C G T A C T G C G T A
C G A T G C A T A C G T C G A T A G T C C G T A A C G T A C G T C T A G A G T C G A C T C A G T A C G T

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CBTCAGGGCTGA
ACGTCA-------
A C G T A G T C A G T C A C G T A G T C C G T A A T C G A C T G A C T G A T G C A C G T A C T G C G T A
C T G A A G T C T C A G A C G T G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T