Information for 12-AAAAACCCTAAA (Motif 18)

C G T A C G T A C T G A C T G A C G T A T G A C G A T C A G T C A C G T T C G A C G T A C G T A
Reverse Opposite:
A C G T A C G T A G C T C G T A C T A G C T A G A C T G G C A T A G C T A G C T A C G T C G A T
p-value:1e-6
log p-value:-1.525e+01
Information Content per bp:1.853
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif44.2
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets87.9 +/- 59.3bp
Average Position of motif in Background108.7 +/- 44.4bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)2.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:1
Score:0.58
Offset:3
Orientation:forward strand
Alignment:AAAAACCCTAAA---
---NGYCATAAAWCH
C G T A C G T A C T G A C T G A C G T A T G A C G A T C A G T C A C G T T C G A C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

PB0135.1_Hoxa3_2/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AAAAACCCTAAA--
AAAAACCATTAAGG
C G T A C G T A C T G A C T G A C G T A T G A C G A T C A G T C A C G T T C G A C G T A C G T A A C G T A C G T
T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

ONECUT3/MA0757.1/Jaspar

Match Rank:3
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AAAAACCCTAAA
AAAAAATCAATAAT
A C G T A C G T C G T A C G T A C T G A C T G A C G T A T G A C G A T C A G T C A C G T T C G A C G T A C G T A
T C G A C T G A C G T A G C T A C T G A C T G A G A C T G T A C T C G A C G T A C G A T C G T A G C T A G C A T

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.56
Offset:3
Orientation:forward strand
Alignment:AAAAACCCTAAA-
---VGCCATAAAA
C G T A C G T A C T G A C T G A C G T A T G A C G A T C A G T C A C G T T C G A C G T A C G T A A C G T
A C G T A C G T A C G T T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A

Nkx3-2/MA0122.3/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AAAAACCCTAAA-
ATAACCACTTAAA
C G T A C G T A C T G A C T G A C G T A T G A C G A T C A G T C A C G T T C G A C G T A C G T A A C G T
C G T A C G A T C G T A C G T A T G A C G A T C G C T A G T A C G C A T G A C T G C T A C G T A G C T A

PH0064.1_Hoxb9/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AAAAACCCTAAA-----
-AGAGCCATAAAATTCG
C G T A C G T A C T G A C T G A C G T A T G A C G A T C A G T C A C G T T C G A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

BARX2/MA1471.1/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AAAAACCCTAAA
AAAAACCATTAC
C G T A C G T A C T G A C T G A C G T A T G A C G A T C A G T C A C G T T C G A C G T A C G T A
C T G A C G T A G C T A C G T A T G C A G A T C T G A C T C G A C A G T G A C T C G T A T A G C

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:8
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AAAAACCCTAAA
--AAACMATTAN
C G T A C G T A C T G A C T G A C G T A T G A C G A T C A G T C A C G T T C G A C G T A C G T A
A C G T A C G T T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G

PH0047.1_Hoxa11/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AAAAACCCTAAA----
TAAAGTCGTAAAACAT
C G T A C G T A C T G A C T G A C G T A T G A C G A T C A G T C A C G T T C G A C G T A C G T A A C G T A C G T A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

ONECUT2/MA0756.1/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AAAAACCCTAAA
AAAAAATCGATAAT
A C G T A C G T C G T A C G T A C T G A C T G A C G T A T G A C G A T C A G T C A C G T T C G A C G T A C G T A
T C G A C T G A C G T A G C T A C T G A C T G A A C G T G T A C T C A G G C T A G C A T C G T A G C T A G C A T