Information for 4-GCTCTAATCACC (Motif 4)

A C T G A G T C A C G T A G T C A C G T C G T A C G T A A C G T A G T C C G T A A G T C A G T C
Reverse Opposite:
A C T G A C T G A C G T A C T G C G T A A C G T A C G T C G T A A C T G C G T A A C T G A G T C
p-value:1e-5
log p-value:-1.162e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD3/MA0912.2/Jaspar

Match Rank:1
Score:0.67
Offset:3
Orientation:forward strand
Alignment:GCTCTAATCACC
---CTAATTAC-
A C T G A G T C A C G T A G T C A C G T C G T A C G T A A C G T A G T C C G T A A G T C A G T C
A C G T A C G T A C G T A G T C A G C T G T C A C G T A A C G T A C G T C T G A A T G C A C G T

EVX2/MA0888.1/Jaspar

Match Rank:2
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GCTCTAATCACC
--NNTAATTANN
A C T G A G T C A C G T A G T C A C G T C G T A C G T A A C G T A G T C C G T A A G T C A G T C
A C G T A C G T T A C G A T G C G A C T T C G A T G C A A G C T A C G T C T G A A T G C A T G C

EVX1/MA0887.1/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GCTCTAATCACC
--GNTAATTANN
A C T G A G T C A C G T A G T C A C G T C G T A C G T A A C G T A G T C C G T A A G T C A G T C
A C G T A C G T A T C G T A G C G A C T C T G A T G C A A G C T A G C T C T G A A T G C A G T C

Crx/MA0467.1/Jaspar

Match Rank:4
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GCTCTAATCACC--
---CTAATCCTCTT
A C T G A G T C A C G T A G T C A C G T C G T A C G T A A C G T A G T C C G T A A G T C A G T C A C G T A C G T
A C G T A C G T A C G T G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:5
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GCTCTAATCACC
---YTAATCCY-
A C T G A G T C A C G T A G T C A C G T C G T A C G T A A C G T A G T C C G T A A G T C A G T C
A C G T A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T

GSC2/MA0891.1/Jaspar

Match Rank:6
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GCTCTAATCACC
--CCTAATCCGC
A C T G A G T C A C G T A G T C A C G T C G T A C G T A A C G T A G T C C G T A A G T C A G T C
A C G T A C G T T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C

HOXB7/MA1501.1/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GCTCTAATCACC
--GNTAATTACC
A C T G A G T C A C G T A G T C A C G T C G T A C G T A A C G T A G T C C G T A A G T C A G T C
A C G T A C G T A T C G A G C T A G C T C G T A G T C A A C G T A C G T T C G A G T A C A G T C

GSC/MA0648.1/Jaspar

Match Rank:8
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GCTCTAATCACC
--GCTAATCCCC
A C T G A G T C A C G T A G T C A C G T C G T A C G T A A C G T A G T C C G T A A G T C A G T C
A C G T A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C

OTX2/MA0712.2/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GCTCTAATCACC-
-NNCTAATCCCNN
A C T G A G T C A C G T A G T C A C G T C G T A C G T A A C G T A G T C C G T A A G T C A G T C A C G T
A C G T G C A T G C A T G A T C G C A T C G T A G T C A C A G T G A T C G A T C G A T C G C A T C G A T

VAX2/MA0723.1/Jaspar

Match Rank:10
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GCTCTAATCACC
---CTAATTAC-
A C T G A G T C A C G T A G T C A C G T C G T A C G T A A C G T A G T C C G T A A G T C A G T C
A C G T A C G T A C G T A G T C G A C T G T C A G C T A C G A T C A G T C T G A A G T C A C G T