Information for 7-TGATGGACCG (Motif 20)

A C G T A C T G C G T A A C G T A C T G A C T G C G T A A G T C A G T C A C T G
Reverse Opposite:
A G T C A C T G A C T G A C G T A G T C A G T C C G T A A C G T A G T C C G T A
p-value:1e-3
log p-value:-8.550e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets127.0 +/- 0.0bp
Average Position of motif in Background82.3 +/- 12.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TGATGGACCG-
NTGATTGACAGN
A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A A G T C A G T C A C T G A C G T
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:2
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TGATGGACCG-
BTGABTGACAGS
A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A A G T C A G T C A C T G A C G T
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TGATGGACCG
TGATKGATGR
A C G T A C T G C G T A A C G T A C T G A C T G C G T A A G T C A G T C A C T G
C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TGATGGACCG--
TGAGTGACAGSC
A C G T A C T G C G T A A C G T A C T G A C T G C G T A A G T C A G T C A C T G A C G T A C G T
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TGATGGACCG-
ATGATKGATGRC
A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A A G T C A G T C A C T G A C G T
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

PKNOX1/MA0782.2/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TGATGGACCG---
TTTGAGTGACAGCTA
A C G T A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A A G T C A G T C A C T G A C G T A C G T A C G T
C G A T G C A T C G A T T C A G C T G A A C T G C G A T A T C G C T G A G A T C C G T A A C T G T A G C A G C T C T G A

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGATGGACCG-
RTGATTKATRGN
A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A A G T C A G T C A C T G A C G T
C T G A C G A T C T A G C G T A A G C T C G A T C A G T C T G A G A C T C T A G C T A G A T G C

PBX3/MA1114.1/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TGATGGACCG----
GGGTGAGTGACAGGCGG
A C G T A C G T A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A A G T C A G T C A C T G A C G T A C G T A C G T A C G T
T A C G A C T G A C T G C G A T T C A G C G T A A C T G C A G T T A C G C T G A T A G C C T G A A C T G T A C G A T G C T C A G A T C G

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TGATGGACCG
MTGATGCAAT-
A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A A G T C A G T C A C T G
T G C A A G C T C A T G C G T A A G C T A C T G G A T C G T C A C G T A A G C T A C G T

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TGATGGACCG
ATGATGCAAT-
A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A A G T C A G T C A C T G
T G C A A G C T A C T G C G T A A G C T C A T G G A T C T G C A C G T A A G C T A C G T