Information for 4-CGGCCTAT (Motif 38)

A G T C A C T G A C T G A G T C A G T C A C G T C G T A A C G T
Reverse Opposite:
C G T A A C G T C G T A A C T G A C T G A G T C A G T C A C T G
p-value:1e-2
log p-value:-5.440e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif6.67%
Number of Background Sequences with motif22.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets105.0 +/- 0.0bp
Average Position of motif in Background122.7 +/- 53.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:1
Score:0.74
Offset:0
Orientation:forward strand
Alignment:CGGCCTAT
AGGCCTAG
A G T C A C T G A C T G A G T C A G T C A C G T C G T A A C G T
T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G

Zfx/MA0146.2/Jaspar

Match Rank:2
Score:0.69
Offset:-7
Orientation:forward strand
Alignment:-------CGGCCTAT
GGGGCCGAGGCCTG-
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C T G A G T C A G T C A C G T C G T A A C G T
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T

NFYB/MA0502.2/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CGGCCTAT---
NTGGCCAATGAG
A C G T A G T C A C T G A C T G A G T C A G T C A C G T C G T A A C G T A C G T A C G T A C G T
A G T C A C G T C T A G T C A G G A T C G T A C G T C A T C G A C G A T T A C G T C G A T A C G

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CGGCCTAT
CNAGGCCT--
A C G T A C G T A G T C A C T G A C T G A G T C A G T C A C G T C G T A A C G T
A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CGGCCTAT---
-AGCCAATCGG
A G T C A C T G A C T G A G T C A G T C A C G T C G T A A C G T A C G T A C G T A C G T
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

PB0143.1_Klf7_2/Jaspar

Match Rank:6
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----CGGCCTAT----
NNNTNGGGCGTATNNTN
A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C T G A G T C A G T C A C G T C G T A A C G T A C G T A C G T A C G T A C G T
G T C A C G T A A C T G G C A T C A G T C T A G A C T G A C T G G A T C C T A G A C G T G C T A G C A T T C A G G A T C A G C T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CGGCCTAT--
ACTAGCCAATCA
A C G T A C G T A G T C A C T G A C T G A G T C A G T C A C G T C G T A A C G T A C G T A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CGGCCTAT
GCTCGGSCTC-
A C G T A C G T A C G T A G T C A C T G A C T G A G T C A G T C A C G T C G T A A C G T
C T A G G T A C A C G T A T G C C T A G A C T G T A C G A G T C A C G T A G T C A C G T

NEUROG2/MA0669.1/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CGGCCTAT---
-GACATATGTT
A G T C A C T G A C T G A G T C A G T C A C G T C G T A A C G T A C G T A C G T A C G T
A C G T C T A G T C G A A G T C C G T A A C G T T G C A A G C T C T A G A C G T A G C T

RORC/MA1151.1/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CGGCCTAT----
TGACCTANTTAN
A G T C A C T G A C T G A G T C A G T C A C G T C G T A A C G T A C G T A C G T A C G T A C G T
G A C T T C A G T G C A G A T C G T A C A G C T T G C A T A G C G C A T C G A T G C T A G A C T