Information for 10-AAAYCMTAAAAT (Motif 14)

C G T A C G T A C G T A G A T C A G T C G T C A A C G T C G T A C G T A C G T A C G T A A G C T
Reverse Opposite:
C T G A C G A T G C A T A C G T A C G T C G T A A C G T A C T G C T A G C G A T A C G T A C G T
p-value:1e-8
log p-value:-2.062e+01
Information Content per bp:1.826
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif22.0
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets113.6 +/- 39.9bp
Average Position of motif in Background107.3 +/- 58.8bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.56
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0064.1_Hoxb9/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AAAYCMTAAAAT---
AGAGCCATAAAATTCG
A C G T C G T A C G T A C G T A G A T C A G T C G T C A A C G T C G T A C G T A C G T A C G T A A G C T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:2
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AAAYCMTAAAAT
--GTCATAAAAN
C G T A C G T A C G T A G A T C A G T C G T C A A C G T C G T A C G T A C G T A C G T A A G C T
A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

HOXC10/MA0905.1/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:forward strand
Alignment:AAAYCMTAAAAT
--GTCGTAAAAT
C G T A C G T A C G T A G A T C A G T C G T C A A C G T C G T A C G T A C G T A C G T A A G C T
A C G T A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

PH0047.1_Hoxa11/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AAAYCMTAAAAT--
TAAAGTCGTAAAACAT
A C G T A C G T C G T A C G T A C G T A G A T C A G T C G T C A A C G T C G T A C G T A C G T A C G T A A G C T A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AAAYCMTAAAAT-
-NGYCATAAAWCH
C G T A C G T A C G T A G A T C A G T C G T C A A C G T C G T A C G T A C G T A C G T A A G C T A C G T
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

HOXB9/MA1503.1/Jaspar

Match Rank:6
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AAAYCMTAAAAT
--GTCGTAAAAT
C G T A C G T A C G T A G A T C A G T C G T C A A C G T C G T A C G T A C G T A C G T A A G C T
A C G T A C G T T C A G A G C T A G T C T C A G A C G T G C T A C G T A G T C A G C T A G A C T

BARX2/MA1471.1/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AAAYCMTAAAAT
AAAAACCATTAC--
A C G T A C G T C G T A C G T A C G T A G A T C A G T C G T C A A C G T C G T A C G T A C G T A C G T A A G C T
C T G A C G T A G C T A C G T A T G C A G A T C T G A C T C G A C A G T G A C T C G T A T A G C A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AAAYCMTAAAAT----
AATGCAATAAAATTTAT
A C G T C G T A C G T A C G T A G A T C A G T C G T C A A C G T C G T A C G T A C G T A C G T A A G C T A C G T A C G T A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AAAYCMTAAAAT
-VGCCATAAAA-
C G T A C G T A C G T A G A T C A G T C G T C A A C G T C G T A C G T A C G T A C G T A A G C T
A C G T T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A A C G T

HOXD12/MA0873.1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AAAYCMTAAAAT
-AGTCGTAAAAA
C G T A C G T A C G T A G A T C A G T C G T C A A C G T C G T A C G T A C G T A C G T A A G C T
A C G T T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A