Information for 12-GACCRAATTAGG (Motif 13)

A C T G C G T A A G T C G A T C T C A G G T C A C G T A A C G T A C G T C T G A A C T G A T C G
Reverse Opposite:
A T G C A G T C A G C T G T C A G T C A C G A T A C G T A G T C C T A G A C T G C G A T A G T C
p-value:1e-10
log p-value:-2.448e+01
Information Content per bp:1.798
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.40%
Number of Background Sequences with motif41.7
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets84.2 +/- 56.6bp
Average Position of motif in Background111.7 +/- 57.3bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0089.1_Isx/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GACCRAATTAGG---
ACNNCTAATTAGNNNN
A C G T A C T G C G T A A G T C G A T C T C A G G T C A C G T A A C G T A C G T C T G A A C T G A T C G A C G T A C G T A C G T
G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T

PAX4/MA0068.2/Jaspar

Match Rank:2
Score:0.67
Offset:3
Orientation:forward strand
Alignment:GACCRAATTAGG
---CTAATTAG-
A C T G C G T A A G T C G A T C T C A G G T C A C G T A A C G T A C G T C T G A A C T G A T C G
A C G T A C G T A C G T A G T C C A G T G C T A C G T A A C G T G C A T G T C A T C A G A C G T

PH0127.1_Nobox/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GACCRAATTAGG----
CGCGCTAATTAGGTATC
A C G T A C T G C G T A A G T C G A T C T C A G G T C A C G T A A C G T A C G T C T G A A C T G A T C G A C G T A C G T A C G T A C G T
T A G C A T C G A T G C T C A G A G T C G A C T C T G A C G T A G C A T A G C T C T G A T C A G A C T G G C A T C G T A G A C T A T G C

PH0133.1_Pax7/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GACCRAATTAGG----
CGAACTAATTAGTACTA
A C G T A C T G C G T A A G T C G A T C T C A G G T C A C G T A A C G T A C G T C T G A A C T G A T C G A C G T A C G T A C G T A C G T
G T A C T A C G G C T A G T A C G A T C G A C T T C G A C G T A G C A T A G C T C T G A C T A G A C G T G C T A T G A C C A G T C T G A

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:5
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GACCRAATTAGG
BTGACCTAVTTW--
A C G T A C G T A C T G C G T A A G T C G A T C T C A G G T C A C G T A A C G T A C G T C T G A A C T G A T C G
A G T C A C G T T C A G T C G A A G T C A G T C A G C T C T G A T C A G C G A T G C A T G C A T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GACCRAATTAGG
TGACCTARTT---
A C G T A C T G C G T A A G T C G A T C T C A G G T C A C G T A A C G T A C G T C T G A A C T G A T C G
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:7
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GACCRAATTAGG
TGACCTARTT---
A C G T A C T G C G T A A G T C G A T C T C A G G T C A C G T A A C G T A C G T C T G A A C T G A T C G
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T A C G T A C G T

TLX2/MA1577.1/Jaspar

Match Rank:8
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GACCRAATTAGG
---CTAATTAG-
A C T G C G T A A G T C G A T C T C A G G T C A C G T A A C G T A C G T C T G A A C T G A T C G
A C G T A C G T A C G T A G T C G A C T C T G A C G T A A C G T A C G T C G T A T C A G A C G T

RORC/MA1151.1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GACCRAATTAGG
TGACCTANTTAN-
A C G T A C T G C G T A A G T C G A T C T C A G G T C A C G T A A C G T A C G T C T G A A C T G A T C G
G A C T T C A G T G C A G A T C G T A C A G C T T G C A T A G C G C A T C G A T G C T A G A C T A C G T

PH0058.1_Hoxb3/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GACCRAATTAGG----
TGAGCTAATTAGTTGGA
A C G T A C T G C G T A A G T C G A T C T C A G G T C A C G T A A C G T A C G T C T G A A C T G A T C G A C G T A C G T A C G T A C G T
C G A T T C A G T G C A T A C G A T G C G A C T G T C A C G T A C G A T A C G T C T G A T A C G A G C T C A G T T C A G C T A G C G T A