Information for 13-GCCCAATAGA (Motif 33)

A C T G A G T C A G T C A G T C C G T A C G T A A C G T C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T C G T A A C G T A C G T A C T G A C T G A C T G A G T C
p-value:1e-3
log p-value:-7.219e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif6.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets164.0 +/- 0.0bp
Average Position of motif in Background88.9 +/- 98.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA13/MA0650.2/Jaspar

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GCCCAATAGA--
-CCCAATAAAAC
A C T G A G T C A G T C A G T C C G T A C G T A A C G T C G T A A C T G C G T A A C G T A C G T
A C G T T G A C T A G C A G T C G T C A C G T A A C G T C T G A C T G A C G T A G T C A G T A C

HOXD13/MA0909.2/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GCCCAATAGA--
-CCCAATAAAAC
A C T G A G T C A G T C A G T C C G T A C G T A A C G T C G T A A C T G C G T A A C G T A C G T
A C G T T A G C T A G C A G T C G T C A C T G A C G A T C G T A C T G A G T C A T G C A T G A C

PH0057.1_Hoxb13/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GCCCAATAGA-----
AACCCAATAAAATTCG
A C G T A C T G A G T C A G T C A G T C C G T A C G T A A C G T C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:4
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GCCCAATAGA-
-CCYMATAAAA
A C T G A G T C A G T C A G T C C G T A C G T A A C G T C G T A A C T G C G T A A C G T
A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

PB0133.1_Hic1_2/Jaspar

Match Rank:5
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------GCCCAATAGA
GGGTGTGCCCAAAAGG
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G T C C G T A C G T A A C G T C G T A A C T G C G T A
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

HOXB13/MA0901.2/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCCCAATAGA----
AACCAATAAAATTT
A C T G A G T C A G T C A G T C C G T A C G T A A C G T C G T A A C T G C G T A A C G T A C G T A C G T A C G T
C G T A C G T A G T A C G A T C G C T A C G T A A C G T C G T A G C T A G C T A G C T A G C A T G C A T G C A T

Isl1/MA1608.1/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCCCAATAGA-
ATCCATTAGCA
A C T G A G T C A G T C A G T C C G T A C G T A A C G T C G T A A C T G C G T A A C G T
C T G A A C G T G A T C G T A C C T G A G C A T G A C T G C T A C T A G A G T C T G C A

NFY(CCAAT)/Promoter/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCCCAATAGA
AGCCAATCGG
A C T G A G T C A G T C A G T C C G T A C G T A A C G T C G T A A C T G C G T A
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFYB/MA0502.2/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GCCCAATAGA
NTGGCCAATGAG
A C G T A C G T A C T G A G T C A G T C A G T C C G T A C G T A A C G T C G T A A C T G C G T A
A G T C A C G T C T A G T C A G G A T C G T A C G T C A T C G A C G A T T A C G T C G A T A C G

Ebf2/MA1604.1/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCCCAATAGA--
TTCCCAAGGGACT
A C G T A C T G A G T C A G T C A G T C C G T A C G T A A C G T C G T A A C T G C G T A A C G T A C G T
A C G T A G C T T A G C G A T C G A T C G T C A C T G A T C A G C T A G C T A G T C G A T G A C G A C T