Information for 5-RCAGACCYGG (Motif 12)

C T G A G T A C C G T A A C T G C G T A A G T C G T A C A G T C A C T G A C T G
Reverse Opposite:
A G T C G T A C C T A G A C T G A C T G A C G T A G T C A C G T A C T G A G C T
p-value:1e-3
log p-value:-9.187e+00
Information Content per bp:1.838
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif909.5
Percentage of Background Sequences with motif1.09%
Average Position of motif in Targets125.8 +/- 23.3bp
Average Position of motif in Background99.2 +/- 76.4bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:RCAGACCYGG
CCAGACRSVB
C T G A G T A C C G T A A C T G C G T A A G T C G T A C A G T C A C T G A C T G
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:RCAGACCYGG
CCAGACAG--
C T G A G T A C C G T A A C T G C G T A A G T C G T A C A G T C A C T G A C T G
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:RCAGACCYGG
BCAGACWA--
C T G A G T A C C G T A A C T G C G T A A G T C G T A C A G T C A C T G A C T G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----RCAGACCYGG--
CAAATCCAGACATCACA
A C G T A C G T A C G T A C G T A C G T C T G A G T A C C G T A A C T G C G T A A G T C G T A C A G T C A C T G A C T G A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---RCAGACCYGG
ATGCCAGACN---
A C G T A C G T A C G T C T G A G T A C C G T A A C T G C G T A A G T C G T A C A G T C A C T G A C T G
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T

HINFP/MA0131.2/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--RCAGACCYGG
NCGCGGACGTTG
A C G T A C G T C T G A G T A C C G T A A C T G C G T A A G T C G T A C A G T C A C T G A C T G
T G A C G T A C T A C G T A G C C T A G A T C G C G T A T A G C T A C G A G C T A C G T T A C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----RCAGACCYGG
AGGTGHCAGACA---
A C G T A C G T A C G T A C G T A C G T C T G A G T A C C G T A A C T G C G T A A G T C G T A C A G T C A C T G A C T G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T

ZSCAN4/MA1155.1/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-RCAGACCYGG----
TGCACACACTGAAAA
A C G T C T G A G T A C C G T A A C T G C G T A A G T C G T A C A G T C A C T G A C T G A C G T A C G T A C G T A C G T
G A C T T C A G A T G C C G T A A G T C C G T A G A T C T G C A G T A C A C G T A C T G C G T A G T C A C T G A C T G A

Smad4/MA1153.1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-RCAGACCYGG
TCTAGACA---
A C G T C T G A G T A C C G T A A C T G C G T A A G T C G T A C A G T C A C T G A C T G
A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T A C G T A C G T

Prdm15/MA1616.1/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--RCAGACCYGG---
AGGAAAACCTGGAGC
A C G T A C G T C T G A G T A C C G T A A C T G C G T A A G T C G T A C A G T C A C T G A C T G A C G T A C G T A C G T
C T G A C T A G A C T G T C G A T C G A C T G A C T G A A G T C T G A C G A C T C T A G C T A G T G C A T C A G G A T C