Information for 1-TAAGVTGGTCAC (Motif 1)

A C G T C T G A C G T A A T C G T A C G A C G T A C T G A C T G A C G T A G T C C G T A A G T C
Reverse Opposite:
A C T G A C G T A C T G C G T A G T A C A G T C C G T A A C G T A T G C A C G T A G C T G T C A
p-value:1e-7
log p-value:-1.655e+01
Information Content per bp:1.839
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif30.00%
Number of Background Sequences with motif72.3
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets102.3 +/- 66.2bp
Average Position of motif in Background97.5 +/- 81.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5/MA0014.3/Jaspar

Match Rank:1
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:TAAGVTGGTCAC----
----NNGGTCACGCTC
A C G T C T G A C G T A A T C G T A C G A C G T A C T G A C T G A C G T A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C A G C A T G T C A G A T C G G A C T A T G C C G T A A G T C T C A G A T G C G A C T A G T C

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TAAGVTGGTCAC
WAABTAGGTCAV
A C G T C T G A C G T A A T C G T A C G A C G T A C T G A C T G A C G T A G T C C G T A A G T C
C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.62
Offset:5
Orientation:forward strand
Alignment:TAAGVTGGTCAC
-----AGGTCA-
A C G T C T G A C G T A A T C G T A C G A C G T A C T G A C T G A C G T A G T C C G T A A G T C
A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T

RORB/MA1150.1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TAAGVTGGTCAC
-AATTAGGTCAC
A C G T C T G A C G T A A T C G T A C G A C G T A C T G A C T G A C G T A G T C C G T A A G T C
A C G T C G T A G C T A C G A T A C G T C T G A A C T G C T A G A G C T G A T C C T G A G A T C

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TAAGVTGGTCAC
-AAYTAGGTCA-
A C G T C T G A C G T A A T C G T A C G A C G T A C T G A C T G A C G T A G T C C G T A A G T C
A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TAAGVTGGTCAC
-AAYTAGGTCA-
A C G T C T G A C G T A A T C G T A C G A C G T A C T G A C T G A C G T A G T C C G T A A G T C
A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T

RORA/MA0071.1/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TAAGVTGGTCAC
-ATCAAGGTCA-
A C G T C T G A C G T A A T C G T A C G A C G T A C T G A C T G A C G T A G T C C G T A A G T C
A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T

NR2C1/MA1535.1/Jaspar

Match Rank:8
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TAAGVTGGTCAC
---CGAGGTCAC
A C G T C T G A C G T A A T C G T A C G A C G T A C T G A C T G A C G T A G T C C G T A A G T C
A C G T A C G T A C G T G T A C C T A G T C G A A C T G A C T G A C G T A T G C C T G A G A T C

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.61
Offset:4
Orientation:forward strand
Alignment:TAAGVTGGTCAC
----AAGGTCAC
A C G T C T G A C G T A A T C G T A C G A C G T A C T G A C T G A C G T A G T C C G T A A G T C
A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

FOXO6/MA0849.1/Jaspar

Match Rank:10
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:TAAGVTGGTCAC
-----TGTTTAC
A C G T C T G A C G T A A T C G T A C G A C G T A C T G A C T G A C G T A G T C C G T A A G T C
A C G T A C G T A C G T A C G T A C G T A G C T T C A G A C G T C A G T A C G T G C T A A G T C