Information for 11-GAAAGGGAATTA (Motif 12)

A C T G C G T A C G T A C G T A A C T G A C T G A C T G C G T A C G T A A C G T A C G T C G T A
Reverse Opposite:
A C G T C G T A C G T A A C G T A C G T A G T C A G T C A G T C A C G T A C G T A C G T A G T C
p-value:1e-4
log p-value:-9.567e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets185.0 +/- 0.0bp
Average Position of motif in Background143.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0121.1_Obox1/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GAAAGGGAATTA-----
TTAAGGGGATTAACTAC
A C T G C G T A C G T A C G T A A C T G A C T G A C T G C G T A C G T A A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
C A G T C G A T T C G A T C G A C T A G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C G T A G T A C C G A T G C T A A G T C

Crx/MA0467.1/Jaspar

Match Rank:2
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GAAAGGGAATTA-
--AAGAGGATTAG
A C T G C G T A C G T A C G T A A C T G A C T G A C T G C G T A C G T A A C G T A C G T C G T A A C G T
A C G T A C G T T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

HOXB7/MA1501.1/Jaspar

Match Rank:3
Score:0.66
Offset:4
Orientation:forward strand
Alignment:GAAAGGGAATTA--
----GGTAATTAAC
A C T G C G T A C G T A C G T A A C T G A C T G A C T G C G T A C G T A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T T C A G A C T G A G C T G T C A G T C A A C G T G C A T C T G A T C G A T A G C

PH0052.1_Hoxa5/Jaspar

Match Rank:4
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GAAAGGGAATTA------
--ACGGTAATTAGCTCAG
A C T G C G T A C G T A C G T A A C T G A C T G A C T G C G T A C G T A A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C G A T G A C C T A G A C T G G A C T G T C A G T C A A C G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A C T A G

PH0053.1_Hoxa6/Jaspar

Match Rank:5
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GAAAGGGAATTA------
--AAGGTAATTACCTAAT
A C T G C G T A C G T A C G T A A C T G A C T G A C T G C G T A C G T A A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C G A G T C A C T A G C A T G G A C T G T C A G C T A C A G T C A G T C T G A T G A C G A T C G A C T G T C A C G T A C A G T

PB0058.1_Sfpi1_1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GAAAGGGAATTA-
TTAAGAGGAAGTTA
A C G T A C T G C G T A C G T A C G T A A C T G A C T G A C T G C G T A C G T A A C G T A C G T C G T A A C G T
A G C T C G A T C G T A C G T A T C A G T C G A C T A G A C T G C G T A C G T A T A C G G A C T C G A T G T A C

PH0049.1_Hoxa2/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GAAAGGGAATTA------
--AAGGTAATTAGCTCAT
A C T G C G T A C G T A C G T A A C T G A C T G A C T G C G T A C G T A A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A T G C A C T A G A T C G G A C T T G C A G T C A A C G T A C G T C T G A T A C G G A T C G A C T G T A C C G T A C G A T

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GAAAGGGAATTA
NTAATBNAATTA
A C T G C G T A C G T A C G T A A C T G A C T G A C T G C G T A C G T A A C G T A C G T C G T A
G T A C G C A T C T G A C G T A G A C T A G C T C A T G T G C A C T G A A C G T G A C T C G T A

PITX2/MA1547.1/Jaspar

Match Rank:9
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:GAAAGGGAATTA-
-----GGGATTAN
A C T G C G T A C G T A C G T A A C T G A C T G A C T G C G T A C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C T G T C A G C T A G G T C A A C G T A G C T C G T A C A G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GAAAGGGAATTA
----NGGGATTA
A C T G C G T A C G T A C G T A A C T G A C T G A C T G C G T A C G T A A C G T A C G T C G T A
A C G T A C G T A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A