Information for 13-GCACGTTTAT (Motif 23)

A C T G A G T C C G T A A G T C A C T G C G A T A C G T A C G T C G T A A C G T
Reverse Opposite:
C G T A A C G T C G T A C G T A C G T A A G T C A C T G A C G T A C T G A G T C
p-value:1e-7
log p-value:-1.707e+01
Information Content per bp:1.960
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif5.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets66.0 +/- 46.5bp
Average Position of motif in Background98.1 +/- 51.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GCACGTTTAT
GCACGTAY--
A C T G A G T C C G T A A G T C A C T G C G A T A C G T A C G T C G T A A C G T
C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T

BARHL1/MA0877.2/Jaspar

Match Rank:2
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:GCACGTTTAT
--NCGTTTAN
A C T G A G T C C G T A A G T C A C T G C G A T A C G T A C G T C G T A A C G T
A C G T A C G T G T A C G A T C C T A G G C A T A C G T G C A T C G T A A T C G

HIF1A/MA1106.1/Jaspar

Match Rank:3
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--GCACGTTTAT
NNGCACGTNC--
A C G T A C G T A C T G A G T C C G T A A G T C A C T G C G A T A C G T A C G T C G T A A C G T
T A C G T A C G C A T G A G T C T C G A A G T C C T A G G A C T T C G A A T G C A C G T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GCACGTTTAT
GCACGTNC--
A C T G A G T C C G T A A G T C A C T G C G A T A C G T A C G T C G T A A C G T
A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C A C G T A C G T

BARHL2/MA0635.1/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GCACGTTTAT-
-ANCGTTTANN
A C T G A G T C C G T A A G T C A C T G C G A T A C G T A C G T C G T A A C G T A C G T
A C G T C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GCACGTTTAT
BGCACGTA---
A C G T A C T G A G T C C G T A A G T C A C T G C G A T A C G T A C G T C G T A A C G T
A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T A C G T A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:7
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCACGTTTAT
GCACGTACCC
A C T G A G T C C G T A A G T C A C T G C G A T A C G T A C G T C G T A A C G T
C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

HES6/MA1493.1/Jaspar

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GCACGTTTAT
GGCACGTGTT-
A C G T A C T G A G T C C G T A A G T C A C T G C G A T A C G T A C G T C G T A A C G T
A C T G T A C G T A G C C G T A A G T C T A C G A C G T A C T G G C A T G A C T A C G T

Npas2/MA0626.1/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCACGTTTAT
GGCACGTGTC-
A C G T A C T G A G T C C G T A A G T C A C T G C G A T A C G T A C G T C G T A A C G T
C T A G T A C G A G T C C G T A G T A C C T A G A C G T C T A G A C G T G T A C A C G T

Mlxip/MA0622.1/Jaspar

Match Rank:10
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCACGTTTAT
GCACGTGT--
A C T G A G T C C G T A A G T C A C T G C G A T A C G T A C G T C G T A A C G T
A C T G A G T C C G T A A G T C A C T G A C G T A C T G C A G T A C G T A C G T