Information for 12-CATTAAAAGAGC (Motif 15)

A G T C C G T A A C G T A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T A G T C A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C T G
p-value:1e-3
log p-value:-9.069e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets151.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3a/MA0151.1/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CATTAAAAGAGC
-ATTAAA-----
A G T C C G T A A C G T A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C T G A G T C
A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T

NKX6-3/MA1530.1/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CATTAAAAGAGC
CTCATTAAA-----
A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C T G A G T C
T A G C A G C T A G T C C G T A A C G T A G C T C T G A G C T A G C T A A C G T A C G T A C G T A C G T A C G T

HOXB13/MA0901.2/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CATTAAAAGAGC
AACCAATAAAATTT-
A C G T A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C T G A G T C
C G T A C G T A G T A C G A T C G C T A C G T A A C G T C G T A G C T A G C T A G C T A G C A T G C A T G C A T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CATTAAAAGAGC
YCATTAMC-----
A C G T A G T C C G T A A C G T A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C T G A G T C
A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C A C G T A C G T A C G T A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CATTAAAAGAGC
NGCAATTAAA-----
A C G T A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C T G A G T C
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T A C G T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CATTAAAAGAGC
GNCTATAAAAGG--
A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C T G A G T C
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:7
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CATTAAAAGAGC
ACGGCCATAAAATTAAT
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C T G A G T C
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

NKX6-2/MA0675.1/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CATTAAAAGAGC
CTAATTAA------
A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C T G A G T C
A T G C G A C T G T C A G C T A C G A T G C A T C T G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

Arid3b/MA0601.1/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CATTAAAAGAGC
NTAATTAATAT---
A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C T G A G T C
A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T A C G T A C G T A C G T

CDX2/MA0465.2/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CATTAAAAGAGC
AAGCAATAAAAA---
A C G T A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C T G A G T C
C T G A C G T A C T A G G A T C G T C A C T G A A G C T C G T A C G T A G C T A C G T A G C T A A C G T A C G T A C G T