Information for 16-AGAAATTTAATT (Motif 16)

C G T A A C T G C G T A C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A A C G T A C G T C G T A C G T A C G T A A C G T A C G T A C G T A G T C A C G T
p-value:1e-5
log p-value:-1.189e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PROP1/MA0715.1/Jaspar

Match Rank:1
Score:0.72
Offset:2
Orientation:forward strand
Alignment:AGAAATTTAATT-
--TAATTTAATTA
C G T A A C T G C G T A C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T
A C G T A C G T G C A T C G T A C T G A G C A T G A C T C G A T G T C A C T G A C G A T G A C T C G T A

LMX1B/MA0703.2/Jaspar

Match Rank:2
Score:0.71
Offset:3
Orientation:forward strand
Alignment:AGAAATTTAATT--
---ATTTTAATTAA
C G T A A C T G C G T A C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C G A T C G A T A G C T A C G T C G T A C G T A A C G T A C G T G T C A G T C A

PHOX2A/MA0713.1/Jaspar

Match Rank:3
Score:0.71
Offset:2
Orientation:forward strand
Alignment:AGAAATTTAATT-
--TAATTTAATTA
C G T A A C T G C G T A C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T
A C G T A C G T G C A T C T G A C T G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A

PH0120.1_Nkx6-3/Jaspar

Match Rank:4
Score:0.69
Offset:1
Orientation:forward strand
Alignment:AGAAATTTAATT------
-GAAAATTAATTACTTTG
C G T A A C T G C G T A C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T A G T G C A G C A T C G T A G C T A C G A T G A C T C G T A C G T A C G A T A C G T C T G A T G A C A G C T A C G T A G C T A C T G

Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer

Match Rank:5
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:AGAAATTTAATT--
--TAATTNAATTAA
C G T A A C T G C G T A C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A C G T A A C G T A G C T A C G T C T G A C G T A A C G T A C G T C G T A G C T A

PH0118.1_Nkx6-1_1/Jaspar

Match Rank:6
Score:0.68
Offset:1
Orientation:forward strand
Alignment:AGAAATTTAATT------
-GAAAATTAATTACTTCG
C G T A A C T G C G T A C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T A G T G C A G C T A C G T A C G T A C G A T A G C T C G T A C G T A C G A T A C G T C T G A G T A C G A C T A G C T A G T C A T C G

PHOX2B/MA0681.2/Jaspar

Match Rank:7
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-AGAAATTTAATT---
NNATAATTTGATTANN
A C G T C G T A A C T G C G T A C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C G T A C G A T G C T A G C A T C G T A G C T A G C A T C G A T C G A T C T A G C G T A G C A T G C A T C G T A C G T A G C T A

Lhx3/MA0135.1/Jaspar

Match Rank:8
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AGAAATTTAATT-
GATTAATTAATTT
C G T A A C T G C G T A C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T
T C A G C T G A G C A T C G A T C T G A C G T A A C G T C G A T C G T A C G T A C G A T A C G T G C A T

Arid3a/MA0151.1/Jaspar

Match Rank:9
Score:0.68
Offset:5
Orientation:reverse strand
Alignment:AGAAATTTAATT
-----TTTAAT-
C G T A A C T G C G T A C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:10
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:AGAAATTTAATT--
--TAATYNRATTAR
C G T A A C T G C G T A C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C G T A C G T A G A C T A G C T G C A T T C G A T C G A A C G T G A C T C G T A C T A G