Information for 5-AACCCCTAAA (Motif 15)

G T C A C G T A T A G C A G T C G T A C G T A C A G C T C G T A C T G A C G T A
Reverse Opposite:
C G A T A G C T A C G T C T G A A C T G C A T G C T A G A T C G A C G T A C G T
p-value:1e-7
log p-value:-1.787e+01
Information Content per bp:1.847
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.79%
Number of Background Sequences with motif139.8
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets97.3 +/- 48.3bp
Average Position of motif in Background103.7 +/- 49.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AACCCCTAAA-
-CCYMATAAAA
G T C A C G T A T A G C A G T C G T A C G T A C A G C T C G T A C T G A C G T A A C G T
A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:2
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AACCCCTAAA-
-VGCCATAAAA
G T C A C G T A T A G C A G T C G T A C G T A C A G C T C G T A C T G A C G T A A C G T
A C G T T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:3
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AACCCCTAAA---
-NGYCATAAAWCH
G T C A C G T A T A G C A G T C G T A C G T A C A G C T C G T A C T G A C G T A A C G T A C G T A C G T
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

HOXA13/MA0650.2/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AACCCCTAAA--
-CCCAATAAAAC
G T C A C G T A T A G C A G T C G T A C G T A C A G C T C G T A C T G A C G T A A C G T A C G T
A C G T T G A C T A G C A G T C G T C A C G T A A C G T C T G A C T G A C G T A G T C A G T A C

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AACCCCTAAA--
--CYHATAAAAN
G T C A C G T A T A G C A G T C G T A C G T A C A G C T C G T A C T G A C G T A A C G T A C G T
A C G T A C G T T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AACCCCTAAA-
-NCYAATAAAA
G T C A C G T A T A G C A G T C G T A C G T A C A G C T C G T A C T G A C G T A A C G T
A C G T C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

PH0004.1_Nkx3-2/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AACCCCTAAA----
CATAACCACTTAACAAC
A C G T A C G T A C G T G T C A C G T A T A G C A G T C G T A C G T A C A G C T C G T A C T G A C G T A A C G T A C G T A C G T A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

Nkx3-2/MA0122.3/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AACCCCTAAA-
ATAACCACTTAAA
A C G T A C G T G T C A C G T A T A G C A G T C G T A C G T A C A G C T C G T A C T G A C G T A A C G T
C G T A C G A T C G T A C G T A T G A C G A T C G C T A G T A C G C A T G A C T G C T A C G T A G C T A

PH0057.1_Hoxb13/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AACCCCTAAA-----
AACCCAATAAAATTCG
A C G T G T C A C G T A T A G C A G T C G T A C G T A C A G C T C G T A C T G A C G T A A C G T A C G T A C G T A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

PH0064.1_Hoxb9/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AACCCCTAAA-----
AGAGCCATAAAATTCG
A C G T G T C A C G T A T A G C A G T C G T A C G T A C A G C T C G T A C T G A C G T A A C G T A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G