| p-value: | 1e-5 |
| log p-value: | -1.238e+01 |
| Information Content per bp: | 1.717 |
| Number of Target Sequences with motif | 3.0 |
| Percentage of Target Sequences with motif | 33.33% |
| Number of Background Sequences with motif | 304.9 |
| Percentage of Background Sequences with motif | 0.37% |
| Average Position of motif in Targets | 91.2 +/- 45.3bp |
| Average Position of motif in Background | 105.3 +/- 67.3bp |
| Strand Bias (log2 ratio + to - strand density) | 0.0 |
| Multiplicity (# of sites on avg that occur together) | 1.33 |
| Motif File: | file (matrix) reverse opposite |
| SVG Files for Logos: | forward logo reverse opposite |
PB0178.1_Sox8_2/Jaspar
| Match Rank: | 1 |
| Score: | 0.68 |
| Offset: | 0 |
| Orientation: | reverse strand |
| Alignment: | AGAAGGATGAAT-- NNTNTCATGAATGT |
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Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer
| Match Rank: | 2 |
| Score: | 0.66 |
| Offset: | 6 |
| Orientation: | forward strand |
| Alignment: | AGAAGGATGAAT---- ------ATGAATATTC |
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Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer
| Match Rank: | 3 |
| Score: | 0.66 |
| Offset: | 0 |
| Orientation: | reverse strand |
| Alignment: | AGAAGGATGAAT TGAATTATGCAT |
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|
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Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer
| Match Rank: | 4 |
| Score: | 0.66 |
| Offset: | 6 |
| Orientation: | forward strand |
| Alignment: | AGAAGGATGAAT---- ------ATGMATATDC |
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|
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PB0170.1_Sox17_2/Jaspar
| Match Rank: | 5 |
| Score: | 0.65 |
| Offset: | 1 |
| Orientation: | reverse strand |
| Alignment: | AGAAGGATGAAT------ -NTTNTATGAATGTGNNC |
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|
|
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer
| Match Rank: | 6 |
| Score: | 0.64 |
| Offset: | 3 |
| Orientation: | reverse strand |
| Alignment: | AGAAGGATGAAT--- ---ATGATKGATGRC |
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|
|
PH0138.1_Pitx2/Jaspar
| Match Rank: | 7 |
| Score: | 0.63 |
| Offset: | -1 |
| Orientation: | forward strand |
| Alignment: | -AGAAGGATGAAT---- TGAAGGGATTAATCATC |
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|
PH0148.1_Pou3f3/Jaspar
| Match Rank: | 8 |
| Score: | 0.62 |
| Offset: | 1 |
| Orientation: | forward strand |
| Alignment: | AGAAGGATGAAT------ -AAAATATGCATAATAAA |
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HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer
| Match Rank: | 9 |
| Score: | 0.61 |
| Offset: | 4 |
| Orientation: | forward strand |
| Alignment: | AGAAGGATGAAT-- ----TGATKGATGR |
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PH0130.1_Otx2/Jaspar
| Match Rank: | 10 |
| Score: | 0.61 |
| Offset: | -1 |
| Orientation: | forward strand |
| Alignment: | -AGAAGGATGAAT---- TGTAGGGATTAATTGTC |
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