Information for 12-TGCTATGGCG (Motif 20)

A C G T A C T G A G T C A C G T C G T A A C G T A C T G A C T G A G T C A C T G
Reverse Opposite:
A G T C A C T G A G T C A G T C C G T A A C G T C G T A A C T G A G T C C G T A
p-value:1e-3
log p-value:-7.942e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.88%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets25.0 +/- 0.0bp
Average Position of motif in Background74.1 +/- 38.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RFX3/MA0798.2/Jaspar

Match Rank:1
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----TGCTATGGCG
CGGTTGCTATGGCA
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C T G A C T G A G T C A C T G
A G T C A C T G C T A G A G C T G A C T C T A G G A T C G A C T T C G A C A G T C T A G T C A G G T A C C T G A

RFX1/MA0509.2/Jaspar

Match Rank:2
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----TGCTATGGCG
CTGTTGCTATGGCA
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C T G A C T G A G T C A C T G
A G T C C A G T C T A G A G C T G A C T C T A G G A T C A G C T C T G A C A G T C T A G T C A G G T A C C T G A

YY2/MA0748.2/Jaspar

Match Rank:3
Score:0.70
Offset:2
Orientation:forward strand
Alignment:TGCTATGGCG---
--AGATGGCGGCG
A C G T A C T G A G T C A C G T C G T A A C G T A C T G A C T G A G T C A C T G A C G T A C G T A C G T
A C G T A C G T G T C A T A C G T C G A A G C T T A C G C T A G G A T C A T C G T A C G G T A C T A C G

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----TGCTATGGCG
NNCGTTGCTATGGNN
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C T G A C T G A G T C A C T G
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

PB0054.1_Rfx3_1/Jaspar

Match Rank:5
Score:0.66
Offset:-9
Orientation:reverse strand
Alignment:---------TGCTATGGCG----
NTNNNNNGTTGCTANGGNNCANA
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C T G A C T G A G T C A C T G A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:6
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TGCTATGGCG
NCCGTTGCTANGNGN
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C T G A C T G A G T C A C T G
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TGCTATGGCG-
NGTTGCCATGGCAA
A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C T G A C T G A G T C A C T G A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TGCTATGGCG
CTGTTGCTAGGS--
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C T G A C T G A G T C A C T G
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TGCTATGGCG-
GGTTGCCATGGCAA
A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C T G A C T G A G T C A C T G A C G T
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---TGCTATGGCG--
KGTTGCCATGGCAAC
A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C T G A C T G A G T C A C T G A C G T A C G T
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C