Information for 14-CGGTCAGGGATA (Motif 14)

A G T C A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C G T C G T A
Reverse Opposite:
A C G T C G T A A C G T A G T C A G T C A G T C A C G T A C T G C G T A A G T C A G T C A C T G
p-value:1e-4
log p-value:-1.031e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets110.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CGGTCAGGGATA
AGGTCAAGGTCA
A G T C A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C G T C G T A
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CGGTCAGGGATA
AGGTCAAGGTCA
A G T C A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C G T C G T A
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CGGTCAGGGATA
AGGTCA------
A G T C A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C G T C G T A
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T

NR2C1/MA1535.1/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CGGTCAGGGATA
CGAGGTCAC-----
A C G T A C G T A G T C A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C G T C G T A
G T A C C T A G T C G A A C T G A C T G A C G T A T G C C T G A G A T C A C G T A C G T A C G T A C G T A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:CGGTCAGGGATA----
-----AAGGATATNTN
A G T C A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CGGTCAGGGATA
AGRGGTCA------
A C G T A C G T A G T C A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C G T C G T A
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer

Match Rank:7
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------CGGTCAGGGATA
NRBCARRGGTCA------
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C G T C G T A
T C A G T C A G A C G T G T A C G C T A T C A G C T G A A C T G A C T G A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PAX5/MA0014.3/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CGGTCAGGGATA
NNGGTCACGCTC-
A C G T A G T C A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C G T C G T A
T C A G C A T G T C A G A T C G G A C T A T G C C G T A A G T C T C A G A T G C G A C T A G T C A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:9
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------CGGTCAGGGATA
AGAGCGGGGTCAAGTA--
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C G T C G T A
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CGGTCAGGGATA
-GGTCTGGCAT-
A G T C A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G C G T A A C G T C G T A
A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T