Information for 3-AAACAAAGGGGC (Motif 3)

G T C A C G T A C G T A A G T C C G T A C G T A C G T A C T A G C T A G C T A G A C T G A T G C
Reverse Opposite:
A T C G A G T C A G T C A G T C A G T C C G A T A C G T A C G T A C T G A C G T C G A T A C G T
p-value:1e-6
log p-value:-1.544e+01
Information Content per bp:1.846
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif18.75%
Number of Background Sequences with motif38.9
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets74.0 +/- 59.2bp
Average Position of motif in Background102.0 +/- 62.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX15/MA1152.1/Jaspar

Match Rank:1
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-AAACAAAGGGGC
AAAACAATAG---
A C G T G T C A C G T A C G T A A G T C C G T A C G T A C G T A C T A G C T A G C T A G A C T G A T G C
C G T A C T G A C T G A G C T A A G T C C G T A G T C A G C A T C T G A T C A G A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:2
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-AAACAAAGGGGC
AAAACAAAGG---
A C G T G T C A C G T A C G T A A G T C C G T A C G T A C G T A C T A G C T A G C T A G A C T G A T G C
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

SOX4/MA0867.2/Jaspar

Match Rank:3
Score:0.77
Offset:0
Orientation:forward strand
Alignment:AAACAAAGGGGC
GAACAAAGGG--
G T C A C G T A C G T A A G T C C G T A C G T A C G T A C T A G C T A G C T A G A C T G A T G C
C T A G T C G A C G T A A T G C T C G A T C G A G C T A C T A G T C A G T C A G A C G T A C G T

Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer

Match Rank:4
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--AAACAAAGGGGC
BMRVACAAWGGV--
A C G T A C G T G T C A C G T A C G T A A G T C C G T A C G T A C G T A C T A G C T A G C T A G A C T G A T G C
A T G C T G A C C T G A T A C G C G T A A G T C C G T A C G T A C G T A C T A G T C A G T G C A A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:5
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---AAACAAAGGGGC
CTCACACAATGGCGC
A C G T A C G T A C G T G T C A C G T A C G T A A G T C C G T A C G T A C G T A C T A G C T A G C T A G A C T G A T G C
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:6
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:AAACAAAGGGGC
-RACAAWGG---
G T C A C G T A C G T A A G T C C G T A C G T A C G T A C T A G C T A G C T A G A C T G A T G C
A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:7
Score:0.75
Offset:0
Orientation:forward strand
Alignment:AAACAAAGGGGC
RAACAATGGN--
G T C A C G T A C G T A A G T C C G T A C G T A C G T A C T A G C T A G C T A G A C T G A T G C
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-AAACAAAGGGGC
AAAACAATGG---
A C G T G T C A C G T A C G T A A G T C C G T A C G T A C G T A C T A G C T A G C T A G A C T G A T G C
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:9
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----AAACAAAGGGGC-
AGAAGAACAAAGGACTA
A C G T A C G T A C G T A C G T G T C A C G T A C G T A A G T C C G T A C G T A C G T A C T A G C T A G C T A G A C T G A T G C A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

SOX10/MA0442.2/Jaspar

Match Rank:10
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-AAACAAAGGGGC
AAAACAAAGAA--
A C G T G T C A C G T A C G T A A G T C C G T A C G T A C G T A C T A G C T A G C T A G A C T G A T G C
C T G A C T G A T G C A G C T A A G T C C G T A G C T A G C T A A C T G T C G A T G C A A C G T A C G T