Information for 11-CCTTAAACTAGT (Motif 16)

A G T C A G T C A C G T A C G T C G T A C G T A C G T A A G T C A C G T C G T A A C T G A C G T
Reverse Opposite:
C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C G T C G T A C G T A A C T G A C T G
p-value:1e-4
log p-value:-9.619e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets186.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CCTTAAACTAGT
-CCAAAAATAG-
A G T C A G T C A C G T A C G T C G T A C G T A C G T A A G T C A C G T C G T A A C T G A C G T
A C G T G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T

RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CCTTAAACTAGT
TGACCTTGACCT---
A C G T A C G T A C G T A G T C A G T C A C G T A C G T C G T A C G T A C G T A A G T C A C G T C G T A A C T G A C G T
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T

PH0040.1_Hmbox1/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CCTTAAACTAGT----
GANGTTAACTAGTTTNN
A C G T A G T C A G T C A C G T A C G T C G T A C G T A C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

MEF2A/MA0052.4/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCTTAAACTAGT--
TTCTAAAAATAGAAA
A C G T A G T C A G T C A C G T A C G T C G T A C G T A C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C G T
C G A T C A G T G A T C G A C T C G T A C G T A C G T A C G T A C G T A G C A T C T G A C T A G G T C A G C T A G C T A

HMBOX1/MA0895.1/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCTTAAACTAGT
--GTTAACTAGN
A G T C A G T C A C G T A C G T C G T A C G T A C G T A A G T C A C G T C G T A A C T G A C G T
A C G T A C G T A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:6
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCTTAAACTAGT
TGACCTTGACCT---
A C G T A C G T A C G T A G T C A G T C A C G T A C G T C G T A C G T A C G T A A G T C A C G T C G T A A C T G A C G T
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T A C G T A C G T

PH0168.1_Hnf1b/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCTTAAACTAGT---
AGCTGTTAACTAGCCGT
A C G T A C G T A G T C A G T C A C G T A C G T C G T A C G T A C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T
C G T A A C T G A G T C A C G T C T A G G C A T G A C T C G T A G C T A A G T C A G C T C G T A T C A G A G T C G A T C A T C G A G C T

MEF2C/MA0497.1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CCTTAAACTAGT-
ATGCTAAAAATAGAA
A C G T A C G T A G T C A G T C A C G T A C G T C G T A C G T A C G T A A G T C A C G T C G T A A C T G A C G T A C G T
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCTTAAACTAGT
DCYAAAAATAGM
A G T C A G T C A C G T A C G T C G T A C G T A C G T A A G T C A C G T C G T A A C T G A C G T
C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C

NR6A1/MA1541.1/Jaspar

Match Rank:10
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CCTTAAACTAGT-
NTGACCTTGAACTTGAN
A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C G T C G T A C G T A C G T A A G T C A C G T C G T A A C T G A C G T A C G T
G C A T G A C T T C A G T G C A G T A C G T A C C A G T G C A T T C A G T C G A G T C A G T A C A C G T G A C T T A C G T C G A T G A C