Information for 16-AGCATGGATGCC (Motif 18)

C G T A A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C C G T A A C G T A G T C A G T C C G T A A C G T A C T G A G T C A C G T
p-value:1e-4
log p-value:-9.244e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets104.0 +/- 0.0bp
Average Position of motif in Background140.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZFP42/MA1651.1/Jaspar

Match Rank:1
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----AGCATGGATGCC----
GTTCCAAAATGGCTGCCTCCG
A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T
A T C G G C A T G C A T G T A C G T A C C T G A C G T A T C G A C T G A A G C T T A C G A C T G G T A C A C G T A T C G G A T C A G T C G A C T A T G C A T G C T C A G

PB0159.1_Rfx4_2/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGCATGGATGCC--
TACCCTAGTTACCGA
A C G T C G T A A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C A C G T A C G T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

YY1/MA0095.2/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGCATGGATGCC
CAAGATGGCGGC-
A C G T C G T A A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:4
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGCATGGATGCC
ATGATKGATGRC
C G T A A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

PB0178.1_Sox8_2/Jaspar

Match Rank:5
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AGCATGGATGCC
NNTNTCATGAATGT-
A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:6
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----AGCATGGATGCC
GTCATGCHTGRCTGS-
A C G T A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T

PB0158.1_Rfx3_2/Jaspar

Match Rank:7
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----AGCATGGATGCC------
ACTGACCCTTGGTTACCACAAAG
A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G T C A C G T A T C G G C T A A T G C T A C G A T G C G C A T C G A T T C A G A C T G C G A T C A G T C G T A G A T C T G A C T C G A T G A C T C G A T C G A C G T A A T C G

HIC2/MA0738.1/Jaspar

Match Rank:8
Score:0.55
Offset:7
Orientation:forward strand
Alignment:AGCATGGATGCC----
-------ATGCCCACC
C G T A A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGCATGGATGCC----
CTACTTGGATACGGAAT
A C G T C G T A A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T
A T G C A C G T T C G A A T G C C A G T G A C T T C A G A C T G C G T A A C G T C G T A G A T C T A C G T A C G C G T A C G T A G C A T

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.53
Offset:7
Orientation:forward strand
Alignment:AGCATGGATGCC----
-------ATGCCAACC
C G T A A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C