Information for 2-AGCAGAADCGGA (Motif 2)

C G T A A C T G A G T C C G T A A C T G C T G A C G T A C A T G A G T C A C T G A T C G C G T A
Reverse Opposite:
A C G T A T G C G T A C A C T G G A T C C G A T A G C T G T A C C G A T A C T G A G T C A C G T
p-value:1e-6
log p-value:-1.503e+01
Information Content per bp:1.788
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif30.00%
Number of Background Sequences with motif116.9
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets58.3 +/- 34.2bp
Average Position of motif in Background98.6 +/- 82.7bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGCAGAADCGGA
CAGCC--------
A C G T C G T A A C T G A G T C C G T A A C T G C T G A C G T A C A T G A G T C A C T G A T C G C G T A
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF317/MA1593.1/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----AGCAGAADCGGA
TAACAGCAGACT----
A C G T A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C T G C T G A C G T A C A T G A G T C A C T G A T C G C G T A
C G A T T C G A C G T A T G A C C G T A C T A G G T A C C G T A C T A G G C T A G A T C G C A T A C G T A C G T A C G T A C G T

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:3
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---AGCAGAADCGGA
CACAGCAGGGG----
A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C T G C T G A C G T A C A T G A G T C A C T G A T C G C G T A
T A G C T C G A A G T C T G C A T A C G A G T C T C G A A T C G A C T G T A C G T C A G A C G T A C G T A C G T A C G T

OSR2/MA1646.1/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGCAGAADCGGA
AAACAGAAGCAG-
A C G T C G T A A C T G A G T C C G T A A C T G C T G A C G T A C A T G A G T C A C T G A T C G C G T A
G T C A G T C A T G C A T A G C C T G A T A C G C G T A T C G A C T A G A G T C G T C A T C A G A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:5
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----AGCAGAADCGGA-
NNNNAGCAGCTGCTGAN
A C G T A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C T G C T G A C G T A C A T G A G T C A C T G A T C G C G T A A C G T
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G

NHLH1/MA0048.2/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AGCAGAADCGGA
CGCAGCTGCG--
C G T A A C T G A G T C C G T A A C T G C T G A C G T A C A T G A G T C A C T G A T C G C G T A
T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:7
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AGCAGAADCGGA
HCAGCTGDTN----
A C G T A C G T C G T A A C T G A G T C C G T A A C T G C T G A C G T A C A T G A G T C A C T G A T C G C G T A
G T C A A G T C C G T A A C T G G T A C G C A T C T A G C G A T A C G T C A G T A C G T A C G T A C G T A C G T

Zic2/MA1629.1/Jaspar

Match Rank:8
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----AGCAGAADCGGA
CTCACAGCAGGGGG---
A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C T G C T G A C G T A C A T G A G T C A C T G A T C G C G T A
T G A C C A G T T G A C G C T A T A G C G T C A T A C G A G T C C T G A C A T G A T C G C T A G T C A G T C A G A C G T A C G T A C G T

ASCL1(var.2)/MA1631.1/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--AGCAGAADCGGA
NNGGCAGGTGCNN-
A C G T A C G T C G T A A C T G A G T C C G T A A C T G C T G A C G T A C A T G A G T C A C T G A T C G C G T A
T A C G T A C G C T A G T A C G A T G C T C G A A T C G T A C G G A C T T A C G A T G C G C A T T A C G A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:10
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----AGCAGAADCGGA
ADGGYAGYAGCATCT--
A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C C G T A A C T G C T G A C G T A C A T G A G T C A C T G A T C G C G T A
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T A C G T A C G T