Information for 5-CABGAHTAGHAA (Motif 6)

G T A C C G T A A C G T A C T G C G T A G C T A G C A T C G T A A C T G G A C T C T G A C G T A
Reverse Opposite:
C G A T A G C T C G T A G T A C A C G T C G T A C A G T C G A T A G T C T C G A C G A T C A T G
p-value:1e-4
log p-value:-1.099e+01
Information Content per bp:1.683
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif1063.9
Percentage of Background Sequences with motif1.39%
Average Position of motif in Targets114.2 +/- 55.6bp
Average Position of motif in Background97.5 +/- 68.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CABGAHTAGHAA-
CTCATGAATATTCAT
A C G T A C G T G T A C C G T A A C G T A C T G C G T A G C T A G C A T C G T A A C T G G A C T C T G A C G T A A C G T
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:2
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CABGAHTAGHAA
--GGATTAGC--
G T A C C G T A A C G T A C T G C G T A G C T A G C A T C G T A A C T G G A C T C T G A C G T A
A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T

OTX2/MA0712.2/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CABGAHTAGHAA
AAGGGATTAGAA-
A C G T G T A C C G T A A C G T A C T G C G T A G C T A G C A T C G T A A C T G G A C T C T G A C G T A
G C T A C G T A C T A G C T A G C T A G G T C A C A G T G C A T C G T A C T A G C G T A C G T A A C G T

Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer

Match Rank:4
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CABGAHTAGHAA
NHRTCACGACDN----
A C G T A C G T A C G T A C G T G T A C C G T A A C G T A C T G C G T A G C T A G C A T C G T A A C T G G A C T C T G A C G T A
T C A G G C T A T C A G C A G T T G A C G T C A A G T C A T C G T G C A G T A C C A G T G A T C A C G T A C G T A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CABGAHTAGHAA
-RGGATTAR---
G T A C C G T A A C G T A C T G C G T A G C T A G C A T C G T A A C T G G A C T C T G A C G T A
A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CABGAHTAGHAA
VRGGATTARN--
G T A C C G T A A C G T A C T G C G T A G C T A G C A T C G T A A C T G G A C T C T G A C G T A
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T A C G T

GATA1/MA0035.4/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CABGAHTAGHAA
NNAGATTAGAN-
G T A C C G T A A C G T A C T G C G T A G C T A G C A T C G T A A C T G G A C T C T G A C G T A
C G T A G C A T C G T A C A T G C G T A C G A T G C A T G C T A C A T G C G T A G C T A A C G T

PITX1/MA0682.2/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CABGAHTAGHAA
-NGGATTAN---
G T A C C G T A A C G T A C T G C G T A G C T A G C A T C G T A A C T G G A C T C T G A C G T A
A C G T C A T G T C A G C A T G G T C A A C G T A C G T C G T A C T A G A C G T A C G T A C G T

PB0185.1_Tcf1_2/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CABGAHTAGHAA
TTGCCCGGATTAGG--
A C G T A C G T A C G T A C G T G T A C C G T A A C G T A C T G C G T A G C T A G C A T C G T A A C T G G A C T C T G A C G T A
C G A T A C G T T C A G G A T C T A G C A G T C T A C G A C T G C T G A C A G T A C G T C G T A C A T G C T A G A C G T A C G T

OTX1/MA0711.1/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CABGAHTAGHAA
-CGGATTAN---
G T A C C G T A A C G T A C T G C G T A G C T A G C A T C G T A A C T G G A C T C T G A C G T A
A C G T T A G C T A C G A T C G G T C A A C G T G C A T C G T A C T G A A C G T A C G T A C G T