Information for 11-CATGGCTGTCTG (Motif 19)

A G T C C G T A A C G T A C T G A T C G A G T C C G A T A C T G A G C T A G T C A C G T A C T G
Reverse Opposite:
A G T C G T C A A C T G C T G A A G T C C G T A A C T G A T G C G T A C C G T A A C G T A C T G
p-value:1e-6
log p-value:-1.432e+01
Information Content per bp:1.922
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif7.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets80.6 +/- 56.5bp
Average Position of motif in Background88.4 +/- 57.8bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CATGGCTGTCTG-
GTCATGCHTGRCTGS
A C G T A C G T A G T C C G T A A C G T A C T G A T C G A G T C C G A T A C T G A G C T A G T C A C G T A C T G A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.68
Offset:5
Orientation:forward strand
Alignment:CATGGCTGTCTG-
-----CTGTCTGG
A G T C C G T A A C G T A C T G A T C G A G T C C G A T A C T G A G C T A G T C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.68
Offset:3
Orientation:forward strand
Alignment:CATGGCTGTCTG-
---VBSYGTCTGG
A G T C C G T A A C G T A C T G A T C G A G T C C G A T A C T G A G C T A G T C A C G T A C T G A C G T
A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CATGGCTGTCTG-
NGTCACGCTTGGCTGC
A C G T A C G T A C G T A G T C C G T A A C G T A C T G A T C G A G T C C G A T A C T G A G C T A G T C A C G T A C T G A C G T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

ZFP42/MA1651.1/Jaspar

Match Rank:5
Score:0.63
Offset:-7
Orientation:forward strand
Alignment:-------CATGGCTGTCTG--
GTTCCAAAATGGCTGCCTCCG
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A T C G A G T C C G A T A C T G A G C T A G T C A C G T A C T G A C G T A C G T
A T C G G C A T G C A T G T A C G T A C C T G A C G T A T C G A C T G A A G C T T A C G A C T G G T A C A C G T A T C G G A T C A G T C G A C T A T G C A T G C T C A G

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CATGGCTGTCTG------
-NNTNNTGTCTGGNNTNG
A G T C C G T A A C G T A C T G A T C G A G T C C G A T A C T G A G C T A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.61
Offset:5
Orientation:forward strand
Alignment:CATGGCTGTCTG-
-----TWGTCTGV
A G T C C G T A A C G T A C T G A T C G A G T C C G A T A C T G A G C T A G T C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

YY2/MA0748.2/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CATGGCTGTCTG
AGATGGCGGCG--
A C G T A G T C C G T A A C G T A C T G A T C G A G T C C G A T A C T G A G C T A G T C A C G T A C T G
G T C A T A C G T C G A A G C T T A C G C T A G G A T C A T C G T A C G G T A C T A C G A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CATGGCTGTCTG
----GCTGTG--
A G T C C G T A A C G T A C T G A T C G A G T C C G A T A C T G A G C T A G T C A C G T A C T G
A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T

ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer

Match Rank:10
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CATGGCTGTCTG---
---VCCTCTCTGDDY
A G T C C G T A A C G T A C T G A T C G A G T C C G A T A C T G A G C T A G T C A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T T G A C T A G C G T A C G C A T A G T C A C G T A T G C C G A T T A C G C G A T C A G T A G T C