Information for 3-GACATTTAAGAG (Motif 3)

C T A G C G T A A G T C C G T A A C G T A C G T A C G T C G T A C G T A A C T G C G T A A C T G
Reverse Opposite:
A G T C A C G T A G T C A C G T A C G T C G T A C G T A C G T A A C G T A C T G A C G T A G T C
p-value:1e-12
log p-value:-2.765e+01
Information Content per bp:1.963
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif30.77%
Number of Background Sequences with motif12.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets104.0 +/- 43.2bp
Average Position of motif in Background86.3 +/- 50.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GACATTTAAGAG----
NAATTTTACGAGNTNN
C T A G C G T A A G T C C G T A A C G T A C G T A C G T C G T A C G T A A C T G C G T A A C T G A C G T A C G T A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GACATTTAAGAG----
ANATTTTACGAGNNNN
C T A G C G T A A G T C C G T A A C G T A C G T A C G T C G T A C G T A A C T G C G T A A C T G A C G T A C G T A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

HOXC13/MA0907.1/Jaspar

Match Rank:3
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GACATTTAAGAG-
--NTTTTACGAGN
C T A G C G T A A G T C C G T A A C G T A C G T A C G T C G T A C G T A A C T G C G T A A C T G A C G T
A C G T A C G T C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C

BARHL2/MA0635.1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GACATTTAAGAG
ANCGTTTANN--
C T A G C G T A A G T C C G T A A C G T A C G T A C G T C G T A C G T A A C T G C G T A A C T G
C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C A C G T A C G T

Hoxa11/MA0911.1/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GACATTTAAGAG-
-ANTTTTACGACC
C T A G C G T A A G T C C G T A A C G T A C G T A C G T C G T A C G T A A C T G C G T A A C T G A C G T
A C G T G C T A C G T A C G A T C G A T G C A T G C A T G C T A G A T C C T A G T C G A A G T C G A T C

PH0085.1_Irx4/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GACATTTAAGAG-
AATATACATGTAAAACA
A C G T A C G T A C G T A C G T C T A G C G T A A G T C C G T A A C G T A C G T A C G T C G T A C G T A A C T G C G T A A C T G A C G T
C G T A C G T A G C A T C T G A C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G T C A C G T A C G T A A G T C C G T A

NR4A1/MA1112.2/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GACATTTAAGAG
NNTGACCTTTNN---
A C G T A C G T A C G T C T A G C G T A A G T C C G T A A C G T A C G T A C G T C G T A C G T A A C T G C G T A A C T G
G A C T A G C T G A C T T C A G T G C A G T A C G T A C A G C T G A C T G A C T C G T A G T C A A C G T A C G T A C G T

PH0086.1_Irx5/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GACATTTAAGAG-
AATATACATGTAAAATT
A C G T A C G T A C G T A C G T C T A G C G T A A G T C C G T A A C G T A C G T A C G T C G T A C G T A A C T G C G T A A C T G A C G T
C G A T C G T A C G A T G C T A C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A G T C A C G T A C G T A A C G T C G A T

PH0082.1_Irx2/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GACATTTAAGAG-
TAAATACATGTAAAATT
A C G T A C G T A C G T A C G T C T A G C G T A A G T C C G T A A C G T A C G T A C G T C G T A C G T A A C T G C G T A A C T G A C G T
C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T

Nkx3-2/MA0122.3/Jaspar

Match Rank:10
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GACATTTAAGAG-----
----NTTAAGTGGTTNN
C T A G C G T A A G T C C G T A A C G T A C G T A C G T C G T A C G T A A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T G C A T C G A T C T G A C G T A C A T G C G A T C T A G A C T G G C A T G C A T G C T A G C A T