Information for 1-CTCAGTCGGG (Motif 3)

A T G C C G A T A G T C C G T A A T C G C G A T A G T C A T C G C T A G A C T G
Reverse Opposite:
G T A C A G T C A T G C A C T G C G T A A T G C A C G T A C T G C G T A A T C G
p-value:1e-8
log p-value:-2.069e+01
Information Content per bp:1.804
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.47%
Number of Background Sequences with motif61.6
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets118.7 +/- 49.5bp
Average Position of motif in Background113.8 +/- 50.3bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL002.1_INR/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CTCAGTCGGG
-TCAGTCTT-
A T G C C G A T A G T C C G T A A T C G C G A T A G T C A T C G C T A G A C T G
A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CTCAGTCGGG
-CCAGACAG-
A T G C C G A T A G T C C G T A A T C G C G A T A G T C A T C G C T A G A C T G
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CTCAGTCGGG-
-CCAGACRSVB
A T G C C G A T A G T C C G T A A T C G C G A T A G T C A T C G C T A G A C T G A C G T
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

MYB/MA0100.3/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CTCAGTCGGG
NNCAGTTGNN
A T G C C G A T A G T C C G T A A T C G C G A T A G T C A T C G C T A G A C T G
C A T G C T G A A G T C T G C A A C T G C G A T G A C T T C A G T C A G C A G T

Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTCAGTCGGG--
CHCAGCRGGRGG
A T G C C G A T A G T C C G T A A T C G C G A T A G T C A T C G C T A G A C T G A C G T A C G T
T G A C G T C A A G T C G C T A C T A G A G T C C T G A C A T G A C T G C T A G T A C G T C A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CTCAGTCGGG
DCTCAGCAGG-
A C G T A T G C C G A T A G T C C G T A A T C G C G A T A G T C A T C G C T A G A C T G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTCAGTCGGG--
CACAGCAGGGGG
A T G C C G A T A G T C C G T A A T C G C G A T A G T C A T C G C T A G A C T G A C G T A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0150.1_Mybl1_2/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CTCAGTCGGG--
CACGGCAGTTGGTNN
A C G T A C G T A C G T A T G C C G A T A G T C C G T A A T C G C G A T A G T C A T C G C T A G A C T G A C G T A C G T
T G A C C G T A A G T C C A T G C T A G A G T C T C G A A C T G A C G T C A G T C T A G C T A G A C G T T A G C T A C G

ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CTCAGTCGGG--
GCACAYAGTAGGKCY
A C G T A C G T A C G T A T G C C G A T A G T C C G T A A T C G C G A T A G T C A T C G C T A G A C T G A C G T A C G T
C T A G G A T C T C G A A T G C T C G A A G C T C T G A A C T G A C G T C T G A A C T G A C T G A C G T A G T C G A T C

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CTCAGTCGGG
CACAGN----
A T G C C G A T A G T C C G T A A T C G C G A T A G T C A T C G C T A G A C T G
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T