Information for 1-TAWGTWTTTCAC (Motif 1)

C A G T C G T A C G A T A C T G A C G T C G T A C G A T A C G T C A G T A T G C C T G A A G T C
Reverse Opposite:
A C T G A G C T A T C G G C T A C G T A G C T A C G A T G T C A T A G C C G T A A C G T G C T A
p-value:1e-4
log p-value:-1.116e+01
Information Content per bp:1.693
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif44.44%
Number of Background Sequences with motif1536.0
Percentage of Background Sequences with motif1.87%
Average Position of motif in Targets116.0 +/- 47.5bp
Average Position of motif in Background96.9 +/- 71.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0132.1_Pax6/Jaspar

Match Rank:1
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----TAWGTWTTTCAC
TGATTAATTAATTGAC
A C G T A C G T A C G T A C G T C A G T C G T A C G A T A C T G A C G T C G T A C G A T A C G T C A G T A T G C C T G A A G T C
A G C T C T A G T G C A G A C T G C A T T C G A G C T A C G A T A C G T C G T A C T G A A C G T A C G T T A C G C G T A G T A C

PH0028.1_En1/Jaspar

Match Rank:2
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TAWGTWTTTCAC
GNATTAATTAGTTNNC
A C G T A C G T A C G T A C G T C A G T C G T A C G A T A C T G A C G T C G T A C G A T A C G T C A G T A T G C C T G A A G T C
A C T G G A T C T G C A G A C T G A C T C G T A C G T A A G C T A G C T C T G A C T A G A C G T A C G T A G T C A T C G A G T C

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TAWGTWTTTCAC---
---SSAATCCACANN
C A G T C G T A C G A T A C T G A C G T C G T A C G A T A C G T C A G T A T G C C T G A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

PH0020.1_Dlx1/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TAWGTWTTTCAC
ATTAATTANCTCAN
A C G T A C G T C A G T C G T A C G A T A C T G A C G T C G T A C G A T A C G T C A G T A T G C C T G A A G T C
T C G A G A C T G A C T T C G A C G T A C G A T A C G T C T G A G A T C G A T C A C G T A G T C C T G A T A C G

CEBPA/MA0102.4/Jaspar

Match Rank:5
Score:0.54
Offset:3
Orientation:forward strand
Alignment:TAWGTWTTTCAC-----
---TTATTGCACAATAT
C A G T C G T A C G A T A C T G A C G T C G T A C G A T A C G T C A G T A T G C C T G A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C A G T T C G A G C A T C A G T C A T G G A T C C T G A G A T C G T C A C G T A A G C T G C T A G C A T

PH0110.1_Nkx1-2/Jaspar

Match Rank:6
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------TAWGTWTTTCAC
GTGCACTAATTAGTGCA-
A C G T A C G T A C G T A C G T A C G T A C G T C A G T C G T A C G A T A C T G A C G T C G T A C G A T A C G T C A G T A T G C C T G A A G T C
C A T G C A G T A C T G T G A C T C G A G A T C G A C T G T C A C G T A C G A T A C G T C T G A C T A G A C G T C T A G A T G C G C T A A C G T

PH0147.1_Pou3f2/Jaspar

Match Rank:7
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----TAWGTWTTTCAC
NNNACTAATTAATTANC
A C G T A C G T A C G T A C G T A C G T C A G T C G T A C G A T A C T G A C G T C G T A C G A T A C G T C A G T A T G C C T G A A G T C
G A T C C T G A G T C A T G C A G A T C C A G T G T C A C G T A C G A T C A G T C T G A C T G A C A G T G C A T G C T A G C A T A T G C

PH0149.1_Pou3f4/Jaspar

Match Rank:8
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----TAWGTWTTTCAC-
GANTTAATTAATTAANN
A C G T A C G T A C G T A C G T C A G T C G T A C G A T A C T G A C G T C G T A C G A T A C G T C A G T A T G C C T G A A G T C A C G T
C T A G G C T A G T C A G A C T C G A T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G T C A C G T A A C G T G A C T

CEBPD/MA0836.2/Jaspar

Match Rank:9
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TAWGTWTTTCAC-----
----TATTGCACAATAT
C A G T C G T A C G A T A C T G A C G T C G T A C G A T A C G T C A G T A T G C C T G A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T T C G A G A C T C A G T C A T G G A T C C T G A G A T C G T C A C T G A A G C T G C T A G C A T

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TAWGTWTTTCAC--
--GGGATTGCATNN
C A G T C G T A C G A T A C T G A C G T C G T A C G A T A C G T C A G T A T G C C T G A A G T C A C G T A C G T
A C G T A C G T T C A G A T C G A C T G C T G A A C G T A C G T C A T G G T A C C T G A A G C T A G T C A G C T