Information for 21-AAAAACCCTAAA (Motif 30)

C G T A C T G A C T G A T G C A C G T A G T A C G T A C G A T C G C A T C T G A G T C A C G T A
Reverse Opposite:
A C G T A C G T G A C T C G T A C T A G C A T G C A T G G C A T A C G T A G C T A G C T C G A T
p-value:1e-2
log p-value:-6.461e+00
Information Content per bp:1.762
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.65%
Number of Background Sequences with motif165.2
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets95.9 +/- 61.3bp
Average Position of motif in Background97.2 +/- 53.2bp
Strand Bias (log2 ratio + to - strand density)3.8
Multiplicity (# of sites on avg that occur together)2.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:1
Score:0.62
Offset:3
Orientation:forward strand
Alignment:AAAAACCCTAAA---
---NGYCATAAAWCH
C G T A C T G A C T G A T G C A C G T A G T A C G T A C G A T C G C A T C T G A G T C A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

PH0064.1_Hoxb9/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AAAAACCCTAAA-----
-AGAGCCATAAAATTCG
C G T A C T G A C T G A T G C A C G T A G T A C G T A C G A T C G C A T C T G A G T C A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.59
Offset:3
Orientation:forward strand
Alignment:AAAAACCCTAAA-
---VGCCATAAAA
C G T A C T G A C T G A T G C A C G T A G T A C G T A C G A T C G C A T C T G A G T C A C G T A A C G T
A C G T A C G T A C G T T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A

ONECUT3/MA0757.1/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AAAAACCCTAAA
AAAAAATCAATAAT
A C G T A C G T C G T A C T G A C T G A T G C A C G T A G T A C G T A C G A T C G C A T C T G A G T C A C G T A
T C G A C T G A C G T A G C T A C T G A C T G A G A C T G T A C T C G A C G T A C G A T C G T A G C T A G C A T

PH0047.1_Hoxa11/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AAAAACCCTAAA----
TAAAGTCGTAAAACAT
C G T A C T G A C T G A T G C A C G T A G T A C G T A C G A T C G C A T C T G A G T C A C G T A A C G T A C G T A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

PB0135.1_Hoxa3_2/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AAAAACCCTAAA--
AAAAACCATTAAGG
C G T A C T G A C T G A T G C A C G T A G T A C G T A C G A T C G C A T C T G A G T C A C G T A A C G T A C G T
T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

PH0066.1_Hoxc11/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AAAAACCCTAAA----
TAAAGTCGTAAAATAG
C G T A C T G A C T G A T G C A C G T A G T A C G T A C G A T C G C A T C T G A G T C A C G T A A C G T A C G T A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:AAAAACCCTAAA-
---KGCCATAAAA
C G T A C T G A C T G A T G C A C G T A G T A C G T A C G A T C G C A T C T G A G T C A C G T A A C G T
A C G T A C G T A C G T C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A

BARHL2/MA0635.1/Jaspar

Match Rank:9
Score:0.55
Offset:6
Orientation:forward strand
Alignment:AAAAACCCTAAA----
------GCTAAACGGT
C G T A C T G A C T G A T G C A C G T A G T A C G T A C G A T C G C A T C T G A G T C A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T

ONECUT2/MA0756.1/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AAAAACCCTAAA
AAAAAATCGATAAT
A C G T A C G T C G T A C T G A C T G A T G C A C G T A G T A C G T A C G A T C G C A T C T G A G T C A C G T A
T C G A C T G A C G T A G C T A C T G A C T G A A C G T G T A C T C A G G C T A G C A T C G T A G C T A G C A T