Information for 3-TGCTCGTA (Motif 15)

A C G T A C T G A G T C A C G T A G T C A C T G A C G T C G T A
Reverse Opposite:
A C G T C G T A A G T C A C T G G T C A A C T G A G T C C G T A
p-value:1e-7
log p-value:-1.613e+01
Information Content per bp:1.957
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif22.8
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets114.3 +/- 44.5bp
Average Position of motif in Background122.2 +/- 55.6bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:TGCTCGTA----
-GCTCGTAAAAA
A C G T A C T G A G T C A C G T A G T C A C T G A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--TGCTCGTA------
AAACCTCGTAAAATTT
A C G T A C G T A C G T A C T G A G T C A C G T A G T C A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:3
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TGCTCGTA
BGCACGTA
A C G T A C T G A G T C A C G T A G T C A C T G A C G T C G T A
A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A

HIF1A/MA1106.1/Jaspar

Match Rank:4
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TGCTCGTA-
NNGCACGTNC
A C G T A C G T A C T G A G T C A C G T A G T C A C T G A C G T C G T A A C G T
T A C G T A C G C A T G A G T C T C G A A G T C C T A G G A C T T C G A A T G C

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:5
Score:0.69
Offset:1
Orientation:forward strand
Alignment:TGCTCGTA---
-GCACGTACCC
A C G T A C T G A G T C A C G T A G T C A C T G A C G T C G T A A C G T A C G T A C G T
A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:6
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TGCTCGTA-
-GCACGTAY
A C G T A C T G A G T C A C G T A G T C A C T G A C G T C G T A A C G T
A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T

PH0068.1_Hoxc13/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TGCTCGTA------
AAAGCTCGTAAAATTT
A C G T A C G T A C G T A C T G A G T C A C G T A G T C A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

GCM1/MA0646.1/Jaspar

Match Rank:8
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TGCTCGTA-
CATGCGGGTAC
A C G T A C G T A C G T A C T G A G T C A C G T A G T C A C T G A C G T C G T A A C G T
A G T C T C G A G C A T T C A G G T A C C A T G A C T G A T C G A G C T T C G A A T G C

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TGCTCGTA-
-GCACGTNC
A C G T A C T G A G T C A C G T A G T C A C T G A C G T C G T A A C G T
A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C

TCFL5/MA0632.2/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TGCTCGTA-
GTGCGCGTGA
A C G T A C G T A C T G A G T C A C G T A G T C A C T G A C G T C G T A A C G T
C A T G C A G T A T C G A G T C C T A G A G T C C T A G G A C T A C T G T G C A