Information for 8-TTTTGAATGGGA (Motif 9)

A C G T A C G T A C G T A C G T A C T G C G T A G T C A A C G T C T A G A C T G A C T G C G T A
Reverse Opposite:
A C G T A G T C A G T C A G T C C G T A A C G T A C G T A G T C C G T A C G T A C G T A C G T A
p-value:1e-13
log p-value:-3.005e+01
Information Content per bp:1.950
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif5.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets107.5 +/- 51.2bp
Average Position of motif in Background83.2 +/- 42.5bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:TTTTGAATGGGA
ATTTGAATT---
A C G T A C G T A C G T A C G T A C T G C G T A G T C A A C G T C T A G A C T G A C T G C G T A
C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T A C G T

NKX2-2/MA1645.1/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TTTTGAATGGGA-
NNNTTGAGTGGNNN
A C G T A C G T A C G T A C G T A C G T A C T G C G T A G T C A A C G T C T A G A C T G A C T G C G T A A C G T
C G A T C G A T A G T C A G C T C A G T T A C G C G T A C A T G C G A T C T A G A C T G G C A T C G A T C T G A

PB0170.1_Sox17_2/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TTTTGAATGGGA--
NTTNTATGAATGTGNNC
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A G T C A A C G T C T A G A C T G A C T G C G T A A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

PB0114.1_Egr1_2/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TTTTGAATGGGA----
TGCGGAGTGGGACTGG
A C G T A C G T A C G T A C G T A C T G C G T A G T C A A C G T C T A G A C T G A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TTTTGAATGGGA
-TTTGAAACCG-
A C G T A C G T A C G T A C G T A C T G C G T A G T C A A C G T C T A G A C T G A C T G C G T A
A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G A C G T

NKX2-5/MA0063.2/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TTTTGAATGGGA
NNTTGAGTGNN-
A C G T A C G T A C G T A C G T A C T G C G T A G T C A A C G T C T A G A C T G A C T G C G T A
C G A T A G C T C G A T G C A T C T A G C G T A C T A G G A C T C T A G A C T G A G C T A C G T

PB0068.1_Sox1_1/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TTTTGAATGGGA-
NNNTATTGAATTGNNN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A G T C A A C G T C T A G A C T G A C T G C G T A A C G T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

PB0132.1_Hbp1_2/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TTTTGAATGGGA---
NNTNNACAATGGGANNN
A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A G T C A A C G T C T A G A C T G A C T G C G T A A C G T A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

PH0026.1_Duxbl/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---TTTTGAATGGGA--
NNNNGTTGATTGGGTCG
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A G T C A A C G T C T A G A C T G A C T G C G T A A C G T A C G T
A T G C C G T A A G T C A G T C T C A G G A C T C G A T C T A G C T G A A C G T A C G T C T A G T C A G T C A G G A C T G A T C T C A G

Dux/MA0611.1/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TTTTGAATGGGA
--TTGATTGN--
A C G T A C G T A C G T A C G T A C T G C G T A G T C A A C G T C T A G A C T G A C T G C G T A
A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G A C G T A C G T