Information for 15-TTTTAGGGTTTT (Motif 27)

A C G T A C G T A C G T C G A T C G T A A C T G A C T G C T A G A C G T A G C T A C G T A C G T
Reverse Opposite:
C G T A C G T A T C G A G T C A G A T C G T A C G T A C A C G T C G T A C G T A C G T A C G T A
p-value:1e-4
log p-value:-1.151e+01
Information Content per bp:1.885
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.05%
Number of Background Sequences with motif63.2
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets93.5 +/- 51.7bp
Average Position of motif in Background96.2 +/- 42.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)2.88
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0064.1_Hoxb9/Jaspar

Match Rank:1
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TTTTAGGGTTTT
NGANTTTTATGGCTCN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G T A A C T G A C T G C T A G A C G T A G C T A C G T A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TTTTAGGGTTTT
TTTTATGGCB--
A C G T A C G T A C G T C G A T C G T A A C T G A C T G C T A G A C G T A G C T A C G T A C G T
G C A T C G A T G C A T G A C T G C T A A G C T C A T G C T A G A T G C A G T C A C G T A C G T

PH0047.1_Hoxa11/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TTTTAGGGTTTT-
NNGTTTTACGACTTTA
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G T A A C T G A C T G C T A G A C G T A G C T A C G T A C G T A C G T
G T C A G A C T C T A G C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C G T A

PH0066.1_Hoxc11/Jaspar

Match Rank:4
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---TTTTAGGGTTTT-
NNNTTTTACGACNTTN
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G T A A C T G A C T G C T A G A C G T A G C T A C G T A C G T A C G T
G T A C G A C T C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C T G A

BARX2/MA1471.1/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TTTTAGGGTTTT-
-NTAATGGTTTTN
A C G T A C G T A C G T C G A T C G T A A C T G A C T G C T A G A C G T A G C T A C G T A C G T A C G T
A C G T A T C G G C A T C T G A G T C A A G C T A C T G C T A G A C G T G C A T C G A T G C A T G A C T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TTTTAGGGTTTT
DGWTTTATGRCN--
A C G T A C G T A C G T A C G T A C G T C G A T C G T A A C T G A C T G C T A G A C G T A G C T A C G T A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T A C G T

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TTTTAGGGTTTT
TTTTATGGCM--
A C G T A C G T A C G T C G A T C G T A A C T G A C T G C T A G A C G T A G C T A C G T A C G T
C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C A C G T A C G T

Nkx3-2/MA0122.3/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TTTTAGGGTTTT-
NTTAAGTGGTTNN
A C G T A C G T A C G T C G A T C G T A A C T G A C T G C T A G A C G T A G C T A C G T A C G T A C G T
C G A T G C A T C G A T C T G A C G T A C A T G C G A T C T A G A C T G G C A T G C A T G C T A G C A T

HOXD12/MA0873.1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TTTTAGGGTTTT
NTTTTACGACT--
A C G T A C G T A C G T A C G T C G A T C G T A A C T G A C T G C T A G A C G T A G C T A C G T A C G T
C A G T C G A T G C A T A G C T G C A T C T G A A G T C A T C G T C G A A G T C A G C T A C G T A C G T

PB0136.1_IRC900814_2/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TTTTAGGGTTTT----
TTTTACGACTTTCCAT
A C G T A C G T A C G T C G A T C G T A A C T G A C T G C T A G A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T A G C T G C A T A G C T T C G A G A T C C T A G C T G A G T A C C A G T A G C T G A C T G A T C T G A C T C G A G A C T