Information for 1-GAGCCTATTAAT (Motif 1)

A C T G C T G A A C T G A G T C A T G C C G A T C T G A A C G T A C G T C G T A C G T A A C G T
Reverse Opposite:
C G T A C G A T A C G T C G T A G T C A A G C T C G T A A T C G A C T G A G T C A G C T A G T C
p-value:1e-7
log p-value:-1.623e+01
Information Content per bp:1.926
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif57.14%
Number of Background Sequences with motif731.1
Percentage of Background Sequences with motif0.71%
Average Position of motif in Targets42.8 +/- 43.5bp
Average Position of motif in Background96.6 +/- 87.4bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3b/MA0601.1/Jaspar

Match Rank:1
Score:0.69
Offset:4
Orientation:forward strand
Alignment:GAGCCTATTAAT---
----ATATTAATTAA
A C T G C T G A A C T G A G T C A T G C C G A T C T G A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

LHX2/MA0700.2/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GAGCCTATTAAT
-AACCAATTAAT
A C T G C T G A A C T G A G T C A T G C C G A T C T G A A C G T A C G T C G T A C G T A A C G T
A C G T C G T A C G T A A T G C G A T C G C T A G C T A C G A T C G A T G C T A C G T A G C A T

PH0119.1_Nkx6-1_2/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GAGCCTATTAAT----
GANGTAATTAATTANN
A C T G C T G A A C T G A G T C A T G C C G A T C T G A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T C A G C T G A T G C A T C A G G A C T T G C A C G T A C G A T G A C T C T G A G C T A C G A T C G A T C T G A A G T C A G C T

PH0120.1_Nkx6-3/Jaspar

Match Rank:4
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GAGCCTATTAAT-------
--GAAAATTAATTACTTTG
A C T G C T G A A C T G A G T C A T G C C G A T C T G A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G T G C A G C A T C G T A G C T A C G A T G A C T C G T A C G T A C G A T A C G T C T G A T G A C A G C T A C G T A G C T A C T G

PH0005.1_Barhl1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GAGCCTATTAAT--
AACAACCAATTAATTC
A C G T A C G T A C T G C T G A A C T G A G T C A T G C C G A T C T G A A C G T A C G T C G T A C G T A A C G T A C G T A C G T
G T C A C T G A G T A C T C G A C T G A A T G C G A T C C T G A G C T A A C G T G A C T C G T A C T G A A C G T C G A T G A T C

PH0118.1_Nkx6-1_1/Jaspar

Match Rank:6
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GAGCCTATTAAT-------
--GAAAATTAATTACTTCG
A C T G C T G A A C T G A G T C A T G C C G A T C T G A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G T G C A G C T A C G T A C G T A C G A T A G C T C G T A C G T A C G A T A C G T C T G A G T A C G A C T A G C T A G T C A T C G

PH0150.1_Pou4f3/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GAGCCTATTAAT----
GACNTCATTAATAANN
A C T G C T G A A C T G A G T C A T G C C G A T C T G A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C T A G C T G A T G A C G A T C C A G T G T A C C G T A C G A T C G A T C G T A C T G A C G A T C G T A G T C A A G T C C G A T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GAGCCTATTAAT
--NGCAATTAAA
A C T G C T G A A C T G A G T C A T G C C G A T C T G A A C G T A C G T C G T A C G T A A C G T
A C G T A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

BSX/MA0876.1/Jaspar

Match Rank:9
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GAGCCTATTAAT
---CCAATTAA-
A C T G C T G A A C T G A G T C A T G C C G A T C T G A A C G T A C G T C G T A C G T A A C G T
A C G T A C G T A C G T T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A A C G T

PH0054.1_Hoxa7_1/Jaspar

Match Rank:10
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GAGCCTATTAAT-------
--GNNNATTAATTAANNCG
A C T G C T G A A C T G A G T C A T G C C G A T C T G A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G T G A C G C A T G C A T C T G A C A G T G A C T G C T A C G T A G C A T C G A T C T G A G T C A G A T C C A G T A G T C A T C G