Information for 9-GGCCCAATTC (Motif 28)

A C T G A C T G A G T C A G T C A G T C C G T A C G T A A C G T A C G T A G T C
Reverse Opposite:
A C T G C G T A C G T A A C G T A C G T A C T G A C T G A C T G A G T C A G T C
p-value:1e-3
log p-value:-7.304e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif18.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets133.0 +/- 0.0bp
Average Position of motif in Background114.9 +/- 84.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MSX2/MA0708.1/Jaspar

Match Rank:1
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GGCCCAATTC-
---CCAATTAA
A C T G A C T G A G T C A G T C A G T C C G T A C G T A A C G T A C G T A G T C A C G T
A C G T A C G T A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GGCCCAATTC
BTGACCTAVTTW
A C G T A C G T A C T G A C T G A G T C A G T C A G T C C G T A C G T A A C G T A C G T A G T C
A G T C A C G T T C A G T C G A A G T C A G T C A G C T C T G A T C A G C G A T G C A T G C A T

MSX1/MA0666.1/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GGCCCAATTC-
---CCAATTAG
A C T G A C T G A G T C A G T C A G T C C G T A C G T A A C G T A C G T A G T C A C G T
A C G T A C G T A C G T A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:4
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----GGCCCAATTC
NNHYTGACCTAGWTT
A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C A G T C A G T C C G T A C G T A A C G T A C G T A G T C
A C G T G A T C G A C T G A T C A C G T A C T G T C G A A G T C A G T C A G C T C T G A T C A G C G A T C G A T G C A T

RORB/MA1150.1/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GGCCCAATTC
NTGACCTAATT-
A C G T A C G T A C T G A C T G A G T C A G T C A G T C C G T A C G T A A C G T A C G T A G T C
C T A G G A C T C T A G T C G A G A T C T G A C G A C T T G C A G C T A C G A T G C A T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGCCCAATTC
TGACCTARTT-
A C G T A C T G A C T G A G T C A G T C A G T C C G T A C G T A A C G T A C G T A G T C
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGCCCAATTC
TGACCTARTT-
A C G T A C T G A C T G A G T C A G T C A G T C C G T A C G T A A C G T A C G T A G T C
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T

RORC/MA1151.1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GGCCCAATTC-
TGACCTANTTAN
A C G T A C T G A C T G A G T C A G T C A G T C C G T A C G T A A C G T A C G T A G T C A C G T
G A C T T C A G T G C A G A T C G T A C A G C T T G C A T A G C G C A T C G A T G C T A G A C T

LHX2/MA0700.2/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GGCCCAATTC--
-AACCAATTAAT
A C T G A C T G A G T C A G T C A G T C C G T A C G T A A C G T A C G T A G T C A C G T A C G T
A C G T C G T A C G T A A T G C G A T C G C T A G C T A C G A T C G A T G C T A C G T A G C A T

Msx3/MA0709.1/Jaspar

Match Rank:10
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GGCCCAATTC-
---CCAATTAA
A C T G A C T G A G T C A G T C A G T C C G T A C G T A A C G T A C G T A G T C A C G T
A C G T A C G T A C G T T A G C G A T C T C G A T G C A A C G T G A C T C G T A T C G A