Information for 1-SCYYATTGWKCW (Motif 1)

A T G C A G T C G A C T A G T C C G T A A C G T A C G T A C T G C G A T A C T G A G T C G C A T
Reverse Opposite:
C G A T A C T G G T A C C G T A A G T C G T C A C G T A A C G T C T A G C T A G A C T G A T C G
p-value:1e-5
log p-value:-1.227e+01
Information Content per bp:1.799
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif394.1
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets154.7 +/- 18.6bp
Average Position of motif in Background107.0 +/- 181.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX9/MA0077.1/Jaspar

Match Rank:1
Score:0.77
Offset:2
Orientation:forward strand
Alignment:SCYYATTGWKCW
--CCATTGTTC-
A T G C A G T C G A C T A G T C C G T A A C G T A C G T A C T G C G A T A C T G A G T C G C A T
A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T

SOX8/MA0868.2/Jaspar

Match Rank:2
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:SCYYATTGWKCW
--CCATTGTTCT
A T G C A G T C G A C T A G T C C G T A A C G T A C G T A C T G C G A T A C T G A G T C G C A T
A C G T A C G T A T G C G A T C C G T A C A G T C G A T T C A G C G A T G A C T G A T C A C G T

PB0183.1_Sry_2/Jaspar

Match Rank:3
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-SCYYATTGWKCW----
CNNNTATTGTTCNNNNN
A C G T A T G C A G T C G A C T A G T C C G T A A C G T A C G T A C T G C G A T A C T G A G T C G C A T A C G T A C G T A C G T A C G T
A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.75
Offset:1
Orientation:forward strand
Alignment:SCYYATTGWKCW
-NCCATTGTTC-
A T G C A G T C G A C T A G T C C G T A A C G T A C G T A C T G C G A T A C T G A G T C G C A T
A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:5
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-SCYYATTGWKCW----
AATCAATTGTTCCGCTA
A C G T A T G C A G T C G A C T A G T C C G T A A C G T A C G T A C T G C G A T A C T G A G T C G C A T A C G T A C G T A C G T A C G T
T G A C T C A G A G C T A T G C G C T A C G T A A G C T C G A T A T C G C G A T A G C T A T G C T G A C A C T G G A T C C A G T T C G A

PB0132.1_Hbp1_2/Jaspar

Match Rank:6
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---SCYYATTGWKCW--
TGTTCCCATTGTGTACT
A C G T A C G T A C G T A T G C A G T C G A C T A G T C C G T A A C G T A C G T A C T G C G A T A C T G A G T C G C A T A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

PB0065.1_Sox15_1/Jaspar

Match Rank:7
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--SCYYATTGWKCW---
ANNTCTATTGTTCNNNA
A C G T A C G T A T G C A G T C G A C T A G T C C G T A A C G T A C G T A C T G C G A T A C T G A G T C G C A T A C G T A C G T A C G T
C G T A C G T A T C G A A G C T G A T C G C A T C G T A C G A T C G A T C T A G C G A T G A C T G T A C G C T A G T A C G A C T C G T A

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.72
Offset:2
Orientation:forward strand
Alignment:SCYYATTGWKCW
--CCATTGTTYB
A T G C A G T C G A C T A G T C C G T A A C G T A C G T A C T G C G A T A C T G A G T C G C A T
A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

SOX13/MA1120.1/Jaspar

Match Rank:9
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:SCYYATTGWKCW
NNCCATTGTNN-
A T G C A G T C G A C T A G T C C G T A A C G T A C G T A C T G C G A T A C T G A G T C G C A T
C G A T A C T G A G T C G A T C C G T A G A C T C G A T T C A G G A C T A G C T G A C T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:10
Score:0.71
Offset:1
Orientation:forward strand
Alignment:SCYYATTGWKCW
-CTCATTGTC--
A T G C A G T C G A C T A G T C C G T A A C G T A C G T A C T G C G A T A C T G A G T C G C A T
A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T