Information for 13-GCAGCGGCTTCT (Motif 18)

A C T G A G T C C G T A A C T G A G T C A C T G A C T G A G T C A C G T A C G T A G T C A C G T
Reverse Opposite:
C G T A A C T G G T C A C G T A A C T G G T A C A G T C A C T G A G T C A C G T A C T G A G T C
p-value:1e-7
log p-value:-1.756e+01
Information Content per bp:1.944
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.27%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets93.1 +/- 29.6bp
Average Position of motif in Background116.9 +/- 41.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)4.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:1
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GCAGCGGCTTCT
ADGGYAGYAGCATCT
A C G T A C G T A C G T A C T G A G T C C G T A A C T G A G T C A C T G A C T G A G T C A C G T A C G T A G T C A C G T
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T

Ascl2/MA0816.1/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GCAGCGGCTTCT
AGCAGCTGCT---
A C G T A C T G A G T C C G T A A C T G A G T C A C T G A C T G A G T C A C G T A C G T A G T C A C G T
C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T A C G T A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCAGCGGCTTCT
AGCAGCTGCTNN-
A C G T A C T G A G T C C G T A A C T G A G T C A C T G A C T G A G T C A C G T A C G T A G T C A C G T
C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C A C G T

Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCAGCGGCTTCT
DGCAGCTGCYSS-
A C G T A C T G A G T C C G T A A C T G A G T C A C T G A C T G A G T C A C G T A C G T A G T C A C G T
C T G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G T C G A T C A T G C A T G C A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:5
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GCAGCGGCTTCT-
CTCAGCAGCTGCTACTG
A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C T G A G T C A C T G A C T G A G T C A C G T A C G T A G T C A C G T A C G T
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G

NHLH1/MA0048.2/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCAGCGGCTTCT
CGCAGCTGCG---
A C G T A C T G A G T C C G T A A C T G A G T C A C T G A C T G A G T C A C G T A C G T A G T C A C G T
T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G A C G T A C G T A C G T

MYOG/MA0500.2/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCAGCGGCTTCT
CAGCAGCTGCTG--
A C G T A C G T A C T G A G T C C G T A A C T G A G T C A C T G A C T G A G T C A C G T A C G T A G T C A C G T
T A G C C T G A T C A G A G T C T C G A A C T G T G A C A G C T T C A G A G T C G A C T A T C G A C G T A C G T

OSR2/MA1646.1/Jaspar

Match Rank:8
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:GCAGCGGCTTCT----
----NNGCTTCTGTNN
A C T G A G T C C G T A A C T G A G T C A C T G A C T G A G T C A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C C A G T T C A G G A T C A G C T G C A T A T G C G A C T A T C G A C G T C A G T C A G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCAGCGGCTTCT
NCAGCTGCTG--
A C T G A G T C C G T A A C T G A G T C A C T G A C T G A G T C A C G T A C G T A G T C A C G T
T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G A C G T A C G T

ASCL1/MA1100.2/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCAGCGGCTTCT
NGCAGCTGCN---
A C G T A C T G A G T C C G T A A C T G A G T C A C T G A C T G A G T C A C G T A C G T A G T C A C G T
T C A G T C A G G A T C G T C A A T C G T A G C C G A T C T A G A G T C A G T C A C G T A C G T A C G T