Information for 2-AGAAGGATGAAT (Motif 2)

C G T A C T A G C G T A G T C A C A T G A C T G C G T A C G A T A C T G G T C A G T C A A C G T
Reverse Opposite:
C G T A A C G T A C G T G T A C C G T A A C G T T G A C G T A C A C G T C G A T G A T C C G A T
p-value:1e-5
log p-value:-1.238e+01
Information Content per bp:1.717
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif304.9
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets91.2 +/- 45.3bp
Average Position of motif in Background105.3 +/- 67.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AGAAGGATGAAT--
NNTNTCATGAATGT
C G T A C T A G C G T A G T C A C A T G A C T G C G T A C G A T A C T G G T C A G T C A A C G T A C G T A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.66
Offset:6
Orientation:forward strand
Alignment:AGAAGGATGAAT----
------ATGAATATTC
C G T A C T A G C G T A G T C A C A T G A C T G C G T A C G A T A C T G G T C A G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AGAAGGATGAAT
TGAATTATGCAT
C G T A C T A G C G T A G T C A C A T G A C T G C G T A C G A T A C T G G T C A G T C A A C G T
C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.66
Offset:6
Orientation:forward strand
Alignment:AGAAGGATGAAT----
------ATGMATATDC
C G T A C T A G C G T A G T C A C A T G A C T G C G T A C G A T A C T G G T C A G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

PB0170.1_Sox17_2/Jaspar

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AGAAGGATGAAT------
-NTTNTATGAATGTGNNC
C G T A C T A G C G T A G T C A C A T G A C T G C G T A C G A T A C T G G T C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:6
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:AGAAGGATGAAT---
---ATGATKGATGRC
C G T A C T A G C G T A G T C A C A T G A C T G C G T A C G A T A C T G G T C A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

PH0138.1_Pitx2/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGAAGGATGAAT----
TGAAGGGATTAATCATC
A C G T C G T A C T A G C G T A G T C A C A T G A C T G C G T A C G A T A C T G G T C A G T C A A C G T A C G T A C G T A C G T A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

PH0148.1_Pou3f3/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AGAAGGATGAAT------
-AAAATATGCATAATAAA
C G T A C T A G C G T A G T C A C A T G A C T G C G T A C G A T A C T G G T C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:9
Score:0.61
Offset:4
Orientation:forward strand
Alignment:AGAAGGATGAAT--
----TGATKGATGR
C G T A C T A G C G T A G T C A C A T G A C T G C G T A C G A T A C T G G T C A G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G

PH0130.1_Otx2/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGAAGGATGAAT----
TGTAGGGATTAATTGTC
A C G T C G T A C T A G C G T A G T C A C A T G A C T G C G T A C G A T A C T G G T C A G T C A A C G T A C G T A C G T A C G T A C G T
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C