Information for 5-CACGTTCATA (Motif 12)

A G T C C G T A A G T C A C T G A C G T A C G T A G T C C G T A A C G T C G T A
Reverse Opposite:
A C G T C G T A A C G T A C T G C G T A C G T A A G T C A C T G A C G T A C T G
p-value:1e-3
log p-value:-8.207e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif7.14%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets14.0 +/- 0.0bp
Average Position of motif in Background96.1 +/- 52.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0170.1_Sox17_2/Jaspar

Match Rank:1
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CACGTTCATA----
GACCACATTCATACAAT
A C G T A C G T A C G T A G T C C G T A A G T C A C T G A C G T A C G T A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CACGTTCATA
GCACGTNC---
A C G T A G T C C G T A A G T C A C T G A C G T A C G T A G T C C G T A A C G T C G T A
A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C A C G T A C G T A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CACGTTCATA
GCACGTACCC-
A C G T A G T C C G T A A G T C A C T G A C G T A C G T A G T C C G T A A C G T C G T A
C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:4
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CACGTTCATA
GCACGTAY---
A C G T A G T C C G T A A G T C A C T G A C G T A C G T A G T C C G T A A C G T C G T A
C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T A C G T

Arnt/MA0004.1/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CACGTTCATA
CACGTG----
A G T C C G T A A G T C A C T G A C G T A C G T A G T C C G T A A C G T C G T A
A G T C C G T A A G T C A C T G A G C T A C T G A C G T A C G T A C G T A C G T

HIF1A/MA1106.1/Jaspar

Match Rank:6
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CACGTTCATA
NNGCACGTNC---
A C G T A C G T A C G T A G T C C G T A A G T C A C T G A C G T A C G T A G T C C G T A A C G T C G T A
T A C G T A C G C A T G A G T C T C G A A G T C C T A G G A C T T C G A A T G C A C G T A C G T A C G T

SOHLH2/MA1560.1/Jaspar

Match Rank:7
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CACGTTCATA
NGCACGTGCG--
A C G T A C G T A G T C C G T A A G T C A C T G A C G T A C G T A G T C C G T A A C G T C G T A
A G C T A C T G A G T C C T G A G T A C T A C G A G C T C T A G T G A C C T A G A C G T A C G T

NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CACGTTCATA
CACGTGBN--
A G T C C G T A A G T C A C T G A C G T A C G T A G T C C G T A A C G T C G T A
G T A C C T G A A G T C C T A G G C A T C A T G A C G T G C T A A C G T A C G T

bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CACGTTCATA
NGKCACGTGM---
A C G T A C G T A C G T A G T C C G T A A G T C A C T G A C G T A C G T A G T C C G T A A C G T C G T A
T C G A T C A G C A T G A G T C C G T A A G T C C T A G A C G T A C T G G T A C A C G T A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:10
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CACGTTCATA-----
-ACATTCATGACACG
A G T C C G T A A G T C A C T G A C G T A C G T A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G