Information for 20-GAACTAAGGG (Motif 35)

A C T G C G T A C G T A A G T C A C G T C G T A C G T A A C T G A C T G A C T G
Reverse Opposite:
A G T C A G T C A G T C A C G T A C G T C G T A A C T G A C G T A C G T A G T C
p-value:1e-2
log p-value:-6.848e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif72.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets50.0 +/- 0.0bp
Average Position of motif in Background113.7 +/- 173.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GAACTAAGGG
GGAACAAAGR-
A C G T A C T G C G T A C G T A A G T C A C G T C G T A C G T A A C T G A C T G A C T G
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T

SOX4/MA0867.2/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GAACTAAGGG
GAACAAAGGG
A C T G C G T A C G T A A G T C A C G T C G T A C G T A A C T G A C T G A C T G
C T A G T C G A C G T A A T G C T C G A T C G A G C T A C T A G T C A G T C A G

PB0071.1_Sox4_1/Jaspar

Match Rank:3
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----GAACTAAGGG---
AGAAGAACAAAGGACTA
A C G T A C G T A C G T A C G T A C T G C G T A C G T A A G T C A C G T C G T A C G T A A C T G A C T G A C T G A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GAACTAAGGG
GAACAATGGN
A C T G C G T A C G T A A G T C A C G T C G T A C G T A A C T G A C T G A C T G
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

PB0061.1_Sox11_1/Jaspar

Match Rank:5
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GAACTAAGGG---
ATAAGAACAAAGGACTA
A C G T A C G T A C G T A C G T A C T G C G T A C G T A A G T C A C G T C G T A C G T A A C T G A C T G A C T G A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GAACTAAGGG
AAAACAAAGG-
A C G T A C T G C G T A C G T A A G T C A C G T C G T A C G T A A C T G A C T G A C T G
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:7
Score:0.67
Offset:3
Orientation:forward strand
Alignment:GAACTAAGGG-
---CTAATKGV
A C T G C G T A C G T A A G T C A C G T C G T A C G T A A C T G A C T G A C T G A C G T
A C G T A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C

SOX10/MA0442.2/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GAACTAAGGG
AAAACAAAGAA
A C G T A C T G C G T A C G T A A G T C A C G T C G T A C G T A A C T G A C T G A C T G
C T G A C T G A T G C A G C T A A G T C C G T A G C T A G C T A A C T G T C G A T G C A

Isl1/MA1608.1/Jaspar

Match Rank:9
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GAACTAAGGG--
-NNCTAATGGNN
A C T G C G T A C G T A A G T C A C G T C G T A C G T A A C T G A C T G A C T G A C G T A C G T
A C G T A C G T T C A G G A T C C G A T C T G A C G T A G A C T C A T G C T A G T G C A G A C T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GAACTAAGGG
VRRACAAWGG-
A C G T A C T G C G T A C G T A A G T C A C G T C G T A C G T A A C T G A C T G A C T G
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T