Information for 1-CAGACTCT (Motif 5)

A T G C C G T A C A T G G T C A T G A C G A C T A G T C C G A T
Reverse Opposite:
C G T A A C T G C T G A A C T G A C G T G T A C A C G T A T C G
p-value:1e-5
log p-value:-1.161e+01
Information Content per bp:1.812
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif4441.0
Percentage of Background Sequences with motif7.71%
Average Position of motif in Targets81.9 +/- 43.5bp
Average Position of motif in Background99.6 +/- 68.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTCT
BCAGACWA-
A C G T A T G C C G T A C A T G G T C A T G A C G A C T A G T C C G A T
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTCT-
CCAGACRSVB
A C G T A T G C C G T A C A T G G T C A T G A C G A C T A G T C C G A T A C G T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTCT
CCAGACAG-
A C G T A T G C C G T A C A T G G T C A T G A C G A C T A G T C C G A T
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

PB0203.1_Zfp691_2/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CAGACTCT------
TACGAGACTCCTCTAAC
A C G T A C G T A C G T A T G C C G T A C A T G G T C A T G A C G A C T A G T C C G A T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T C T G A A T G C A C T G C G T A C A T G C T G A A T G C A C G T A G T C T G A C A G C T G A T C C G A T T G C A G T C A T A G C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CAGACTCT
ATGCCAGACN--
A C G T A C G T A C G T A C G T A T G C C G T A C A T G G T C A T G A C G A C T A G T C C G A T
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------CAGACTCT---
CAAATCCAGACATCACA
A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G T A C A T G G T C A T G A C G A C T A G T C C G A T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

POL002.1_INR/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CAGACTCT
TCAGTCTT-
A C G T A T G C C G T A C A T G G T C A T G A C G A C T A G T C C G A T
C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:8
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CAGACTCT--
AGCAACAGCCGCACC
A C G T A C G T A C G T A C G T A C G T A T G C C G T A C A T G G T C A T G A C G A C T A G T C C G A T A C G T A C G T
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C

ZSCAN4/MA1155.1/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CAGACTCT-----
TGCACACACTGAAAA
A C G T A C G T A T G C C G T A C A T G G T C A T G A C G A C T A G T C C G A T A C G T A C G T A C G T A C G T A C G T
G A C T T C A G A T G C C G T A A G T C C G T A G A T C T G C A G T A C A C G T A C T G C G T A G T C A C T G A C T G A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------CAGACTCT
AGGTGHCAGACA--
A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G T A C A T G G T C A T G A C G A C T A G T C C G A T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T