Information for 17-CCTGTATGGC (Motif 32)

A G T C A G T C A C G T A C T G A C G T C G T A A C G T A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C C G T A A C G T C G T A A G T C C G T A A C T G A C T G
p-value:1e-2
log p-value:-6.875e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif20.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets171.0 +/- 0.0bp
Average Position of motif in Background122.0 +/- 76.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CCTGTATGGC
-CTGTCTGG-
A G T C A G T C A C G T A C T G A C G T C G T A A C G T A C T G A C T G A G T C
A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCTGTATGGC----
NNTNNTGTCTGGNNTNG
A C G T A C G T A C G T A G T C A G T C A C G T A C T G A C G T C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

CDX1/MA0878.2/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CCTGTATGGC-
GTTTTATGGCC
A G T C A G T C A C G T A C T G A C G T C G T A A C G T A C T G A C T G A G T C A C G T
T C A G C A G T A G C T A C G T A G C T C G T A A C G T A C T G T C A G G A T C G T A C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCTGTATGGC
VBSYGTCTGG-
A C G T A G T C A G T C A C G T A C T G A C G T C G T A A C G T A C T G A C T G A G T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T

CDX4/MA1473.1/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCTGTATGGC-
GTTTTATTGCC
A G T C A G T C A C G T A C T G A C G T C G T A A C G T A C T G A C T G A G T C A C G T
T C A G C A G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G T C G T A C

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCTGTATGGC-
CCATATATGGNA
A C G T A G T C A G T C A C G T A C T G A C G T C G T A A C G T A C T G A C T G A G T C A C G T
A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCTGTATGGC
GCTGTG----
A G T C A G T C A C G T A C T G A C G T C G T A A C G T A C T G A C T G A G T C
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T

Smad4/MA1153.1/Jaspar

Match Rank:8
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CCTGTATGGC
--TGTCTAGA
A G T C A G T C A C G T A C T G A C G T C G T A A C G T A C T G A C T G A G T C
A C G T A C G T G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A

SRF/MA0083.3/Jaspar

Match Rank:9
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CCTGTATGGC--
TGNCCATATATGGTCA
A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C T G A C G T C G T A A C G T A C T G A C T G A G T C A C G T A C G T
G C A T A C T G G T C A G A T C A T G C C G T A C G A T T G C A A G C T G C T A G C A T T C A G A T C G C A G T T G A C C G T A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CCTGTATGGC----
-CTGTCTGTCACCT
A G T C A G T C A C G T A C T G A C G T C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T