Information for 16-CTGCCCCAAATT (Motif 17)

A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A C G T A C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A A C G T A C G T A C G T A C T G A C T G A C T G A C T G A G T C C G T A A C T G
p-value:1e-5
log p-value:-1.155e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets77.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0202.1_Zfp410_2/Jaspar

Match Rank:1
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----CTGCCCCAAATT
TCACCCCGCCCCAAATT
A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A C G T A C G T A A C G T A C G T
A G C T G A T C G T C A A G T C G A T C A G T C A G T C A C T G T G A C A G T C T G A C A T G C C G A T G C T A G T C A G A C T G C A T

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:2
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CTGCCCCAAATT
NNHYTGACCTAGWTT
A C G T A C G T A C G T A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A C G T A C G T A A C G T A C G T
A C G T G A T C G A C T G A T C A C G T A C T G T C G A A G T C A G T C A G C T C T G A T C A G C G A T C G A T G C A T

RORC/MA1151.1/Jaspar

Match Rank:3
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CTGCCCCAAATT-
-TGACCTANTTAN
A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A C G T A C G T A A C G T A C G T A C G T
A C G T G A C T T C A G T G C A G A T C G T A C A G C T T G C A T A G C G C A T C G A T G C T A G A C T

PB0110.1_Bcl6b_2/Jaspar

Match Rank:4
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CTGCCCCAAATT
ATCCCCGCCCCTAAAA
A C G T A C G T A C G T A C G T A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A C G T A C G T A A C G T A C G T
G T C A A C G T A T G C A T G C A G T C G A T C C T A G G A T C T G A C A T G C A G T C C G A T G C T A G T C A G C T A T G C A

THAP1/MA0597.1/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CTGCCCCAAATT
CTGCCCGCA---
A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A C G T A C G T A A C G T A C G T
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTGCCCCAAATT
BTGACCTAVTTW
A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A C G T A C G T A A C G T A C G T
A G T C A C G T T C A G T C G A A G T C A G T C A G C T C T G A T C A G C G A T G C A T G C A T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTGCCCCAAATT
-TGACCTARTT-
A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A C G T A C G T A A C G T A C G T
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:8
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTGCCCCAAATT
-TGACCTARTT-
A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A C G T A C G T A A C G T A C G T
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T

RORB/MA1150.1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTGCCCCAAATT
NTGACCTAATT-
A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A C G T A C G T A A C G T A C G T
C T A G G A C T C T A G T C G A G A T C T G A C G A C T T G C A G C T A C G A T G C A T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CTGCCCCAAATT--
TTGACCTANTTATN
A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A