Information for 4-ACATTGGGCG (Motif 13)

C G T A A G T C C G T A A C G T A C G T A C T G A C T G A C T G A G T C A C T G
Reverse Opposite:
A G T C A C T G A G T C A G T C G T A C C G T A C G T A A C G T A C T G A C G T
p-value:1e-10
log p-value:-2.498e+01
Information Content per bp:1.962
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets87.6 +/- 42.7bp
Average Position of motif in Background70.4 +/- 3.6bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFYB/MA0502.2/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-ACATTGGGCG-
CTCATTGGCCAG
A C G T C G T A A G T C C G T A A C G T A C G T A C T G A C T G A C T G A G T C A C T G A C G T
A T G C A G C T A T G C G C T A A G C T C A G T C A T G C T A G A G T C G A T C T G C A T C A G

MSGN1/MA1524.1/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--ACATTGGGCG
NNACATATGGCN
A C G T A C G T C G T A A G T C C G T A A C G T A C G T A C T G A C T G A C T G A G T C A C T G
A T C G T C A G T G C A A T G C T C G A G C A T C G T A A G C T A T C G T A C G A G T C T A C G

PB0143.1_Klf7_2/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:ACATTGGGCG-------
NNNTNGGGCGTATNNTN
C G T A A G T C C G T A A C G T A C G T A C T G A C T G A C T G A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T C A C G T A A C T G G C A T C A G T C T A G A C T G A C T G G A T C C T A G A C G T G C T A G C A T T C A G G A T C A G C T A C G T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---ACATTGGGCG-
NTGCCCTTGGGCGN
A C G T A C G T A C G T C G T A A G T C C G T A A C G T A C G T A C T G A C T G A C T G A G T C A C T G A C G T
G A T C G C A T T C A G G T A C G A T C G A T C C G A T G A C T C T A G C T A G C A T G A G T C C T A G T A C G

PB0132.1_Hbp1_2/Jaspar

Match Rank:5
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----ACATTGGGCG--
NNTNNACAATGGGANNN
A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A A C G T A C G T A C T G A C T G A C T G A G T C A C T G A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

SOX13/MA1120.1/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--ACATTGGGCG
AAACAATGGCA-
A C G T A C G T C G T A A G T C C G T A A C G T A C G T A C T G A C T G A C T G A G T C A C T G
C T G A T C G A C T G A A G T C G C T A C T G A G C A T C T A G T C A G T G A C G C T A A C G T

SOX2/MA0143.4/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--ACATTGGGCG
AAACAATGGAA-
A C G T A C G T C G T A A G T C C G T A A C G T A C G T A C T G A C T G A C T G A G T C A C T G
C G T A C G T A G C T A G A T C G C T A T C G A C G A T C T A G C T A G C G T A G C T A A C G T

SOX14/MA1562.1/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:ACATTGGGCG-
-CATTGTTCGG
C G T A A G T C C G T A A C G T A C G T A C T G A C T G A C T G A G T C A C T G A C G T
A C G T G T A C T G C A C A G T A C G T T C A G C G A T G C A T G T A C C T A G A C T G

Twist2/MA0633.1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-ACATTGGGCG
NACATATGGN-
A C G T C G T A A G T C C G T A A C G T A C G T A C T G A C T G A C T G A G T C A C T G
G T C A G T C A A G T C C G T A A G C T C T G A A C G T A C T G A C T G A G C T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--ACATTGGGCG
GAACAATGGN--
A C G T A C G T C G T A A G T C C G T A A C G T A C G T A C T G A C T G A C T G A G T C A C T G
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T