Information for 3-GCGGTCAA (Motif 22)

A C T G A G T C A C T G A C T G A C G T A G T C C G T A C G T A
Reverse Opposite:
A C G T G A C T A C T G C G T A A G T C A G T C C T A G A G T C
p-value:1e-7
log p-value:-1.689e+01
Information Content per bp:1.929
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif2.83%
Number of Background Sequences with motif413.9
Percentage of Background Sequences with motif0.86%
Average Position of motif in Targets118.0 +/- 52.6bp
Average Position of motif in Background104.0 +/- 58.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.36
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0030.1_Hnf4a_1/Jaspar

Match Rank:1
Score:0.81
Offset:-5
Orientation:forward strand
Alignment:-----GCGGTCAA----
CTCCAGGGGTCAATTGA
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C T G A C T G A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

PB0118.1_Esrra_2/Jaspar

Match Rank:2
Score:0.78
Offset:-5
Orientation:forward strand
Alignment:-----GCGGTCAA----
GGCGAGGGGTCAAGGGC
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C T G A C T G A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

PB0057.1_Rxra_1/Jaspar

Match Rank:3
Score:0.77
Offset:-5
Orientation:reverse strand
Alignment:-----GCGGTCAA----
NTNNNGGGGTCANGNNN
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C T G A C T G A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-GCGGTCAA
AGRGGTCA-
A C G T A C T G A G T C A C T G A C T G A C G T A G T C C G T A C G T A
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T

NR2C1/MA1535.1/Jaspar

Match Rank:5
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GCGGTCAA
CGAGGTCAC
A C G T A C T G A G T C A C T G A C T G A C G T A G T C C G T A C G T A
G T A C C T A G T C G A A C T G A C T G A C G T A T G C C T G A G A T C

EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer

Match Rank:6
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----GCGGTCAA
NRBCARRGGTCA-
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C T G A C T G A C G T A G T C C G T A C G T A
T C A G T C A G A C G T G T A C G C T A T C A G C T G A A C T G A C T G A G C T A G T C C G T A A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:7
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GCGGTCAA
GCTGTCAA
A C T G A G T C A C T G A C T G A C G T A G T C C G T A C G T A
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

NR2C2(var.2)/MA1536.1/Jaspar

Match Rank:8
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GCGGTCAA
GAGGTCAT
A C T G A G T C A C T G A C T G A C G T A G T C C G T A C G T A
T C A G T C G A A C T G A C T G A C G T A G T C C T G A G C A T

PH0170.1_Tgif2/Jaspar

Match Rank:9
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----GCGGTCAA---
AACTAGCTGTCAATAC
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C T G A C T G A C G T A G T C C G T A C G T A A C G T A C G T A C G T
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C

NR2F1/MA0017.2/Jaspar

Match Rank:10
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GCGGTCAA---
CAAAGGTCAAGGG
A C G T A C G T A C T G A G T C A C T G A C T G A C G T A G T C C G T A C G T A A C G T A C G T A C G T
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G