Information for 7-CTCTCCTCTTAA (Motif 9)

A G T C A C G T A G T C A C G T A G T C A G T C A C G T A G T C A C G T A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A C G T A A C T G C G T A A C T G A C T G C G T A A C T G C G T A A C T G
p-value:1e-4
log p-value:-9.735e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets114.0 +/- 0.0bp
Average Position of motif in Background127.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0004.1_Nkx3-2/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CTCTCCTCTTAA----
CATAACCACTTAACAAC
A C G T A G T C A C G T A G T C A C G T A G T C A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTCTCCTCTTAA----
CTTAACCACTTAAGGAT
A C G T A G T C A C G T A G T C A C G T A G T C A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:3
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CTCTCCTCTTAA-
---NSCACTYVAV
A G T C A C G T A G T C A C G T A G T C A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C G T
A C G T A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

Nkx3-1/MA0124.2/Jaspar

Match Rank:4
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CTCTCCTCTTAA
---ACCACTTAA
A G T C A C G T A G T C A C G T A G T C A G T C A C G T A G T C A C G T A C G T C G T A C G T A
A C G T A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A

Nkx3-2/MA0122.3/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTCTCCTCTTAA-
ATAACCACTTAAA
A G T C A C G T A G T C A C G T A G T C A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C G T
C G T A C G A T C G T A C G T A T G A C G A T C G C T A G T A C G C A T G A C T G C T A C G T A G C T A

PH0048.1_Hoxa13/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CTCTCCTCTTAA-----
-AAACCTCGTAAAATTT
A G T C A C G T A G T C A C G T A G T C A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

NKX2-3/MA0672.1/Jaspar

Match Rank:7
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CTCTCCTCTTAA-
---ACCACTTGAA
A G T C A C G T A G T C A C G T A G T C A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C G T
A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

ZKSCAN5/MA1652.1/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CTCTCCTCTTAA
NNCTCACCTCCTNN
A C G T A C G T A G T C A C G T A G T C A C G T A G T C A G T C A C G T A G T C A C G T A C G T C G T A C G T A
A G C T A G C T G T A C A G C T A G T C T C G A G A T C A G T C A C G T A G T C G A T C G A C T A G T C G A T C

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:9
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CTCTCCTCTTAA-
---RSCACTYRAG
A G T C A C G T A G T C A C G T A G T C A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C G T
A C G T A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

PH0068.1_Hoxc13/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CTCTCCTCTTAA-----
-AAAGCTCGTAAAATTT
A G T C A C G T A G T C A C G T A G T C A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T