Information for 20-GTWTATTGTGAG (Motif 18)

A C T G A C G T C G A T A C G T C G T A A G C T C G A T A C T G A C G T A T C G C G T A A C T G
Reverse Opposite:
A G T C C G A T A T G C C G T A A G T C C G T A C T G A A C G T T C G A G C T A C G T A A G T C
p-value:1e-9
log p-value:-2.076e+01
Information Content per bp:1.821
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif2.32%
Number of Background Sequences with motif17.2
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets111.8 +/- 43.6bp
Average Position of motif in Background74.9 +/- 61.1bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17/MA0078.1/Jaspar

Match Rank:1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GTWTATTGTGAG
-CTCATTGTC--
A C T G A C G T C G A T A C G T C G T A A G C T C G A T A C T G A C G T A T C G C G T A A C T G
A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GTWTATTGTGAG--
NNNCCATTGTGTNAN
A C G T A C T G A C G T C G A T A C G T C G T A A G C T C G A T A C T G A C G T A T C G C G T A A C T G A C G T A C G T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GTWTATTGTGAG-
-BCCWTTGTBYKV
A C T G A C G T C G A T A C G T C G T A A G C T C G A T A C T G A C G T A T C G C G T A A C T G A C G T
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A T G C G A C T A C T G T A C G

FOXH1/MA0479.1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GTWTATTGTGAG
TGTGGATTNNN--
A C G T A C T G A C G T C G A T A C G T C G T A A G C T C G A T A C T G A C G T A T C G C G T A A C T G
C G A T A C T G A C G T A C T G C A T G C G T A G C A T A C G T A T C G T C A G T C G A A C G T A C G T

ZNF143/MA0088.2/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GTWTATTGTGAG--
CAATGCATTGTGGGTA
A C G T A C G T A C T G A C G T C G A T A C G T C G T A A G C T C G A T A C T G A C G T A T C G C G T A A C T G A C G T A C G T
G A T C C T G A C T G A C A G T A C T G A G T C G C T A G A C T A G C T T C A G G A C T A C T G A C T G A C T G G C A T T C G A

HOXD13/MA0909.2/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GTWTATTGTGAG
GTTTTATTGGG--
A C G T A C T G A C G T C G A T A C G T C G T A A G C T C G A T A C T G A C G T A T C G C G T A A C T G
A C T G A C G T A C G T A G C T A C G T C G T A A G C T A C G T A C T G A T C G A T C G A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GTWTATTGTGAG-----
-NNNNTTGTGTGCTTNN
A C T G A C G T C G A T A C G T C G T A A G C T C G A T A C T G A C G T A T C G C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

Sox5/MA0087.1/Jaspar

Match Rank:8
Score:0.61
Offset:4
Orientation:forward strand
Alignment:GTWTATTGTGAG
----ATTGTTA-
A C T G A C G T C G A T A C G T C G T A A G C T C G A T A C T G A C G T A T C G C G T A A C T G
A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T A C G T

PB0183.1_Sry_2/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GTWTATTGTGAG----
CNNNTATTGTTCNNNNN
A C G T A C T G A C G T C G A T A C G T C G T A A G C T C G A T A C T G A C G T A T C G C G T A A C T G A C G T A C G T A C G T A C G T
A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A

SOX13/MA1120.1/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GTWTATTGTGAG
NNCCATTGTNN-
A C T G A C G T C G A T A C G T C G T A A G C T C G A T A C T G A C G T A T C G C G T A A C T G
C G A T A C T G A G T C G A T C C G T A G A C T C G A T T C A G G A C T A G C T G A C T A C G T