| p-value: | 1e-2 |
| log p-value: | -5.312e+00 |
| Information Content per bp: | 1.530 |
| Number of Target Sequences with motif | 1.0 |
| Percentage of Target Sequences with motif | 6.67% |
| Number of Background Sequences with motif | 26.0 |
| Percentage of Background Sequences with motif | 0.03% |
| Average Position of motif in Targets | 197.0 +/- 0.0bp |
| Average Position of motif in Background | 106.5 +/- 72.3bp |
| Strand Bias (log2 ratio + to - strand density) | 10.0 |
| Multiplicity (# of sites on avg that occur together) | 1.00 |
| Motif File: | file (matrix) reverse opposite |
| SVG Files for Logos: | forward logo reverse opposite |
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer
| Match Rank: | 1 |
| Score: | 0.62 |
| Offset: | -2 |
| Orientation: | forward strand |
| Alignment: | --CGAGTAAC-- SCCTAGCAACAG |
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PKNOX1/MA0782.2/Jaspar
| Match Rank: | 2 |
| Score: | 0.61 |
| Offset: | -2 |
| Orientation: | forward strand |
| Alignment: | --CGAGTAAC----- TTTGAGTGACAGCTA |
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|
VENTX/MA0724.1/Jaspar
| Match Rank: | 3 |
| Score: | 0.59 |
| Offset: | -2 |
| Orientation: | forward strand |
| Alignment: | --CGAGTAAC ACCGATTAG- |
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|
|
PB0159.1_Rfx4_2/Jaspar
| Match Rank: | 4 |
| Score: | 0.59 |
| Offset: | 0 |
| Orientation: | reverse strand |
| Alignment: | CGAGTAAC------- NNNGTAACTANGNNA |
|
|
|
OVOL2/MA1545.1/Jaspar
| Match Rank: | 5 |
| Score: | 0.59 |
| Offset: | 0 |
| Orientation: | reverse strand |
| Alignment: | CGAGTAAC----- NNNNTAACGGTNN |
|
|
|
PBX3/MA1114.1/Jaspar
| Match Rank: | 6 |
| Score: | 0.58 |
| Offset: | -3 |
| Orientation: | forward strand |
| Alignment: | ---CGAGTAAC------ GGGTGAGTGACAGGCGG |
|
|
|
RFX7/MA1554.1/Jaspar
| Match Rank: | 7 |
| Score: | 0.58 |
| Offset: | 0 |
| Orientation: | reverse strand |
| Alignment: | CGAGTAAC- NTAGCAACG |
|
|
|
PB0108.1_Atf1_2/Jaspar
| Match Rank: | 8 |
| Score: | 0.57 |
| Offset: | -6 |
| Orientation: | forward strand |
| Alignment: | ------CGAGTAAC GAATGACGAATAAC |
|
|
|
PH0123.1_Obox3/Jaspar
| Match Rank: | 9 |
| Score: | 0.56 |
| Offset: | -6 |
| Orientation: | forward strand |
| Alignment: | ------CGAGTAAC--- TGAGGGGGATTAACTAT |
|
|
|
OVOL1/MA1544.1/Jaspar
| Match Rank: | 10 |
| Score: | 0.56 |
| Offset: | 0 |
| Orientation: | reverse strand |
| Alignment: | CGAGTAAC------ NANATAACGGTTTT |
|
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