Information for 14-RAGAGACATTAA (Motif 25)

T C G A C T G A A C T G C G T A C T A G G C T A G A T C C G T A C G A T A C G T G C T A G C T A
Reverse Opposite:
C G A T C G A T T G C A G C T A G C A T C T A G C G A T G A T C G C A T T G A C G A C T A G C T
p-value:1e-8
log p-value:-1.906e+01
Information Content per bp:1.538
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif7.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets100.3 +/- 52.2bp
Average Position of motif in Background101.1 +/- 49.4bp
Strand Bias (log2 ratio + to - strand density)3.2
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0073.1_Hoxc9/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:RAGAGACATTAA----
GGAGGTCATTAATTAT
T C G A C T G A A C T G C G T A C T A G G C T A G A T C C G T A C G A T A C G T G C T A G C T A A C G T A C G T A C G T A C G T
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

NKX6-3/MA1530.1/Jaspar

Match Rank:2
Score:0.60
Offset:4
Orientation:forward strand
Alignment:RAGAGACATTAA-
----CTCATTAAA
T C G A C T G A A C T G C G T A C T A G G C T A G A T C C G T A C G A T A C G T G C T A G C T A A C G T
A C G T A C G T A C G T A C G T T A G C A G C T A G T C C G T A A C G T A G C T C T G A G C T A G C T A

PB0135.1_Hoxa3_2/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:RAGAGACATTAA--
AAAAACCATTAAGG
T C G A C T G A A C T G C G T A C T A G G C T A G A T C C G T A C G A T A C G T G C T A G C T A A C G T A C G T
T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

Arid3b/MA0601.1/Jaspar

Match Rank:4
Score:0.59
Offset:5
Orientation:forward strand
Alignment:RAGAGACATTAA----
-----ATATTAATTAA
T C G A C T G A A C T G C G T A C T A G G C T A G A T C C G T A C G A T A C G T G C T A G C T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

Arid3a/MA0151.1/Jaspar

Match Rank:5
Score:0.59
Offset:7
Orientation:forward strand
Alignment:RAGAGACATTAA-
-------ATTAAA
T C G A C T G A A C T G C G T A C T A G G C T A G A T C C G T A C G A T A C G T G C T A G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A

NKX6-2/MA0675.1/Jaspar

Match Rank:6
Score:0.59
Offset:4
Orientation:forward strand
Alignment:RAGAGACATTAA
----CTAATTAA
T C G A C T G A A C T G C G T A C T A G G C T A G A T C C G T A C G A T A C G T G C T A G C T A
A C G T A C G T A C G T A C G T A T G C G A C T G T C A G C T A C G A T G C A T C T G A G C T A

HOXB3/MA0903.1/Jaspar

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:RAGAGACATTAA-
---ACTAATTAGC
T C G A C T G A A C T G C G T A C T A G G C T A G A T C C G T A C G A T A C G T G C T A G C T A A C G T
A C G T A C G T A C G T C T G A T A G C G A C T T G C A T C G A A G C T G A C T G C T A T C A G T G A C

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--RAGAGACATTAA
GAAAGTGAAAGT--
A C G T A C G T T C G A C T G A A C T G C G T A C T A G G C T A G A T C C G T A C G A T A C G T G C T A G C T A
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T

NKX6-1/MA0674.1/Jaspar

Match Rank:9
Score:0.58
Offset:4
Orientation:forward strand
Alignment:RAGAGACATTAA
----GTAATTAA
T C G A C T G A A C T G C G T A C T A G G C T A G A T C C G T A C G A T A C G T G C T A G C T A
A C G T A C G T A C G T A C G T T A C G A G C T G T C A G T C A A C G T G C A T T C G A G C T A

PRDM1/MA0508.3/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:RAGAGACATTAA
NAGAGAAAGNA-
T C G A C T G A A C T G C G T A C T A G G C T A G A T C C G T A C G A T A C G T G C T A G C T A
C T G A C T G A C A T G G C T A C A T G G C T A C G T A G C T A C A T G C G T A C T G A A C G T