Information for 4-CAATTAGTCG (Motif 11)

A G T C C G T A C G T A A C G T A C G T C G T A A C T G A C G T A G T C A C T G
Reverse Opposite:
A G T C A C T G C G T A A G T C A C G T C G T A C G T A A C G T A C G T A C T G
p-value:1e-3
log p-value:-8.231e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.88%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.0 +/- 0.0bp
Average Position of motif in Background70.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Msx3/MA0709.1/Jaspar

Match Rank:1
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-CAATTAGTCG
CCAATTAA---
A C G T A G T C C G T A C G T A A C G T A C G T C G T A A C T G A C G T A G T C A C T G
T A G C G A T C T C G A T G C A A C G T G A C T C G T A T C G A A C G T A C G T A C G T

LHX2/MA0700.2/Jaspar

Match Rank:2
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---CAATTAGTCG
AACCAATTAAT--
A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C G T C G T A A C T G A C G T A G T C A C T G
C G T A C G T A A T G C G A T C G C T A G C T A C G A T C G A T G C T A C G T A G C A T A C G T A C G T

MSX1/MA0666.1/Jaspar

Match Rank:3
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-CAATTAGTCG
CCAATTAG---
A C G T A G T C C G T A C G T A A C G T A C G T C G T A A C T G A C G T A G T C A C T G
A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G A C G T A C G T A C G T

MSX2/MA0708.1/Jaspar

Match Rank:4
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-CAATTAGTCG
CCAATTAA---
A C G T A G T C C G T A C G T A A C G T A C G T C G T A A C T G A C G T A G T C A C T G
T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A A C G T A C G T A C G T

TLX2/MA1577.1/Jaspar

Match Rank:5
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-CAATTAGTCG
CTAATTAG---
A C G T A G T C C G T A C G T A A C G T A C G T C G T A A C T G A C G T A G T C A C T G
A G T C G A C T C T G A C G T A A C G T A C G T C G T A T C A G A C G T A C G T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:6
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-CAATTAGTCG
BCMATTAG---
A C G T A G T C C G T A C G T A A C G T A C G T C G T A A C T G A C G T A G T C A C T G
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T

GBX2/MA0890.1/Jaspar

Match Rank:7
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--CAATTAGTCG
ACCAATTAGC--
A C G T A C G T A G T C C G T A C G T A A C G T A C G T C G T A A C T G A C G T A G T C A C T G
T C G A A T G C G A T C T C G A T G C A A C G T A C G T G C T A T C A G A T G C A C G T A C G T

PH0089.1_Isx/Jaspar

Match Rank:8
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----CAATTAGTCG-
ACTCCTAATTAGTCGT
A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C G T C G T A A C T G A C G T A G T C A C T G A C G T
G C T A T G A C A G C T T G A C G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C G T A G T C T A C G C G A T

BARX1/MA0875.1/Jaspar

Match Rank:9
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CAATTAGTCG
GCAATTAG---
A C G T A G T C C G T A C G T A A C G T A C G T C G T A A C T G A C G T A G T C A C T G
T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G A C G T A C G T A C G T

EN1/MA0027.2/Jaspar

Match Rank:10
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CAATTAGTCG
CTAATTAG---
A C G T A G T C C G T A C G T A A C G T A C G T C G T A A C T G A C G T A G T C A C T G
A T G C G A C T T G C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T