Information for 2-TCGGAGAT (Motif 25)

A C G T G T A C A T C G A T C G C G T A A C T G C T G A A C G T
Reverse Opposite:
C G T A A G C T A G T C A C G T A T G C A T G C A C T G C G T A
p-value:1e-7
log p-value:-1.801e+01
Information Content per bp:1.854
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif5.01%
Number of Background Sequences with motif906.9
Percentage of Background Sequences with motif1.88%
Average Position of motif in Targets91.4 +/- 51.2bp
Average Position of motif in Background97.5 +/- 57.4bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0115.1_Ehf_2/Jaspar

Match Rank:1
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TCGGAGAT----
AAGATCGGAANTNNNA
A C G T A C G T A C G T A C G T A C G T G T A C A T C G A T C G C G T A A C T G C T G A A C G T A C G T A C G T A C G T A C G T
C G T A G C T A A T C G C G T A C G A T T G A C C A T G C T A G C G T A C G T A T G C A G A C T G T C A A G T C G C A T G C T A

PB0181.1_Spdef_2/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TCGGAGAT----
CTACTAGGATGTNNTN
A C G T A C G T A C G T A C G T A C G T G T A C A T C G A T C G C G T A A C T G C T G A A C G T A C G T A C G T A C G T A C G T
A G T C G C A T C G T A T G A C C G A T T C G A T A C G C A T G C G T A G A C T C T A G G A C T C G A T T C G A G C A T G A T C

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:3
Score:0.60
Offset:4
Orientation:forward strand
Alignment:TCGGAGAT----
----AGATAASR
A C G T G T A C A T C G A T C G C G T A A C T G C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A A T C G G C T A G A C T G C T A T C G A T A G C T C G A

POL013.1_MED-1/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TCGGAGAT
-CGGAGC-
A C G T G T A C A T C G A T C G C G T A A C T G C T G A A C G T
A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T

TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer

Match Rank:5
Score:0.58
Offset:4
Orientation:forward strand
Alignment:TCGGAGAT------
----AGATAAGANN
A C G T G T A C A T C G A T C G C G T A A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C G T C G T A C T G A T C A G T G C A A G C T T G A C

PB0138.1_Irf4_2/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TCGGAGAT----
GNNACCGAGAATNNN
A C G T A C G T A C G T A C G T G T A C A T C G A T C G C G T A A C T G C T G A A C G T A C G T A C G T A C G T A C G T
A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T

ZBTB7B/MA0694.1/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TCGGAGAT---
TTCGGTGGTCGC
A C G T A C G T G T A C A T C G A T C G C G T A A C T G C T G A A C G T A C G T A C G T A C G T
C A G T C G A T A G T C C T A G C A T G C A G T A T C G A C T G C A G T G A T C A T C G G A T C

HAND2/MA1638.1/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TCGGAGAT---
-ACCAGATGGC
A C G T G T A C A T C G A T C G C G T A A C T G C T G A A C G T A C G T A C G T A C G T
A C G T C T G A T G A C A T G C T C G A A C T G T C G A A G C T T C A G A C T G G A T C

ZNF135/MA1587.1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TCGGAGAT-----
TCAGGAGGTCGAGG
A C G T A C G T G T A C A T C G A T C G C G T A A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T
G A C T A G T C C T G A C T A G A T C G T C G A T C A G A T C G G A C T A G T C T C A G T C G A T C A G T C A G

PB0126.1_Gata5_2/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TCGGAGAT--------
GACAGAGATATCAGTGT
A C G T A C G T G T A C A T C G A T C G C G T A A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T