Information for 5-CGATTTATCC (Motif 10)

A G T C A C T G C G T A A C G T A C G T A C G T C G T A A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A A C G T C G T A C G T A C G T A A C G T A G T C A C T G
p-value:1e-3
log p-value:-8.900e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif9.09%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.0 +/- 0.0bp
Average Position of motif in Background110.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0163.1_Six6_2/Jaspar

Match Rank:1
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CGATTTATCC----
ATGGGATATATCCGCCT
A C G T A C G T A C G T A G T C A C T G C G T A A C G T A C G T A C G T C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T
T G C A C G A T A T C G T A C G A C T G T C G A G A C T C T G A A C G T G T C A A G C T G T A C A G T C T C A G G A T C G A T C C A G T

PH0130.1_Otx2/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CGATTTATCC-----
GANNATTAATCCCTNNN
A C G T A C G T A G T C A C T G C G T A A C G T A C G T A C G T C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T
C A T G G T C A G A T C C T G A T C G A G A C T C G A T C G T A C G T A C A G T G A T C A G T C A G T C A G C T G C T A G A T C G T C A

PH0138.1_Pitx2/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CGATTTATCC-----
GNNNATTAATCCCTNCN
A C G T A C G T A G T C A C T G C G T A A C G T A C G T A C G T C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T
C T A G G C T A G A C T C T A G C T G A G A C T C G A T C G T A C T G A A C G T G A T C A G T C A G T C A G C T G C A T G T A C G T C A

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:4
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CGATTTATCC--
NNANTGATTGATNNNN
A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C G T A C G T A C G T C G T A A C G T A G T C A G T C A C G T A C G T
G C A T C G A T T G C A T A C G G A C T C T A G G T C A G A C T C G A T T C A G C G T A C G A T A T G C A G C T G A C T A T G C

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:5
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CGATTTATCC--
AAATGATTTATGGCT
A C G T A C G T A C G T A G T C A C T G C G T A A C G T A C G T A C G T C G T A A C G T A G T C A G T C A C G T A C G T
C T G A C G T A C G T A C G A T C T A G C G T A C G A T C G A T C A G T T C G A A G C T C A T G C T A G A G T C G A C T

PBX2/MA1113.2/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CGATTTATCC-
NNTGATTTATGNN
A C G T A C G T A G T C A C T G C G T A A C G T A C G T A C G T C G T A A C G T A G T C A G T C A C G T
C G T A C T G A C G A T C T A G C G T A C G A T C G A T C A G T T C G A G A C T C A T G C T G A A G T C

PB0144.1_Lef1_2/Jaspar

Match Rank:7
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----CGATTTATCC--
NNANTGATTGATNTTN
A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C G T A C G T A C G T C G T A A C G T A G T C A G T C A C G T A C G T
G C A T C G T A T C G A C A T G G A C T C T A G G T C A G A C T C G A T T A C G C G T A C G A T A T G C A G C T G C A T A T G C

PH0129.1_Otx1/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CGATTTATCC-----
NNNAATTAATCCCCNCN
A C G T A C G T A G T C A C T G C G T A A C G T A C G T A C G T C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T
T C G A C G A T C G T A C G T A C T G A G A C T C G A T C G T A C G T A A C G T G A T C A G T C A T G C A G T C G C A T G T A C G A C T

RHOXF1/MA0719.1/Jaspar

Match Rank:9
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CGATTTATCC-
---ATAATCCC
A G T C A C T G C G T A A C G T A C G T A C G T C G T A A C G T A G T C A G T C A C G T
A C G T A C G T A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CGATTTATCC--
TGATTTATGGCC
A G T C A C T G C G T A A C G T A C G T A C G T C G T A A C G T A G T C A G T C A C G T A C G T
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C