Information for 15-TAAATAGGACAT (Motif 20)

A C G T C G T A C G T A C G T A A C G T C G T A A C T G A C T G C G T A A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G A C G T A G T C A G T C A C G T C G T A A C G T A C G T A C G T C G T A
p-value:1e-3
log p-value:-8.461e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif7.69%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets144.0 +/- 0.0bp
Average Position of motif in Background134.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORC/MA1151.1/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TAAATAGGACAT
ATAAGTAGGTCA-
A C G T A C G T C G T A C G T A C G T A A C G T C G T A A C T G A C T G C G T A A G T C C G T A A C G T
C T G A C G A T G C T A C G T A A C T G A C G T T C G A C A T G C T A G A C G T A G T C C T G A A C G T

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:2
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TAAATAGGACAT
WAABTAGGTCAV
A C G T C G T A C G T A C G T A A C G T C G T A A C T G A C T G C G T A A G T C C G T A A C G T
C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:3
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TAAATAGGACAT
-AAYTAGGTCA-
A C G T C G T A C G T A C G T A A C G T C G T A A C T G A C T G C G T A A G T C C G T A A C G T
A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TAAATAGGACAT
-AAYTAGGTCA-
A C G T C G T A C G T A C G T A A C G T C G T A A C T G A C T G C G T A A G T C C G T A A C G T
A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TAAATAGGACAT
TATAAGTAGGTCAA
A C G T A C G T A C G T C G T A C G T A C G T A A C G T C G T A A C T G A C T G C G T A A G T C C G T A A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

RORB/MA1150.1/Jaspar

Match Rank:6
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TAAATAGGACAT
-AATTAGGTCAC
A C G T C G T A C G T A C G T A A C G T C G T A A C T G A C T G C G T A A G T C C G T A A C G T
A C G T C G T A G C T A C G A T A C G T C T G A A C T G C T A G A G C T G A T C C T G A G A T C

PB0096.1_Zfp187_1/Jaspar

Match Rank:7
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TAAATAGGACAT--
TTATTAGTACATAN
A C G T C G T A C G T A C G T A A C G T C G T A A C T G A C T G C G T A A G T C C G T A A C G T A C G T A C G T
C A G T C G A T C G T A G A C T C G A T T C G A C T A G G A C T G C T A A G T C C T G A A G C T C T G A T C G A

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TAAATAGGACAT---
AAWCTAGGTCARDNN
A C G T C G T A C G T A C G T A A C G T C G T A A C T G A C T G C G T A A G T C C G T A A C G T A C G T A C G T A C G T
C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A

PH0081.1_Pdx1/Jaspar

Match Rank:9
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TAAATAGGACAT
AAGGTAATTAGCTCAT
A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G T A A C G T C G T A A C T G A C T G C G T A A G T C C G T A A C G T
T G C A T G C A C T A G A T C G G A C T T G C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T T A G C C G T A C A G T

PB0181.1_Spdef_2/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TAAATAGGACAT----
CTACTAGGATGTNNTN
A C G T C G T A C G T A C G T A A C G T C G T A A C T G A C T G C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A G T C G C A T C G T A T G A C C G A T T C G A T A C G C A T G C G T A G A C T C T A G G A C T C G A T T C G A G C A T G A T C