Information for 19-GGGTTTTATAAA (Motif 24)

A C T G A C T G A C T G A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C A G T C A G T C
p-value:1e-3
log p-value:-8.542e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets109.0 +/- 0.0bp
Average Position of motif in Background180.9 +/- 3.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0078.1_Hoxd13/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GGGTTTTATAAA---
NNANTTTTATTGGNNN
A C G T A C T G A C T G A C T G A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----GGGTTTTATAAA
NNNNNNCTTTTATAN-
A C G T A C G T A C G T A C G T A C T G A C T G A C T G A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T

TBP/MA0108.2/Jaspar

Match Rank:3
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----GGGTTTTATAAA
NNNNNNCTTTTATAN-
A C G T A C G T A C G T A C G T A C T G A C T G A C T G A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T

PB0187.1_Tcf7_2/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GGGTTTTATAAA---
CCGTATTATAAACAA
A C T G A C T G A C T G A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T
G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GGGTTTTATAAA
--NTTTTATDRG
A C T G A C T G A C T G A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A
A C G T A C G T C T A G G C A T A C G T G C A T G A C T C G T A G A C T C A T G C T A G A T C G

PB0001.1_Arid3a_1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GGGTTTTATAAA-----
GGGTTTAATTAAAATTC
A C T G A C T G A C T G A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T A C G A C T G A C T G G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A G T C A G A C T G C A T G A T C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:7
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GGGTTTTATAAA-
-DGWTTTATGRCN
A C T G A C T G A C T G A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T
A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

PB0080.1_Tbp_1/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGGTTTTATAAA----
NANTTATATATAANGN
A C T G A C T G A C T G A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A G C T G T C A C A G T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A C G T A C T A G C T G A

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GGGTTTTATAAA-
---TTTTATTRGN
A C T G A C T G A C T G A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T
A C G T A C G T A C G T C G A T A C G T A C G T G C A T C G T A G A C T C A G T C T A G A T C G G A T C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:10
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GGGTTTTATAAA
--NTTTTATGAC
A C T G A C T G A C T G A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A
A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C