Information for 3-AACCCTAAAA (Motif 8)

T G C A C G T A A T G C G A T C A T G C A G C T C T G A C T G A C G T A T G C A
Reverse Opposite:
A C G T A C G T A G C T G A C T C T G A T A C G C T A G A T C G G C A T A C G T
p-value:1e-10
log p-value:-2.339e+01
Information Content per bp:1.844
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif3.26%
Number of Background Sequences with motif264.4
Percentage of Background Sequences with motif0.55%
Average Position of motif in Targets88.1 +/- 51.7bp
Average Position of motif in Background99.2 +/- 53.7bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AACCCTAAAA
VGCCATAAAA
T G C A C G T A A T G C G A T C A T G C A G C T C T G A C T G A C G T A T G C A
T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AACCCTAAAA--
NGYCATAAAWCH
T G C A C G T A A T G C G A T C A T G C A G C T C T G A C T G A C G T A T G C A A C G T A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

PH0064.1_Hoxb9/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AACCCTAAAA----
AGAGCCATAAAATTCG
A C G T A C G T T G C A C G T A A T G C G A T C A T G C A G C T C T G A C T G A C G T A T G C A A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AACCCTAAAA
KGCCATAAAA
T G C A C G T A A T G C G A T C A T G C A G C T C T G A C T G A C G T A T G C A
C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A

HOXA13/MA0650.2/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AACCCTAAAA-
CCCAATAAAAC
T G C A C G T A A T G C G A T C A T G C A G C T C T G A C T G A C G T A T G C A A C G T
T G A C T A G C A G T C G T C A C G T A A C G T C T G A C T G A C G T A G T C A G T A C

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AACCCTAAAA-
-CYHATAAAAN
T G C A C G T A A T G C G A T C A T G C A G C T C T G A C T G A C G T A T G C A A C G T
A C G T T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AACCCTAAAA-
-GTCATAAAAN
T G C A C G T A A T G C G A T C A T G C A G C T C T G A C T G A C G T A T G C A A C G T
A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

HOXD12/MA0873.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AACCCTAAAA-
AGTCGTAAAAA
T G C A C G T A A T G C G A T C A T G C A G C T C T G A C T G A C G T A T G C A A C G T
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

HOXB13/MA0901.2/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AACCCTAAAA---
AACCAATAAAATTT
A C G T T G C A C G T A A T G C G A T C A T G C A G C T C T G A C T G A C G T A T G C A A C G T A C G T A C G T
C G T A C G T A G T A C G A T C G C T A C G T A A C G T C G T A G C T A G C T A G C T A G C A T G C A T G C A T

CDX1/MA0878.2/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AACCCTAAAA-
GGCCATAAAAC
T G C A C G T A A T G C G A T C A T G C A G C T C T G A C T G A C G T A T G C A A C G T
C A T G C T A G A G T C T G A C C G T A A C G T C T G A C G T A C T G A G T C A A G T C