Information for 1-AGTCGTGCCG (Motif 1)

C G T A A C T G A C G T A G T C A C T G A C G T A C T G A G T C A G T C A C T G
Reverse Opposite:
A G T C A C T G A C T G A G T C C G T A A G T C A C T G C G T A A G T C A C G T
p-value:1e-5
log p-value:-1.187e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets113.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer

Match Rank:1
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-AGTCGTGCCG-
NHGTCGTGAYDN
A C G T C G T A A C T G A C G T A G T C A C T G A C G T A C T G A G T C A G T C A C T G A C G T
C T A G G T C A C A T G A C G T A T G C T C A G C A G T A C T G G T C A A G T C C G A T A G T C

PB0180.1_Sp4_2/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AGTCGTGCCG--
CAAAGGCGTGGCCAG
A C G T A C G T A C G T C G T A A C T G A C G T A G T C A C T G A C G T A C T G A G T C A G T C A C T G A C G T A C G T
A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G

HES6/MA1493.1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AGTCGTGCCG
AACACGTGCC-
A C G T C G T A A C T G A C G T A G T C A C T G A C G T A C T G A G T C A G T C A C T G
C T G A C G T A A G T C T G C A A T G C T C A G G C A T A T C G A T G C T G A C A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGTCGTGCCG
RTACGTGC--
C G T A A C T G A C G T A G T C A C T G A C G T A C T G A G T C A G T C A C T G
C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T

ZFP57/MA1583.1/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AGTCGTGCCG----
-GCATTGCCGCAGT
C G T A A C T G A C G T A G T C A C T G A C G T A C T G A G T C A G T C A C T G A C G T A C G T A C G T A C G T
A C G T A T C G A T G C T C G A A C G T A C G T A T C G G A T C T A G C C T A G A T G C T C G A T A C G A G C T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGTCGTGCCG
GGACGTGC--
C G T A A C T G A C G T A G T C A C T G A C G T A C T G A G T C A G T C A C T G
T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T A C G T

HIF1A/MA1106.1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGTCGTGCCG
GTACGTGCCC
C G T A A C T G A C G T A G T C A C T G A C G T A C T G A G T C A G T C A C T G
T A C G A G C T C G T A A G T C C T A G A G C T T C A G G T A C A T G C A T G C

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGTCGTGCCG
-TACGTGCV-
C G T A A C T G A C G T A G T C A C T G A C G T A C T G A G T C A G T C A C T G
A C G T A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C A C G T

Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AGTCGTGCCG--
--NANTGCSGCA
C G T A A C T G A C G T A G T C A C T G A C G T A C T G A G T C A G T C A C T G A C G T A C G T
A C G T A C G T G A T C G C T A C A G T A C G T T A C G A G T C A T G C C T A G A G T C T C G A

PB0136.1_IRC900814_2/Jaspar

Match Rank:10
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------AGTCGTGCCG
ATGGAAAGTCGTAAAA
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A G T C A C T G A C G T A C T G A G T C A G T C A C T G
C T G A A G C T A C T G C T A G C T G A T C G A G T C A A C T G G A C T A G T C C A T G A C G T C T G A C G T A T C G A G C T A