Information for 5-GCTCGAAA (Motif 24)

A C T G A G T C A G C T A G T C C T A G C G T A C G T A G T C A
Reverse Opposite:
A C G T A C G T G C A T A G T C A C T G C T G A C T A G A G T C
p-value:1e-4
log p-value:-1.149e+01
Information Content per bp:1.828
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.79%
Number of Background Sequences with motif474.0
Percentage of Background Sequences with motif0.97%
Average Position of motif in Targets80.3 +/- 45.4bp
Average Position of motif in Background101.2 +/- 53.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GCTCGAAA---
GCTCGTAAAAA
A C T G A G T C A G C T A G T C C T A G C G T A C G T A G T C A A C G T A C G T A C G T
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---GCTCGAAA-----
AAACCTCGTAAAATTT
A C G T A C G T A C G T A C T G A G T C A G C T A G T C C T A G C G T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GCTCGAAA-----
AAAGCTCGTAAAATTT
A C G T A C G T A C G T A C T G A G T C A G C T A G T C C T A G C G T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

E2F(E2F)/Hela-CellCycle-Expression/Homer

Match Rank:4
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GCTCGAAA-
TTCGCGCGAAAA
A C G T A C G T A C G T A C T G A G T C A G C T A G T C C T A G C G T A C G T A G T C A A C G T
A G C T A G C T T A G C A T C G A G T C A C T G A T G C A T C G T C G A C T G A T C G A C T G A

E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCTCGAAA-
GGCGGGAAAH
A C G T A C T G A G T C A G C T A G T C C T A G C G T A C G T A G T C A A C G T
T A C G T A C G G T A C A T C G T A C G T A C G G T C A C T G A C G T A G A C T

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GCTCGAAA--
TGGCGGGAAAHB
A C G T A C G T A C T G A G T C A G C T A G T C C T A G C G T A C G T A G T C A A C G T A C G T
C G A T T A C G A T C G G T A C A C T G A T C G A C T G C T G A C T G A T G C A G C T A A T C G

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCTCGAAA
NGCTN----
A C G T A C T G A G T C A G C T A G T C C T A G C G T A C G T A G T C A
T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T

PB0115.1_Ehf_2/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCTCGAAA------
AAGATCGGAANTNNNA
A C G T A C G T A C T G A G T C A G C T A G T C C T A G C G T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T
C G T A G C T A A T C G C G T A C G A T T G A C C A T G C T A G C G T A C G T A T G C A G A C T G T C A A G T C G C A T G C T A

HOXC12/MA0906.1/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCTCGAAA---
GGTCGTAAAAA
A C T G A G T C A G C T A G T C C T A G C G T A C G T A G T C A A C G T A C G T A C G T
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A

HOXD10/MA1506.1/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCTCGAAA---
GGTCGTAAAAC
A C T G A G T C A G C T A G T C C T A G C G T A C G T A G T C A A C G T A C G T A C G T
T C A G T C A G A G C T G T A C T C A G A C G T C G T A C G T A G T C A G C T A G A T C