Information for 3-AAAGGCTTGG (Motif 4)

C G T A C G T A C G T A A C T G A C T G A G T C A C G T A C G T A T C G A C T G
Reverse Opposite:
A G T C T A G C C G T A C G T A C T A G A G T C A G T C A C G T A C G T C G A T
p-value:1e-7
log p-value:-1.741e+01
Information Content per bp:1.914
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif23.81%
Number of Background Sequences with motif204.0
Percentage of Background Sequences with motif0.43%
Average Position of motif in Targets79.4 +/- 75.3bp
Average Position of motif in Background101.7 +/- 68.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0180.1_Sp4_2/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AAAGGCTTGG----
CAAAGGCGTGGCCAG
A C G T C G T A C G T A C G T A A C T G A C T G A G T C A C G T A C G T A T C G A C T G A C G T A C G T A C G T A C G T
A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.65
Offset:2
Orientation:forward strand
Alignment:AAAGGCTTGG
--AGGCCTNG
C G T A C G T A C G T A A C T G A C T G A G T C A C G T A C G T A T C G A C T G
A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G

Nr2e3/MA0164.1/Jaspar

Match Rank:3
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:AAAGGCTTGG
--AAGCTTG-
C G T A C G T A C G T A A C T G A C T G A G T C A C G T A C G T A T C G A C T G
A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:4
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AAAGGCTTGG
--AGGCCTAG
C G T A C G T A C G T A A C T G A C T G A G T C A C G T A C G T A T C G A C T G
A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G

ZNF682/MA1599.1/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AAAGGCTTGG----
NNAGGGGCTTGGCCNN
A C G T A C G T C G T A C G T A C G T A A C T G A C T G A G T C A C G T A C G T A T C G A C T G A C G T A C G T A C G T A C G T
T C G A A G C T G C T A C A T G A T C G T C A G C T A G T A G C A C G T A C G T T C A G A T C G A G T C G A T C A G T C T C A G

Klf12/MA0742.1/Jaspar

Match Rank:6
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AAAGGCTTGG--
NANAAGGGCGTGGTC
A C G T A C G T A C G T C G T A C G T A C G T A A C T G A C T G A G T C A C G T A C G T A T C G A C T G A C G T A C G T
C G T A C G T A C G A T C G T A C G T A C T A G T C A G C T A G G A T C C A T G A C G T A T C G C A T G A G C T G T A C

Crx/MA0467.1/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AAAGGCTTGG
AAGAGGATTAG
A C G T C G T A C G T A C G T A A C T G A C T G A G T C A C G T A C G T A T C G A C T G
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

NFIC/MA0161.2/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:forward strand
Alignment:AAAGGCTTGG----
---TACTTGGCAGA
C G T A C G T A C G T A A C T G A C T G A G T C A C G T A C G T A T C G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A

Zfx/MA0146.2/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AAAGGCTTGG-----
-CAGGCCNNGGCCNN
C G T A C G T A C G T A A C T G A C T G A G T C A C G T A C G T A T C G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer

Match Rank:10
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----AAAGGCTTGG
ASATCAAAGG-----
A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G T A A C T G A C T G A G T C A C G T A C G T A T C G A C T G
C T G A A T C G G C T A G C A T T A G C C G T A T C G A C T G A T C A G T A C G A C G T A C G T A C G T A C G T A C G T