Information for 1-ATTCTAAA (Motif 9)

C G T A A G C T G C A T A G T C A C G T T G C A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T C G T A A C T G C G T A C T G A C G A T
p-value:1e-5
log p-value:-1.186e+01
Information Content per bp:1.788
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif58.82%
Number of Background Sequences with motif6249.3
Percentage of Background Sequences with motif12.36%
Average Position of motif in Targets105.2 +/- 64.6bp
Average Position of motif in Background99.8 +/- 65.3bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX2-5/MA0063.2/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-ATTCTAAA--
ACCACTCAAAA
A C G T C G T A A G C T G C A T A G T C A C G T T G C A C G T A C G T A A C G T A C G T
T C G A T G A C G A T C C T G A G A T C G C A T G A T C C G T A G C T A T C G A G C T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-ATTCTAAA---
NGYCATAAAWCH
A C G T C G T A A G C T G C A T A G T C A C G T T G C A C G T A C G T A A C G T A C G T A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--ATTCTAAA--
HDGYAATGAAAN
A C G T A C G T C G T A A G C T G C A T A G T C A C G T T G C A C G T A C G T A A C G T A C G T
G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A

BARHL1/MA0877.2/Jaspar

Match Rank:4
Score:0.63
Offset:3
Orientation:forward strand
Alignment:ATTCTAAA---
---CTAAACGG
C G T A A G C T G C A T A G T C A C G T T G C A C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T A G C C G A T C G T A G T C A C G T A A G T C C T A G C A T G

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-ATTCTAAA-
VGCCATAAAA
A C G T C G T A A G C T G C A T A G T C A C G T T G C A C G T A C G T A A C G T
T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:ATTCTAAA--
CYHATAAAAN
C G T A A G C T G C A T A G T C A C G T T G C A C G T A C G T A A C G T A C G T
T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C

BARHL2/MA0635.1/Jaspar

Match Rank:7
Score:0.61
Offset:2
Orientation:forward strand
Alignment:ATTCTAAA----
--GCTAAACGGT
C G T A A G C T G C A T A G T C A C G T T G C A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-ATTCTAAA-
RSCACTYRAG
A C G T C G T A A G C T G C A T A G T C A C G T T G C A C G T A C G T A A C G T
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-ATTCTAAA-
GGCMATGAAA
A C G T C G T A A G C T G C A T A G T C A C G T T G C A C G T A C G T A A C G T
C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A

HOXD11/MA0908.1/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:ATTCTAAA--
GTCGTAAAAA
C G T A A G C T G C A T A G T C A C G T T G C A C G T A C G T A A C G T A C G T
T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A