Information for 13-TCCATCGTGA (Motif 24)

A C G T A G T C A G T C C G T A A C G T A G T C A C T G A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A A G T C A C T G C G T A A C G T A C T G A C T G C G T A
p-value:1e-3
log p-value:-8.240e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif9.09%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets196.0 +/- 0.0bp
Average Position of motif in Background148.6 +/- 19.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer

Match Rank:1
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:TCCATCGTGA---
-NHGTCGTGAYDN
A C G T A G T C A G T C C G T A A C G T A G T C A C T G A C G T A C T G C G T A A C G T A C G T A C G T
A C G T C T A G G T C A C A T G A C G T A T G C T C A G C A G T A C T G G T C A A G T C C G A T A G T C

SOX2/MA0143.4/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TCCATCGTGA
NNCCATTGTNN
A C G T A C G T A G T C A G T C C G T A A C G T A G T C A C T G A C G T A C T G C G T A
C G A T G C A T G A T C G A T C G C T A A G C T C G A T C T A G C G A T G C A T G C A T

SOX18/MA1563.1/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TCCATCGTGA
-GCATTGTN-
A C G T A G T C A G T C C G T A A C G T A G T C A C T G A C G T A C T G C G T A
A C G T A T C G A G T C C T G A A C G T A G C T A C T G G A C T A T C G A C G T

SOX13/MA1120.1/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TCCATCGTGA
NNCCATTGTNN
A C G T A C G T A G T C A G T C C G T A A C G T A G T C A C T G A C G T A C T G C G T A
C G A T A C T G A G T C G A T C C G T A G A C T C G A T T C A G G A C T A G C T G A C T

YY1/MA0095.2/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TCCATCGTGA
GCNGCCATCTTG-
A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A G T C A C T G A C G T A C T G C G T A
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:6
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----TCCATCGTGA
GYCATCMATCAT--
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A G T C A C T G A C G T A C T G C G T A
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T

HOXA9/MA0594.2/Jaspar

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TCCATCGTGA---
---GTCGTAAACG
A C G T A G T C A G T C C G T A A C G T A G T C A C T G A C G T A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T C A G G A C T G T A C T C A G A G C T G C T A G C T A G C T A G A T C T A C G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TCCATCGTGA-
-CCATTGTTYB
A C G T A G T C A G T C C G T A A C G T A G T C A C T G A C G T A C T G C G T A A C G T
A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

PB0168.1_Sox14_2/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TCCATCGTGA---
NNNCCATTGTGTNAN
A C G T A C G T A C G T A G T C A G T C C G T A A C G T A G T C A C T G A C G T A C T G C G T A A C G T A C G T A C G T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

Sox17/MA0078.1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TCCATCGTGA
CTCATTGTC-
A C G T A G T C A G T C C G T A A C G T A G T C A C T G A C G T A C T G C G T A
G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T