Information for 1-CGYCTGWGAT (Motif 8)

A G T C A C T G A G C T A G T C A C G T A C T G C G A T A T C G C G T A A C G T
Reverse Opposite:
T G C A C G A T A T G C C G T A A G T C C G T A A C T G C T G A A G T C A C T G
p-value:1e-9
log p-value:-2.155e+01
Information Content per bp:1.818
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.45%
Number of Background Sequences with motif55.6
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets79.4 +/- 52.2bp
Average Position of motif in Background99.5 +/- 60.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---CGYCTGWGAT
VBSYGTCTGG---
A C G T A C G T A C G T A G T C A C T G A G C T A G T C A C G T A C T G C G A T A T C G C G T A A C G T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CGYCTGWGAT
CTGTCTGG---
A C G T A G T C A C T G A G C T A G T C A C G T A C T G C G A T A T C G C G T A A C G T
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CGYCTGWGAT
--GCTGTG--
A G T C A C T G A G C T A G T C A C G T A C T G C G A T A T C G C G T A A C G T
A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CGYCTGWGAT
GGTCTGGCAT
A G T C A C T G A G C T A G T C A C G T A C T G C G A T A T C G C G T A A C G T
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CGYCTGWGAT--
TGTCTGDCACCT
A G T C A C T G A G C T A G T C A C G T A C T G C G A T A T C G C G T A A C G T A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:6
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CGYCTGWGAT-
-VGCTGWCAVB
A G T C A C T G A G C T A G T C A C G T A C T G C G A T A T C G C G T A A C G T A C G T
A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

HAND2/MA1638.1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CGYCTGWGAT
NNCATCTGNN--
A C G T A C G T A G T C A C T G A G C T A G T C A C G T A C T G C G A T A T C G C G T A A C G T
C T A G T G A C A G T C T C G A A G C T T G A C A G C T T A C G A C T G G A C T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----CGYCTGWGAT--
NNTNNTGTCTGGNNTNG
A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G C T A G T C A C G T A C T G C G A T A T C G C G T A A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

PB0151.1_Myf6_2/Jaspar

Match Rank:9
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CGYCTGWGAT-
GGNGCGNCTGTTNNN
A C G T A C G T A C G T A C G T A G T C A C T G A G C T A G T C A C G T A C T G C G A T A T C G C G T A A C G T A C G T
C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T

PH0141.1_Pknox2/Jaspar

Match Rank:10
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CGYCTGWGAT---
AAGCACCTGTCAATAT
A C G T A C G T A C G T A G T C A C T G A G C T A G T C A C G T A C T G C G A T A T C G C G T A A C G T A C G T A C G T A C G T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T