Information for 3-TGCCCGATAT (Motif 5)

A C G T A C T G A G T C A G T C A G T C A C T G C G T A A C G T C G T A A C G T
Reverse Opposite:
C G T A A C G T C G T A A C G T A G T C A C T G A C T G A C T G A G T C C G T A
p-value:1e-4
log p-value:-1.053e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets153.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0133.1_Hic1_2/Jaspar

Match Rank:1
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----TGCCCGATAT-
GGGTGTGCCCAAAAGG
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G T C A C T G C G T A A C G T C G T A A C G T A C G T
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

RORC/MA1151.1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TGCCCGATAT--
TGACCTANTTAN
A C G T A C T G A G T C A G T C A G T C A C T G C G T A A C G T C G T A A C G T A C G T A C G T
G A C T T C A G T G C A G A T C G T A C A G C T T G C A T A G C G C A T C G A T G C T A G A C T

HIC2/MA0738.1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TGCCCGATAT
ATGCCCACC--
A C G T A C G T A C T G A G T C A G T C A G T C A C T G C G T A A C G T C G T A A C G T
T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T A C G T

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:4
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TGCCCGATAT-
NNHYTGACCTAGWTT
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G T C A C T G C G T A A C G T C G T A A C G T A C G T
A C G T G A T C G A C T G A T C A C G T A C T G T C G A A G T C A G T C A G C T C T G A T C A G C G A T C G A T G C A T

THAP1/MA0597.1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TGCCCGATAT
CTGCCCGCA--
A C G T A C G T A C T G A G T C A G T C A G T C A C T G C G T A A C G T C G T A A C G T
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGCCCGATAT
TGACCTARTT
A C G T A C T G A G T C A G T C A G T C A C T G C G T A A C G T C G T A A C G T
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGCCCGATAT
TGACCTARTT
A C G T A C T G A G T C A G T C A G T C A C T G C G T A A C G T C G T A A C G T
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORB/MA1150.1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TGCCCGATAT
NTGACCTAATT
A C G T A C G T A C T G A G T C A G T C A G T C A C T G C G T A A C G T C G T A A C G T
C T A G G A C T C T A G T C G A G A T C T G A C G A C T T G C A G C T A C G A T G C A T

OVOL2/MA1545.1/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TGCCCGATAT---
GTACCGTTATGTG
A C G T A C T G A G T C A G T C A G T C A C T G C G T A A C G T C G T A A C G T A C G T A C G T A C G T
C T A G C G A T G C T A T A G C A T G C A C T G A G C T A C G T T C G A A G C T C A T G G A C T A T C G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TGCCCGATAT
ATGCCAGACN-
A C G T A C G T A C T G A G T C A G T C A G T C A C T G C G T A A C G T C G T A A C G T
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T