Information for 16-TTAATTGCCACT (Motif 29)

A C G T A C G T C G T A C G T A A C G T A C G T A C T G A G T C A G T C C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G A C G T A C T G A C T G A G T C C G T A C G T A A C G T A C G T C G T A C G T A
p-value:1e-3
log p-value:-8.288e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif6.25%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets112.0 +/- 0.0bp
Average Position of motif in Background147.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0063.1_Hoxb8/Jaspar

Match Rank:1
Score:0.78
Offset:-4
Orientation:reverse strand
Alignment:----TTAATTGCCACT
TTTATTAATTGCNNGN
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C T G A G T C A G T C C G T A A G T C A C G T
G C A T G A C T A C G T C T G A C G A T G C A T C G T A C G T A A C G T C A G T C T A G G A T C G T A C T C A G A T C G C G A T

Hmx1/MA0896.1/Jaspar

Match Rank:2
Score:0.74
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATTGCCACT
ANNCATTAATTGCTNGN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C T G A G T C A G T C C G T A A G T C A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:3
Score:0.74
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATTGCCACT
ANNCATTAATTGCTNGN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C T G A G T C A G T C C G T A A G T C A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

HOXB7/MA1501.1/Jaspar

Match Rank:4
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-TTAATTGCCACT
GNTAATTACC---
A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C T G A G T C A G T C C G T A A G T C A C G T
A T C G A G C T A G C T C G T A G T C A A C G T A C G T T C G A G T A C A G T C A C G T A C G T A C G T

HOXA6/MA1497.1/Jaspar

Match Rank:5
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TTAATTGCCACT
NNTAATTACN---
A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C T G A G T C A G T C C G T A A G T C A C G T
T A C G G A C T G C A T G C T A C G T A A G C T C A G T T C G A T A G C T G A C A C G T A C G T A C G T

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TTAATTGCCACT
TTTNATTGCY---
A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C T G A G T C A G T C C G T A A G T C A C G T
A C G T A C G T C G A T A C G T G T C A A C G T C A G T C T A G A T G C G A T C A C G T A C G T A C G T

Hmx3/MA0898.1/Jaspar

Match Rank:7
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATTGCCACT
ATTNNTTAATTGCTTGT
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C T G A G T C A G T C C G T A A G T C A C G T
G C T A G C A T A G C T A G T C C G A T G C A T G C A T C T G A C G T A C A G T G A C T C T A G G A T C A G C T A C G T T A C G A C G T

PH0043.1_Hmx3/Jaspar

Match Rank:8
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATTGCCACT
ATTNNTTAATTGCTTGT
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C T G A G T C A G T C C G T A A G T C A C G T
G C T A G C A T A G C T A G T C C G A T G C A T G C A T C T G A C G T A C A G T G A C T C T A G G A T C A G C T A C G T T A C G A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TTAATTGCCACT
GTTAATGGCC---
A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C T G A G T C A G T C C G T A A G T C A C G T
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T A C G T

Msx3/MA0709.1/Jaspar

Match Rank:10
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TTAATTGCCACT
NTAATTGN----
A C G T A C G T C G T A C G T A A C G T A C G T A C T G A G T C A G T C C G T A A G T C A C G T
A G C T G C A T C T G A C G T A A C G T A G C T C T A G A T C G A C G T A C G T A C G T A C G T