Information for 4-TCATTAAAGVCA (Motif 4)

A C G T T A G C C T G A A C G T C G A T C T G A G T C A C G T A C T A G T C G A A G T C G T C A
Reverse Opposite:
A C G T A C T G A C G T A G T C C G A T A C G T A G C T C G T A C G T A A G C T A T C G C G T A
p-value:1e-4
log p-value:-1.076e+01
Information Content per bp:1.732
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1854.2
Percentage of Background Sequences with motif1.03%
Average Position of motif in Targets134.5 +/- 30.3bp
Average Position of motif in Background97.7 +/- 108.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC10/MA0905.1/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TCATTAAAGVCA
GTCGTAAAAT---
A C G T A C G T T A G C C T G A A C G T C G A T C T G A G T C A C G T A C T A G T C G A A G T C G T C A
T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T A C G T A C G T A C G T

NKX6-3/MA1530.1/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TCATTAAAGVCA
CTCATTAAA----
A C G T A C G T T A G C C T G A A C G T C G A T C T G A G T C A C G T A C T A G T C G A A G T C G T C A
T A G C A G C T A G T C C G T A A C G T A G C T C T G A G C T A G C T A A C G T A C G T A C G T A C G T

PH0150.1_Pou4f3/Jaspar

Match Rank:3
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----TCATTAAAGVCA
GACNTCATTAATAANN
A C G T A C G T A C G T A C G T A C G T T A G C C T G A A C G T C G A T C T G A G T C A C G T A C T A G T C G A A G T C G T C A
C T A G C T G A T G A C G A T C C A G T G T A C C G T A C G A T C G A T C G T A C T G A C G A T C G T A G T C A A G T C C G A T

HOXD11/MA0908.1/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TCATTAAAGVCA
GTCGTAAAAA---
A C G T A C G T T A G C C T G A A C G T C G A T C T G A G T C A C G T A C T A G T C G A A G T C G T C A
T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A A C G T A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TCATTAAAGVCA
TGATTRATGGCY
A C G T T A G C C T G A A C G T C G A T C T G A G T C A C G T A C T A G T C G A A G T C G T C A
C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

HOXC11/MA0651.1/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TCATTAAAGVCA
GGTCGTAAAAT---
A C G T A C G T A C G T T A G C C T G A A C G T C G A T C T G A G T C A C G T A C T A G T C G A A G T C G T C A
C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T A C G T A C G T A C G T

Hoxa11/MA0911.1/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TCATTAAAGVCA
GGTCGTAAAATT--
A C G T A C G T A C G T T A G C C T G A A C G T C G A T C T G A G T C A C G T A C T A G T C G A A G T C G T C A
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T A C G T A C G T

HOXA4/MA1496.1/Jaspar

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TCATTAAAGVCA
GTCATTAG-----
A C G T A C G T T A G C C T G A A C G T C G A T C T G A G T C A C G T A C T A G T C G A A G T C G T C A
T C A G A G C T T G A C C T G A A C G T A G C T T C G A T C A G A C G T A C G T A C G T A C G T A C G T

HOXB9/MA1503.1/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TCATTAAAGVCA
GTCGTAAAAT---
A C G T A C G T T A G C C T G A A C G T C G A T C T G A G T C A C G T A C T A G T C G A A G T C G T C A
T C A G A G C T A G T C T C A G A C G T G C T A C G T A G T C A G C T A G A C T A C G T A C G T A C G T

HOXC4/MA1504.1/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TCATTAAAGVCA
GTCATTAA-----
A C G T A C G T T A G C C T G A A C G T C G A T C T G A G T C A C G T A C T A G T C G A A G T C G T C A
T C A G G A C T G T A C C T G A A C G T A C G T C T G A T C G A A C G T A C G T A C G T A C G T A C G T