Information for 3-CTTRWAWWCWWC (Motif 3)

A G T C A C G T A C G T C T G A C G T A C G T A C G A T C G A T A G T C C G A T C G A T A G T C
Reverse Opposite:
A C T G C G T A C G T A A C T G C G T A C G T A A C G T C G A T A G C T C G T A C G T A A C T G
p-value:1e-5
log p-value:-1.334e+01
Information Content per bp:1.818
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif92.3
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets55.0 +/- 21.4bp
Average Position of motif in Background98.7 +/- 74.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0114.1_Nkx2-5/Jaspar

Match Rank:1
Score:0.57
Offset:-7
Orientation:forward strand
Alignment:-------CTTRWAWWCWWC
TAAGCCACTTGAATTT---
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T C T G A C G T A C G T A C G A T C G A T A G T C C G A T C G A T A G T C
G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T A C G T A C G T A C G T

PB0158.1_Rfx3_2/Jaspar

Match Rank:2
Score:0.56
Offset:-7
Orientation:forward strand
Alignment:-------CTTRWAWWCWWC----
ACTGACCCTTGGTTACCACAAAG
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T C T G A C G T A C G T A C G A T C G A T A G T C C G A T C G A T A G T C A C G T A C G T A C G T A C G T
T G C A A G T C A C G T A T C G G C T A A T G C T A C G A T G C G C A T C G A T T C A G A C T G C G A T C A G T C G T A G A T C T G A C T C G A T G A C T C G A T C G A C G T A A T C G

POL012.1_TATA-Box/Jaspar

Match Rank:3
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------CTTRWAWWCWWC
NNNNNNCTTTTATAN---
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T C T G A C G T A C G T A C G A T C G A T A G T C C G A T C G A T A G T C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T

TBP/MA0108.2/Jaspar

Match Rank:4
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------CTTRWAWWCWWC
NNNNNNCTTTTATAN---
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T C T G A C G T A C G T A C G A T C G A T A G T C C G A T C G A T A G T C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:5
Score:0.54
Offset:-7
Orientation:forward strand
Alignment:-------CTTRWAWWCWWC
TAAGCCACTTGAAATT---
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T C T G A C G T A C G T A C G A T C G A T A G T C C G A T C G A T A G T C
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T A C G T A C G T A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:6
Score:0.54
Offset:-7
Orientation:forward strand
Alignment:-------CTTRWAWWCWWC
ATAACCACTTGAAAATT--
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T C T G A C G T A C G T A C G A T C G A T A G T C C G A T C G A T A G T C
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:7
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CTTRWAWWCWWC
CCTTTTATAGNC-
A C G T A G T C A C G T A C G T C T G A C G T A C G T A C G A T C G A T A G T C C G A T C G A T A G T C
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:8
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CTTRWAWWCWWC
CCACTTGAA------
A C G T A C G T A C G T A G T C A C G T A C G T C T G A C G T A C G T A C G A T C G A T A G T C C G A T C G A T A G T C
T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0174.1_Sox30_2/Jaspar

Match Rank:9
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----CTTRWAWWCWWC
NCGTATTATAATCNTA
A C G T A C G T A C G T A C G T A G T C A C G T A C G T C T G A C G T A C G T A C G A T C G A T A G T C C G A T C G A T A G T C
A T G C A G T C A C T G A C G T G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G A C G C A T C A G T C T G A

HLTF/MA0109.1/Jaspar

Match Rank:10
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---CTTRWAWWCWWC
AACCTTATAT-----
A C G T A C G T A C G T A G T C A C G T A C G T C T G A C G T A C G T A C G A T C G A T A G T C C G A T C G A T A G T C
C G T A G C T A G T A C A G T C C G A T A C G T C G T A A C G T T C G A G A C T A C G T A C G T A C G T A C G T A C G T