Information for 12-AAAACCCTAAAA (Motif 12)

G T C A C T G A T C G A T G C A G A T C G A T C A G T C A C G T C G T A G T C A C G T A C T G A
Reverse Opposite:
G A C T C G A T A C G T C G A T C G T A A C T G C T A G C T A G A C G T A C G T A G C T C A G T
p-value:1e-10
log p-value:-2.398e+01
Information Content per bp:1.862
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif11.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets92.7 +/- 53.6bp
Average Position of motif in Background108.8 +/- 40.3bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.75
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0064.1_Hoxb9/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AAAACCCTAAAA----
AGAGCCATAAAATTCG
G T C A C T G A T C G A T G C A G A T C G A T C A G T C A C G T C G T A G T C A C G T A C T G A A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:2
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AAAACCCTAAAA
--VGCCATAAAA
G T C A C T G A T C G A T G C A G A T C G A T C A G T C A C G T C G T A G T C A C G T A C T G A
A C G T A C G T T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:3
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AAAACCCTAAAA--
--NGYCATAAAWCH
G T C A C T G A T C G A T G C A G A T C G A T C A G T C A C G T C G T A G T C A C G T A C T G A A C G T A C G T
A C G T A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:AAAACCCTAAAA
--KGCCATAAAA
G T C A C T G A T C G A T G C A G A T C G A T C A G T C A C G T C G T A G T C A C G T A C T G A
A C G T A C G T C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A

PH0047.1_Hoxa11/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AAAACCCTAAAA---
TAAAGTCGTAAAACAT
A C G T G T C A C T G A T C G A T G C A G A T C G A T C A G T C A C G T C G T A G T C A C G T A C T G A A C G T A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

HOXB13/MA0901.2/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AAAACCCTAAAA---
-AACCAATAAAATTT
G T C A C T G A T C G A T G C A G A T C G A T C A G T C A C G T C G T A G T C A C G T A C T G A A C G T A C G T A C G T
A C G T C G T A C G T A G T A C G A T C G C T A C G T A A C G T C G T A G C T A G C T A G C T A G C A T G C A T G C A T

PH0066.1_Hoxc11/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AAAACCCTAAAA---
TAAAGTCGTAAAATAG
A C G T G T C A C T G A T C G A T G C A G A T C G A T C A G T C A C G T C G T A G T C A C G T A C T G A A C G T A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

PB0141.1_Isgf3g_2/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AAAACCCTAAAA
GCAAAACATTACTA
A C G T A C G T G T C A C T G A T C G A T G C A G A T C G A T C A G T C A C G T C G T A G T C A C G T A C T G A
A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A

PH0075.1_Hoxd10/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AAAACCCTAAAA-----
AATGCAATAAAATTTAT
G T C A C T G A T C G A T G C A G A T C G A T C A G T C A C G T C G T A G T C A C G T A C T G A A C G T A C G T A C G T A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

Nkx3-2/MA0122.3/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AAAACCCTAAAA
ATAACCACTTAAA
A C G T G T C A C T G A T C G A T G C A G A T C G A T C A G T C A C G T C G T A G T C A C G T A C T G A
C G T A C G A T C G T A C G T A T G A C G A T C G C T A G T A C G C A T G A C T G C T A C G T A G C T A