Information for 22-CTTACCTAGT (Motif 41)

A G T C A C G T A C G T C G T A A G T C A G T C A C G T C G T A A C T G A C G T
Reverse Opposite:
C G T A A G T C A C G T C G T A A C T G A C T G A C G T C G T A C G T A A C T G
p-value:1e-3
log p-value:-6.995e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif10.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.0 +/- 0.0bp
Average Position of motif in Background144.7 +/- 59.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---CTTACCTAGT
NNACTTACCTN--
A C G T A C G T A C G T A G T C A C G T A C G T C G T A A G T C A G T C A C G T C G T A A C T G A C G T
C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G A C G T A C G T

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CTTACCTAGT--
BTGACCTAVTTW
A G T C A C G T A C G T C G T A A G T C A G T C A C G T C G T A A C T G A C G T A C G T A C G T
A G T C A C G T T C A G T C G A A G T C A G T C A G C T C T G A T C A G C G A T G C A T G C A T

PH0040.1_Hmbox1/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---CTTACCTAGT----
GANGTTAACTAGTTTNN
A C G T A C G T A C G T A G T C A C G T A C G T C G T A A G T C A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CTTACCTAGT-
-TGACCTARTT
A G T C A C G T A C G T C G T A A G T C A G T C A C G T C G T A A C T G A C G T A C G T
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CTTACCTAGT-
-TGACCTARTT
A G T C A C G T A C G T C G T A A G T C A G T C A C G T C G T A A C T G A C G T A C G T
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

HMBOX1/MA0895.1/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CTTACCTAGT
GTTAACTAGN
A G T C A C G T A C G T C G T A A G T C A G T C A C G T C G T A A C T G A C G T
A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CTTACCTAGT----
TTGACCTANTTATN
A G T C A C G T A C G T C G T A A G T C A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:8
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CTTACCTAGT--
NNHYTGACCTAGWTT
A C G T A C G T A C G T A G T C A C G T A C G T C G T A A G T C A G T C A C G T C G T A A C T G A C G T A C G T A C G T
A C G T G A T C G A C T G A T C A C G T A C T G T C G A A G T C A G T C A G C T C T G A T C A G C G A T C G A T G C A T

GATA2/MA0036.3/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CTTACCTAGT
TTCTTATCTTT-
A C G T A C G T A G T C A C G T A C G T C G T A A G T C A G T C A C G T C G T A A C T G A C G T
C G A T A G C T A G T C G C A T G C A T C G T A G C A T A G T C G C A T A G C T G A C T A C G T

PH0168.1_Hnf1b/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CTTACCTAGT---
AGCTGTTAACTAGCCGT
A C G T A C G T A C G T A C G T A G T C A C G T A C G T C G T A A G T C A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T
C G T A A C T G A G T C A C G T C T A G G C A T G A C T C G T A G C T A A G T C A G C T C G T A T C A G A G T C G A T C A T C G A G C T