Information for 3-CATGTGTGTCTG (Motif 3)

A G T C G T C A A G C T A C T G A C G T A C T G A C G T A T C G A C G T A T G C A C G T A C T G
Reverse Opposite:
A G T C C G T A A T C G T G C A T A G C C G T A G T A C C G T A A G T C T C G A A C G T A C T G
p-value:1e-14
log p-value:-3.392e+01
Information Content per bp:1.875
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif3.31%
Number of Background Sequences with motif215.0
Percentage of Background Sequences with motif0.46%
Average Position of motif in Targets98.9 +/- 51.1bp
Average Position of motif in Background97.1 +/- 77.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.32
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MXI1/MA1108.2/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--CATGTGTGTCTG
NNCATGTGNN----
A C G T A C G T A G T C G T C A A G C T A C T G A C G T A C T G A C G T A T C G A C G T A T G C A C G T A C T G
T A C G T G A C G A T C C T G A A G C T T C A G G A C T C T A G A G C T G A T C A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CATGTGTGTCTG-
GTCATGCHTGRCTGS
A C G T A C G T A G T C G T C A A G C T A C T G A C G T A C T G A C G T A T C G A C G T A T G C A C G T A C T G A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

Twist2/MA0633.1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CATGTGTGTCTG
ACCATATGTT----
A C G T A C G T A G T C G T C A A G C T A C T G A C G T A C T G A C G T A T C G A C G T A T G C A C G T A C T G
C T G A G T A C A G T C C G T A A G C T C T G A A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CATGTGTGTCTG
CACGTGTGCH--
A G T C G T C A A G C T A C T G A C G T A C T G A C G T A T C G A C G T A T G C A C G T A C T G
A G T C C G T A A G T C C T A G A C G T A C T G A C G T C A T G A G T C G A C T A C G T A C G T

Ptf1a(var.3)/MA1620.1/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CATGTGTGTCTG
NNACAGGTGTNN---
A C G T A C G T A C G T A G T C G T C A A G C T A C T G A C G T A C T G A C G T A T C G A C G T A T G C A C G T A C T G
C T A G T G A C T C G A T G A C T G C A A T C G T A C G G C A T A C T G A G C T A C T G A G C T A C G T A C G T A C G T

Rbpjl/MA1621.1/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CATGTGTGTCTG
NNNACAGGTGTNNN--
A C G T A C G T A C G T A C G T A G T C G T C A A G C T A C T G A C G T A C T G A C G T A T C G A C G T A T G C A C G T A C T G
T C A G C T A G T A C G T C G A T A G C T C G A A T C G T A C G G A C T C A T G A G C T A C G T A G T C T A C G A C G T A C G T

Npas2/MA0626.1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CATGTGTGTCTG
GGCACGTGTC----
A C G T A C G T A G T C G T C A A G C T A C T G A C G T A C T G A C G T A T C G A C G T A T G C A C G T A C T G
C T A G T A C G A G T C C G T A G T A C C T A G A C G T C T A G A C G T G T A C A C G T A C G T A C G T A C G T

CLOCK/MA0819.1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CATGTGTGTCTG
AACACGTGTT----
A C G T A C G T A G T C G T C A A G C T A C T G A C G T A C T G A C G T A T C G A C G T A T G C A C G T A C T G
C T G A T C G A T G A C T C G A A G T C C T A G A G C T A C T G A G C T G A C T A C G T A C G T A C G T A C G T

Mlxip/MA0622.1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CATGTGTGTCTG
GCACGTGT-----
A C G T A G T C G T C A A G C T A C T G A C G T A C T G A C G T A T C G A C G T A T G C A C G T A C T G
A C T G A G T C C G T A A G T C A C T G A C G T A C T G C A G T A C G T A C G T A C G T A C G T A C G T

TFAP4(var.2)/MA1570.1/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CATGTGTGTCTG
AACATATGTT----
A C G T A C G T A G T C G T C A A G C T A C T G A C G T A C T G A C G T A T C G A C G T A T G C A C G T A C T G
T C G A G T C A A G T C C T G A A G C T T C G A A C G T A T C G C A G T A G C T A C G T A C G T A C G T A C G T