Information for 17-GAGCATACTA (Motif 36)

A C T G C G T A A C T G A G T C C G T A A C G T C G T A A G T C A C G T C G T A
Reverse Opposite:
A C G T C G T A A C T G A C G T C G T A A C G T A C T G A G T C A C G T A G T C
p-value:1e-3
log p-value:-7.306e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets181.0 +/- 0.0bp
Average Position of motif in Background127.0 +/- 61.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:1
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GAGCATACTA---
ATTTGCATACAATGG
A C G T A C G T A C T G C G T A A C T G A G T C C G T A A C G T C G T A A G T C A C G T C G T A A C G T A C G T A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

PB0181.1_Spdef_2/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GAGCATACTA----
GATAACATCCTAGTAG
A C G T A C G T A C T G C G T A A C T G A G T C C G T A A C G T C G T A A G T C A C G T C G T A A C G T A C G T A C G T A C G T
C T A G C G T A A C G T G C T A C T G A A G T C C G T A C G A T G A T C A G T C A G C T G C T A A C T G G C A T C G T A T C A G

ZKSCAN1/MA1585.1/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GAGCATACTA-
-CACCTACTAT
A C T G C G T A A C T G A G T C C G T A A C G T C G T A A G T C A C G T C G T A A C G T
A C G T A T G C T C G A G T A C T A G C A C G T C G T A G A T C A C G T T C G A A G C T

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GAGCATACTA----
CGAAGCACACAAAATA
A C G T A C G T A C T G C G T A A C T G A G T C C G T A A C G T C G T A A G T C A C G T C G T A A C G T A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer

Match Rank:5
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GAGCATACTA-----
RGMCCTACTRTGTGC
A C T G C G T A A C T G A G T C C G T A A C G T C G T A A G T C A C G T C G T A A C G T A C G T A C G T A C G T A C G T
C T A G T C A G T G C A A G T C A G T C A G C T C G T A G T A C A G C T T C G A A G C T A T C G A G C T C T A G G A T C

POL013.1_MED-1/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GAGCATACTA
CGGAGC------
A C G T A C G T A C T G C G T A A C T G A G T C C G T A A C G T C G T A A G T C A C G T C G T A
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GAGCATACTA
CAGCC-----
A C T G C G T A A C T G A G T C C G T A A C G T C G T A A G T C A C G T C G T A
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GAGCATACTA
ATTTGCATA---
A C G T A C G T A C T G C G T A A C T G A G T C C G T A A C G T C G T A A G T C A C G T C G T A
G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A A C G T A C G T A C G T

PH0145.1_Pou2f3/Jaspar

Match Rank:9
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------GAGCATACTA
TNTAATTTGCATACNA
A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A G T C C G T A A C G T C G T A A G T C A C G T C G T A
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

TEAD3/MA0808.1/Jaspar

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GAGCATACTA
--ACATTCCA
A C T G C G T A A C T G A G T C C G T A A C G T C G T A A G T C A C G T C G T A
A C G T A C G T C T G A T G A C C G T A A C G T C G A T A G T C A G T C C G T A