Information for 1-GAGGCTTTGCAG (Motif 2)

C T A G C G T A T A C G A T C G G T A C A C G T A C G T C G A T A C T G G T A C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G G T A C C G T A G T C A C G T A A C T G A T G C A T G C A C G T A G T C
p-value:1e-6
log p-value:-1.530e+01
Information Content per bp:1.796
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif27.27%
Number of Background Sequences with motif93.1
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets82.3 +/- 54.4bp
Average Position of motif in Background101.8 +/- 87.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:1
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GAGGCTTTGCAG-
---CCTTTGAWGT
C T A G C G T A T A C G A T C G G T A C A C G T A C G T C G A T A C T G G T A C C G T A A C T G A C G T
A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GAGGCTTTGCAG-
---CCTTTGATGT
C T A G C G T A T A C G A T C G G T A C A C G T A C G T C G A T A C T G G T A C C G T A A C T G A C G T
A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

Crx/MA0467.1/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GAGGCTTTGCAG
AAGAGGATTAG---
A C G T A C G T C T A G C G T A T A C G A T C G G T A C A C G T A C G T C G A T A C T G G T A C C G T A A C T G
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T A C G T A C G T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GAGGCTTTGCAG--
TGACANARRCCAGRC
A C G T C T A G C G T A T A C G A T C G G T A C A C G T A C G T C G A T A C T G G T A C C G T A A C T G A C G T A C G T
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer

Match Rank:5
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GAGGCTTTGCAG-
---GATTTGCATA
C T A G C G T A T A C G A T C G G T A C A C G T A C G T C G A T A C T G G T A C C G T A A C T G A C G T
A C G T A C G T A C G T A C T G G T C A A C G T G C A T C G A T T C A G G T A C G T C A A C G T C T G A

TCF7/MA0769.2/Jaspar

Match Rank:6
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GAGGCTTTGCAG-
--TCCTTTGATGT
C T A G C G T A T A C G A T C G G T A C A C G T A C G T C G A T A C T G G T A C C G T A A C T G A C G T
A C G T A C G T A C G T A G T C T G A C G C A T C G A T C G A T A C T G C G T A C G A T T A C G G C A T

LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer

Match Rank:7
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GAGGCTTTGCAG-
---CCTTTGATST
C T A G C G T A T A C G A T C G G T A C A C G T A C G T C G A T A C T G G T A C C G T A A C T G A C G T
A C G T A C G T A C G T A T G C A G T C A G C T A G C T A C G T A T C G C G T A C G A T T A G C G A C T

NFIC/MA0161.2/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GAGGCTTTGCAG-
--TACTTGGCAGA
C T A G C G T A T A C G A T C G G T A C A C G T A C G T C G A T A C T G G T A C C G T A A C T G A C G T
A C G T A C G T G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A

POU5F1/MA1115.1/Jaspar

Match Rank:9
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GAGGCTTTGCAG--
---NATTTGCATNN
C T A G C G T A T A C G A T C G G T A C A C G T A C G T C G A T A C T G G T A C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T G T C A C G T A C G A T G A C T C G A T T C A G G A T C C T G A A G C T C G T A G C A T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GAGGCTTTGCAG--
----ATTTGCATAA
C T A G C G T A T A C G A T C G G T A C A C G T A C G T C G A T A C T G G T A C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A