Information for 19-CCAGTAATCT (Motif 34)

A G T C A G T C C G T A A C T G A C G T C G T A C G T A A C G T A G T C A C G T
Reverse Opposite:
C G T A A C T G C G T A A C G T A C G T C G T A A G T C A C G T A C T G A C T G
p-value:1e-2
log p-value:-6.807e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif24.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets99.0 +/- 0.0bp
Average Position of motif in Background119.8 +/- 58.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:1
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CCAGTAATCT-
---YTAATCCY
A G T C A G T C C G T A A C T G A C G T C G T A C G T A A C G T A G T C A C G T A C G T
A C G T A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C

GATA1/MA0035.4/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CCAGTAATCT--
-TTCTAATCTAT
A G T C A G T C C G T A A C T G A C G T C G T A C G T A A C G T A G T C A C G T A C G T A C G T
A C G T C G A T G C A T G T A C C G A T C G T A G C T A G C A T G T A C G C A T C G T A G C A T

OTX1/MA0711.1/Jaspar

Match Rank:3
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CCAGTAATCT-
---TTAATCCG
A G T C A G T C C G T A A C T G A C G T C G T A C G T A A C G T A G T C A C G T A C G T
A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCAGTAATCT
TCATCAATCA
A G T C A G T C C G T A A C T G A C G T C G T A C G T A A C G T A G T C A C G T
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCAGTAATCT
CCWGGAATGY
A G T C A G T C C G T A A C T G A C G T C G T A C G T A A C G T A G T C A C G T
A T G C G A T C C G A T C T A G A C T G G C T A C G T A A G C T A C T G A G C T

GSC2/MA0891.1/Jaspar

Match Rank:6
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CCAGTAATCT--
--CCTAATCCGC
A G T C A G T C C G T A A C T G A C G T C G T A C G T A A C G T A G T C A C G T A C G T A C G T
A C G T A C G T T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCAGTAATCT
RGCCATYAATCA
A C G T A C G T A G T C A G T C C G T A A C T G A C G T C G T A C G T A A C G T A G T C A C G T
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:8
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CCAGTAATCT--
--NYTAATCCYB
A G T C A G T C C G T A A C T G A C G T C G T A C G T A A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

PB0185.1_Tcf1_2/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCAGTAATCT------
--NNTAATCCNGNCNN
A G T C A G T C C G T A A C T G A C G T C G T A C G T A A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G T A C G C A T T G C A G T C A G A C T G T A C A G T C T C A G A T C G C T A G A G T C T G C A C G T A

PITX1/MA0682.2/Jaspar

Match Rank:10
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CCAGTAATCT-
---CTAATCCC
A G T C A G T C C G T A A C T G A C G T C G T A C G T A A C G T A G T C A C G T A C G T
A C G T A C G T A C G T G A T C A C G T C G T A C G T A A C G T G T A C A G T C G T A C