Information for 4-CTGAGCATGGVG (Motif 4)

T G A C A C G T A T C G C G T A A C T G G T A C C G T A A G C T C T A G C A T G T A G C A T C G
Reverse Opposite:
A T G C A C T G G T A C A G T C C T G A A C G T A C T G A G T C C G A T A T G C C G T A A C T G
p-value:1e-4
log p-value:-1.126e+01
Information Content per bp:1.725
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif37.50%
Number of Background Sequences with motif610.3
Percentage of Background Sequences with motif0.62%
Average Position of motif in Targets90.7 +/- 64.9bp
Average Position of motif in Background103.7 +/- 83.1bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CTGAGCATGGVG
BTVATTWGCATA---
A C G T A C G T A C G T T G A C A C G T A T C G C G T A A C T G G T A C C G T A A G C T C T A G C A T G T A G C A T C G
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CTGAGCATGGVG
DCTCAGCAGG---
A C G T T G A C A C G T A T C G C G T A A C T G G T A C C G T A A G C T C T A G C A T G T A G C A T C G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CTGAGCATGGVG
WDNCTGGGCA-----
A C G T A C G T A C G T T G A C A C G T A T C G C G T A A C T G G T A C C G T A A G C T C T A G C A T G T A G C A T C G
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T A C G T A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CTGAGCATGGVG
CTCATTTGCATW---
A C G T A C G T A C G T T G A C A C G T A T C G C G T A A C T G G T A C C G T A A G C T C T A G C A T G T A G C A T C G
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A A C G T A C G T A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CTGAGCATGGVG
ATTTGCATA---
T G A C A C G T A T C G C G T A A C T G G T A C C G T A A G C T C T A G C A T G T A G C A T C G
G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A A C G T A C G T A C G T

POU5F1/MA1115.1/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTGAGCATGGVG
NATTTGCATNN--
A C G T T G A C A C G T A T C G C G T A A C T G G T A C C G T A A G C T C T A G C A T G T A G C A T C G
G T C A C G T A C G A T G A C T C G A T T C A G G A T C C T G A A G C T C G T A G C A T A C G T A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTGAGCATGGVG
ATTTGCATA---
T G A C A C G T A T C G C G T A A C T G G T A C C G T A A G C T C T A G C A T G T A G C A T C G
G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTGAGCATGGVG
CACAGCAGGGGG
T G A C A C G T A T C G C G T A A C T G G T A C C G T A A G C T C T A G C A T G T A G C A T C G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CTGAGCATGGVG
TGAGTCAGCA-----
A C G T A C G T A C G T T G A C A C G T A T C G C G T A A C T G G T A C C G T A A G C T C T A G C A T G T A G C A T C G
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CTGAGCATGGVG
NGTGGGCAT----
A C G T T G A C A C G T A T C G C G T A A C T G G T A C C G T A A G C T C T A G C A T G T A G C A T C G
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T