Information for 3-ACAAATCC (Motif 28)

C G T A A G T C C T G A C G T A G T C A A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G G T C A A C G T A C G T A G C T C T A G A C G T
p-value:1e-5
log p-value:-1.334e+01
Information Content per bp:1.897
Number of Target Sequences with motif61.0
Percentage of Target Sequences with motif5.71%
Number of Background Sequences with motif1423.6
Percentage of Background Sequences with motif2.97%
Average Position of motif in Targets107.3 +/- 55.2bp
Average Position of motif in Background99.3 +/- 56.1bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0138.1_Pitx2/Jaspar

Match Rank:1
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----ACAAATCC-----
GNNNATTAATCCCTNCN
A C G T A C G T A C G T A C G T C G T A A G T C C T G A C G T A G T C A A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T
C T A G G C T A G A C T C T A G C T G A G A C T C G A T C G T A C T G A A C G T G A T C A G T C A G T C A G C T G C A T G T A C G T C A

OTX2/MA0712.2/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-ACAAATCC---
NNCTAATCCCNN
A C G T C G T A A G T C C T G A C G T A G T C A A C G T A G T C A G T C A C G T A C G T A C G T
G C A T G C A T G A T C G C A T C G T A G T C A C A G T G A T C G A T C G A T C G C A T C G A T

PITX1/MA0682.2/Jaspar

Match Rank:3
Score:0.69
Offset:1
Orientation:forward strand
Alignment:ACAAATCC-
-CTAATCCC
C G T A A G T C C T G A C G T A G T C A A C G T A G T C A G T C A C G T
A C G T G A T C A C G T C G T A C G T A A C G T G T A C A G T C G T A C

Dmbx1/MA0883.1/Jaspar

Match Rank:4
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---ACAAATCC------
NNNATTAATCCGNTTNA
A C G T A C G T A C G T C G T A A G T C C T G A C G T A G T C A A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A

PH0025.1_Dmbx1/Jaspar

Match Rank:5
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---ACAAATCC------
NNNATTAATCCGNTTNA
A C G T A C G T A C G T C G T A A G T C C T G A C G T A G T C A A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A

PITX3/MA0714.1/Jaspar

Match Rank:6
Score:0.68
Offset:0
Orientation:forward strand
Alignment:ACAAATCC-
CTTAATCCC
C G T A A G T C C T G A C G T A G T C A A C G T A G T C A G T C A C G T
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C

PH0129.1_Otx1/Jaspar

Match Rank:7
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----ACAAATCC-----
NNNAATTAATCCCCNCN
A C G T A C G T A C G T A C G T C G T A A G T C C T G A C G T A G T C A A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T
T C G A C G A T C G T A C G T A C T G A G A C T C G A T C G T A C G T A A C G T G A T C A G T C A T G C A G T C G C A T G T A C G A C T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:8
Score:0.68
Offset:0
Orientation:forward strand
Alignment:ACAAATCC--
NYTAATCCYB
C G T A A G T C C T G A C G T A G T C A A C G T A G T C A G T C A C G T A C G T
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

PH0130.1_Otx2/Jaspar

Match Rank:9
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----ACAAATCC-----
GANNATTAATCCCTNNN
A C G T A C G T A C G T A C G T C G T A A G T C C T G A C G T A G T C A A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T
C A T G G T C A G A T C C T G A T C G A G A C T C G A T C G T A C G T A C A G T G A T C A G T C A G T C A G C T G C T A G A T C G T C A

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.67
Offset:2
Orientation:forward strand
Alignment:ACAAATCC--
--TAATCCCN
C G T A A G T C C T G A C G T A G T C A A C G T A G T C A G T C A C G T A C G T
A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G