Information for 18-GGTCTAACAC (Motif 23)

A C T G A C T G A C G T A T G C G C A T C T G A C G T A G T A C G T C A A G T C
Reverse Opposite:
A C T G A C G T C A T G G C A T A G C T C G T A A T C G C G T A A G T C A G T C
p-value:1e-4
log p-value:-1.137e+01
Information Content per bp:1.783
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.28%
Number of Background Sequences with motif125.7
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets82.8 +/- 52.3bp
Average Position of motif in Background95.2 +/- 60.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GGTCTAACAC--
TGTCTGDCACCT
A C T G A C T G A C G T A T G C G C A T C T G A C G T A G T A C G T C A A G T C A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GGTCTAACAC--
CTGTCTGTCACCT
A C G T A C T G A C T G A C G T A T G C G C A T C T G A C G T A G T A C G T C A A G T C A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

NR2C1/MA1535.1/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GGTCTAACAC
CGAGGTCAC----
A C G T A C G T A C G T A C T G A C T G A C G T A T G C G C A T C T G A C G T A G T A C G T C A A G T C
G T A C C T A G T C G A A C T G A C T G A C G T A T G C C T G A G A T C A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GGTCTAACAC
AGGTCA-----
A C G T A C T G A C T G A C G T A T G C G C A T C T G A C G T A G T A C G T C A A G T C
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T

NR2F1(var.3)/MA1538.1/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GGTCTAACAC---
AAGGTCANTGACCTT
A C G T A C G T A C T G A C T G A C G T A T G C G C A T C T G A C G T A G T A C G T C A A G T C A C G T A C G T A C G T
C T G A C T G A A C T G T C A G A C G T A G T C T C G A T G C A A G C T T C A G T G C A G A T C T G A C G A C T G A C T

NR4A2::RXRA/MA1147.1/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GGTCTAACAC---
GGGGTCAATGACCTN
A C G T A C G T A C T G A C T G A C G T A T G C G C A T C T G A C G T A G T A C G T C A A G T C A C G T A C G T A C G T
T C A G T C A G C A T G C A T G A C G T A T G C T C G A G C T A A G C T T C A G T C G A G T A C G T A C A G C T A G T C

NR2C2(var.2)/MA1536.1/Jaspar

Match Rank:7
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GGTCTAACAC
GAGGTCAT----
A C G T A C G T A C T G A C T G A C G T A T G C G C A T C T G A C G T A G T A C G T C A A G T C
T C A G T C G A A C T G A C T G A C G T A G T C C T G A G C A T A C G T A C G T A C G T A C G T

NR2F6(var.3)/MA1539.1/Jaspar

Match Rank:8
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GGTCTAACAC---
AAGGTCANTGACCTT
A C G T A C G T A C T G A C T G A C G T A T G C G C A T C T G A C G T A G T A C G T C A A G T C A C G T A C G T A C G T
C T G A T C G A C A T G C A T G A C G T A G T C T C G A T A C G G A C T T C A G T G C A G T A C G T A C A G C T G A C T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GGTCTAACAC
AGRGGTCA-----
A C G T A C G T A C G T A C T G A C T G A C G T A T G C G C A T C T G A C G T A G T A C G T C A A G T C
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T

EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer

Match Rank:10
Score:0.64
Offset:-7
Orientation:forward strand
Alignment:-------GGTCTAACAC
NRBCARRGGTCA-----
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C G T A T G C G C A T C T G A C G T A G T A C G T C A A G T C
T C A G T C A G A C G T G T A C G C T A T C A G C T G A A C T G A C T G A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T