Information for 18-GACATAAAGT (Motif 33)

A C T G C G T A A G T C C G T A A C G T C G T A C G T A C G T A A C T G C G A T
Reverse Opposite:
C G T A A G T C A C G T A C G T A C G T C G T A A C G T A C T G A C G T A G T C
p-value:1e-5
log p-value:-1.254e+01
Information Content per bp:1.963
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.92%
Number of Background Sequences with motif39.8
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets88.0 +/- 52.2bp
Average Position of motif in Background100.5 +/- 60.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GACATAAAGT
GTCATAAAAN
A C T G C G T A A G T C C G T A A C G T C G T A C G T A C G T A A C T G C G A T
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

CDX1/MA0878.2/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GACATAAAGT
GGCCATAAAAC
A C G T A C T G C G T A A G T C C G T A A C G T C G T A C G T A C G T A A C T G C G A T
C A T G C T A G A G T C T G A C C G T A A C G T C T G A C G T A C T G A G T C A A G T C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GACATAAAGT-
NGYCATAAAWCH
A C G T A C T G C G T A A G T C C G T A A C G T C G T A C G T A C G T A A C T G C G A T A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

CDX4/MA1473.1/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GACATAAAGT
GGCAATAAAAC
A C G T A C T G C G T A A G T C C G T A A C G T C G T A C G T A C G T A A C T G C G A T
C A T G T C A G A G T C T G C A C G T A A C G T C G T A C G T A G T C A G T C A A G T C

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GACATAAAGT
KGCCATAAAA-
A C G T A C T G C G T A A G T C C G T A A C G T C G T A C G T A C G T A A C T G C G A T
C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A A C G T

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GACATAAAGT
VGCCATAAAA-
A C G T A C T G C G T A A G T C C G T A A C G T C G T A C G T A C G T A A C T G C G A T
T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:7
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GACATAAAGT--
AAAGGTAATAAAATTT
A C G T A C G T A C G T A C G T A C T G C G T A A G T C C G T A A C G T C G T A C G T A C G T A A C T G C G A T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

PH0056.1_Hoxa9/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GACATAAAGT----
ACGGCCATAAAATTAAT
A C G T A C G T A C G T A C T G C G T A A G T C C G T A A C G T C G T A C G T A C G T A A C T G C G A T A C G T A C G T A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

HOXD9/MA0913.2/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GACATAAAGT
GCAATAAAAC
A C T G C G T A A G T C C G T A A C G T C G T A C G T A C G T A A C T G C G A T
T C A G A G T C G T C A T C G A C G A T G C T A C G T A C G T A G T C A G A T C

PH0065.1_Hoxc10/Jaspar

Match Rank:10
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GACATAAAGT--
TAAAGTCGTAAAACGT
A C G T A C G T A C G T A C G T A C T G C G T A A G T C C G T A A C G T C G T A C G T A C G T A A C T G C G A T A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T