Information for 1-AGGTAGGTGA (Motif 2)

C G T A A C T G C T A G C A G T C T G A A C T G C T A G A C G T A C T G C G T A
Reverse Opposite:
G C A T T G A C G T C A A G T C A G T C G A C T G T C A A G T C G T A C C G A T
p-value:1e-10
log p-value:-2.423e+01
Information Content per bp:1.723
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif3.42%
Number of Background Sequences with motif430.2
Percentage of Background Sequences with motif0.90%
Average Position of motif in Targets99.8 +/- 54.0bp
Average Position of motif in Background98.3 +/- 57.7bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AGGTAGGTGA
CAGGTAAGTAT
A C G T C G T A A C T G C T A G C A G T C T G A A C T G C T A G A C G T A C T G C G T A
T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

RORC/MA1151.1/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AGGTAGGTGA
ATAAGTAGGTCA
A C G T A C G T C G T A A C T G C T A G C A G T C T G A A C T G C T A G A C G T A C T G C G T A
C T G A C G A T G C T A C G T A A C T G A C G T T C G A C A T G C T A G A C G T A G T C C T G A

RORA(var.2)/MA0072.1/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---AGGTAGGTGA-
TATAAGTAGGTCAA
A C G T A C G T A C G T C G T A A C T G C T A G C A G T C T G A A C T G C T A G A C G T A C T G C G T A A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AGGTAGGTGA
AAYTAGGTCA
C G T A A C T G C T A G C A G T C T G A A C T G C T A G A C G T A C T G C G T A
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AGGTAGGTGA
AAYTAGGTCA
C G T A A C T G C T A G C A G T C T G A A C T G C T A G A C G T A C T G C G T A
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

ZKSCAN5/MA1652.1/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGGTAGGTGA---
GGAGGAGGTGAGAA
A C G T C G T A A C T G C T A G C A G T C T G A A C T G C T A G A C G T A C T G C G T A A C G T A C G T A C G T
C T A G T C A G C T G A C T A G T C A G T G C A C T A G C T A G A G C T T C A G T C G A C A T G T C G A T C G A

RORB/MA1150.1/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGGTAGGTGA-
AATTAGGTCAC
C G T A A C T G C T A G C A G T C T G A A C T G C T A G A C G T A C T G C G T A A C G T
C G T A G C T A C G A T A C G T C T G A A C T G C T A G A G C T G A T C C T G A G A T C

ASCL1(var.2)/MA1631.1/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AGGTAGGTGA--
NNGGCAGGTGCNN
A C G T C G T A A C T G C T A G C A G T C T G A A C T G C T A G A C G T A C T G C G T A A C G T A C G T
T A C G T A C G C T A G T A C G A T G C T C G A A T C G T A C G G A C T T A C G A T G C G C A T T A C G

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGGTAGGTGA-
WAABTAGGTCAV
A C G T C G T A A C T G C T A G C A G T C T G A A C T G C T A G A C G T A C T G C G T A A C G T
C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G

TCF12(var.2)/MA1648.1/Jaspar

Match Rank:10
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGGTAGGTGA-
NNGCAGGTGNN
C G T A A C T G C T A G C A G T C T G A A C T G C T A G A C G T A C T G C G T A A C G T
T A G C T C A G T C A G A G T C T C G A A T C G T A C G A G C T T C A G A T G C A T C G