Information for 11-CACATAGB (Motif 36)

A G T C C G T A G A T C T C G A C G A T C G T A T A C G A G T C
Reverse Opposite:
T C A G A T G C G C A T C G T A A G C T C T A G G C A T C T A G
p-value:1e-3
log p-value:-8.882e+00
Information Content per bp:1.711
Number of Target Sequences with motif57.0
Percentage of Target Sequences with motif5.34%
Number of Background Sequences with motif1522.3
Percentage of Background Sequences with motif3.17%
Average Position of motif in Targets102.7 +/- 56.0bp
Average Position of motif in Background97.6 +/- 60.9bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MXI1/MA1108.2/Jaspar

Match Rank:1
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--CACATAGB
GACACATGGC
A C G T A C G T A G T C C G T A G A T C T C G A C G A T C G T A T A C G A G T C
C T A G T C G A G A T C C T G A A G T C C T G A A G C T C T A G A C T G A T G C

NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CACATAGB
GTCACGTGGM
A C G T A C G T A G T C C G T A G A T C T C G A C G A T C G T A T A C G A G T C
T C A G C A G T A G T C C G T A A T G C T C A G G C A T A C T G A C T G T G A C

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CACATAGB-
GCACGTACCC
A C G T A G T C C G T A G A T C T C G A C G A T C G T A T A C G A G T C A C G T
C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

MYC/MA0147.3/Jaspar

Match Rank:4
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CACATAGB-
NNGCACGTGGNN
A C G T A C G T A C G T A G T C C G T A G A T C T C G A C G A T C G T A T A C G A G T C A C G T
T A C G T C A G T A C G T A G C T C G A A G T C T C A G G A C T A C T G A T C G A T G C A T G C

c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CACATAGB
NNCCACGTGG-
A C G T A C G T A C G T A G T C C G T A G A T C T C G A C G A T C G T A T A C G A G T C
T C A G T C A G T A G C A G T C C T G A A G T C C T A G A C G T A C T G A T C G A C G T

Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CACATAGB
GTCACGTGGT
A C G T A C G T A G T C C G T A G A T C T C G A C G A T C G T A T A C G A G T C
T C A G A C G T A G T C T C G A A G T C T C A G G C A T C T A G C T A G A G C T

Twist2/MA0633.1/Jaspar

Match Rank:7
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CACATAGB
NACATATGGN
A C G T A C G T A G T C C G T A G A T C T C G A C G A T C G T A T A C G A G T C
G T C A G T C A A G T C C G T A A G C T C T G A A C G T A C T G A C T G A G C T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:8
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CACATAGB
GCACGTAY-
A C G T A G T C C G T A G A T C T C G A C G A T C G T A T A C G A G T C
C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T

Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----CACATAGB
NNACCACGTGGT
A C G T A C G T A C G T A C G T A G T C C G T A G A T C T C G A C G A T C G T A T A C G A G T C
C G A T T C A G T C G A T G A C A G T C C G T A A G T C C T A G A C G T A C T G A C T G A G C T

USF2/MA0526.3/Jaspar

Match Rank:10
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----CACATAGB--
NNGTCACATGACNN
A C G T A C G T A C G T A C G T A G T C C G T A G A T C T C G A C G A T C G T A T A C G A G T C A C G T A C G T
C G T A C T A G T C A G A G C T T A G C G T C A A G T C T C G A C A G T T A C G T C G A A G T C G A T C G T C A