Information for 6-HTTDTCADTGCA (Motif 6)

G C T A A C G T A C G T C A G T C G A T G T A C C G T A C G T A A C G T A C T G A T G C G T C A
Reverse Opposite:
A C G T A T C G A G T C C G T A G A C T A C G T A C T G C G T A G C T A C G T A C G T A C A G T
p-value:1e-4
log p-value:-9.498e+00
Information Content per bp:1.748
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif37.50%
Number of Background Sequences with motif1088.7
Percentage of Background Sequences with motif1.12%
Average Position of motif in Targets112.2 +/- 68.0bp
Average Position of motif in Background103.5 +/- 79.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:HTTDTCADTGCA-
-NTTTCATTRCHD
G C T A A C G T A C G T C A G T C G A T G T A C C G T A C G T A A C G T A C T G A T G C G T C A A C G T
A C G T C G A T G C A T A C G T C G A T A G T C C G T A A C G T A C G T C T A G A G T C G A C T C A G T

ISL2/MA0914.1/Jaspar

Match Rank:2
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:HTTDTCADTGCA
---TTAAGTGC-
G C T A A C G T A C G T C A G T C G A T G T A C C G T A C G T A A C G T A C T G A T G C G T C A
A C G T A C G T A C G T G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C A C G T

Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:HTTDTCADTGCA
--TTTCATTRCC
G C T A A C G T A C G T C A G T C G A T G T A C C G T A C G T A A C G T A C T G A T G C G T C A
A C G T A C G T G A C T A G C T G A C T A T G C G C T A A C G T A C G T C T G A A T G C G A T C

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:HTTDTCADTGCA
--TTTNATTGCY
G C T A A C G T A C G T C A G T C G A T G T A C C G T A C G T A A C G T A C T G A T G C G T C A
A C G T A C G T A C G T A C G T C G A T A C G T G T C A A C G T C A G T C T A G A T G C G A T C

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:HTTDTCADTGCA
-YTGWCADY---
G C T A A C G T A C G T C A G T C G A T G T A C C G T A C G T A A C G T A C T G A T G C G T C A
A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C A C G T A C G T A C G T

SOX2/MA0143.4/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:HTTDTCADTGCA-
--AAACAATGGAA
G C T A A C G T A C G T C A G T C G A T G T A C C G T A C G T A A C G T A C T G A T G C G T C A A C G T
A C G T A C G T C G T A C G T A G C T A G A T C G C T A T C G A C G A T C T A G C T A G C G T A G C T A

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:HTTDTCADTGCA
--TTTCATKGCC
G C T A A C G T A C G T C A G T C G A T G T A C C G T A C G T A A C G T A C T G A T G C G T C A
A C G T A C G T G C A T A C G T C G A T A G T C G T C A A G C T C A G T C T A G A T G C G A T C

PH0114.1_Nkx2-5/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-HTTDTCADTGCA---
AAATTCAAGTGGNTTN
A C G T G C T A A C G T A C G T C A G T C G A T G T A C C G T A C G T A A C G T A C T G A T G C G T C A A C G T A C G T A C G T
C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A

HOXB13/MA0901.2/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-HTTDTCADTGCA-
NNATTTTATTGGNN
A C G T G C T A A C G T A C G T C A G T C G A T G T A C C G T A C G T A A C G T A C T G A T G C G T C A A C G T
C G T A C G T A C G T A C G A T C G A T C G A T G C A T T G C A G C A T C G A T C T A G C A T G G C A T G C A T

LHX2/MA0700.2/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:HTTDTCADTGCA-
--NNTAATTGGNN
G C T A A C G T A C G T C A G T C G A T G T A C C G T A C G T A A C G T A C T G A T G C G T C A A C G T
A C G T A C G T C G T A G C A T C G A T C G T A G C T A C G A T C G A T C T A G T A C G G C A T G C A T