Information for 8-AATGAAAGATGC (Motif 11)

C G T A C G T A A C G T A C T G C G T A C G T A C G T A A C T G C G T A A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C C G T A A C G T A G T C A C G T A C G T A C G T A G T C C G T A A C G T A C G T
p-value:1e-4
log p-value:-1.059e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets130.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:1
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---AATGAAAGATGC
GGYAATGAAA-----
A C G T A C G T A C G T C G T A C G T A A C G T A C T G C G T A C G T A C G T A A C T G C G T A A C G T A C T G A G T C
C T A G T A C G G A C T T G C A T G C A C G A T T A C G C T G A T C G A C T G A A C G T A C G T A C G T A C G T A C G T

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:2
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AATGAAAGATGC
GGCMATGAAA-----
A C G T A C G T A C G T C G T A C G T A A C G T A C T G C G T A C G T A C G T A A C T G C G T A A C G T A C T G A G T C
C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----AATGAAAGATGC
HDGYAATGAAAN----
A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C T G C G T A C G T A C G T A A C T G C G T A A C G T A C T G A G T C
G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:4
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------AATGAAAGATGC
ACTATGAATGAATGAT--
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C T G C G T A C G T A C G T A A C T G C G T A A C G T A C T G A G T C
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T A C G T A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AATGAAAGATGC--
GATATTGACAGCTGCGT
A C G T A C G T A C G T C G T A C G T A A C G T A C T G C G T A C G T A C G T A A C T G C G T A A C G T A C T G A G T C A C G T A C G T
C A G T C T G A A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C T A G A T G C A C G T T A C G T A G C A C T G C G A T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AATGAAAGATGC----
-ATGCATWATGCATRW
C G T A C G T A A C G T A C T G C G T A C G T A C G T A A C T G C G T A A C G T A C T G A G T C A C G T A C G T A C G T A C G T
A C G T C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AATGAAAGATGC-
-ATGATKGATGRC
C G T A C G T A A C G T A C T G C G T A C G T A C G T A A C T G C G T A A C G T A C T G A G T C A C G T
A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

POU4F3/MA0791.1/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AATGAAAGATGC--
CTCATTAATTATGCAT
A C G T A C G T C G T A C G T A A C G T A C T G C G T A C G T A C G T A A C T G C G T A A C G T A C T G A G T C A C G T A C G T
A G T C C A G T G T A C C T G A G A C T G C A T G C T A G C T A G C A T G C A T G C T A C G A T C A T G G A T C T C G A G A C T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AATGAAAGATGC----
-ATGAATWATTCATGA
C G T A C G T A A C G T A C T G C G T A C G T A C G T A A C T G C G T A A C G T A C T G A G T C A C G T A C G T A C G T A C G T
A C G T G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A

PH0141.1_Pknox2/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AATGAAAGATGC--
NNATTGACAGGTGCTT
A C G T A C G T C G T A C G T A A C G T A C T G C G T A C G T A C G T A A C T G C G T A A C G T A C T G A G T C A C G T A C G T
T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T