Information for 19-GCAATCATAC (Motif 38)

A C T G A G T C C G T A C G T A A C G T A G T C C G T A A C G T C G T A A G T C
Reverse Opposite:
A C T G A C G T C G T A A C G T A C T G C G T A A C G T A C G T A C T G A G T C
p-value:1e-2
log p-value:-6.891e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif7.69%
Number of Background Sequences with motif5.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets74.0 +/- 0.0bp
Average Position of motif in Background102.4 +/- 65.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Dux/MA0611.1/Jaspar

Match Rank:1
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GCAATCATAC
CCAATCAA--
A C T G A G T C C G T A C G T A A C G T A G T C C G T A A C G T C G T A A G T C
A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T

PH0037.1_Hdx/Jaspar

Match Rank:2
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----GCAATCATAC--
AAGGCGAAATCATCGCA
A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A A C G T A G T C C G T A A C G T C G T A A G T C A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

NFYC/MA1644.1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GCAATCATAC
AGCCAATCAGA-
A C G T A C G T A C T G A G T C C G T A C G T A A C G T A G T C C G T A A C G T C G T A A G T C
T C G A C T A G A G T C G T A C G C T A T C G A G A C T T A G C T C G A T A C G T G C A A C G T

PBX1/MA0070.1/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GCAATCATAC
CCATCAATCAAA-
A C G T A C G T A C G T A C T G A G T C C G T A C G T A A C G T A G T C C G T A A C G T C G T A A G T C
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A A C G T

NFYA/MA0060.3/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GCAATCATAC
AACCAATCAGA-
A C G T A C G T A C T G A G T C C G T A C G T A A C G T A G T C C G T A A C G T C G T A A G T C
T C G A C T G A A G T C G A T C G C T A T C G A G A C T T A G C T C G A T A C G T G C A A C G T

LHX1/MA1518.1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCAATCATAC
GCAATTAC--
A C T G A G T C C G T A C G T A A C G T A G T C C G T A A C G T C G T A A G T C
A T C G G A T C T G C A G C T A A C G T A G C T C G T A T A G C A C G T A C G T

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCAATCATAC
RGCAATNAAA-
A C G T A C T G A G T C C G T A C G T A A C G T A G T C C G T A A C G T C G T A A G T C
C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A A C G T

HOXD13/MA0909.2/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCAATCATAC
CCCAATAAAAC
A C G T A C T G A G T C C G T A C G T A A C G T A G T C C G T A A C G T C G T A A G T C
T A G C T A G C A G T C G T C A C T G A C G A T C G T A C T G A G T C A T G C A T G A C

HOXD9/MA0913.2/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCAATCATAC
GCAATAAAAC
A C T G A G T C C G T A C G T A A C G T A G T C C G T A A C G T C G T A A G T C
T C A G A G T C G T C A T C G A C G A T G C T A C G T A C G T A G T C A G A T C

PB0170.1_Sox17_2/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GCAATCATAC---
GACCACATTCATACAAT
A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A A C G T A G T C C G T A A C G T C G T A A G T C A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T