Information for 3-ATGTAACTCTGC (Motif 4)

C G T A A C G T A C T G A C G T C G T A C G T A A G T C A C G T A T G C A C G T A C T G A G T C
Reverse Opposite:
C T A G A G T C C G T A A T C G C G T A A C T G C G A T A C G T C G T A A G T C C G T A A C G T
p-value:1e-10
log p-value:-2.452e+01
Information Content per bp:1.912
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif2.31%
Number of Background Sequences with motif9.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets127.0 +/- 45.6bp
Average Position of motif in Background117.7 +/- 38.1bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

DMRTA2/MA1478.1/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-ATGTAACTCTGC
AATGTAACAATT-
A C G T C G T A A C G T A C T G A C G T C G T A C G T A A G T C A C G T A T G C A C G T A C T G A G T C
T G C A G C T A G C A T C T A G G A C T C G T A C G T A T G A C T C G A C G T A G C A T C G A T A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-ATGTAACTCTGC
AATGTATCAAT--
A C G T C G T A A C G T A C T G A C G T C G T A C G T A A G T C A C G T A T G C A C G T A C T G A G T C
G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T A C G T A C G T

PB0159.1_Rfx4_2/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-ATGTAACTCTGC--
NNNGTAACTANGNNA
A C G T C G T A A C G T A C T G A C G T C G T A C G T A A G T C A C G T A T G C A C G T A C T G A G T C A C G T A C G T
A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A

DMRTC2/MA1479.1/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-ATGTAACTCTGC
AATGTATCAATT-
A C G T C G T A A C G T A C T G A C G T C G T A C G T A A G T C A C G T A T G C A C G T A C T G A G T C
G T C A C G T A G C A T A T C G C A G T C G T A C A G T A T G C T G C A C G T A G C A T C G A T A C G T

ZNF652/MA1657.1/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:ATGTAACTCTGC-
-NTTAACTCTTTN
C G T A A C G T A C T G A C G T C G T A C G T A A G T C A C G T A T G C A C G T A C T G A G T C A C G T
A C G T C G A T A C G T C G A T T C G A G C T A G A T C G A C T T A G C G A C T A C G T A G C T T G A C

PH0082.1_Irx2/Jaspar

Match Rank:6
Score:0.58
Offset:-7
Orientation:forward strand
Alignment:-------ATGTAACTCTGC
TAAATACATGTAAAATT--
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A C G T A A G T C A C G T A T G C A C G T A C T G A G T C
C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T A C G T A C G T

PH0087.1_Irx6/Jaspar

Match Rank:7
Score:0.58
Offset:-7
Orientation:forward strand
Alignment:-------ATGTAACTCTGC
AAAATACATGTAAAAAT--
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A C G T A A G T C A C G T A T G C A C G T A C T G A G T C
G C T A G C T A G C T A C T G A C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G T C A C G T A C G T A G C T A C G A T A C G T A C G T

HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer

Match Rank:8
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---ATGTAACTCTGC
RTTATGYAAB-----
A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A C G T A A G T C A C G T A T G C A C G T A C T G A G T C
T C A G G A C T C A G T C T G A A G C T C T A G G A C T T G C A C T G A A G T C A C G T A C G T A C G T A C G T A C G T

HLF/MA0043.3/Jaspar

Match Rank:9
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----ATGTAACTCTGC
TTGTTATGCAACAA---
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A C G T A A G T C A C G T A T G C A C G T A C T G A G T C
C G A T C A G T T C A G G C A T C A G T C T G A A G C T C T A G G A T C G T C A C T G A A G T C G T C A C G T A A C G T A C G T A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-ATGTAACTCTGC
WATGCAAATGAG-
A C G T C G T A A C G T A C T G A C G T C G T A C G T A A G T C A C G T A T G C A C G T A C T G A G T C
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G A C G T