Information for 1-CWCGCGTC (Motif 16)

A G T C C G A T G T A C A C T G A G T C A C T G A C G T A G T C
Reverse Opposite:
A C T G C G T A G T A C T C A G G T A C A C T G G C T A C T A G
p-value:1e-9
log p-value:-2.073e+01
Information Content per bp:1.798
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.28%
Number of Background Sequences with motif59.5
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets112.2 +/- 46.3bp
Average Position of motif in Background106.2 +/- 49.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HES1/MA1099.2/Jaspar

Match Rank:1
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--CWCGCGTC
GNCACGTGCC
A C G T A C G T A G T C C G A T G T A C A C T G A G T C A C T G A C G T A G T C
T A C G T A G C G T A C C T G A A G T C C T A G G A C T C A T G G T A C T G A C

HEY2/MA0649.1/Jaspar

Match Rank:2
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--CWCGCGTC
GGCACGTGNC
A C G T A C G T A G T C C G A T G T A C A C T G A G T C A C T G A C G T A G T C
A T C G T C A G T A G C C T G A A T G C A C T G A G C T A C T G A G C T G A T C

PB0147.1_Max_2/Jaspar

Match Rank:3
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CWCGCGTC--
GTGCCACGCGACTG
A C G T A C G T A C G T A C G T A G T C C G A T G T A C A C T G A G T C A C T G A C G T A G T C A C G T A C G T
A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G

HES2/MA0616.2/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CWCGCGTC
GGCACGTGCC
A C G T A C G T A G T C C G A T G T A C A C T G A G T C A C T G A C G T A G T C
T A C G T C A G A G T C C T G A A G T C C T A G A G C T A C T G G T A C T A G C

HEY1/MA0823.1/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CWCGCGTC
GACACGTGCC
A C G T A C G T A G T C C G A T G T A C A C T G A G T C A C T G A C G T A G T C
T A C G T C G A A G T C T C G A A G T C A T C G A G C T C T A G A G T C T G A C

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CWCGCGTC
CACGCA--
A G T C C G A T G T A C A C T G A G T C A C T G A C G T A G T C
A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T

HES6/MA1493.1/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CWCGCGTC
GGCACGTGTT
A C G T A C G T A G T C C G A T G T A C A C T G A G T C A C T G A C G T A G T C
A C T G T A C G T A G C C G T A A G T C T A C G A C G T A C T G G C A T G A C T

Npas2/MA0626.1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CWCGCGTC
GGCACGTGTC
A C G T A C G T A G T C C G A T G T A C A C T G A G T C A C T G A C G T A G T C
C T A G T A C G A G T C C G T A G T A C C T A G A C G T C T A G A C G T G T A C

CLOCK/MA0819.1/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CWCGCGTC
AACACGTGTT
A C G T A C G T A G T C C G A T G T A C A C T G A G T C A C T G A C G T A G T C
C T G A T C G A T G A C T C G A A G T C C T A G A G C T A C T G A G C T G A C T

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CWCGCGTC
CACGTGDC
A G T C C G A T G T A C A C T G A G T C A C T G A C G T A G T C
G A T C C T G A A G T C C T A G G C A T C T A G C G T A G A T C