Information for 3-RTMGACGC (Motif 25)

T C G A A C G T T G C A A C T G C T G A A G T C A T C G A G T C
Reverse Opposite:
C T A G A T G C A C T G A G C T A G T C A C G T C G T A A G C T
p-value:1e-6
log p-value:-1.503e+01
Information Content per bp:1.809
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif3.63%
Number of Background Sequences with motif607.7
Percentage of Background Sequences with motif1.26%
Average Position of motif in Targets94.5 +/- 50.4bp
Average Position of motif in Background96.0 +/- 56.8bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZSCAN29/MA1602.1/Jaspar

Match Rank:1
Score:0.72
Offset:-5
Orientation:reverse strand
Alignment:-----RTMGACGC
NCNGTGTAGACG-
A C G T A C G T A C G T A C G T A C G T T C G A A C G T T G C A A C T G C T G A A G T C A T C G A G T C
A T G C G A T C A G T C T A C G A G C T C T A G C A G T C T G A A C T G T C G A A G T C T C A G A C G T

PB0179.1_Sp100_2/Jaspar

Match Rank:2
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------RTMGACGC-
NNTTTANNCGACGNA
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A C G T T G C A A C T G C T G A A G T C A T C G A G T C A C G T
T A G C G C A T C G A T C G A T C G A T G T C A T G C A C A T G A G T C A C T G C G T A A G T C C T A G T A C G T C G A

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:3
Score:0.64
Offset:2
Orientation:forward strand
Alignment:RTMGACGC
--TGACGT
T C G A A C G T T G C A A C T G C T G A A G T C A T C G A G T C
A C G T A C G T A C G T C A T G C G T A A G T C A C T G G A C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:RTMGACGC--
CCAGACRSVB
T C G A A C G T T G C A A C T G C T G A A G T C A T C G A G T C A C G T A C G T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

SMAD3/MA0795.1/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---RTMGACGC
TGTCTAGACG-
A C G T A C G T A C G T T C G A A C G T T G C A A C T G C T G A A G T C A T C G A G T C
C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G A C G T

Smad4/MA1153.1/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-RTMGACGC
TCTAGACA-
A C G T T C G A A C G T T G C A A C T G C T G A A G T C A T C G A G T C
A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T

SMAD5/MA1557.1/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---RTMGACGC
TGTCTAGACA-
A C G T A C G T A C G T T C G A A C G T T G C A A C T G C T G A A G T C A T C G A G T C
C G A T C T A G C A G T A T G C A C G T T G C A A C T G G T C A A G T C C T G A A C G T

Gmeb1/MA0615.1/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--RTMGACGC-------
GAGTGTACGTAAGATGG
A C G T A C G T T C G A A C G T T G C A A C T G C T G A A G T C A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A T C G G T C A A C T G A C G T C A G T C A G T T C G A A G T C C T A G A G C T G T C A G T A C T A C G C G T A A G C T T C A G A T C G

PB0027.1_Gmeb1_1/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--RTMGACGC-------
GAGTGTACGTAAGATGG
A C G T A C G T T C G A A C G T T G C A A C T G C T G A A G T C A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A T C G G T C A A C T G A C G T C A G T C A G T T C G A A G T C C T A G A G C T G T C A G T A C T A C G C G T A A G C T T C A G A T C G

PB0131.1_Gmeb1_2/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--RTMGACGC------
TGGGCGACGTCGTTAA
A C G T A C G T T C G A A C G T T G C A A C T G C T G A A G T C A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C A G T C A T G T C A G A C T G G T A C T C A G G C T A T A G C A C T G C A G T A G T C C A T G G A C T A G C T G T C A G C T A