Information for 7-GCAATGCAATTA (Motif 8)

A C T G A G T C C G T A C G T A A C G T A C T G A G T C C G T A C G T A A C G T A C G T C G T A
Reverse Opposite:
A C G T C G T A C G T A A C G T A C G T A C T G A G T C C G T A A C G T A C G T A C T G A G T C
p-value:1e-4
log p-value:-1.075e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets151.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PHOX2A/MA0713.1/Jaspar

Match Rank:1
Score:0.72
Offset:1
Orientation:forward strand
Alignment:GCAATGCAATTA
-TAATTTAATTA
A C T G A G T C C G T A C G T A A C G T A C T G A G T C C G T A C G T A A C G T A C G T C G T A
A C G T G C A T C T G A C T G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:2
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GCAATGCAATTA
NTAATBNAATTA
A C T G A G T C C G T A C G T A A C G T A C T G A G T C C G T A C G T A A C G T A C G T C G T A
G T A C G C A T C T G A C G T A G A C T A G C T C A T G T G C A C T G A A C G T G A C T C G T A

DLX5/MA1476.1/Jaspar

Match Rank:3
Score:0.70
Offset:5
Orientation:forward strand
Alignment:GCAATGCAATTA-
-----GCAATTAC
A C T G A G T C C G T A C G T A A C G T A C T G A G T C C G T A C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T A C G G A T C T G C A C G T A A C G T A C G T C G T A A G T C

LHX2/MA0700.2/Jaspar

Match Rank:4
Score:0.70
Offset:3
Orientation:forward strand
Alignment:GCAATGCAATTA--
---AACCAATTAAT
A C T G A G T C C G T A C G T A A C G T A C T G A G T C C G T A C G T A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T C G T A C G T A A T G C G A T C G C T A G C T A C G A T C G A T G C T A C G T A G C A T

Msx3/MA0709.1/Jaspar

Match Rank:5
Score:0.70
Offset:5
Orientation:forward strand
Alignment:GCAATGCAATTA-
-----CCAATTAA
A C T G A G T C C G T A C G T A A C G T A C T G A G T C C G T A C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T A G C G A T C T C G A T G C A A C G T G A C T C G T A T C G A

HOXB8/MA1502.1/Jaspar

Match Rank:6
Score:0.69
Offset:5
Orientation:forward strand
Alignment:GCAATGCAATTA-
-----GCAATTAC
A C T G A G T C C G T A C G T A A C G T A C T G A G T C C G T A C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C T G A G T C T G C A C G T A A C G T C A G T C G T A T G A C

Dlx2/MA0885.1/Jaspar

Match Rank:7
Score:0.69
Offset:5
Orientation:forward strand
Alignment:GCAATGCAATTA-
-----GCAATTAA
A C T G A G T C C G T A C G T A A C G T A C T G A G T C C G T A C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T A C G G A T C G T C A G T C A A C G T A C G T C G T A G C T A

HOXD8/MA0910.2/Jaspar

Match Rank:8
Score:0.69
Offset:5
Orientation:forward strand
Alignment:GCAATGCAATTA-
-----GCAATTAC
A C T G A G T C C G T A C G T A A C G T A C T G A G T C C G T A C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T C A G A G T C T G C A C G T A A C G T C A G T C G T A T G A C

MSX2/MA0708.1/Jaspar

Match Rank:9
Score:0.69
Offset:5
Orientation:forward strand
Alignment:GCAATGCAATTA-
-----CCAATTAA
A C T G A G T C C G T A C G T A A C G T A C T G A G T C C G T A C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A

MSX1/MA0666.1/Jaspar

Match Rank:10
Score:0.69
Offset:5
Orientation:forward strand
Alignment:GCAATGCAATTA-
-----CCAATTAG
A C T G A G T C C G T A C G T A A C G T A C T G A G T C C G T A C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G