Information for 3-GCTTGACTTKAC (Motif 3)

T C A G T G A C A C G T A C G T A C T G T C G A A T G C G A C T A C G T C A G T T G C A G T A C
Reverse Opposite:
A C T G A C G T G T C A T C G A C G T A A T C G A G C T G T A C G T C A C G T A A C T G A G T C
p-value:1e-7
log p-value:-1.634e+01
Information Content per bp:1.664
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif31.25%
Number of Background Sequences with motif395.0
Percentage of Background Sequences with motif0.72%
Average Position of motif in Targets126.6 +/- 39.8bp
Average Position of motif in Background95.1 +/- 69.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e1/MA0676.1/Jaspar

Match Rank:1
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:GCTTGACTTKAC
--TTGACTTTT-
T C A G T G A C A C G T A C G T A C T G T C G A A T G C G A C T A C G T C A G T T G C A G T A C
A C G T A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GCTTGACTTKAC
NNACTTGCCTT---
A C G T A C G T T C A G T G A C A C G T A C G T A C T G T C G A A T G C G A C T A C G T C A G T T G C A G T A C
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T

NFIC/MA0161.2/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCTTGACTTKAC
TACTTGGCAGA--
A C G T T C A G T G A C A C G T A C G T A C T G T C G A A T G C G A C T A C G T C A G T T G C A G T A C
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GCTTGACTTKAC
-NTTGGCANN--
T C A G T G A C A C G T A C G T A C T G T C G A A T G C G A C T A C G T C A G T T G C A G T A C
A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:5
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----GCTTGACTTKAC---
TTTMCGCTTSABTGAACACN
A C G T A C G T A C G T A C G T A C G T T C A G T G A C A C G T A C G T A C T G T C G A A T G C G A C T A C G T C A G T T G C A G T A C A C G T A C G T A C G T
A G C T C A G T G A C T T G A C G A T C T C A G A T G C G C A T A G C T T A C G C T G A A T C G G A C T C T A G T G C A T C G A A G T C G C T A A T G C T C G A

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GCTTGACTTKAC
NNTTGGCANN--
T C A G T G A C A C G T A C G T A C T G T C G A A T G C G A C T A C G T C A G T T G C A G T A C
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T

PH0171.1_Nkx2-1/Jaspar

Match Rank:7
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------GCTTGACTTKAC
TAAGCCACTTGAAATT--
A C G T A C G T A C G T A C G T A C G T A C G T T C A G T G A C A C G T A C G T A C T G T C G A A T G C G A C T A C G T C A G T T G C A G T A C
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T A C G T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GCTTGACTTKAC--
NNATTGGACTTTNGNN
A C G T A C G T T C A G T G A C A C G T A C G T A C T G T C G A A T G C G A C T A C G T C A G T T G C A G T A C A C G T A C G T
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C

MEIS3/MA0775.1/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GCTTGACTTKAC
--TTGACAGG--
T C A G T G A C A C G T A C G T A C T G T C G A A T G C G A C T A C G T C A G T T G C A G T A C
A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T

RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:10
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---GCTTGACTTKAC
TGACCTTGACCT---
A C G T A C G T A C G T T C A G T G A C A C G T A C G T A C T G T C G A A T G C G A C T A C G T C A G T T G C A G T A C
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T