Information for 7-GTCTCACCGA (Motif 11)

A C T G A C G T G T A C A C G T A T G C C T G A A T G C A G T C A C T G C G T A
Reverse Opposite:
A C G T A G T C A C T G A T C G A G C T A T C G C G T A A C T G C G T A G T A C
p-value:1e-7
log p-value:-1.753e+01
Information Content per bp:1.834
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif10.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets54.2 +/- 57.7bp
Average Position of motif in Background109.7 +/- 62.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0179.1_Sp100_2/Jaspar

Match Rank:1
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GTCTCACCGA----
NNTTTANNCGACGNA
A C G T A C T G A C G T G T A C A C G T A T G C C T G A A T G C A G T C A C T G C G T A A C G T A C G T A C G T A C G T
T A G C G C A T C G A T C G A T C G A T G T C A T G C A C A T G A G T C A C T G C G T A A G T C C T A G T A C G T C G A

PB0139.1_Irf5_2/Jaspar

Match Rank:2
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GTCTCACCGA-------
--TTGACCGAGAATTCC
A C T G A C G T G T A C A C G T A T G C C T G A A T G C A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

IRF6/MA1509.1/Jaspar

Match Rank:3
Score:0.53
Offset:5
Orientation:forward strand
Alignment:GTCTCACCGA----
-----ACCGAAACT
A C T G A C G T G T A C A C G T A T G C C T G A A T G C A G T C A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A G A T C A T G C C T A G C G T A C G T A C T G A A T G C G A C T

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:4
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GTCTCACCGA----
NNHYTGACCTAGWTT
A C G T A C T G A C G T G T A C A C G T A T G C C T G A A T G C A G T C A C T G C G T A A C G T A C G T A C G T A C G T
A C G T G A T C G A C T G A T C A C G T A C T G T C G A A G T C A G T C A G C T C T G A T C A G C G A T C G A T G C A T

PB0036.1_Irf6_1/Jaspar

Match Rank:5
Score:0.51
Offset:2
Orientation:forward strand
Alignment:GTCTCACCGA---------
--CTGATCGAAACCAAAGT
A C T G A C G T G T A C A C G T A T G C C T G A A T G C A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T A C C G A T C A T G C T G A G A C T G A T C C T A G T C G A C G T A C G T A T A G C A G T C T C G A T G C A C G T A C A T G C G A T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:6
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-GTCTCACCGA
ATTAACACCT-
A C G T A C T G A C G T G T A C A C G T A T G C C T G A A T G C A G T C A C T G C G T A
G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T A C G T

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:7
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:GTCTCACCGA----
--BTGACCTAVTTW
A C T G A C G T G T A C A C G T A T G C C T G A A T G C A G T C A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A G T C A C G T T C A G T C G A A G T C A G T C A G C T C T G A T C A G C G A T G C A T G C A T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:8
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:GTCTCACCGA---
---TGACCTARTT
A C T G A C G T G T A C A C G T A T G C C T G A A T G C A G T C A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:9
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:GTCTCACCGA---
---TGACCTARTT
A C T G A C G T G T A C A C G T A T G C C T G A A T G C A G T C A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GTCTCACCGA
CTGTCTGG----
A C G T A C G T A C T G A C G T G T A C A C G T A T G C C T G A A T G C A G T C A C T G C G T A
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T