Information for 18-CTCAGGAGGGTG (Motif 20)

A G T C A C G T A G T C C G T A A C T G A C T G C G T A A C T G A C T G A C T G A C G T A C T G
Reverse Opposite:
A G T C C G T A A G T C A G T C A G T C A C G T A G T C A G T C A C G T A C T G C G T A A C T G
p-value:1e-3
log p-value:-8.953e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets140.0 +/- 0.0bp
Average Position of motif in Background177.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CTCAGGAGGGTG
CACAGCAGGGGG
A G T C A C G T A G T C C G T A A C T G A C T G C G T A A C T G A C T G A C T G A C G T A C T G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic2/MA1629.1/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CTCAGGAGGGTG
CTCACAGCAGGGGG
A C G T A C G T A G T C A C G T A G T C C G T A A C T G A C T G C G T A A C T G A C T G A C T G A C G T A C T G
T G A C C A G T T G A C G C T A T A G C G T C A T A C G A G T C C T G A C A T G A T C G C T A G T C A G T C A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CTCAGGAGGGTG--
DCHCAGCAGGRGGCC
A C G T A G T C A C G T A G T C C G T A A C T G A C T G C G T A A C T G A C T G A C T G A C G T A C T G A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CTCAGGAGGGTG
CHCAGCRGGRGG
A G T C A C G T A G T C C G T A A C T G A C T G C G T A A C T G A C T G A C T G A C G T A C T G
T G A C G T C A A G T C G C T A C T A G A G T C C T G A C A T G A C T G C T A G T A C G T C A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTCAGGAGGGTG
DCTCAGCAGG---
A C G T A G T C A C G T A G T C C G T A A C T G A C T G C G T A A C T G A C T G A C T G A C G T A C T G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T

ZNF460/MA1596.1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTCAGGAGGGTG----
CTCGGGAGGCTGAGGC
A G T C A C G T A G T C C G T A A C T G A C T G C G T A A C T G A C T G A C T G A C G T A C T G A C G T A C G T A C G T A C G T
A G T C A G C T A G T C T C A G T A C G T A C G G T C A T A C G T C A G G A T C A C G T T A C G T C G A T A C G T A C G A G T C

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTCAGGAGGGTG
CACAGCAGGGG-
A G T C A C G T A G T C C G T A A C T G A C T G C G T A A C T G A C T G A C T G A C G T A C T G
T A G C T C G A A G T C T G C A T A C G A G T C T C G A A T C G A C T G T A C G T C A G A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CTCAGGAGGGTG--
CACAGCGGGGGGTC
A G T C A C G T A G T C C G T A A C T G A C T G C G T A A C T G A C T G A C T G A C G T A C T G A C G T A C G T
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

ZIC3/MA0697.1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTCAGGAGGGTG--
NCGCAGCGGGGGGTC
A C G T A G T C A C G T A G T C C G T A A C T G A C T G C G T A A C T G A C T G A C T G A C G T A C T G A C G T A C G T
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

MAZ/MA1522.1/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CTCAGGAGGGTG-
--GGGGAGGGGNN
A G T C A C G T A G T C C G T A A C T G A C T G C G T A A C T G A C T G A C T G A C G T A C T G A C G T
A C G T A C G T T C A G T C A G A T C G A C T G G T C A A T C G A T C G A T C G T A C G T A G C T A C G