Information for 1-GCATGGGAACAA (Motif 1)

A C T G A T G C C G T A A C G T A C T G A C T G A C T G C G T A C G T A A T G C C G T A C G T A
Reverse Opposite:
A C G T A C G T A T C G A C G T A C G T A G T C A G T C A G T C C G T A A C G T A T C G A G T C
p-value:1e-9
log p-value:-2.253e+01
Information Content per bp:1.936
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif18.75%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets83.3 +/- 47.0bp
Average Position of motif in Background130.1 +/- 21.9bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RBPJ/MA1116.1/Jaspar

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:GCATGGGAACAA
-CCTGGGAAAG-
A C T G A T G C C G T A A C G T A C T G A C T G A C T G C G T A C G T A A T G C C G T A C G T A
A C G T A G T C T A G C A G C T T C A G A C T G A C T G C G T A G T C A T G C A T A C G A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:2
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:GCATGGGAACAA
-CSTGGGAAAD-
A C T G A T G C C G T A A C G T A C T G A C T G A C T G C G T A C G T A A T G C C G T A C G T A
A C G T A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A A C G T

PB0072.1_Sox5_1/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GCATGGGAACAA------
--TTTAGAACAATAAAAT
A C T G A T G C C G T A A C G T A C T G A C T G A C T G C G T A C G T A A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T

PB0173.1_Sox21_2/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GCATGGGAACAA------
-NNNNNGAACAATTGANN
A C T G A T G C C G T A A C G T A C T G A C T G A C T G C G T A C G T A A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

PB0062.1_Sox12_1/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCATGGGAACAA---
-NTTNAGAACAATTA
A C T G A T G C C G T A A C G T A C T G A C T G A C T G C G T A C G T A A T G C C G T A C G T A A C G T A C G T A C G T
A C G T C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:6
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:GCATGGGAACAA---
-----GGAACAAAGR
A C T G A T G C C G T A A C G T A C T G A C T G A C T G C G T A C G T A A T G C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCATGGGAACAA
SCCTAGCAACAG
A C T G A T G C C G T A A C G T A C T G A C T G A C T G C G T A C G T A A T G C C G T A C G T A
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

RFX3/MA0798.2/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GCATGGGAACAA
TNCCATAGCAACNN
A C G T A C G T A C T G A T G C C G T A A C G T A C T G A C T G A C T G C G T A C G T A A T G C C G T A C G T A
G A C T C A T G A G T C G A T C G T C A A G C T C T G A C T A G G A T C C T G A T C G A G A T C T G A C T C A G

PB0071.1_Sox4_1/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GCATGGGAACAA-------
--AGAAGAACAAAGGACTA
A C T G A T G C C G T A A C G T A C T G A C T G A C T G C G T A C G T A A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GCATGGGAACAA
-AATGGAAAAT-
A C T G A T G C C G T A A C G T A C T G A C T G A C T G C G T A C G T A A T G C C G T A C G T A
A C G T T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T A C G T