Information for 1-AGGTCAAGCAGC (Motif 3)

C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A G T C C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T A C T G A G T C A C G T A C G T A C T G C G T A A G T C A G T C A C G T
p-value:1e-4
log p-value:-9.937e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets6.0 +/- 0.0bp
Average Position of motif in Background84.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AGGTCAAGCAGC
TRAGGTCA------
A C G T A C G T C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A G T C C G T A A C T G A G T C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer

Match Rank:2
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---AGGTCAAGCAGC
CAAAGKTCAA-----
A C G T A C G T A C G T C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A G T C C G T A A C T G A G T C
G A T C G T C A T C G A T C G A C T A G C A T G A G C T G T A C T C G A T C G A A C G T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AGGTCAAGCAGC
AGGTCA------
C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A G T C C G T A A C T G A G T C
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T

NR2F2/MA1111.1/Jaspar

Match Rank:4
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---AGGTCAAGCAGC
CAAAGGTCAAA----
A C G T A C G T A C G T C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A G T C C G T A A C T G A G T C
G A T C G T C A C G T A C T G A C A T G C T A G A C G T G A T C C T G A C T G A C T G A A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----AGGTCAAGCAGC
ATCAAGGTCA------
A C G T A C G T A C G T A C G T C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A G T C C G T A A C T G A G T C
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

NR2C2(var.2)/MA1536.1/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AGGTCAAGCAGC
GAGGTCAT-----
A C G T C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A G T C C G T A A C T G A G T C
T C A G T C G A A C T G A C T G A C G T A G T C C T G A G C A T A C G T A C G T A C G T A C G T A C G T

NR2C1/MA1535.1/Jaspar

Match Rank:7
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGGTCAAGCAGC
CGAGGTCAC-----
A C G T A C G T C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A G T C C G T A A C T G A G T C
G T A C C T A G T C G A A C T G A C T G A C G T A T G C C T G A G A T C A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGGTCAAGCAGC
AAGGTCAC-----
A C G T C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A G T C C G T A A C T G A G T C
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer

Match Rank:9
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------AGGTCAAGCAGC
GKBCARAGGTCA------
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A G T C C G T A A C T G A G T C
T A C G A C T G A G C T G T A C C G T A T C G A C T G A A C T G C A T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer

Match Rank:10
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------AGGTCAAGCAGC
NRBCARRGGTCA------
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A G T C C G T A A C T G A G T C
T C A G T C A G A C G T G T A C G C T A T C A G C T G A A C T G A C T G A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T