Information for 10-TTGATGGTGCTT (Motif 12)

A C G T A C G T A C T G C G T A A C G T A C T G A C T G A C G T A C T G A G T C A C G T A C G T
Reverse Opposite:
C G T A C G T A A C T G A G T C C G T A A G T C A G T C C G T A A C G T A G T C C G T A C G T A
p-value:1e-3
log p-value:-9.045e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets157.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:1
Score:0.64
Offset:-7
Orientation:forward strand
Alignment:-------TTGATGGTGCTT-
ACTYKNATTCGTGNTACTTC
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C G T A C T G A C T G A C G T A C T G A G T C A C G T A C G T A C G T
C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TTGATGGTGCTT----
-AGATGCTRCTRCCHT
A C G T A C G T A C T G C G T A A C G T A C T G A C T G A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T

PB0135.1_Hoxa3_2/Jaspar

Match Rank:3
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TTGATGGTGCTT
CCTTAATNGNTTTT
A C G T A C G T A C G T A C G T A C T G C G T A A C G T A C T G A C T G A C G T A C T G A G T C A C G T A C G T
A G T C A T G C G A C T C G A T C G T A C G T A A C G T T C A G A C T G G C A T C G A T G A C T C A G T A G C T

Dux/MA0611.1/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TTGATGGTGCTT
TTGATTGN----
A C G T A C G T A C T G C G T A A C G T A C T G A C T G A C G T A C T G A G T C A C G T A C G T
G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G A C G T A C G T A C G T A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:5
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------TTGATGGTGCTT
NNNNNATTGATGNGTGN-
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C G T A C T G A C T G A C G T A C T G A G T C A C G T A C G T
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A A C G T

PB0144.1_Lef1_2/Jaspar

Match Rank:6
Score:0.55
Offset:-7
Orientation:reverse strand
Alignment:-------TTGATGGTGCTT
NNANTGATTGATNTTN---
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C G T A C T G A C T G A C G T A C T G A G T C A C G T A C G T
G C A T C G T A T C G A C A T G G A C T C T A G G T C A G A C T C G A T T A C G C G T A C G A T A T G C A G C T G C A T A T G C A C G T A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TTGATGGTGCTT
TTTAAT-------
A C G T A C G T A C G T A C T G C G T A A C G T A C T G A C T G A C G T A C T G A G T C A C G T A C G T
G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS1(var.2)/MA1639.1/Jaspar

Match Rank:8
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----TTGATGGTGCTT
NNTGATTGATGNN----
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C G T A C T G A C T G A C G T A C T G A G T C A C G T A C G T
C G T A C G T A C G A T C A T G C G T A C G A T C A G T C A T G G T C A G A C T C T A G C T G A G A T C A C G T A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TTGATGGTGCTT
GTTAATGGCC---
A C G T A C G T A C G T A C T G C G T A A C G T A C T G A C T G A C G T A C T G A G T C A C G T A C G T
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T A C G T

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TTGATGGTGCTT
TTTNATTGCY---
A C G T A C G T A C G T A C T G C G T A A C G T A C T G A C T G A C G T A C T G A G T C A C G T A C G T
A C G T A C G T C G A T A C G T G T C A A C G T C A G T C T A G A T G C G A T C A C G T A C G T A C G T