Information for 17-GCCATACAAT (Motif 33)

A C T G A G T C A G T C C G T A A C G T C G T A A G T C C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T A C T G A C G T C G T A A C G T A C T G A C T G A G T C
p-value:1e-3
log p-value:-7.444e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif8.33%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets191.0 +/- 0.0bp
Average Position of motif in Background69.1 +/- 20.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX1/MA0878.2/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GCCATACAAT
GGCCATAAAAC
A C G T A C T G A G T C A G T C C G T A A C G T C G T A A G T C C G T A C G T A A C G T
C A T G C T A G A G T C T G A C C G T A A C G T C T G A C G T A C T G A G T C A A G T C

PH0064.1_Hoxb9/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---GCCATACAAT---
AGAGCCATAAAATTCG
A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C G T C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

CDX4/MA1473.1/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GCCATACAAT
GGCAATAAAAC
A C G T A C T G A G T C A G T C C G T A A C G T C G T A A G T C C G T A C G T A A C G T
C A T G T C A G A G T C T G C A C G T A A C G T C G T A C G T A G T C A G T C A A G T C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GCCATACAAT
GTCATAAAAN
A C T G A G T C A G T C C G T A A C G T C G T A A G T C C G T A C G T A A C G T
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:5
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---GCCATACAAT--
ATTTGCATACAATGG
A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C G T C G T A A G T C C G T A C G T A A C G T A C G T A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

PH0056.1_Hoxa9/Jaspar

Match Rank:6
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---GCCATACAAT----
ACGGCCATAAAATTAAT
A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C G T C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

HOXD9/MA0913.2/Jaspar

Match Rank:7
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCCATACAAT
GCAATAAAAC
A C T G A G T C A G T C C G T A A C G T C G T A A G T C C G T A C G T A A C G T
T C A G A G T C G T C A T C G A C G A T G C T A C G T A C G T A G T C A G A T C

PH0013.1_Cdx2/Jaspar

Match Rank:8
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GCCATACAAT--
AAAGGTAATAAAATTT
A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C G T C G T A A G T C C G T A C G T A A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

SOX2/MA0143.4/Jaspar

Match Rank:9
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GCCATACAAT----
---AAACAATGGAA
A C T G A G T C A G T C C G T A A C G T C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A C G T A G C T A G A T C G C T A T C G A C G A T C T A G C T A G C G T A G C T A

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GCCATACAAT
KGCCATAAAA-
A C G T A C T G A G T C A G T C C G T A A C G T C G T A A G T C C G T A C G T A A C G T
C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A A C G T