Information for 9-ACTTGACC (Motif 29)

C G T A A G T C A C G T A C G T A C T G C G T A G T A C A G T C
Reverse Opposite:
A C T G A C T G A C G T A G T C C G T A C G T A A C T G A C G T
p-value:1e-5
log p-value:-1.178e+01
Information Content per bp:1.958
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.43%
Number of Background Sequences with motif181.1
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets98.8 +/- 53.9bp
Average Position of motif in Background98.2 +/- 53.0bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---ACTTGACC-
TGACCTTGACCT
A C G T A C G T A C G T C G T A A G T C A C G T A C G T A C T G C G T A G T A C A G T C A C G T
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

NKX2-8/MA0673.1/Jaspar

Match Rank:2
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--ACTTGACC
CCACTTGAA-
A C G T A C G T C G T A A G T C A C G T A C G T A C T G C G T A G T A C A G T C
T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:3
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--ACTTGACC-------
NNANTTGACCCCTNNNN
A C G T A C G T C G T A A G T C A C G T A C G T A C T G C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G T A C C G T A T C G A A C G T A C G T C T A G G T C A G T A C G T A C A G T C A G T C C A G T A C T G T C A G G T C A T A C G

NR6A1/MA1541.1/Jaspar

Match Rank:4
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----ACTTGACC-----
NTGACCTTGAACTTGAN
A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C G T A C T G C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T
G C A T G A C T T C A G T G C A G T A C G T A C C A G T G C A T T C A G T C G A G T C A G T A C A C G T G A C T T A C G T C G A T G A C

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:ACTTGACC-
---TGACCT
C G T A A G T C A C G T A C G T A C T G C G T A G T A C A G T C A C G T
A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

PB0157.1_Rara_2/Jaspar

Match Rank:6
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-ACTTGACC-------
NNCNTGACCCCGCTCT
A C G T C G T A A G T C A C G T A C G T A C T G C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

NKX2-3/MA0672.1/Jaspar

Match Rank:7
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---ACTTGACC
ACCACTTGAA-
A C G T A C G T A C G T C G T A A G T C A C G T A C G T A C T G C G T A G T A C A G T C
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T

RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer

Match Rank:8
Score:0.73
Offset:2
Orientation:forward strand
Alignment:ACTTGACC----
--TTGAMCTTTG
C G T A A G T C A C G T A C G T A C T G C G T A G T A C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A G C T A G C T C A T G C T G A G T A C A G T C A G C T A G C T C A G T C T A G

NR2C1/MA1535.1/Jaspar

Match Rank:9
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:ACTTGACC---
--NTGACCTCN
C G T A A G T C A C G T A C G T A C T G C G T A G T A C A G T C A C G T A C G T A C G T
A C G T A C G T C T A G A G C T A T C G G T C A A G T C G T A C A G C T G A T C C A T G

NR2C2(var.2)/MA1536.1/Jaspar

Match Rank:10
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:ACTTGACC--
--NTGACCTN
C G T A A G T C A C G T A C G T A C T G C G T A G T A C A G T C A C G T A C G T
A C G T A C G T C G T A A G C T T C A G G T C A G T A C T G A C A G C T A G T C