Information for 22-ATCACCTATATA (Motif 34)

C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A G C T G T C A A C G T C G T A
Reverse Opposite:
A C G T C G T A A C G T C T G A A C G T C G T A A C T G A C T G A C G T A C T G C G T A A C G T
p-value:1e-4
log p-value:-1.071e+01
Information Content per bp:1.950
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.36%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets91.4 +/- 63.5bp
Average Position of motif in Background107.5 +/- 73.9bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)2.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORC/MA1151.1/Jaspar

Match Rank:1
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:ATCACCTATATA-
-TGACCTANTTAN
C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A G C T G T C A A C G T C G T A A C G T
A C G T G A C T T C A G T G C A G A T C G T A C A G C T T G C A T A G C G C A T C G A T G C T A G A C T

RORB/MA1150.1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:ATCACCTATATA
NTGACCTAATT-
C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A G C T G T C A A C G T C G T A
C T A G G A C T C T A G T C G A G A T C T G A C G A C T T G C A G C T A C G A T G C A T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:ATCACCTATATA--
TTGACCTANTTATN
C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A G C T G T C A A C G T C G T A A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:ATCACCTATATA
-TGACCTARTT-
C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A G C T G T C A A C G T C G T A
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:ATCACCTATATA
-TGACCTARTT-
C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A G C T G T C A A C G T C G T A
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T

RORA/MA0071.1/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:ATCACCTATATA
-TGACCTTGAT-
C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A G C T G T C A A C G T C G T A
A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---ATCACCTATATA
NNHYTGACCTAGWTT
A C G T A C G T A C G T C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A G C T G T C A A C G T C G T A
A C G T G A T C G A C T G A T C A C G T A C T G T C G A A G T C A G T C A G C T C T G A T C A G C G A T C G A T G C A T

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ATCACCTATATA
BTGACCTAVTTW
C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A G C T G T C A A C G T C G T A
A G T C A C G T T C A G T C G A A G T C A G T C A G C T C T G A T C A G C G A T G C A T G C A T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-ATCACCTATATA
TGACACCT-----
A C G T C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A G C T G T C A A C G T C G T A
G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T

FIGLA/MA0820.1/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:ATCACCTATATA
ACCACCTGTT--
C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A G C T G T C A A C G T C G T A
G C T A G T A C A G T C G T C A A T G C T A G C C G A T C A T G A C G T C G A T A C G T A C G T