Information for 18-CATCCATTGC (Motif 33)

A G T C C G T A A C G T A G T C A G T C C G T A A C G T A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C C G T A C G T A A C G T A C T G A C T G C G T A A C G T A C T G
p-value:1e-2
log p-value:-6.762e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif53.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets22.0 +/- 0.0bp
Average Position of motif in Background118.9 +/- 128.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX2/MA0143.4/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CATCCATTGC--
-NNCCATTGTNN
A G T C C G T A A C G T A G T C A G T C C G T A A C G T A C G T A C T G A G T C A C G T A C G T
A C G T C G A T G C A T G A T C G A T C G C T A A G C T C G A T C T A G C G A T G C A T G C A T

PB0028.1_Hbp1_1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CATCCATTGC----
NNCATTCATTCATNNN
A C G T A C G T A G T C C G T A A C G T A G T C A G T C C G T A A C G T A C G T A C T G A G T C A C G T A C G T A C G T A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

SOX13/MA1120.1/Jaspar

Match Rank:3
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CATCCATTGC--
-NNCCATTGTNN
A G T C C G T A A C G T A G T C A G T C C G T A A C G T A C G T A C T G A G T C A C G T A C G T
A C G T C G A T A C T G A G T C G A T C C G T A G A C T C G A T T C A G G A C T A G C T G A C T

Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CATCCATTGC-
-TTTCATTRCC
A G T C C G T A A C G T A G T C A G T C C G T A A C G T A C G T A C T G A G T C A C G T
A C G T G A C T A G C T G A C T A T G C G C T A A C G T A C G T C T G A A T G C G A T C

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CATCCATTGC---
---CCATTGTTYB
A G T C C G T A A C G T A G T C A G T C C G T A A C G T A C G T A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer

Match Rank:6
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CATCCATTGC-----
---CCATTGTTYYBB
A G T C C G T A A C G T A G T C A G T C C G T A A C G T A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C G A T C C G T A A C G T A C G T A C T G A C G T A G C T A G C T A G T C A T C G A C T G

SOX9/MA0077.1/Jaspar

Match Rank:7
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CATCCATTGC--
---CCATTGTTC
A G T C C G T A A C G T A G T C A G T C C G T A A C G T A C G T A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CATCCATTGC--
--NCCATTGTTC
A G T C C G T A A C G T A G T C A G T C C G T A A C G T A C G T A C T G A G T C A C G T A C G T
A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

Hmx1/MA0896.1/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CATCCATTGC----
ANNCATTAATTGCTNGN
A C G T A C G T A C G T A G T C C G T A A C G T A G T C A G T C C G T A A C G T A C G T A C T G A G T C A C G T A C G T A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CATCCATTGC----
ANNCATTAATTGCTNGN
A C G T A C G T A C G T A G T C C G T A A C G T A G T C A G T C C G T A A C G T A C G T A C T G A G T C A C G T A C G T A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T