Information for 4-TAGACACGCT (Motif 15)

A C G T C G T A A C T G C G T A A G T C C G T A A G T C A C T G A G T C A C G T
Reverse Opposite:
C G T A A C T G A G T C A C T G A C G T A C T G A C G T A G T C A C G T C G T A
p-value:1e-3
log p-value:-7.785e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.00%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets5.0 +/- 0.0bp
Average Position of motif in Background66.3 +/- 20.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:1
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:TAGACACGCT
----CACGCA
A C G T C G T A A C T G C G T A A G T C C G T A A G T C A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A

PAX5/MA0014.3/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TAGACACGCT-
NNGGTCACGCTC
A C G T A C G T C G T A A C T G C G T A A G T C C G T A A G T C A C T G A G T C A C G T A C G T
T C A G C A T G T C A G A T C G G A C T A T G C C G T A A G T C T C A G A T G C G A C T A G T C

Smad4/MA1153.1/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TAGACACGCT
TCTAGACA----
A C G T A C G T A C G T C G T A A C T G C G T A A G T C C G T A A G T C A C T G A G T C A C G T
A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T A C G T A C G T A C G T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:4
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TAGACACGCT
NNAATTAGTCACGGT
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A G T C C G T A A G T C A C T G A G T C A C G T
A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TAGACACGCT-
-TBGCACGCAA
A C G T C G T A A C T G C G T A A G T C C G T A A G T C A C T G A G T C A C G T A C G T
A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TAGACACGCT
CCAGACRSVB-
A C G T A C G T C G T A A C T G C G T A A G T C C G T A A G T C A C T G A G T C A C G T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TAGACACGCT----
NNGGCCACGCCTTTN
A C G T A C G T C G T A A C T G C G T A A G T C C G T A A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G

SMAD3/MA0795.1/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TAGACACGCT
CGTCTAGACA----
A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A G T C C G T A A G T C A C T G A G T C A C G T
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TAGACACGCT
BCAGACWA---
A C G T A C G T C G T A A C T G C G T A A G T C C G T A A G T C A C T G A G T C A C G T
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:10
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----TAGACACGCT--
CTACTTGGATACGGAAT
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A G T C C G T A A G T C A C T G A G T C A C G T A C G T A C G T
A T G C A C G T T C G A A T G C C A G T G A C T T C A G A C T G C G T A A C G T C G T A G A T C T A C G T A C G C G T A C G T A G C A T