Information for 1-GAGGGATGCCCR (Motif 1)

A C T G C G T A A C T G A C T G C T A G C G T A A C G T A C T G A G T C A G T C A G T C C T A G
Reverse Opposite:
A G T C A C T G A C T G A C T G A G T C C G T A A C G T A G T C A G T C A G T C A C G T A G T C
p-value:1e-20
log p-value:-4.623e+01
Information Content per bp:1.945
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets100.9 +/- 46.6bp
Average Position of motif in Background91.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIC2/MA0738.1/Jaspar

Match Rank:1
Score:0.69
Offset:5
Orientation:forward strand
Alignment:GAGGGATGCCCR--
-----ATGCCCACC
A C T G C G T A A C T G A C T G C T A G C G T A A C G T A C T G A G T C A G T C A G T C C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

PB0133.1_Hic1_2/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GAGGGATGCCCR-----
-GGGTGTGCCCAAAAGG
A C T G C G T A A C T G A C T G C T A G C G T A A C G T A C T G A G T C A G T C A G T C C T A G A C G T A C G T A C G T A C G T A C G T
A C G T C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GAGGGATGCCCR
GGGGGAATCCCC-
A C G T A C T G C G T A A C T G A C T G C T A G C G T A A C G T A C T G A G T C A G T C A G T C C T A G
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C A C G T

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GAGGGATGCCCR
CCWGGAATGY---
A C G T A C T G C G T A A C T G A C T G C T A G C G T A A C G T A C T G A G T C A G T C A G T C C T A G
T A G C T A G C G C A T C A T G A C T G G C T A C G T A A C G T A C T G G A T C A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:5
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GAGGGATGCCCR
--GGAAANCCCC
A C T G C G T A A C T G A C T G C T A G C G T A A C G T A C T G A G T C A G T C A G T C C T A G
A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

TEAD3/MA0808.1/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GAGGGATGCCCR
-TGGAATGT---
A C T G C G T A A C T G A C T G C T A G C G T A A C G T A C T G A G T C A G T C A G T C C T A G
A C G T G C A T C T A G A C T G G C T A C G T A A C G T A C T G G A C T A C G T A C G T A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GAGGGATGCCCR
AGGGGAATCCCCT
A C G T A C T G C G T A A C T G A C T G C T A G C G T A A C G T A C T G A G T C A G T C A G T C C T A G
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GAGGGATGCCCR
AGGGGAATCCCCT
A C G T A C T G C G T A A C T G A C T G C T A G C G T A A C G T A C T G A G T C A G T C A G T C C T A G
T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

MF0003.1_REL_class/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GAGGGATGCCCR
--GGAAATCCCC
A C T G C G T A A C T G A C T G C T A G C G T A A C G T A C T G A G T C A G T C A G T C C T A G
A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GAGGGATGCCCR
ATGATKGATGRC--
A C G T A C G T A C T G C G T A A C T G A C T G C T A G C G T A A C G T A C T G A G T C A G T C A G T C C T A G
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T A C G T