Information for 20-TTGTCACATTTG (Motif 22)

A C G T A C G T A C T G A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C T G
Reverse Opposite:
A G T C C G T A C G T A C G T A A C G T A C T G A C G T A C T G C G T A A G T C C G T A C G T A
p-value:1e-3
log p-value:-9.177e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets27.0 +/- 0.0bp
Average Position of motif in Background116.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

DMRTA2/MA1478.1/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TTGTCACATTTG
AATTGTTACATT--
A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C T G
G C T A C G T A G C A T A G C T A C T G G C A T G C A T C T G A A G T C C G T A C G A T A C G T A C G T A C G T

DMRTC2/MA1479.1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TTGTCACATTTG
AATTGATACATT--
A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C T G
G C T A C G T A G C A T A C G T A T C G G T C A G C A T G T C A A T G C C G T A G C A T C A G T A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TTGTCACATTTG
-TGTCANYT---
A C G T A C G T A C T G A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C T G
A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T A C G T A C G T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TTGTCACATTTG
KTTCACACCT---
A C G T A C G T A C G T A C T G A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C T G
C A G T C A G T A C G T T A G C G C T A A G T C C T G A G T A C G A T C G C A T A C G T A C G T A C G T

Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TTGTCACATTTG
TTVACACCTH--
A C G T A C G T A C T G A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C T G
A C G T G A C T T C A G C T G A G T A C C T G A T A G C A G T C G A C T G A T C A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TTGTCACATTTG
NTGTCAN-----
A C G T A C G T A C T G A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C T G
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T

Twist2/MA0633.1/Jaspar

Match Rank:7
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:TTGTCACATTTG--
----NACATATGGN
A C G T A C G T A C T G A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T G T C A G T C A A G T C C G T A A G C T C T G A A C G T A C T G A C T G A G C T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TTGTCACATTTG
TTMACACCTT--
A C G T A C G T A C T G A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C T G
C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T A C G T A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TTGTCACATTTG
NTTGATACATT--
A C G T A C G T A C G T A C T G A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C T G
C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TTGTCACATTTG
CCTGTCAA-----
A C G T A C G T A C G T A C T G A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C T G
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T A C G T