Information for 4-AAGAGGAGDATG (Motif 4)

G T C A C T G A A C T G G T C A A C T G A C T G C G T A A C T G C A T G C G T A A C G T A C T G
Reverse Opposite:
A G T C C G T A A C G T G A T C T G A C A C G T G T A C G T A C A C G T G T A C A G C T A C G T
p-value:1e-4
log p-value:-1.058e+01
Information Content per bp:1.756
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif30.00%
Number of Background Sequences with motif456.3
Percentage of Background Sequences with motif0.60%
Average Position of motif in Targets135.0 +/- 21.9bp
Average Position of motif in Background99.8 +/- 79.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL002.1_INR/Jaspar

Match Rank:1
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:AAGAGGAGDATG-
-----NNNANTGA
G T C A C T G A A C T G G T C A A C T G A C T G C G T A A C T G C A T G C G T A A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A

SOX13/MA1120.1/Jaspar

Match Rank:2
Score:0.56
Offset:4
Orientation:forward strand
Alignment:AAGAGGAGDATG---
----AAACAATGGCA
G T C A C T G A A C T G G T C A A C T G A C T G C G T A A C T G C A T G C G T A A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A T C G A C T G A A G T C G C T A C T G A G C A T C T A G T C A G T G A C G C T A

SOX2/MA0143.4/Jaspar

Match Rank:3
Score:0.56
Offset:4
Orientation:forward strand
Alignment:AAGAGGAGDATG---
----AAACAATGGAA
G T C A C T G A A C T G G T C A A C T G A C T G C G T A A C T G C A T G C G T A A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C G T A G C T A G A T C G C T A T C G A C G A T C T A G C T A G C G T A G C T A

PH0126.1_Obox6/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AAGAGGAGDATG-
AAAAACGGATTATTG
A C G T A C G T G T C A C T G A A C T G G T C A A C T G A C T G C G T A A C T G C A T G C G T A A C G T A C T G A C G T
G T C A G C T A C T G A G C T A C T A G T A G C C T A G A C T G G T C A A C G T G A C T C G T A C G A T G A C T A T C G

PB0181.1_Spdef_2/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AAGAGGAGDATG-----
-CTACTAGGATGTNNTN
G T C A C T G A A C T G G T C A A C T G A C T G C G T A A C T G C A T G C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A G T C G C A T C G T A T G A C C G A T T C G A T A C G C A T G C G T A G A C T C T A G G A C T C G A T T C G A G C A T G A T C

PB0124.1_Gabpa_2/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---AAGAGGAGDATG-
NNNNGGGGGAAGANGG
A C G T A C G T A C G T G T C A C T G A A C T G G T C A A C T G A C T G C G T A A C T G C A T G C G T A A C G T A C T G A C G T
C T A G A C G T A T C G T C G A C T A G C A T G T A C G C T A G C T A G C T G A C G T A C T A G T G C A G A T C C T A G A C T G

Crx/MA0467.1/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AAGAGGAGDATG
AAGAGGATTAG-
G T C A C T G A A C T G G T C A A C T G A C T G C G T A A C T G C A T G C G T A A C G T A C T G
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T

Sox17/MA0078.1/Jaspar

Match Rank:8
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:AAGAGGAGDATG--
-----GACAATGNN
G T C A C T G A A C T G G T C A A C T G A C T G C G T A A C T G C A T G C G T A A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

PRDM1/MA0508.3/Jaspar

Match Rank:9
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:AAGAGGAGDATG--
---NAGAGAAAGNA
G T C A C T G A A C T G G T C A A C T G A C T G C G T A A C T G C A T G C G T A A C G T A C T G A C G T A C G T
A C G T A C G T A C G T C T G A C T G A C A T G G C T A C A T G G C T A C G T A G C T A C A T G C G T A C T G A

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:AAGAGGAGDATG-
---AAAACAATGG
G T C A C T G A A C T G G T C A A C T G A C T G C G T A A C T G C A T G C G T A A C G T A C T G A C G T
A C G T A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G