Information for 7-ATATAGGTTAGT (Motif 6)

C T G A A C G T C G T A A C G T C G T A A C T G A C T G C G A T C G A T C G T A A C T G A C G T
Reverse Opposite:
C G T A A G T C C G A T C G T A C G T A A G T C A G T C A C G T C G T A C G A T C G T A A G C T
p-value:1e-10
log p-value:-2.529e+01
Information Content per bp:1.859
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif6.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets81.4 +/- 42.4bp
Average Position of motif in Background105.1 +/- 66.8bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.65
Offset:3
Orientation:forward strand
Alignment:ATATAGGTTAGT--
---CAGGTAAGTAT
C T G A A C G T C G T A A C G T C G T A A C T G A C T G C G A T C G A T C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

RORC/MA1151.1/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--ATATAGGTTAGT
ATAAGTAGGTCA--
A C G T A C G T C T G A A C G T C G T A A C G T C G T A A C T G A C T G C G A T C G A T C G T A A C T G A C G T
C T G A C G A T G C T A C G T A A C T G A C G T T C G A C A T G C T A G A C G T A G T C C T G A A C G T A C G T

RORB/MA1150.1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:ATATAGGTTAGT
AATTAGGTCAC-
C T G A A C G T C G T A A C G T C G T A A C T G A C T G C G A T C G A T C G T A A C T G A C G T
C G T A G C T A C G A T A C G T C T G A A C T G C T A G A G C T G A T C C T G A G A T C A C G T

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-ATATAGGTTAGT--
AAWCTAGGTCARDNN
A C G T C T G A A C G T C G T A A C G T C G T A A C T G A C T G C G A T C G A T C G T A A C T G A C G T A C G T A C G T
C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A

RORA(var.2)/MA0072.1/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---ATATAGGTTAGT
TATAAGTAGGTCAA-
A C G T A C G T A C G T C T G A A C G T C G T A A C G T C G T A A C T G A C T G C G A T C G A T C G T A A C T G A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:ATATAGGTTAGT
AAYTAGGTCA--
C T G A A C G T C G T A A C G T C G T A A C T G A C T G C G A T C G A T C G T A A C T G A C G T
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:ATATAGGTTAGT
AAYTAGGTCA--
C T G A A C G T C G T A A C G T C G T A A C T G A C T G C G A T C G A T C G T A A C T G A C G T
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.57
Offset:3
Orientation:forward strand
Alignment:ATATAGGTTAGT--
---AAGGCAAGTGT
C T G A A C G T C G T A A C G T C G T A A C T G A C T G C G A T C G A T C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

GATA1/MA0035.4/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:ATATAGGTTAGT-
--NNAGATTAGAN
C T G A A C G T C G T A A C G T C G T A A C T G A C T G C G A T C G A T C G T A A C T G A C G T A C G T
A C G T A C G T C G T A G C A T C G T A C A T G C G T A C G A T G C A T G C T A C A T G C G T A G C T A

RORA/MA0071.1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:ATATAGGTTAGT
ATCAAGGTCA--
C T G A A C G T C G T A A C G T C G T A A C T G A C T G C G A T C G A T C G T A A C T G A C G T
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T