Information for 9-CCATCCTT (Motif 35)

A G T C A G T C C T G A A C G T G T A C G T A C A G C T A C G T
Reverse Opposite:
C G T A T C G A C A T G A C T G T G C A A G C T T C A G A C T G
p-value:1e-3
log p-value:-9.130e+00
Information Content per bp:1.781
Number of Target Sequences with motif67.0
Percentage of Target Sequences with motif6.27%
Number of Background Sequences with motif1857.8
Percentage of Background Sequences with motif3.87%
Average Position of motif in Targets107.0 +/- 56.3bp
Average Position of motif in Background99.1 +/- 55.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CCATCCTT
AAGATATCCTT
A C G T A C G T A C G T A G T C A G T C C T G A A C G T G T A C G T A C A G C T A C G T
G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T

HOXA4/MA1496.1/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CCATCCTT--
--GTCATTAG
A G T C A G T C C T G A A C G T G T A C G T A C A G C T A C G T A C G T A C G T
A C G T A C G T T C A G A G C T T G A C C T G A A C G T A G C T T C G A T C A G

NR5A1/MA1540.1/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCATCCTT---
NTGACCTTGAN
A G T C A G T C C T G A A C G T G T A C G T A C A G C T A C G T A C G T A C G T A C G T
C T A G G A C T T C A G C T G A A G T C G T A C G C A T G A C T T A C G C T G A T G A C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CCATCCTT-
BNTGDCCTTG
A C G T A G T C A G T C C T G A A C G T G T A C G T A C A G C T A C G T A C G T
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G

HOXB4/MA1499.1/Jaspar

Match Rank:5
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CCATCCTT--
--ATCATTAG
A G T C A G T C C T G A A C G T G T A C G T A C A G C T A C G T A C G T A C G T
A C G T A C G T T C G A A G C T G T A C C T G A A C G T A C G T C T G A T C A G

HOXC4/MA1504.1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CCATCCTT--
--GTCATTAA
A G T C A G T C C T G A A C G T G T A C G T A C A G C T A C G T A C G T A C G T
A C G T A C G T T C A G G A C T G T A C C T G A A C G T A C G T C T G A T C G A

HOXD4/MA1507.1/Jaspar

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CCATCCTT--
--ATCATTAG
A G T C A G T C C T G A A C G T G T A C G T A C A G C T A C G T A C G T A C G T
A C G T A C G T T C G A A G C T G T A C C T G A A C G T A C G T C T G A C T A G

YY1/MA0095.2/Jaspar

Match Rank:8
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CCATCCTT
GCNGCCATCTTG
A C G T A C G T A C G T A C G T A G T C A G T C C T G A A C G T G T A C G T A C A G C T A C G T
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

HLTF/MA0109.1/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CCATCCTT----
--AACCTTATAT
A G T C A G T C C T G A A C G T G T A C G T A C A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A G C T A G T A C A G T C C G A T A C G T C G T A A C G T T C G A G A C T

POU6F1(var.2)/MA1549.1/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CCATCCTT--
NNCTCATTAT
A G T C A G T C C T G A A C G T G T A C G T A C A G C T A C G T A C G T A C G T
G C T A A T G C T G A C C G A T T G A C G T C A A C G T A G C T C T G A G A C T