Information for 1-CTGGTCATTA (Motif 4)

A G T C A C G T A C T G A C T G A C G T A G T C G T C A A C G T A C G T C G T A
Reverse Opposite:
A C G T C G T A G T C A A C G T A C T G C G T A A G T C G T A C C G T A C T A G
p-value:1e-15
log p-value:-3.467e+01
Information Content per bp:1.894
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.70%
Number of Background Sequences with motif121.2
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets107.0 +/- 48.8bp
Average Position of motif in Background99.6 +/- 55.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR1H4/MA1110.1/Jaspar

Match Rank:1
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:CTGGTCATTA-
NAGGTCATTGA
A G T C A C G T A C T G A C T G A C G T A G T C G T C A A C G T A C G T C G T A A C G T
C G A T T C G A C A T G C A T G A C G T G A T C T C G A A G C T G C A T T C A G T G C A

HOXA4/MA1496.1/Jaspar

Match Rank:2
Score:0.70
Offset:3
Orientation:forward strand
Alignment:CTGGTCATTA-
---GTCATTAG
A G T C A C G T A C T G A C T G A C G T A G T C G T C A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T T C A G A G C T T G A C C T G A A C G T A G C T T C G A T C A G

HOXB4/MA1499.1/Jaspar

Match Rank:3
Score:0.69
Offset:3
Orientation:forward strand
Alignment:CTGGTCATTA-
---ATCATTAG
A G T C A C G T A C T G A C T G A C G T A G T C G T C A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T T C G A A G C T G T A C C T G A A C G T A C G T C T G A T C A G

PH0073.1_Hoxc9/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CTGGTCATTA-----
GGAGGTCATTAATTAT
A C G T A G T C A C G T A C T G A C T G A C G T A G T C G T C A A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

HOXC4/MA1504.1/Jaspar

Match Rank:5
Score:0.68
Offset:3
Orientation:forward strand
Alignment:CTGGTCATTA-
---GTCATTAA
A G T C A C G T A C T G A C T G A C G T A G T C G T C A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T T C A G G A C T G T A C C T G A A C G T A C G T C T G A T C G A

HOXD4/MA1507.1/Jaspar

Match Rank:6
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CTGGTCATTA-
---ATCATTAG
A G T C A C G T A C T G A C T G A C G T A G T C G T C A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T T C G A A G C T G T A C C T G A A C G T A C G T C T G A C T A G

NKX6-3/MA1530.1/Jaspar

Match Rank:7
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CTGGTCATTA--
---CTCATTAAA
A G T C A C G T A C T G A C T G A C G T A G T C G T C A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T T A G C A G C T A G T C C G T A A C G T A G C T C T G A G C T A G C T A

HOXB7/MA1501.1/Jaspar

Match Rank:8
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CTGGTCATTA--
--GGTAATTAAC
A G T C A C G T A C T G A C T G A C G T A G T C G T C A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T T C A G A C T G A G C T G T C A G T C A A C G T G C A T C T G A T C G A T A G C

POU6F1(var.2)/MA1549.1/Jaspar

Match Rank:9
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CTGGTCATTA-
-NNCTCATTAT
A G T C A C G T A C T G A C T G A C G T A G T C G T C A A C G T A C G T C G T A A C G T
A C G T G C T A A T G C T G A C C G A T T G A C G T C A A C G T A G C T C T G A G A C T

HOXA6/MA1497.1/Jaspar

Match Rank:10
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CTGGTCATTA--
--GGTAATTAAC
A G T C A C G T A C T G A C T G A C G T A G T C G T C A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A C T G A T C G A G C T G T C A T C G A A C G T C G A T C G T A C T G A A T G C