Information for 21-TTAATGGCTCTC (Motif 25)

A C G T A C G T C G T A C G T A A C G T A C T G A C T G A G T C A C G T A G T C A C G T A G T C
Reverse Opposite:
A C T G C G T A A C T G C G T A A C T G A G T C A G T C C G T A A C G T A C G T C G T A C G T A
p-value:1e-3
log p-value:-8.327e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets96.0 +/- 0.0bp
Average Position of motif in Background110.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-TTAATGGCTCTC
GTTAATGGCC---
A C G T A C G T A C G T C G T A C G T A A C G T A C T G A C T G A G T C A C G T A G T C A C G T A G T C
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:2
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATGGCTCTC
NGANTTTTATGGCTCN-
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C T G A C T G A G T C A C G T A G T C A C G T A G T C
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T A C G T

NKX6-3/MA1530.1/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TTAATGGCTCTC
TTTAATGAN----
A C G T A C G T A C G T C G T A C G T A A C G T A C T G A C T G A G T C A C G T A G T C A C G T A G T C
C G A T C G A T A G C T C T G A C G T A A C G T T C A G C T G A A T C G A C G T A C G T A C G T A C G T

PB0135.1_Hoxa3_2/Jaspar

Match Rank:4
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TTAATGGCTCTC
CCTTAATNGNTTTT
A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C T G A C T G A G T C A C G T A G T C A C G T A G T C
A G T C A T G C G A C T C G A T C G T A C G T A A C G T T C A G A C T G G C A T C G A T G A C T C A G T A G C T

Isl1/MA1608.1/Jaspar

Match Rank:5
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TTAATGGCTCTC
NNCTAATGGNN---
A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C T G A C T G A G T C A C G T A G T C A C G T A G T C
A C G T T C A G G A T C C G A T C T G A C G T A G A C T C A T G C T A G T G C A G A C T A C G T A C G T A C G T

Hmx1/MA0896.1/Jaspar

Match Rank:6
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATGGCTCTC
ANNCATTAATTGCTNGN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C T G A C T G A G T C A C G T A G T C A C G T A G T C
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:7
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATGGCTCTC
ANNCATTAATTGCTNGN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C T G A C T G A G T C A C G T A G T C A C G T A G T C
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

HOXD8/MA0910.2/Jaspar

Match Rank:8
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TTAATGGCTCTC
GTAATTGC----
A C G T A C G T C G T A C G T A A C G T A C T G A C T G A G T C A C G T A G T C A C G T A G T C
A C T G A C G T G T C A C G T A A C G T A C G T C T A G A G T C A C G T A C G T A C G T A C G T

HOXB6/MA1500.1/Jaspar

Match Rank:9
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TTAATGGCTCTC
TTAATTAC----
A C G T A C G T C G T A C G T A A C G T A C T G A C T G A G T C A C G T A G T C A C G T A G T C
A G C T A G C T G T C A C G T A A C G T A C G T C T G A A G T C A C G T A C G T A C G T A C G T

HOXB8/MA1502.1/Jaspar

Match Rank:10
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TTAATGGCTCTC
NTAATTGC----
A C G T A C G T C G T A C G T A A C G T A C T G A C T G A G T C A C G T A G T C A C G T A G T C
A C T G A C G T G T C A C G T A A C G T A C G T C T A G T G A C A C G T A C G T A C G T A C G T