Information for 1-GCTGTAGT (Motif 2)

A C T G A G T C A C G T A C T G A C G T C G T A C A T G A C G T
Reverse Opposite:
C G T A G T A C A C G T C G T A A G T C C G T A A C T G G T A C
p-value:1e-5
log p-value:-1.181e+01
Information Content per bp:1.916
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif71.43%
Number of Background Sequences with motif6385.6
Percentage of Background Sequences with motif5.22%
Average Position of motif in Targets116.5 +/- 44.9bp
Average Position of motif in Background101.6 +/- 95.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GCTGTAGT--
GCTGTGGTTT
A C T G A G T C A C G T A C T G A C G T C G T A C A T G A C G T A C G T A C G T
A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T

PH0158.1_Rhox11_2/Jaspar

Match Rank:2
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----GCTGTAGT----
AGGACGCTGTAAAGGGA
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C T G A C G T C G T A C A T G A C G T A C G T A C G T A C G T A C G T
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

Rhox11/MA0629.1/Jaspar

Match Rank:3
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----GCTGTAGT----
AAGACGCTGTAAAGCGA
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C T G A C G T C G T A C A T G A C G T A C G T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:4
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----GCTGTAGT----
AAGACGCTGTAAAGCGA
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C T G A C G T C G T A C A T G A C G T A C G T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GCTGTAGT
GCTGTG--
A C T G A G T C A C G T A C T G A C G T C G T A C A T G A C G T
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GCTGTAGT---
-CTGTGGTTTN
A C T G A G T C A C G T A C T G A C G T C G T A C A T G A C G T A C G T A C G T A C G T
A C G T G A T C A C G T A C T G A G C T A C T G A C T G A G C T A G C T C G A T A T C G

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:7
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GCTGTAGT---
NNHTGTGGTTWN
A C G T A C T G A G T C A C G T A C T G A C G T C G T A C A T G A C G T A C G T A C G T A C G T
C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G

RUNX1/MA0002.2/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCTGTAGT--
GTCTGTGGTTT
A C G T A C T G A G T C A C G T A C T G A C G T C G T A C A T G A C G T A C G T A C G T
A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCTGTAGT--
NNTGTGGTTT
A C T G A G T C A C G T A C T G A C G T C G T A C A T G A C G T A C G T A C G T
A C G T G A C T C A G T A C T G G A C T A C T G A C T G A G C T A G C T C G A T

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCTGTAGT
NGCTN----
A C G T A C T G A G T C A C G T A C T G A C G T C G T A C A T G A C G T
T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T