Information for 9-CTCTATTGTACG (Motif 12)

A G T C A C G T A G T C A C G T C G T A A C G T A C G T A C T G A C G T C G T A A G T C A C T G
Reverse Opposite:
A G T C A C T G A C G T C G T A A G T C C G T A C G T A A C G T C G T A A C T G C G T A A C T G
p-value:1e-4
log p-value:-1.117e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets72.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0173.1_Sox21_2/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CTCTATTGTACG----
AATCAATTGTTCCGCTA
A C G T A G T C A C G T A G T C A C G T C G T A A C G T A C G T A C T G A C G T C G T A A G T C A C T G A C G T A C G T A C G T A C G T
T G A C T C A G A G C T A T G C G C T A C G T A A G C T C G A T A T C G C G A T A G C T A T G C T G A C A C T G G A T C C A G T T C G A

SOX9/MA0077.1/Jaspar

Match Rank:2
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CTCTATTGTACG
--CCATTGTTC-
A G T C A C G T A G T C A C G T C G T A A C G T A C G T A C T G A C G T C G T A A G T C A C T G
A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T

SOX8/MA0868.2/Jaspar

Match Rank:3
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CTCTATTGTACG
--CCATTGTTCT
A G T C A C G T A G T C A C G T C G T A A C G T A C G T A C T G A C G T C G T A A G T C A C T G
A C G T A C G T A T G C G A T C C G T A C A G T C G A T T C A G C G A T G A C T G A T C A C G T

SOX15/MA1152.1/Jaspar

Match Rank:4
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CTCTATTGTACG
--CTATTGTTTT
A G T C A C G T A G T C A C G T C G T A A C G T A C G T A C T G A C G T C G T A A G T C A C T G
A C G T A C G T A G T C G A C T C G T A A C G T C G A T T C A G C G A T G A C T G A C T G C A T

SOX14/MA1562.1/Jaspar

Match Rank:5
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CTCTATTGTACG-
---CATTGTTCGG
A G T C A C G T A G T C A C G T C G T A A C G T A C G T A C T G A C G T C G T A A G T C A C T G A C G T
A C G T A C G T A C G T G T A C T G C A C A G T A C G T T C A G C G A T G C A T G T A C C T A G A C T G

PB0065.1_Sox15_1/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CTCTATTGTACG---
ANNTCTATTGTTCNNNA
A C G T A C G T A G T C A C G T A G T C A C G T C G T A A C G T A C G T A C T G A C G T C G T A A G T C A C T G A C G T A C G T A C G T
C G T A C G T A T C G A A G C T G A T C G C A T C G T A C G A T C G A T C T A G C G A T G A C T G T A C G C T A G T A C G A C T C G T A

Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer

Match Rank:7
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CTCTATTGTACG-
-BCCWTTGTBYKV
A G T C A C G T A G T C A C G T C G T A A C G T A C G T A C T G A C G T C G T A A G T C A C T G A C G T
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A T G C G A C T A C T G T A C G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CTCTATTGTACG
-NCCATTGTTC-
A G T C A C G T A G T C A C G T C G T A A C G T A C G T A C T G A C G T C G T A A G T C A C T G
A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T

SOX2/MA0143.4/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTCTATTGTACG
NNCCATTGTNN-
A G T C A C G T A G T C A C G T C G T A A C G T A C G T A C T G A C G T C G T A A G T C A C T G
C G A T G C A T G A T C G A T C G C T A A G C T C G A T C T A G C G A T G C A T G C A T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CTCTATTGTACG
--CCATTGTTYB
A G T C A C G T A G T C A C G T C G T A A C G T A C G T A C T G A C G T C G T A A G T C A C T G
A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G