Information for 4-GTCGATCACT (Motif 11)

A C T G C G A T G T A C A T C G C G T A A C G T A T G C G C T A A G T C A C G T
Reverse Opposite:
T G C A A C T G C A G T A T C G C G T A A C G T A T G C A C T G C G T A A G T C
p-value:1e-12
log p-value:-2.881e+01
Information Content per bp:1.805
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif32.3
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets129.8 +/- 47.6bp
Average Position of motif in Background86.3 +/- 54.0bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:1
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GTCGATCACT
SCTGTCAVTCAV-
A C G T A C G T A C G T A C T G C G A T G T A C A T C G C G T A A C G T A T G C G C T A A G T C A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:2
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GTCGATCACT
NCYATMAATCAY-
A C G T A C G T A C G T A C T G C G A T G T A C A T C G C G T A A C G T A T G C G C T A A G T C A C G T
T A C G G A T C G A T C C T G A A G C T G T C A G C T A T C G A C G A T G A T C G C T A G A C T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GTCGATCACT
NCTGTCAATCAN-
A C G T A C G T A C G T A C T G C G A T G T A C A T C G C G T A A C G T A T G C G C T A A G T C A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T

GFI1/MA0038.2/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GTCGATCACT---
-CAAATCACTGCA
A C T G C G A T G T A C A T C G C G T A A C G T A T G C G C T A A G T C A C G T A C G T A C G T A C G T
A C G T A G T C T G C A G T C A C G T A A C G T G T A C C G T A T A G C C A G T C T A G G A T C G T C A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GTCGATCACT
GYCATCMATCAT-
A C G T A C G T A C G T A C T G C G A T G T A C A T C G C G T A A C G T A T G C G C T A A G T C A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:6
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GTCGATCACT
YCATCMATCA--
A C G T A C G T A C T G C G A T G T A C A T C G C G T A A C G T A T G C G C T A A G T C A C G T
G A T C G T A C C T G A A C G T G A T C G T C A C T G A A C G T G A T C G C T A A C G T A C G T

PH0016.1_Cux1_1/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GTCGATCACT---
ACCGGTTGATCACCTGA
A C G T A C G T A C G T A C G T A C T G C G A T G T A C A T C G C G T A A C G T A T G C G C T A A G T C A C G T A C G T A C G T A C G T
C T G A A T G C G A T C T C A G T C A G G A C T G C A T C T A G C T G A C G A T G A T C G C T A G T A C T A G C C G A T A T C G C T G A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GTCGATCACT-
TGTCTGDCACCT
A C G T A C T G C G A T G T A C A T C G C G T A A C G T A T G C G C T A A G T C A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

PKNOX1/MA0782.2/Jaspar

Match Rank:9
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----GTCGATCACT
NNGCTGTCACTCANN
A C G T A C G T A C G T A C G T A C G T A C T G C G A T G T A C A T C G C G T A A C G T A T G C G C T A A G T C A C G T
G A C T T C G A A T C G T G A C G C A T C T A G G A C T T A G C G C T A T G A C G A C T A G T C G C T A C G T A G C T A

CUX1/MA0754.1/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GTCGATCACT
NTATCGATTA--
A C G T A C G T A C T G C G A T G T A C A T C G C G T A A C G T A T G C G C T A A G T C A C G T
C A G T A C G T C G T A G C A T A G T C T C A G T C G A G A C T G A C T C T G A A C G T A C G T