Information for 1-CGATCAAC (Motif 34)

A G T C A C T G C G T A A C G T A G T C C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T A C T G C G T A A C G T A G T C A C T G
p-value:1e-2
log p-value:-6.722e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif176.3
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets23.0 +/- 0.0bp
Average Position of motif in Background90.4 +/- 134.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Dux/MA0611.1/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CGATCAAC
CCAATCAA-
A C G T A G T C A C T G C G T A A C G T A G T C C G T A C G T A A G T C
A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T

PH0026.1_Duxbl/Jaspar

Match Rank:2
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----CGATCAAC----
CGACCCAATCAACGGTG
A C G T A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C G T A G T C C G T A C G T A A G T C A C G T A C G T A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CGATCAAC
GGCCATTAAC
A C G T A C G T A G T C A C T G C G T A A C G T A G T C C G T A C G T A A G T C
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

SOX12/MA1561.1/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CGATCAAC-
ACCGAACAATG
A C G T A C G T A G T C A C T G C G T A A C G T A G T C C G T A C G T A A G T C A C G T
G T C A G T A C G A T C C A T G T G C A T C G A A G T C C G T A T G C A G A C T T A C G

PH0016.1_Cux1_1/Jaspar

Match Rank:5
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----CGATCAAC----
TNAGNTGATCAACCGGT
A C G T A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C G T A G T C C G T A C G T A A G T C A C G T A C G T A C G T A C G T
G A C T T A G C G C T A A T C G C A T G C G A T C T A G C G T A A G C T G A T C C G T A C T G A A G T C A G T C C T A G T A C G G A C T

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CGATCAAC
RGCAATNAAA
A C G T A C G T A G T C A C T G C G T A A C G T A G T C C G T A C G T A A G T C
C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:7
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CGATCAAC
HNRAATCAAT
A C G T A C G T A G T C A C T G C G T A A C G T A G T C C G T A C G T A A G T C
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CGATCAAC--
DGATCRATAN
A G T C A C T G C G T A A C G T A G T C C G T A C G T A A G T C A C G T A C G T
C T A G C T A G C T G A A C G T A G T C C T A G C G T A A C G T G T C A G A T C

SOX14/MA1562.1/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CGATCAAC-
CCGAACAATG
A C G T A G T C A C T G C G T A A C G T A G T C C G T A C G T A A G T C A C G T
T G A C G A T C C A T G C G T A G C T A A G T C C G T A G T C A A C G T C A T G

PBX1/MA0070.1/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CGATCAAC
CCATCAATCAAA
A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C G T A G T C C G T A C G T A A G T C
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A