Information for 4-AVHAATTTGTGC (Motif 4)

C T G A T A G C G A C T C G T A C G T A G C A T C A G T C G A T A C T G A C G T A T C G A G T C
Reverse Opposite:
T C A G T A G C C G T A A G T C C G T A G T C A C G T A A C G T G C A T C G T A A C T G A G C T
p-value:1e-4
log p-value:-1.033e+01
Information Content per bp:1.717
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif37.50%
Number of Background Sequences with motif881.7
Percentage of Background Sequences with motif0.85%
Average Position of motif in Targets142.3 +/- 33.4bp
Average Position of motif in Background98.9 +/- 96.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0033.1_Gbx1/Jaspar

Match Rank:1
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----AVHAATTTGTGC-
TGCCACTAATTAGTGTA
A C G T A C G T A C G T A C G T C T G A T A G C G A C T C G T A C G T A G C A T C A G T C G A T A C T G A C G T A T C G A G T C A C G T
G C A T C T A G A T G C T G A C T C G A G T A C G A C T G T C A C T G A A G C T A C G T C T G A A C T G A C G T A C T G A C G T G C T A

PH0039.1_Mnx1/Jaspar

Match Rank:2
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--AVHAATTTGTGC--
GTACTAATTAGTGGCG
A C G T A C G T C T G A T A G C G A C T C G T A C G T A G C A T C A G T C G A T A C T G A C G T A T C G A G T C A C G T A C G T
A C T G A C G T T G C A A T G C G A C T G T C A C G T A G A C T A C G T C T G A A T C G A C G T C T A G T A C G G A T C T A C G

PH0107.1_Msx2/Jaspar

Match Rank:3
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---AVHAATTTGTGC--
ANCGCTAATTGGTCTNN
A C G T A C G T A C G T C T G A T A G C G A C T C G T A C G T A G C A T C A G T C G A T A C T G A C G T A T C G A G T C A C G T A C G T
T C G A C T A G G T A C C T A G G T A C G A C T C G T A C G T A A C G T C G A T C T A G T A C G G A C T A T G C G A C T A C G T A G T C

PH0110.1_Nkx1-2/Jaspar

Match Rank:4
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----AVHAATTTGTGC-
GTGCACTAATTAGTGCA
A C G T A C G T A C G T A C G T C T G A T A G C G A C T C G T A C G T A G C A T C A G T C G A T A C T G A C G T A T C G A G T C A C G T
C A T G C A G T A C T G T G A C T C G A G A T C G A C T G T C A C G T A C G A T A C G T C T G A C T A G A C G T C T A G A T G C G C T A

PH0034.1_Gbx2/Jaspar

Match Rank:5
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----AVHAATTTGTGC-
AANCGCTAATTAGCNNN
A C G T A C G T A C G T A C G T C T G A T A G C G A C T C G T A C G T A G C A T C A G T C G A T A C T G A C G T A T C G A G T C A C G T
G T C A T G C A G A C T A T G C T C A G A T G C A G C T G T C A G C T A C A G T A C G T C T G A T A C G A G T C A C T G A T G C G C A T

PB0165.1_Sox11_2/Jaspar

Match Rank:6
Score:0.68
Offset:2
Orientation:forward strand
Alignment:AVHAATTTGTGC----
--AAAATTGTTATGAA
C T G A T A G C G A C T C G T A C G T A G C A T C A G T C G A T A C T G A C G T A T C G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C T G A C T G A C T G A A C G T G A C T T C A G C G A T G A C T G C T A C A G T T C A G C T G A C G T A

PH0029.1_En2/Jaspar

Match Rank:7
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----AVHAATTTGTGC-
NTNCACTAATTAGNGCA
A C G T A C G T A C G T A C G T C T G A T A G C G A C T C G T A C G T A G C A T C A G T C G A T A C T G A C G T A T C G A G T C A C G T
C G A T C A G T A G T C T A G C C T G A G A T C G A C T G C T A C G T A C G A T C A G T C T G A C T A G A C G T C A T G A G T C G C T A

PH0092.1_Lhx2/Jaspar

Match Rank:8
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----AVHAATTTGTGC-
NNNNNCTAATTAGTTTA
A C G T A C G T A C G T A C G T C T G A T A G C G A C T C G T A C G T A G C A T C A G T C G A T A C T G A C G T A T C G A G T C A C G T
A T C G C A G T A C G T G T A C T C G A G A T C G A C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C A G T A C G T G C T A

PB0175.1_Sox4_2/Jaspar

Match Rank:9
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AVHAATTTGTGC----
GGAAAAATTGTTAGGAA
A C G T C T G A T A G C G A C T C G T A C G T A G C A T C A G T C G A T A C T G A C G T A T C G A G T C A C G T A C G T A C G T A C G T
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A

PH0109.1_Nkx1-1/Jaspar

Match Rank:10
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----AVHAATTTGTGC-
NCCCACTAATTAGCGCA
A C G T A C G T A C G T A C G T C T G A T A G C G A C T C G T A C G T A G C A T C A G T C G A T A C T G A C G T A T C G A G T C A C G T
A G C T G T A C A T G C G A T C T C G A A G T C G A C T G T C A C G T A C G A T A C G T C T G A T C A G A G T C A C T G A T G C G C T A