Information for 3-GCGTTGGATT (Motif 7)

A C T G A G T C A C T G A C G T A C G T A C T G A C T G C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A A C G T A G T C A G T C C G T A C G T A A G T C A C T G A G T C
p-value:1e-4
log p-value:-9.871e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets136.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0114.1_Egr1_2/Jaspar

Match Rank:1
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GCGTTGGATT--
TGCGGAGTGGGACTGG
A C G T A C G T A C G T A C G T A C T G A G T C A C T G A C G T A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G

PITX1/MA0682.2/Jaspar

Match Rank:2
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:GCGTTGGATT--
----NGGATTAN
A C T G A G T C A C T G A C G T A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G T C A G C A T G G T C A A C G T A C G T C G T A C T A G

PITX2/MA1547.1/Jaspar

Match Rank:3
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:GCGTTGGATT--
----GGGATTAN
A C T G A G T C A C T G A C G T A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G T C A G C T A G G T C A A C G T A G C T C G T A C A G T

PITX3/MA0714.1/Jaspar

Match Rank:4
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GCGTTGGATT---
----GGGATTANN
A C T G A G T C A C T G A C G T A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

OTX2/MA0712.2/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GCGTTGGATT----
--AAGGGATTAGAA
A C T G A G T C A C T G A C G T A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A C G T A C T A G C T A G C T A G G T C A C A G T G C A T C G T A C T A G C G T A C G T A

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:GCGTTGGATT---
-----GGATTAGC
A C T G A G T C A C T G A C G T A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

RHOXF1/MA0719.1/Jaspar

Match Rank:7
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GCGTTGGATT--
----NGGATTAN
A C T G A G T C A C T G A C G T A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:8
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GCGTTGGATT--
----RGGATTAR
A C T G A G T C A C T G A C G T A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GCGTTGGATT-
---NGGGATTA
A C T G A G T C A C T G A C G T A C G T A C T G A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCGTTGGATT--
NNTGTGGATTSS
A C T G A G T C A C T G A C G T A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T
C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G