Information for 3-TAATTAAT (Motif 28)

A C G T G T C A T C G A A C G T A G C T T C G A G T C A A C G T
Reverse Opposite:
G T C A A C G T A G C T C T G A T G C A A G C T A C G T T G C A
p-value:1e-4
log p-value:-1.001e+01
Information Content per bp:1.685
Number of Target Sequences with motif121.0
Percentage of Target Sequences with motif17.95%
Number of Background Sequences with motif6048.1
Percentage of Background Sequences with motif12.62%
Average Position of motif in Targets86.5 +/- 52.0bp
Average Position of motif in Background100.5 +/- 56.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx3/MA0135.1/Jaspar

Match Rank:1
Score:0.84
Offset:-3
Orientation:reverse strand
Alignment:---TAATTAAT--
GATTAATTAATTT
A C G T A C G T A C G T A C G T G T C A T C G A A C G T A G C T T C G A G T C A A C G T A C G T A C G T
T C A G C T G A G C A T C G A T C T G A C G T A A C G T C G A T C G T A C G T A C G A T A C G T G C A T

PH0149.1_Pou3f4/Jaspar

Match Rank:2
Score:0.84
Offset:-4
Orientation:reverse strand
Alignment:----TAATTAAT-----
GANTTAATTAATTAANN
A C G T A C G T A C G T A C G T A C G T G T C A T C G A A C G T A G C T T C G A G T C A A C G T A C G T A C G T A C G T A C G T A C G T
C T A G G C T A G T C A G A C T C G A T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G T C A C G T A A C G T G A C T

PH0118.1_Nkx6-1_1/Jaspar

Match Rank:3
Score:0.83
Offset:-5
Orientation:reverse strand
Alignment:-----TAATTAAT----
CNNAGTAATTAATTNNC
A C G T A C G T A C G T A C G T A C G T A C G T G T C A T C G A A C G T A G C T T C G A G T C A A C G T A C G T A C G T A C G T A C G T
T A G C T C A G T C G A C T G A C A T G G A C T G T C A C G T A C G A T C G A T C T G A G C T A C G A T G C A T C G A T A C G T G A T C

PH0142.1_Pou1f1/Jaspar

Match Rank:4
Score:0.83
Offset:-4
Orientation:reverse strand
Alignment:----TAATTAAT-----
GANTTAATTAATTANNN
A C G T A C G T A C G T A C G T A C G T G T C A T C G A A C G T A G C T T C G A G T C A A C G T A C G T A C G T A C G T A C G T A C G T
T A C G G C T A G A T C G C A T C G A T G T C A G C T A C G A T C G A T C G T A C G T A C G A T C A G T G T C A G C T A A G C T G A T C

PH0135.1_Phox2a/Jaspar

Match Rank:5
Score:0.83
Offset:-4
Orientation:reverse strand
Alignment:----TAATTAAT----
NNACTAATTAATNNNN
A C G T A C G T A C G T A C G T A C G T G T C A T C G A A C G T A G C T T C G A G T C A A C G T A C G T A C G T A C G T A C G T
A T G C A G C T T C G A G A T C A G C T G T C A C G T A A G C T A C G T C T G A C T G A A G C T C A T G T G A C A G C T T C A G

PH0120.1_Nkx6-3/Jaspar

Match Rank:6
Score:0.82
Offset:-5
Orientation:reverse strand
Alignment:-----TAATTAAT----
CNNANTAATTAATTNNC
A C G T A C G T A C G T A C G T A C G T A C G T G T C A T C G A A C G T A G C T T C G A G T C A A C G T A C G T A C G T A C G T A C G T
T G A C T C G A T G C A T C G A A C T G G A C T T G C A C G T A G A C T G A C T C T G A G C T A C G A T C G A T C G A T A C G T G A T C

PH0146.1_Pou3f1/Jaspar

Match Rank:7
Score:0.82
Offset:-4
Orientation:reverse strand
Alignment:----TAATTAAT-----
NANTTAATTAATTANNN
A C G T A C G T A C G T A C G T A C G T G T C A T C G A A C G T A G C T T C G A G T C A A C G T A C G T A C G T A C G T A C G T A C G T
C A T G G C T A T G C A A G C T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G T C A T C G A A C G T G A C T

PH0173.1_Uncx/Jaspar

Match Rank:8
Score:0.82
Offset:-5
Orientation:reverse strand
Alignment:-----TAATTAAT----
CNCNTTAATTAATTANN
A C G T A C G T A C G T A C G T A C G T A C G T G T C A T C G A A C G T A G C T T C G A G T C A A C G T A C G T A C G T A C G T A C G T
T G A C A T C G A G T C T C A G A G C T G A C T T C G A C G T A G A C T A C G T C T G A C T G A A C G T A G C T C G T A A G C T A C T G

PH0095.1_Lhx5/Jaspar

Match Rank:9
Score:0.81
Offset:-6
Orientation:reverse strand
Alignment:------TAATTAAT---
ANNATTTAATTAATTNN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A T C G A A C G T A G C T T C G A G T C A A C G T A C G T A C G T A C G T
T C G A C A T G C A G T C G T A C G A T G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G A C T C A G T G A T C A T C G

PH0119.1_Nkx6-1_2/Jaspar

Match Rank:10
Score:0.81
Offset:-4
Orientation:reverse strand
Alignment:----TAATTAAT----
GANGTAATTAATTANN
A C G T A C G T A C G T A C G T A C G T G T C A T C G A A C G T A G C T T C G A G T C A A C G T A C G T A C G T A C G T A C G T
T C A G C T G A T G C A T C A G G A C T T G C A C G T A C G A T G A C T C T G A G C T A C G A T C G A T C T G A A G T C A G C T