Information for 20-CGTTTTATGA (Motif 34)

A G T C A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C T G
p-value:1e-3
log p-value:-8.007e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif10.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets20.0 +/- 0.0bp
Average Position of motif in Background52.4 +/- 73.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:1
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:CGTTTTATGA-
-NTTTTATGAC
A G T C A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T
A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

HOXC10/MA0905.1/Jaspar

Match Rank:2
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:CGTTTTATGA-
-NTTTTACGAC
A G T C A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T
A C G T C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C

HOXC9/MA0485.2/Jaspar

Match Rank:3
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:CGTTTTATGA-
-NTTTTACGAC
A G T C A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T
A C G T C T G A C G A T A C G T A C G T C G A T G T C A A G T C A C T G C T G A A G T C

CDX1/MA0878.2/Jaspar

Match Rank:4
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:CGTTTTATGA--
-GTTTTATGGCC
A G T C A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A C G T
A C G T T C A G C A G T A G C T A C G T A G C T C G T A A C G T A C T G T C A G G A T C G T A C

HOXB9/MA1503.1/Jaspar

Match Rank:5
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:CGTTTTATGA-
-NTTTTACGAC
A G T C A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T
A C G T C T G A C G A T C A G T A C G T C G A T G T C A A G T C A C T G C T G A A G T C

HOXD10/MA1506.1/Jaspar

Match Rank:6
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:CGTTTTATGA--
-NTTTTACGACC
A G T C A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A C G T
A C G T C T A G C G A T C A G T A C G T G C A T G T C A A G T C A C T G T C G A A G T C A G T C

CDX4/MA1473.1/Jaspar

Match Rank:7
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:CGTTTTATGA--
-GTTTTATTGCC
A G T C A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A C G T
A C G T T C A G C A G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G T C G T A C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:8
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:CGTTTTATGA--
DGWTTTATGRCN
A G T C A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

PH0065.1_Hoxc10/Jaspar

Match Rank:9
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-CGTTTTATGA-----
ANNTTTTACGACNTNN
A C G T A G T C A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A

HOXD12/MA0873.1/Jaspar

Match Rank:10
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:CGTTTTATGA--
-NTTTTACGACT
A G T C A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A C G T
A C G T C A G T C G A T G C A T A G C T G C A T C T G A A G T C A T C G T C G A A G T C A G C T