Information for 5-AAAACCCTAAAA (Motif 6)

T C G A G C T A T G C A T G C A G T A C G A T C G A T C G C A T G C T A T G C A T G C A C G T A
Reverse Opposite:
G C A T A C G T A C G T C G A T C G T A C T A G C T A G C A T G A C G T A C G T C G A T A G C T
p-value:1e-13
log p-value:-3.018e+01
Information Content per bp:1.715
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.15%
Number of Background Sequences with motif98.3
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets105.0 +/- 58.1bp
Average Position of motif in Background90.1 +/- 51.7bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)3.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0064.1_Hoxb9/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AAAACCCTAAAA----
AGAGCCATAAAATTCG
T C G A G C T A T G C A T G C A G T A C G A T C G A T C G C A T G C T A T G C A T G C A C G T A A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:2
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AAAACCCTAAAA
--VGCCATAAAA
T C G A G C T A T G C A T G C A G T A C G A T C G A T C G C A T G C T A T G C A T G C A C G T A
A C G T A C G T T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A

PH0047.1_Hoxa11/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AAAACCCTAAAA---
TAAAGTCGTAAAACAT
A C G T T C G A G C T A T G C A T G C A G T A C G A T C G A T C G C A T G C T A T G C A T G C A C G T A A C G T A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AAAACCCTAAAA--
--NGYCATAAAWCH
T C G A G C T A T G C A T G C A G T A C G A T C G A T C G C A T G C T A T G C A T G C A C G T A A C G T A C G T
A C G T A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

PH0066.1_Hoxc11/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AAAACCCTAAAA---
TAAAGTCGTAAAATAG
A C G T T C G A G C T A T G C A T G C A G T A C G A T C G A T C G C A T G C T A T G C A T G C A C G T A A C G T A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

HOXB13/MA0901.2/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AAAACCCTAAAA---
-AACCAATAAAATTT
T C G A G C T A T G C A T G C A G T A C G A T C G A T C G C A T G C T A T G C A T G C A C G T A A C G T A C G T A C G T
A C G T C G T A C G T A G T A C G A T C G C T A C G T A A C G T C G T A G C T A G C T A G C T A G C A T G C A T G C A T

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AAAACCCTAAAA
--KGCCATAAAA
T C G A G C T A T G C A T G C A G T A C G A T C G A T C G C A T G C T A T G C A T G C A C G T A
A C G T A C G T C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A

PH0057.1_Hoxb13/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AAAACCCTAAAA----
AACCCAATAAAATTCG
T C G A G C T A T G C A T G C A G T A C G A T C G A T C G C A T G C T A T G C A T G C A C G T A A C G T A C G T A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

PB0136.1_IRC900814_2/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----AAAACCCTAAAA
ATGGAAAGTCGTAAAA
A C G T A C G T A C G T A C G T T C G A G C T A T G C A T G C A G T A C G A T C G A T C G C A T G C T A T G C A T G C A C G T A
C T G A A G C T A C T G C T A G C T G A T C G A G T C A A C T G G A C T A G T C C A T G A C G T C T G A C G T A T C G A G C T A

PH0075.1_Hoxd10/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AAAACCCTAAAA-----
AATGCAATAAAATTTAT
T C G A G C T A T G C A T G C A G T A C G A T C G A T C G C A T G C T A T G C A T G C A C G T A A C G T A C G T A C G T A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T