Information for 2-TGGTCABTCGVA (Motif 2)

C G A T A C T G A C T G A C G T A G T C C G T A A G T C A C G T A T G C A T C G T C G A C G T A
Reverse Opposite:
C G A T A C G T A T G C A T C G C G T A T A C G A C G T C T A G C G T A A G T C G T A C C G T A
p-value:1e-7
log p-value:-1.656e+01
Information Content per bp:1.761
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif489.8
Percentage of Background Sequences with motif0.74%
Average Position of motif in Targets88.2 +/- 44.7bp
Average Position of motif in Background100.8 +/- 72.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR1H4/MA1110.1/Jaspar

Match Rank:1
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-TGGTCABTCGVA
NAGGTCATTGA--
A C G T C G A T A C T G A C T G A C G T A G T C C G T A A G T C A C G T A T G C A T C G T C G A C G T A
C G A T T C G A C A T G C A T G A C G T G A T C T C G A A G C T G C A T T C A G T G C A A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TGGTCABTCGVA
AGGTCA------
C G A T A C T G A C T G A C G T A G T C C G T A A G T C A C G T A T G C A T C G T C G A C G T A
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:3
Score:0.70
Offset:1
Orientation:forward strand
Alignment:TGGTCABTCGVA
-AGTCACGC---
C G A T A C T G A C T G A C G T A G T C C G T A A G T C A C G T A T G C A T C G T C G A C G T A
A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T A C G T

NR2C1/MA1535.1/Jaspar

Match Rank:4
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TGGTCABTCGVA
CGAGGTCAC-----
A C G T A C G T C G A T A C T G A C T G A C G T A G T C C G T A A G T C A C G T A T G C A T C G T C G A C G T A
G T A C C T A G T C G A A C T G A C T G A C G T A T G C C T G A G A T C A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:5
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TGGTCABTCGVA
AGRGGTCA------
A C G T A C G T C G A T A C T G A C T G A C G T A G T C C G T A A G T C A C G T A T G C A T C G T C G A C G T A
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

PKNOX1/MA0782.2/Jaspar

Match Rank:6
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---TGGTCABTCGVA
NNGCTGTCACTCANN
A C G T A C G T A C G T C G A T A C T G A C T G A C G T A G T C C G T A A G T C A C G T A T G C A T C G T C G A C G T A
G A C T T C G A A T C G T G A C G C A T C T A G G A C T T A G C G C T A T G A C G A C T A G T C G C T A C G T A G C T A

EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer

Match Rank:7
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------TGGTCABTCGVA
NRBCARRGGTCA------
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C T G A C T G A C G T A G T C C G T A A G T C A C G T A T G C A T C G T C G A C G T A
T C A G T C A G A C G T G T A C G C T A T C A G C T G A A C T G A C T G A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----TGGTCABTCGVA
ATCAAGGTCA------
A C G T A C G T A C G T A C G T C G A T A C T G A C T G A C G T A G T C C G T A A G T C A C G T A T G C A T C G T C G A C G T A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:9
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---TGGTCABTCGVA
CAAAGGTCAAGGG--
A C G T A C G T A C G T C G A T A C T G A C T G A C G T A G T C C G T A A G T C A C G T A T G C A T C G T C G A C G T A
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TGGTCABTCGVA
TRAGGTCA------
A C G T A C G T C G A T A C T G A C T G A C G T A G T C C G T A A G T C A C G T A T G C A T C G T C G A C G T A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T