Information for 16-AGCYTWRWKGMC (Motif 16)

C G T A A C T G A G T C A G C T A C G T C G A T C T G A C G T A A C T G A C T G G T C A A G T C
Reverse Opposite:
A C T G A C G T A G T C G T A C C G A T A G C T C G T A C G T A C T G A A C T G A G T C A C G T
p-value:1e-6
log p-value:-1.469e+01
Information Content per bp:1.818
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif38.9
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets153.3 +/- 18.8bp
Average Position of motif in Background97.7 +/- 52.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGCYTWRWKGMC
CAAGCTT-------
A C G T A C G T C G T A A C T G A G T C A G C T A C G T C G A T C T G A C G T A A C T G A C T G G T C A A G T C
G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGCYTWRWKGMC
CAGCC--------
A C G T C G T A A C T G A G T C A G C T A C G T C G A T C T G A C G T A A C T G A C T G G T C A A G T C
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CDX1/MA0878.2/Jaspar

Match Rank:3
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:AGCYTWRWKGMC
-GTTTTATGGCC
C G T A A C T G A G T C A G C T A C G T C G A T C T G A C G T A A C T G A C T G G T C A A G T C
A C G T T C A G C A G T A G C T A C G T A G C T C G T A A C G T A C T G T C A G G A T C G T A C

HOXD13/MA0909.2/Jaspar

Match Rank:4
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:AGCYTWRWKGMC
-GTTTTATTGGG
C G T A A C T G A G T C A G C T A C G T C G A T C T G A C G T A A C T G A C T G G T C A A G T C
A C G T A C T G A C G T A C G T A G C T A C G T C G T A A G C T A C G T A C T G A T C G A T C G

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:5
Score:0.53
Offset:3
Orientation:forward strand
Alignment:AGCYTWRWKGMC
---CTAATKGV-
C G T A A C T G A G T C A G C T A C G T C G A T C T G A C G T A A C T G A C T G G T C A A G T C
A C G T A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T

CDX4/MA1473.1/Jaspar

Match Rank:6
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:AGCYTWRWKGMC
-GTTTTATTGCC
C G T A A C T G A G T C A G C T A C G T C G A T C T G A C G T A A C T G A C T G G T C A A G T C
A C G T T C A G C A G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G T C G T A C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:7
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:AGCYTWRWKGMC
TGATTTATGGCC
C G T A A C T G A G T C A G C T A C G T C G A T C T G A C G T A A C T G A C T G G T C A A G T C
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:AGCYTWRWKGMC
--TTTNATTGCY
C G T A A C T G A G T C A G C T A C G T C G A T C T G A C G T A A C T G A C T G G T C A A G T C
A C G T A C G T A C G T A C G T C G A T A C G T G T C A A C G T C A G T C T A G A T G C G A T C

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:9
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--AGCYTWRWKGMC---
TGACCTTTCGTGACCTT
A C G T A C G T C G T A A C T G A G T C A G C T A C G T C G A T C T G A C G T A A C T G A C T G G T C A A G T C A C G T A C G T A C G T
A G C T C T A G C G T A T G A C G T A C A G C T A G C T A G C T T A G C C A T G A G C T A C T G T G C A G T A C T A G C A G C T G A C T

PH0013.1_Cdx2/Jaspar

Match Rank:10
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-AGCYTWRWKGMC---
NAATTTTATTACCNNN
A C G T C G T A A C T G A G T C A G C T A C G T C G A T C T G A C G T A A C T G A C T G G T C A A G T C A C G T A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T