Information for 3-TGTCTAGCTCAA (Motif 3)

C G A T A C T G A C G T G T A C A C G T C G T A A T C G A G T C A C G T A T G C C G T A C G T A
Reverse Opposite:
C G A T A C G T A T C G C G T A C T A G A T G C A C G T C G T A A C T G C G T A A G T C C G T A
p-value:1e-15
log p-value:-3.662e+01
Information Content per bp:1.835
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.47%
Number of Background Sequences with motif15.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets85.0 +/- 33.5bp
Average Position of motif in Background79.8 +/- 48.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4/MA1153.1/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TGTCTAGCTCAA
TGTCTAGA----
C G A T A C T G A C G T G T A C A C G T C G T A A T C G A G T C A C G T A T G C C G T A C G T A
G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGTCTAGCTCAA
TWGTCTGV-----
A C G T C G A T A C T G A C G T G T A C A C G T C G T A A T C G A G T C A C G T A T G C C G T A C G T A
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

FOXK2/MA1103.2/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TGTCTAGCTCAA
NNTGTTTACNN---
A C G T A C G T C G A T A C T G A C G T G T A C A C G T C G T A A T C G A G T C A C G T A T G C C G T A C G T A
A G T C G C A T C G A T C T A G G A C T C A G T C G A T G C T A G A T C G C T A G C A T A C G T A C G T A C G T

Foxf1/MA1606.1/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TGTCTAGCTCAA
NNTGTTTACAN---
A C G T A C G T C G A T A C T G A C G T G T A C A C G T C G T A A T C G A G T C A C G T A T G C C G T A C G T A
G C A T G A C T C G A T T C A G G A C T C G A T C G A T G T C A A G T C G C T A G C A T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGTCTAGCTCAA
CTGTCTGG-----
A C G T C G A T A C T G A C G T G T A C A C G T C G T A A T C G A G T C A C G T A T G C C G T A C G T A
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T

FOXP1/MA0481.3/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TGTCTAGCTCAA
NNTGTTTACNN---
A C G T A C G T C G A T A C T G A C G T G T A C A C G T C G T A A T C G A G T C A C G T A T G C C G T A C G T A
C G A T C G T A C G A T T C A G C G A T C A G T C A G T G C T A G A T C G C T A G C A T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---TGTCTAGCTCAA
VBSYGTCTGG-----
A C G T A C G T A C G T C G A T A C T G A C G T G T A C A C G T C G T A A T C G A G T C A C G T A T G C C G T A C G T A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

FOXA3/MA1683.1/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TGTCTAGCTCAA
NNTGTTTACNN---
A C G T A C G T C G A T A C T G A C G T G T A C A C G T C G T A A T C G A G T C A C G T A T G C C G T A C G T A
G C A T G C T A C G A T T C A G C G A T C A G T C A G T C T G A G A T C G C T A G A C T A C G T A C G T A C G T

FOXP2/MA0593.1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TGTCTAGCTCAA
TNTGTTTACTT---
A C G T A C G T C G A T A C T G A C G T G T A C A C G T C G T A A T C G A G T C A C G T A T G C C G T A C G T A
G A C T A G C T A C G T C T A G A C G T A C G T A C G T C G T A A G T C G C A T G A C T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----TGTCTAGCTCAA
NNTNNTGTCTGGNNTNG
A C G T A C G T A C G T A C G T A C G T C G A T A C T G A C G T G T A C A C G T C G T A A T C G A G T C A C G T A T G C C G T A C G T A
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G