Information for 6-GAAAAATGCG (Motif 15)

A C T G C G T A C G T A C G T A C G T A C G T A A C G T A C T G A G T C A C T G
Reverse Opposite:
A G T C A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C
p-value:1e-3
log p-value:-8.464e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif7.69%
Number of Background Sequences with motif0.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets188.0 +/- 0.0bp
Average Position of motif in Background77.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX14/MA1562.1/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GAAAAATGCG
CCGAACAATG--
A C G T A C G T A C T G C G T A C G T A C G T A C G T A C G T A A C G T A C T G A G T C A C T G
T G A C G A T C C A T G C G T A G C T A A G T C C G T A G T C A A C G T C A T G A C G T A C G T

PB0146.1_Mafk_2/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GAAAAATGCG---
GAAAAAATTGCAAGG
A C G T A C G T A C T G C G T A C G T A C G T A C G T A C G T A A C G T A C T G A G T C A C T G A C G T A C G T A C G T
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

SOX8/MA0868.2/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GAAAAATGCG
AGAACAATGG-
A C G T A C T G C G T A C G T A C G T A C G T A C G T A A C G T A C T G A G T C A C T G
T G C A C T A G C T G A C G T A A G T C C G T A G T C A G C A T C T A G T A C G A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GAAAAATGCG
GAACAATGGN
A C T G C G T A C G T A C G T A C G T A C G T A A C G T A C T G A G T C A C T G
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GAAAAATGCG
VRAACAATGG-
A C G T A C T G C G T A C G T A C G T A C G T A C G T A A C G T A C T G A G T C A C T G
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:6
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GAAAAATGCG--
NNNNNGAACAATTGANN
A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G T A C G T A C G T A A C G T A C T G A G T C A C T G A C G T A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

NFATC2/MA0152.1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GAAAAATGCG
TGGAAAA-----
A C G T A C G T A C T G C G T A C G T A C G T A C G T A C G T A A C G T A C T G A G T C A C T G
C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T A C G T A C G T A C G T A C G T

SOX13/MA1120.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GAAAAATGCG-
AAACAATGGCA
A C T G C G T A C G T A C G T A C G T A C G T A A C G T A C T G A G T C A C T G A C G T
C T G A T C G A C T G A A G T C G C T A C T G A G C A T C T A G T C A G T G A C G C T A

SOX12/MA1561.1/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GAAAAATGCG
ACCGAACAATG--
A C G T A C G T A C G T A C T G C G T A C G T A C G T A C G T A C G T A A C G T A C T G A G T C A C T G
G T C A G T A C G A T C C A T G T G C A T C G A A G T C C G T A T G C A G A C T T A C G A C G T A C G T

Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GAAAAATGCG
VVRRAACAATGG-
A C G T A C G T A C G T A C T G C G T A C G T A C G T A C G T A C G T A A C G T A C T G A G T C A C T G
T G A C T A G C T C A G T C G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T A C G A C G T