Information for 4-AGTTATTTGGTG (Motif 5)

C G T A A C T G A C G T A C G T C G T A A C G T A C G T A C G T A C T G A C T G A C G T A C T G
Reverse Opposite:
A G T C C G T A A G T C A G T C C G T A C G T A C G T A A C G T C G T A C G T A A G T C A C G T
p-value:1e-4
log p-value:-1.054e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets134.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0006.1_Barhl2/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AGTTATTTGGTG---
NNNTTAATTGGTTTTT
A C G T C G T A A C T G A C G T A C G T C G T A A C G T A C G T A C G T A C T G A C T G A C G T A C T G A C G T A C G T A C G T
C G A T C G A T T A G C G A C T C G A T C G T A C G T A C G A T G A C T C T A G C T A G A G C T G A C T C A G T C A G T C A G T

PH0108.1_Msx3/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AGTTATTTGGTG---
NNNTTAATTGGTTTTN
A C G T C G T A A C T G A C G T A C G T C G T A A C G T A C G T A C G T A C T G A C T G A C G T A C T G A C G T A C G T A C G T
C G T A C G T A G T C A G A C T G A C T C G T A C G T A A C G T A G C T C T A G T A C G A C G T G A C T C A G T A G C T A C T G

LHX2/MA0700.2/Jaspar

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AGTTATTTGGTG
-NNTAATTGGNN
C G T A A C T G A C G T A C G T C G T A A C G T A C G T A C G T A C T G A C T G A C G T A C T G
A C G T C G T A G C A T C G A T C G T A G C T A C G A T C G A T C T A G T A C G G C A T G C A T

PH0005.1_Barhl1/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AGTTATTTGGTG---
GNNTTAATTGGTTGTT
A C G T C G T A A C T G A C G T A C G T C G T A A C G T A C G T A C G T A C T G A C T G A C G T A C T G A C G T A C G T A C G T
C A T G G C T A T G C A G A C T C G A T C G T A C G T A C G A T A G C T C T A G T A C G G A C T A G C T C A T G G A C T C A G T

PH0107.1_Msx2/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AGTTATTTGGTG---
ANCGCTAATTGGTCTNN
A C G T A C G T C G T A A C T G A C G T A C G T C G T A A C G T A C G T A C G T A C T G A C T G A C G T A C T G A C G T A C G T A C G T
T C G A C T A G G T A C C T A G G T A C G A C T C G T A C G T A A C G T C G A T C T A G T A C G G A C T A T G C G A C T A C G T A G T C

PH0154.1_Prrx1/Jaspar

Match Rank:6
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AGTTATTTGGTG--
ANNAGTTAATTAGTTAN
A C G T A C G T A C G T C G T A A C T G A C G T A C G T C G T A A C G T A C G T A C G T A C T G A C T G A C G T A C T G A C G T A C G T
T C G A A T C G G A C T G T C A T C A G A G C T G A C T C T G A C T G A A G C T A C G T C T G A C T A G A G C T C A G T T G C A A T G C

RAX/MA0718.1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AGTTATTTGGTG
-NTTAATTGNN-
C G T A A C T G A C G T A C G T C G T A A C G T A C G T A C G T A C T G A C T G A C G T A C T G
A C G T C T A G G A C T G C A T C G T A C G T A C A G T C G A T C T A G T C A G A G T C A C G T

MSX2/MA0708.1/Jaspar

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:AGTTATTTGGTG
--NTAATTGG--
C G T A A C T G A C G T A C G T C G T A A C G T A C G T A C G T A C T G A C T G A C G T A C T G
A C G T A C G T A G C T C A G T T C G A C G T A A C G T C A G T C T A G A T C G A C G T A C G T

GBX1/MA0889.1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AGTTATTTGGTG
-GCTAATTAGN-
C G T A A C T G A C G T A C G T C G T A A C G T A C G T A C G T A C T G A C T G A C G T A C T G
A C G T T C A G A T G C C G A T C T G A C T G A A C G T A G C T C T G A T A C G A G C T A C G T

HESX1/MA0894.1/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AGTTATTTGGTG
-GCTAATTGGC-
C G T A A C T G A C G T A C G T C G T A A C G T A C G T A C G T A C T G A C T G A C G T A C T G
A C G T T C A G G A T C C G A T C T G A T C G A A C G T A G C T C T A G T C A G G A T C A C G T