Information for 6-CCACATGCATAC (Motif 11)

A G T C A G T C C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A A G T C
Reverse Opposite:
A C T G A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C T G A C G T A C T G A C T G
p-value:1e-4
log p-value:-9.297e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets100.0 +/- 0.0bp
Average Position of motif in Background76.5 +/- 65.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MXI1/MA1108.2/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CCACATGCATAC
GACACATGGC---
A C G T A G T C A G T C C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A A G T C
C T A G T C G A G A T C C T G A A G T C C T G A A G C T C T A G A C T G A T G C A C G T A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CCACATGCATAC---
GACCACATTCATACAAT
A C G T A C G T A G T C A G T C C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A A G T C A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.65
Offset:4
Orientation:forward strand
Alignment:CCACATGCATAC--
----ATGMATATDC
A G T C A G T C C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

MYC/MA0147.3/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCACATGCATAC
GGCCACGTGCCC--
A C G T A C G T A G T C A G T C C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A A G T C
T A C G T A C G T A G C T G A C C T G A A G T C T C A G A G C T A T C G A T G C A G T C A T G C A C G T A C G T

POU5F1/MA1115.1/Jaspar

Match Rank:5
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CCACATGCATAC-
--ATATGCAAATT
A G T C A G T C C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A A G T C A C G T
A C G T A C G T C G T A G C A T T C G A G A C T C T A G A G T C G C T A C T G A G C T A G C A T C A G T

PH0148.1_Pou3f3/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCACATGCATAC---
TNNATTATGCATANNTT
A C G T A C G T A G T C A G T C C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A A G T C A C G T A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

TCF3/MA0522.3/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CCACATGCATAC
CGCACCTGCCC--
A C G T A G T C A G T C C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A A G T C
T A G C T A C G A T G C T C G A A T G C T A G C A G C T T C A G A G T C T A G C A T G C A C G T A C G T

c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCACATGCATAC
NNCCACGTGG----
A C G T A C G T A G T C A G T C C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A A G T C
T C A G T C A G T A G C A G T C C T G A A G T C C T A G A C G T A C T G A T C G A C G T A C G T A C G T A C G T

TCF12(var.2)/MA1648.1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCACATGCATAC
CGCACCTGCCG--
A C G T A G T C A G T C C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A A G T C
T A G C T A C G A G T C T C G A A T G C T A G C A G C T T C A G A G T C A G T C A T C G A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CCACATGCATAC--
----ATGAATATTC
A G T C A G T C C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C