Information for 2-GAAGCATC (Motif 8)

A C T G C G T A C G T A A C T G A G T C C G T A A C G T A G T C
Reverse Opposite:
A C T G C G T A A C G T A C T G A G T C A C G T A C G T A G T C
p-value:1e-4
log p-value:-9.694e+00
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif23.08%
Number of Background Sequences with motif389.6
Percentage of Background Sequences with motif0.61%
Average Position of motif in Targets82.0 +/- 16.9bp
Average Position of motif in Background102.5 +/- 80.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GAAGCATC
NGAAGC---
A C G T A C T G C G T A C G T A A C T G A G T C C G T A A C G T A G T C
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GAAGCATC--
AGGAAACAGCTG
A C G T A C G T A C T G C G T A C G T A A C T G A G T C C G T A A C G T A G T C A C G T A C G T
T C G A A C T G A C T G C G T A C G T A T C G A A G T C C T G A A T C G G T A C G C A T C A T G

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:3
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------GAAGCATC-
ADGGYAGYAGCATCT
A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C T G A G T C C G T A A C G T A G T C A C G T
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T

OSR2/MA1646.1/Jaspar

Match Rank:4
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GAAGCATC
AAACAGAAGCAG-
A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C T G A G T C C G T A A C G T A G T C
G T C A G T C A T G C A T A G C C T G A T A C G C G T A T C G A C T A G A G T C G T C A T C A G A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GAAGCATC
-AAGCTTG
A C T G C G T A C G T A A C T G A G T C C G T A A C G T A G T C
A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GAAGCATC------------
GAAGTANCACGAATNMRAGT
A C T G C G T A C G T A A C T G A G T C C G T A A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T

HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.60
Offset:-7
Orientation:forward strand
Alignment:-------GAAGCATC-----
NNTTCTGGAANNTTCTAGAA
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C T G A G T C C G T A A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A T G C T A G C A G C T A G C T T G A C G A C T T C A G T A C G G T C A C T G A A T C G T A G C G A C T C A G T A G T C A G C T T C G A A T C G T G C A T G C A

HAND2/MA1638.1/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GAAGCATC----
--NNCATCTGNN
A C T G C G T A C G T A A C T G A G T C C G T A A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T C T A G T G A C A G T C T C G A A G C T T G A C A G C T T A C G A C T G G A C T

Ptf1a/MA1618.1/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GAAGCATC-----
NNAACATCTGTNN
A C T G C G T A C G T A A C T G A G T C C G T A A C G T A G T C A C G T A C G T A C G T A C G T A C G T
C A G T T G C A T C G A T G C A G A T C C T G A A C G T T G A C A G C T C T A G A C G T A C G T G C A T

ETV4/MA0764.2/Jaspar

Match Rank:10
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GAAGCATC
ACAGGAAGTG--
A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C T G A G T C C G T A A C G T A G T C
T C G A T A G C G T C A A T C G A C T G C G T A G T C A A C T G A G C T T C A G A C G T A C G T