Information for 12-GAATTATC (Motif 35)

A C T G C G T A C G T A A C G T C G A T C G T A A C G T A G T C
Reverse Opposite:
C T A G C G T A A C G T C G T A C G T A C G A T A C G T A G T C
p-value:1e-2
log p-value:-5.900e+00
Information Content per bp:1.908
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.89%
Number of Background Sequences with motif416.4
Percentage of Background Sequences with motif0.87%
Average Position of motif in Targets101.5 +/- 58.0bp
Average Position of motif in Background95.6 +/- 57.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:1
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----GAATTATC---
AAATGATTTATGGCT
A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T C G A T C G T A A C G T A G T C A C G T A C G T A C G T
C T G A C G T A C G T A C G A T C T A G C G T A C G A T C G A T C A G T T C G A A G C T C A T G C T A G A G T C G A C T

MF0010.1_Homeobox_class/Jaspar

Match Rank:2
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GAATTATC
-AATTATT
A C T G C G T A C G T A A C G T C G A T C G T A A C G T A G T C
A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T

DPRX/MA1480.1/Jaspar

Match Rank:3
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GAATTATC-
NGGATTATCT
A C G T A C T G C G T A C G T A A C G T C G A T C G T A A C G T A G T C A C G T
T A C G T C A G C A T G G T C A A C G T A C G T C G T A C A G T A T G C A G C T

PBX2/MA1113.2/Jaspar

Match Rank:4
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---GAATTATC--
NNTGATTTATGNN
A C G T A C G T A C G T A C T G C G T A C G T A A C G T C G A T C G T A A C G T A G T C A C G T A C G T
C G T A C T G A C G A T C T A G C G T A C G A T C G A T C A G T T C G A G A C T C A T G C T G A A G T C

Dlx1/MA0879.1/Jaspar

Match Rank:5
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GAATTATC
CCTAATTATC
A C G T A C G T A C T G C G T A C G T A A C G T C G A T C G T A A C G T A G T C
T G A C T G A C G A C T T G C A G C T A C G A T A C G T G C T A A C G T A T G C

PH0022.1_Dlx3/Jaspar

Match Rank:6
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----GAATTATC----
NNNGGTAATTATNGNGN
A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T C G A T C G T A A C G T A G T C A C G T A C G T A C G T A C G T
C A T G C G A T A T G C C A T G T C A G G A C T G C T A C G T A A C G T C G A T C T G A G A C T G T A C A C T G A G T C C A T G T G C A

HESX1/MA0894.1/Jaspar

Match Rank:7
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--GAATTATC
NCCAATTANC
A C G T A C G T A C T G C G T A C G T A A C G T C G A T C G T A A C G T A G T C
C T A G A G T C G A T C C T G A G T C A A G C T G A C T G C T A C T A G A G T C

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GAATTATC
NGGGATTA--
A C G T A C G T A C T G C G T A C G T A A C G T C G A T C G T A A C G T A G T C
T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:9
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GAATTATC---
TGATTTATGGCC
A C G T A C T G C G T A C G T A A C G T C G A T C G T A A C G T A G T C A C G T A C G T A C G T
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:10
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GAATTATC--
RTGATTKATRGN
A C G T A C G T A C T G C G T A C G T A A C G T C G A T C G T A A C G T A G T C A C G T A C G T
C T G A C G A T C T A G C G T A A G C T C G A T C A G T C T G A G A C T C T A G C T A G A T G C