Information for 1-GCTTAGGC (Motif 5)

A T C G A G T C A G C T G C A T C G T A C A T G T A C G G T A C
Reverse Opposite:
A C T G A T G C G T A C A C G T C G T A T C G A C T A G A T G C
p-value:1e-8
log p-value:-1.851e+01
Information Content per bp:1.806
Number of Target Sequences with motif52.0
Percentage of Target Sequences with motif6.37%
Number of Background Sequences with motif1274.9
Percentage of Background Sequences with motif2.63%
Average Position of motif in Targets107.8 +/- 50.4bp
Average Position of motif in Background101.1 +/- 58.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GCTTAGGC
GGATTAGC-
A C G T A T C G A G T C A G C T G C A T C G T A C A T G T A C G G T A C
T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T

TFAP2A/MA0003.4/Jaspar

Match Rank:2
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GCTTAGGC--
ATTGCCTCAGGCCA
A C G T A C G T A C G T A C G T A T C G A G T C A G C T G C A T C G T A C A T G T A C G G T A C A C G T A C G T
T G C A A G C T C A G T A T C G T G A C A G T C A G C T T A G C T C G A T A C G A T C G T A G C G T A C T G C A

TFAP2C(var.2)/MA0814.2/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GCTTAGGC---
GGGCCTGAGGCGGG
A C G T A C G T A C G T A T C G A G T C A G C T G C A T C G T A C A T G T A C G G T A C A C G T A C G T A C G T
A C T G C A T G A T C G T A G C A T G C A G C T T A C G T G C A T A C G T A C G T A G C A T C G T C A G A T C G

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GCTTAGGC-
AGCCTCAGGCA
A C G T A C G T A T C G A G T C A G C T G C A T C G T A C A T G T A C G G T A C A C G T
G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A

Crx/MA0467.1/Jaspar

Match Rank:5
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GCTTAGGC
AAGAGGATTAG--
A C G T A C G T A C G T A C G T A C G T A T C G A G T C A G C T G C A T C G T A C A T G T A C G G T A C
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GCTTAGGC
GGGATTANN-
A C G T A C G T A T C G A G T C A G C T G C A T C G T A C A T G T A C G G T A C
C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T

EGR2/MA0472.2/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCTTAGGC--
TGCGTGGGCGT
A C G T A T C G A G T C A G C T G C A T C G T A C A T G T A C G G T A C A C G T A C G T
G A C T T C A G G T A C T C A G A C G T T C A G A C T G T C A G G A T C T C A G C A G T

BARHL1/MA0877.2/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GCTTAGGC
NCGTTTAN--
A C G T A C G T A T C G A G T C A G C T G C A T C G T A C A T G T A C G G T A C
G T A C G A T C C T A G G C A T A C G T G C A T C G T A A T C G A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GCTTAGGC
GNGGATTAGN-
A C G T A C G T A C G T A T C G A G T C A G C T G C A T C G T A C A T G T A C G G T A C
C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G A C G T

OTX1/MA0711.1/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GCTTAGGC
CGGATTAN--
A C G T A C G T A T C G A G T C A G C T G C A T C G T A C A T G T A C G G T A C
T A G C T A C G A T C G G T C A A C G T G C A T C G T A C T G A A C G T A C G T