Information for 9-ATAAAACGGC (Motif 29)

C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C A C T G A C G T A C G T A C G T A C G T C G T A A C G T
p-value:1e-3
log p-value:-7.700e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.0 +/- 0.0bp
Average Position of motif in Background47.6 +/- 34.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA13/MA0650.2/Jaspar

Match Rank:1
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----ATAAAACGGC
CCCAATAAAAC---
A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C T G A C T G A G T C
T G A C T A G C A G T C G T C A C G T A A C G T C T G A C T G A C G T A G T C A G T A C A C G T A C G T A C G T

CDX4/MA1473.1/Jaspar

Match Rank:2
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----ATAAAACGGC
GGCAATAAAAC---
A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C T G A C T G A G T C
C A T G T C A G A G T C T G C A C G T A A C G T C G T A C G T A G T C A G T C A A G T C A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:3
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---ATAAAACGGC
GTCATAAAAN---
A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C T G A C T G A G T C
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T

CDX1/MA0878.2/Jaspar

Match Rank:4
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----ATAAAACGGC
GGCCATAAAAC---
A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C T G A C T G A G T C
C A T G C T A G A G T C T G A C C G T A A C G T C T G A C G T A C T G A G T C A A G T C A C G T A C G T A C G T

HOXD13/MA0909.2/Jaspar

Match Rank:5
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----ATAAAACGGC
CCCAATAAAAC---
A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C T G A C T G A G T C
T A G C T A G C A G T C G T C A C T G A C G A T C G T A C T G A G T C A T G C A T G A C A C G T A C G T A C G T

HOXD9/MA0913.2/Jaspar

Match Rank:6
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---ATAAAACGGC
GCAATAAAAC---
A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C T G A C T G A G T C
T C A G A G T C G T C A T C G A C G A T G C T A C G T A C G T A G T C A G A T C A C G T A C G T A C G T

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----ATAAAACGGC
NCYAATAAAA----
A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C T G A C T G A G T C
C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:8
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--ATAAAACGGC---
GTATAAAAGGCGGGG
A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C T G A C T G A G T C A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:9
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--ATAAAACGGC---
GTATAAAAGGCGGGG
A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C T G A C T G A G T C A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---ATAAAACGGC
CYHATAAAAN---
A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A A G T C A C T G A C T G A G T C
T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C A C G T A C G T A C G T