Information for 1-CAATCCGTCA (Motif 1)

A G T C C G T A C G T A A C G T A G T C A G T C A C T G A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A G T C A C T G A C T G C G T A A C G T A C G T A C T G
p-value:1e-4
log p-value:-1.023e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets158.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CAATCCGTCA
YCATCMATCA
A G T C C G T A C G T A A C G T A G T C A G T C A C T G A C G T A G T C C G T A
G A T C G T A C C T G A A C G T G A T C G T C A C T G A A C G T G A T C G C T A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CAATCCGTCA-
GYCATCMATCAT
A C G T A G T C C G T A C G T A A C G T A G T C A G T C A C T G A C G T A G T C C G T A A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

Atf1/MA0604.1/Jaspar

Match Rank:3
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CAATCCGTCA-
---TACGTCAT
A G T C C G T A C G T A A C G T A G T C A G T C A C T G A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A G C T C T G A A G T C A C T G A C G T T G A C C G T A A G C T

JUN::JUNB/MA1132.1/Jaspar

Match Rank:4
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CAATCCGTCA--
--ATGAGTCATC
A G T C C G T A C G T A A C G T A G T C A G T C A C T G A C G T A G T C C G T A A C G T A C G T
A C G T A C G T C T G A C G A T C A T G G T C A T A C G G A C T T G A C G T C A A G C T G T A C

FOSL1::JUND(var.2)/MA1143.1/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CAATCCGTCA-
-GTTACGTCAT
A G T C C G T A C G T A A C G T A G T C A G T C A C T G A C G T A G T C C G T A A C G T
A C G T C T A G G C A T A C G T C T G A G T A C T C A G C A G T T A G C T C G A A G C T

PB0045.1_Myb_1/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CAATCCGTCA----
ATGGAAACCGTTATTTT
A C G T A C G T A C G T A G T C C G T A C G T A A C G T A G T C A G T C A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T
G C T A C G A T C A T G C A T G G T C A C T G A C T G A G T A C A T G C A C T G A C G T G A C T C T G A G C A T G C A T G A C T C G A T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CAATCCGTCA
RGCCATYAATCA
A C G T A C G T A G T C C G T A C G T A A C G T A G T C A G T C A C T G A C G T A G T C C G T A
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A

PB0046.1_Mybl1_1/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CAATCCGTCA----
TTGAAAACCGTTAATTT
A C G T A C G T A C G T A G T C C G T A C G T A A C G T A G T C A G T C A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T
G A C T C G A T C A T G C G T A G C T A C T G A C T G A G T A C A T G C A C T G A C G T G A C T C T G A G C T A G C A T G A C T C G A T

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:9
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CAATCCGTCA
----ACGTCA
A G T C C G T A C G T A A C G T A G T C A G T C A C T G A C G T A G T C C G T A
A C G T A C G T A C G T A C G T C T G A A G T C T C A G A C G T G T A C C G T A

OTX1/MA0711.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CAATCCGTCA
TTAATCCG---
A C G T A G T C C G T A C G T A A C G T A G T C A G T C A C T G A C G T A G T C C G T A
G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G A C G T A C G T A C G T