Information for 11-GGAGCAATTG (Motif 27)

A C T G A C T G C G T A A C T G A G T C C G T A C G T A A C G T A C G T A C T G
Reverse Opposite:
A G T C C G T A C G T A A C G T A C G T A C T G A G T C A C G T A G T C A G T C
p-value:1e-3
log p-value:-7.447e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets160.0 +/- 0.0bp
Average Position of motif in Background96.4 +/- 44.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0173.1_Sox21_2/Jaspar

Match Rank:1
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----GGAGCAATTG---
NNNNNGAACAATTGANN
A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G A G T C C G T A C G T A A C G T A C G T A C T G A C G T A C G T A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

PH0024.1_Dlx5/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GGAGCAATTG------
GGGGTAATTAGCTCTG
A C T G A C T G C G T A A C T G A G T C C G T A C G T A A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A T C G A T C G T C A G T C A G G A C T G T C A C G T A G A C T C A G T C T G A T A C G A G T C A C G T T G A C A C G T A T C G

POL013.1_MED-1/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCAATTG
CGGAGC-----
A C G T A C T G A C T G C G T A A C T G A G T C C G T A C G T A A C G T A C G T A C T G
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GGAGCAATTG
-GAACAATGG
A C T G A C T G C G T A A C T G A G T C C G T A C G T A A C G T A C G T A C T G
A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G

Hmx1/MA0896.1/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GGAGCAATTG------
ACAAGCAATTAATGAAT
A C G T A C T G A C T G C G T A A C T G A G T C C G T A C G T A A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GGAGCAATTG------
ACAAGCAATTAATGAAT
A C G T A C T G A C T G C G T A A C T G A G T C C G T A C G T A A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PB0175.1_Sox4_2/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GGAGCAATTG-------
GGAAAAATTGTTAGGAA
A C T G A C T G C G T A A C T G A G T C C G T A C G T A A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A

PH0007.1_Barx1/Jaspar

Match Rank:8
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GGAGCAATTG----
ATNNACTAATTACTTT
A C G T A C G T A C T G A C T G C G T A A C T G A G T C C G T A C G T A A C G T A C G T A C T G A C G T A C G T A C G T A C G T
C G T A G C A T C A G T G A T C T C G A T A G C G A C T T G C A G T C A A C G T A C G T C T G A A T G C A G C T C A G T C A G T

PB0065.1_Sox15_1/Jaspar

Match Rank:9
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GGAGCAATTG----
TAGTGAACAATAGATTT
A C G T A C G T A C G T A C T G A C T G C G T A A C T G A G T C C G T A C G T A A C G T A C G T A C T G A C G T A C G T A C G T A C G T
G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T

PB0072.1_Sox5_1/Jaspar

Match Rank:10
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GGAGCAATTG---
TTTAGAACAATAAAAT
A C G T A C G T A C G T A C T G A C T G C G T A A C T G A G T C C G T A C G T A A C G T A C G T A C T G A C G T A C G T A C G T
C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T