Information for 15-CTCCTAAAAGAG (Motif 17)

A G T C A C G T A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C T G
Reverse Opposite:
A G T C A C G T A G T C A C G T A C G T A C G T A C G T C G T A A C T G A C T G C G T A A C T G
p-value:1e-4
log p-value:-1.045e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets66.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CTCCTAAAAGAG
GCTCGTAAAAA--
A C G T A G T C A C G T A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C T G
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A A C G T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CTCCTAAAAGAG
AAACCTCGTAAAATTT
A C G T A C G T A C G T A C G T A G T C A C G T A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C T G
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CTCCTAAAAGAG
AAAGCTCGTAAAATTT
A C G T A C G T A C G T A C G T A G T C A C G T A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C T G
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CTCCTAAAAGAG
--CCAAAAATAG
A G T C A C G T A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C T G
A C G T A C G T G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:5
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTCCTAAAAGAG
CCYMATAAAA---
A C G T A G T C A C G T A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C T G
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:6
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CTCCTAAAAGAG-
-KCCAAAAATAGC
A G T C A C G T A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C T G A C G T
A C G T A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C

HOXC10/MA0905.1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTCCTAAAAGAG
GTCGTAAAAT--
A G T C A C G T A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C T G
T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T A C G T A C G T

HOXC9/MA0485.2/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTCCTAAAAGAG
GTCGTAAAAT--
A G T C A C G T A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C T G
T C A G A G C T A G T C C T A G A C G T C G T A C G T A G T C A G C T A G A C T A C G T A C G T

HOXB9/MA1503.1/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTCCTAAAAGAG
GTCGTAAAAT--
A G T C A C G T A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C T G
T C A G A G C T A G T C T C A G A C G T G C T A C G T A G T C A G C T A G A C T A C G T A C G T

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTCCTAAAAGAG
NCYAATAAAA---
A C G T A G T C A C G T A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C T G
C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T