Information for 2-SCCGTAATKK (Motif 4)

A T C G A G T C A G T C A C T G A C G T C G T A C G T A A C G T A C G T A C G T
Reverse Opposite:
G T A C G T A C C G T A A C G T A C G T C G T A A G T C A C T G A C T G A T C G
p-value:1e-9
log p-value:-2.283e+01
Information Content per bp:1.886
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif30.00%
Number of Background Sequences with motif9.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets61.0 +/- 67.2bp
Average Position of motif in Background135.0 +/- 58.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD8/MA0910.2/Jaspar

Match Rank:1
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:SCCGTAATKK-
---GTAATTGC
A T C G A G T C A G T C A C T G A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A C G T G T C A C G T A A C G T A C G T C T A G A G T C

HOXA7/MA1498.1/Jaspar

Match Rank:2
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:SCCGTAATKK-
---GTAATTGC
A T C G A G T C A G T C A C T G A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T C G A C G T G T C A C G T A C G A T A C G T T C A G T A G C

HOXB8/MA1502.1/Jaspar

Match Rank:3
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:SCCGTAATKK-
---NTAATTGC
A T C G A G T C A G T C A C T G A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A C G T G T C A C G T A A C G T A C G T C T A G T G A C

BARX1/MA0875.1/Jaspar

Match Rank:4
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:SCCGTAATKK-
---NTAATTGN
A T C G A G T C A G T C A C T G A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C

BSX/MA0876.1/Jaspar

Match Rank:5
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:SCCGTAATKK-
---NTAATTGG
A T C G A G T C A G T C A C T G A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T A C G T C G T A C G T A A G C T A C G T C T A G A T C G

LHX1/MA1518.1/Jaspar

Match Rank:6
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:SCCGTAATKK-
---NTAATTGN
A T C G A G T C A G T C A C T G A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T C G G C A T T C G A C G T A C G A T A C G T C T A G T A G C

Dlx4/MA0881.1/Jaspar

Match Rank:7
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:SCCGTAATKK-
---NTAATTGN
A T C G A G T C A G T C A C T G A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G C G A T T C G A C G T A C A G T C A G T C T A G A T C G

Dlx3/MA0880.1/Jaspar

Match Rank:8
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:SCCGTAATKK-
---NTAATTGN
A T C G A G T C A G T C A C T G A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G C G A T T C G A C G T A C A G T C A G T C T A G A T C G

DLX6/MA0882.1/Jaspar

Match Rank:9
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:SCCGTAATKK-
---NTAATTGN
A T C G A G T C A G T C A C T G A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G C G A T T C G A C G T A C A G T C A G T C T A G A T C G

DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer

Match Rank:10
Score:0.69
Offset:2
Orientation:forward strand
Alignment:SCCGTAATKK
--SSTAATTA
A T C G A G T C A G T C A C T G A C G T C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A T G C T A C G A G C T T G C A C G T A C G A T A C G T C T G A