Information for 7-TGTCAGACTAGA (Motif 9)

A C G T A C T G A C G T A G T C C G T A A C T G C G T A A G T C A C G T C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T C G T A A C T G A C G T A G T C A C G T A C T G C G T A A G T C C G T A
p-value:1e-4
log p-value:-9.625e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets108.0 +/- 0.0bp
Average Position of motif in Background186.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---TGTCAGACTAGA
AGGTGHCAGACA---
A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C T G C G T A A G T C A C G T C G T A A C T G C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:TGTCAGACTAGA
--BCAGACWA--
A C G T A C T G A C G T A G T C C G T A A C T G C G T A A G T C A C G T C G T A A C T G C G T A
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TGTCAGACTAGA
NTGTCAN------
A C G T A C G T A C T G A C G T A G T C C G T A A C T G C G T A A G T C A C G T C G T A A C T G C G T A
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TGTCAGACTAGA
AGGTGNCAGACAG--
A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C T G C G T A A G T C A C G T C G T A A C T G C G T A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TGTCAGACTAGA
VBTGWCAGCB----
A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C T G C G T A A G T C A C G T C G T A A C T G C G T A
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T A C G T A C G T

GATA1/MA0035.4/Jaspar

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TGTCAGACTAGA-
--NNAGATTAGAN
A C G T A C T G A C G T A G T C C G T A A C T G C G T A A G T C A C G T C G T A A C T G C G T A A C G T
A C G T A C G T C G T A G C A T C G T A C A T G C G T A C G A T G C A T G C T A C A T G C G T A G C T A

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TGTCAGACTAGA
RHTGWCAR------
A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C T G C G T A A G T C A C G T C G T A A C T G C G T A
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TGTCAGACTAGA
TGTCANYT----
A C G T A C T G A C G T A G T C C G T A A C T G C G T A A G T C A C G T C G T A A C T G C G T A
A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TGTCAGACTAGA
CCTGTCAA------
A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C T G C G T A A G T C A C G T C G T A A C T G C G T A
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TGTCAGACTAGA
GCTGTCAA------
A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C T G C G T A A G T C A C G T C G T A A C T G C G T A
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T