Information for 2-AGGACACT (Motif 6)

C G T A A C T G A C T G C G T A A G T C C G T A A T G C A C G T
Reverse Opposite:
C G T A A T C G A C G T A C T G C G A T A G T C A G T C A C G T
p-value:1e-4
log p-value:-9.277e+00
Information Content per bp:1.920
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif30.00%
Number of Background Sequences with motif817.0
Percentage of Background Sequences with motif0.94%
Average Position of motif in Targets99.7 +/- 56.4bp
Average Position of motif in Background96.4 +/- 89.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-AGGACACT
AAGGTCAC-
A C G T C G T A A C T G A C T G C G T A A G T C C G T A A T G C A C G T
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--AGGACACT
TRAGGTCA--
A C G T A C G T C G T A A C T G A C T G C G T A A G T C C G T A A T G C A C G T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer

Match Rank:3
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----AGGACACT
NBYCAAGGTCAC-
A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C T G C G T A A G T C C G T A A T G C A C G T
A T C G A T G C A G C T T A G C T C G A C T G A C T A G A C T G C A G T A T G C C T G A G T A C A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.74
Offset:0
Orientation:forward strand
Alignment:AGGACACT
AGGTCA--
C G T A A C T G A C T G C G T A A G T C C G T A A T G C A C G T
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---AGGACACT
TCAAGGTCAN-
A C G T A C G T A C G T C G T A A C T G A C T G C G T A A G T C C G T A A T G C A C G T
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T

NR1H4/MA1110.1/Jaspar

Match Rank:6
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-AGGACACT--
NAGGTCATTGA
A C G T C G T A A C T G A C T G C G T A A G T C C G T A A T G C A C G T A C G T A C G T
C G A T T C G A C A T G C A T G A C G T G A T C T C G A A G C T G C A T T C A G T G C A

RORA/MA0071.1/Jaspar

Match Rank:7
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----AGGACACT
ATCAAGGTCA--
A C G T A C G T A C G T A C G T C G T A A C T G A C T G C G T A A G T C C G T A A T G C A C G T
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:8
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--AGGACACT
CAAGGHCANV
A C G T A C G T C G T A A C T G A C T G C G T A A G T C C G T A A T G C A C G T
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---AGGACACT
CAAAGGTCAG-
A C G T A C G T A C G T C G T A A C T G A C T G C G T A A G T C C G T A A T G C A C G T
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer

Match Rank:10
Score:0.70
Offset:-6
Orientation:forward strand
Alignment:------AGGACACT
GKBCARAGGTCA--
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C T G C G T A A G T C C G T A A T G C A C G T
T A C G A C T G A G C T G T A C C G T A T C G A C T G A A C T G C A T G A C G T A G T C C G T A A C G T A C G T