Information for 9-TTCAAGCGTAAA (Motif 19)

A C G T A C G T A G T C C G T A C G T A A C T G A G T C A C T G A C G T C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T C G T A A G T C A C T G A G T C A C G T A C G T A C T G C G T A C G T A
p-value:1e-3
log p-value:-8.407e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif7.14%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets109.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX6/MA0069.1/Jaspar

Match Rank:1
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--TTCAAGCGTAAA
AANTCATGCGTGAA
A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A G T C A C T G A C G T C G T A C G T A C G T A
G T C A T C G A A G T C G A C T A T G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A T C G A

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:2
Score:0.68
Offset:-8
Orientation:forward strand
Alignment:--------TTCAAGCGTAAA
NGTGTTCAVTSAAGCGKAAA
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A G T C A C T G A C G T C G T A C G T A C G T A
A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A

FOXF2/MA0030.1/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TTCAAGCGTAAA----
--CAAACGTAAACAAT
A C G T A C G T A G T C C G T A C G T A A C T G A G T C A C T G A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A G T C G T C A G C T A C G T A T A G C C T A G A C G T C G T A C G T A C G T A A G T C C G T A G C T A C G A T

ZNF652/MA1657.1/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TTCAAGCGTAAA-
-GAAAGAGTTAAA
A C G T A C G T A G T C C G T A C G T A A C T G A G T C A C T G A C G T C G T A C G T A C G T A A C G T
A C G T A C T G T C G A T G C A C T G A A T C G C T G A C T A G C G A T A G C T G C T A T G C A G C T A

HOXD12/MA0873.1/Jaspar

Match Rank:5
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TTCAAGCGTAAA--
---AGTCGTAAAAA
A C G T A C G T A G T C C G T A C G T A A C T G A G T C A C T G A C G T C G T A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

PAX1/MA0779.1/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TTCAAGCGTAAA-
NGCANTCATGCGTGACG
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A G T C A C T G A C G T C G T A C G T A C G T A A C G T
C A G T A C T G G T A C C T G A A T C G A G C T T A G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A G T A C T A C G

Nr2e3/MA0164.1/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TTCAAGCGTAAA
--CAAGCTT---
A C G T A C G T A G T C C G T A C G T A A C T G A G T C A C T G A C G T C G T A C G T A C G T A
A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T

ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TTCAAGCGTAAA
NMMNBAAAGGGTTAA
A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A G T C A C T G A C G T C G T A C G T A C G T A
T A C G T G C A G T C A G C A T A C T G T G C A T C G A C T G A C A T G C T A G A C T G C A G T G A C T C G T A G T C A

HOXC12/MA0906.1/Jaspar

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:TTCAAGCGTAAA--
---GGTCGTAAAAA
A C G T A C G T A G T C C G T A C G T A A C T G A G T C A C T G A C G T C G T A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A

HOXC11/MA0651.1/Jaspar

Match Rank:10
Score:0.57
Offset:3
Orientation:forward strand
Alignment:TTCAAGCGTAAA--
---GGTCGTAAAAT
A C G T A C G T A G T C C G T A C G T A A C T G A G T C A C T G A C G T C G T A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T