| p-value: | 1e-3 |
| log p-value: | -7.890e+00 |
| Information Content per bp: | 1.530 |
| Number of Target Sequences with motif | 1.0 |
| Percentage of Target Sequences with motif | 7.14% |
| Number of Background Sequences with motif | 3.0 |
| Percentage of Background Sequences with motif | 0.00% |
| Average Position of motif in Targets | 16.0 +/- 0.0bp |
| Average Position of motif in Background | 92.5 +/- 59.4bp |
| Strand Bias (log2 ratio + to - strand density) | 10.0 |
| Multiplicity (# of sites on avg that occur together) | 1.00 |
| Motif File: | file (matrix) reverse opposite |
| SVG Files for Logos: | forward logo reverse opposite |
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer
| Match Rank: | 1 |
| Score: | 0.68 |
| Offset: | -3 |
| Orientation: | reverse strand |
| Alignment: | ---TCGTGCTGGT NHGTCGTGAYDN- |
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Zic1::Zic2/MA1628.1/Jaspar
| Match Rank: | 2 |
| Score: | 0.67 |
| Offset: | -1 |
| Orientation: | reverse strand |
| Alignment: | -TCGTGCTGGT NNCCTGCTGNG |
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|
GCM1/MA0646.1/Jaspar
| Match Rank: | 3 |
| Score: | 0.65 |
| Offset: | 1 |
| Orientation: | forward strand |
| Alignment: | TCGTGCTGGT-- -CATGCGGGTAC |
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|
PB0206.1_Zic2_2/Jaspar
| Match Rank: | 4 |
| Score: | 0.63 |
| Offset: | -2 |
| Orientation: | reverse strand |
| Alignment: | --TCGTGCTGGT--- TCNCCTGCTGNGNNN |
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|
|
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer
| Match Rank: | 5 |
| Score: | 0.63 |
| Offset: | 1 |
| Orientation: | forward strand |
| Alignment: | TCGTGCTGGT- -CCTGCTGAGH |
|
|
|
PB0205.1_Zic1_2/Jaspar
| Match Rank: | 6 |
| Score: | 0.62 |
| Offset: | -2 |
| Orientation: | reverse strand |
| Alignment: | --TCGTGCTGGT--- TNTCCTGCTGTGNNG |
|
|
|
PB0207.1_Zic3_2/Jaspar
| Match Rank: | 7 |
| Score: | 0.61 |
| Offset: | -2 |
| Orientation: | reverse strand |
| Alignment: | --TCGTGCTGGT--- NNTCCTGCTGTGNNN |
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|
|
GCM2/MA0767.1/Jaspar
| Match Rank: | 8 |
| Score: | 0.61 |
| Offset: | 1 |
| Orientation: | forward strand |
| Alignment: | TCGTGCTGGT- -TATGCGGGTA |
|
|
|
PB0024.1_Gcm1_1/Jaspar
| Match Rank: | 9 |
| Score: | 0.60 |
| Offset: | -2 |
| Orientation: | reverse strand |
| Alignment: | --TCGTGCTGGT---- NNNNATGCGGGTNNNN |
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|
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer
| Match Rank: | 10 |
| Score: | 0.60 |
| Offset: | -2 |
| Orientation: | reverse strand |
| Alignment: | --TCGTGCTGGT CCCCCTGCTGTG |
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