Information for 12-GCTAGTAAAG (Motif 30)

A C T G A G T C A C G T C G T A A C T G A C G T C G T A C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A C G T C G T A A G T C A C G T C G T A A C T G A G T C
p-value:1e-3
log p-value:-7.224e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif23.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.0 +/- 0.0bp
Average Position of motif in Background83.7 +/- 89.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GCTAGTAAAG-
GCTCGTAAAAA
A C T G A G T C A C G T C G T A A C T G A C G T C G T A C G T A C G T A A C T G A C G T
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---GCTAGTAAAG---
AAACCTCGTAAAATTT
A C G T A C G T A C G T A C T G A G T C A C G T C G T A A C T G A C G T C G T A C G T A C G T A A C T G A C G T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

HMBOX1/MA0895.1/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCTAGTAAAG
ACTAGTTAAC
A C T G A G T C A C G T C G T A A C T G A C G T C G T A C G T A C G T A A C T G
T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

PH0068.1_Hoxc13/Jaspar

Match Rank:4
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GCTAGTAAAG---
AAAGCTCGTAAAATTT
A C G T A C G T A C G T A C T G A G T C A C G T C G T A A C T G A C G T C G T A C G T A C G T A A C T G A C G T A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

PH0040.1_Hmbox1/Jaspar

Match Rank:5
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GCTAGTAAAG---
GAAAACTAGTTAACATC
A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A A C T G A C G T C G T A C G T A C G T A A C T G A C G T A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

PH0168.1_Hnf1b/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GCTAGTAAAG----
ANNNCTAGTTAACNGNN
A C G T A C G T A C G T A C T G A G T C A C G T C G T A A C T G A C G T C G T A C G T A C G T A A C T G A C G T A C G T A C G T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCTAGTAAAG-
-CYHATAAAAN
A C T G A G T C A C G T C G T A A C T G A C G T C G T A C G T A C G T A A C T G A C G T
A C G T T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C

HOXC12/MA0906.1/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCTAGTAAAG-
GGTCGTAAAAA
A C T G A G T C A C G T C G T A A C T G A C G T C G T A C G T A C G T A A C T G A C G T
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCTAGTAAAG
NCYAATAAAA
A C T G A G T C A C G T C G T A A C T G A C G T C G T A C G T A C G T A A C T G
C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

Hoxa11/MA0911.1/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCTAGTAAAG--
GGTCGTAAAATT
A C T G A G T C A C G T C G T A A C T G A C G T C G T A C G T A C G T A A C T G A C G T A C G T
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T