Information for 14-GGGTSARRGAMA (Motif 22)

C T A G A C T G C A T G C A G T A T G C C G T A C T A G C T A G A T C G C T G A G T C A C G T A
Reverse Opposite:
A C G T A C G T G A C T A T G C G A T C A G T C C G A T T A C G G T C A G T A C G T A C G A T C
p-value:1e-5
log p-value:-1.263e+01
Information Content per bp:1.690
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif3.51%
Number of Background Sequences with motif718.2
Percentage of Background Sequences with motif1.51%
Average Position of motif in Targets98.7 +/- 58.9bp
Average Position of motif in Background98.5 +/- 59.3bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:1
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GGGTSARRGAMA
AGGTCAAGGTCA
C T A G A C T G C A T G C A G T A T G C C G T A C T A G C T A G A T C G C T G A G T C A C G T A
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GGGTSARRGAMA
AGGTCAAGGTCA
C T A G A C T G C A T G C A G T A T G C C G T A C T A G C T A G A T C G C T G A G T C A C G T A
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GGGTSARRGAMA-
AGGTGNCAGACAG
C T A G A C T G C A T G C A G T A T G C C G T A C T A G C T A G A T C G C T G A G T C A C G T A A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GGGTSARRGAMA
AGGTGHCAGACA
C T A G A C T G C A T G C A G T A T G C C G T A C T A G C T A G A T C G C T G A G T C A C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

RARA::RXRA/MA0159.1/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GGGTSARRGAMA-----
AGGTCACGGAGAGGTCA
C T A G A C T G C A T G C A G T A T G C C G T A C T A G C T A G A T C G C T G A G T C A C G T A A C G T A C G T A C G T A C G T A C G T
C T G A A C T G C A T G A C G T A T G C C T G A A G C T T A C G T C A G C T G A T A C G T C G A A C T G A C T G C A G T A T G C C G T A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GGGTSARRGAMA
AGGTCA------
C T A G A C T G C A T G C A G T A T G C C G T A C T A G C T A G A T C G C T G A G T C A C G T A
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T

NR2C1/MA1535.1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GGGTSARRGAMA
CGAGGTCAC-----
A C G T A C G T C T A G A C T G C A T G C A G T A T G C C G T A C T A G C T A G A T C G C T G A G T C A C G T A
G T A C C T A G T C G A A C T G A C T G A C G T A T G C C T G A G A T C A C G T A C G T A C G T A C G T A C G T

NR4A2::RXRA/MA1147.1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GGGTSARRGAMA--
GGGGTCAATGACCTN
A C G T C T A G A C T G C A T G C A G T A T G C C G T A C T A G C T A G A T C G C T G A G T C A C G T A A C G T A C G T
T C A G T C A G C A T G C A T G A C G T A T G C T C G A G C T A A G C T T C A G T C G A G T A C G T A C A G C T A G T C

PB0153.1_Nr2f2_2/Jaspar

Match Rank:9
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------GGGTSARRGAMA
CGCGCCGGGTCACGTA--
A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C T G C A T G C A G T A T G C C G T A C T A G C T A G A T C G C T G A G T C A C G T A
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GGGTSARRGAMA--
AAGTTCAAGGTCAGC
A C G T C T A G A C T G C A T G C A G T A T G C C G T A C T A G C T A G A T C G C T G A G T C A C G T A A C G T A C G T
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C