Information for 11-CCAAGCTGGCGG (Motif 12)

A G T C A G T C C G T A C G T A A C T G A G T C A C G T A C T G A C T G A G T C A C T G A C T G
Reverse Opposite:
A G T C A G T C A C T G A G T C A G T C C G T A A C T G A G T C A C G T A C G T A C T G A C T G
p-value:1e-5
log p-value:-1.189e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets173.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1(Zf)/Promoter/Homer

Match Rank:1
Score:0.78
Offset:1
Orientation:forward strand
Alignment:CCAAGCTGGCGG-
-CAAGATGGCGGC
A G T C A G T C C G T A C G T A A C T G A G T C A C G T A C T G A C T G A G T C A C T G A C T G A C G T
A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

YY1/MA0095.2/Jaspar

Match Rank:2
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CCAAGCTGGCGG-
-CAAGATGGCGGC
A G T C A G T C C G T A C G T A A C T G A G T C A C G T A C T G A C T G A G T C A C T G A C T G A C G T
A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

ZFP42/MA1651.1/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CCAAGCTGGCGG------
GTTCCAAAATGGCTGCCTCCG
A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C T G A G T C A C G T A C T G A C T G A G T C A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A T C G G C A T G C A T G T A C G T A C C T G A C G T A T C G A C T G A A G C T T A C G A C T G G T A C A C G T A T C G G A T C A G T C G A C T A T G C A T G C T C A G

PB0164.1_Smad3_2/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CCAAGCTGGCGG------
-NAGANTGGCGGGGNGNA
A G T C A G T C C G T A C G T A A C T G A G T C A C G T A C T G A C T G A G T C A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A

YY2/MA0748.2/Jaspar

Match Rank:5
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CCAAGCTGGCGG--
---AGATGGCGGCG
A G T C A G T C C G T A C G T A A C T G A G T C A C G T A C T G A C T G A G T C A C T G A C T G A C G T A C G T
A C G T A C G T A C G T G T C A T A C G T C G A A G C T T A C G C T A G G A T C A T C G T A C G G T A C T A C G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CCAAGCTGGCGG--
DCHCAGCAGGRGGCC
A C G T A G T C A G T C C G T A C G T A A C T G A G T C A C G T A C T G A C T G A G T C A C T G A C T G A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Nr2e3/MA0164.1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCAAGCTGGCGG
-CAAGCTT----
A G T C A G T C C G T A C G T A A C T G A G T C A C G T A C T G A C T G A G T C A C T G A C T G
A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCAAGCTGGCGG
CACAGCAGGGGG
A G T C A G T C C G T A C G T A A C T G A G T C A C G T A C T G A C T G A G T C A C T G A C T G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCAAGCTGGCGG
CHCAGCRGGRGG
A G T C A G T C C G T A C G T A A C T G A G T C A C G T A C T G A C T G A G T C A C T G A C T G
T G A C G T C A A G T C G C T A C T A G A G T C C T G A C A T G A C T G C T A G T A C G T C A G

BHLHE22(var.2)/MA1635.1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CCAAGCTGGCGG
NNCAGCTGNN--
A G T C A G T C C G T A C G T A A C T G A G T C A C G T A C T G A C T G A G T C A C T G A C T G
A T G C T A C G A T G C T C G A A T C G T A G C A G C T T C A G A T G C T A C G A C G T A C G T