Information for 24-ATAGTCTTGAAG (Motif 35)

C G T A A C G T C G T A A C T G A C G T A G T C A C G T A C G T A C T G C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A G T C C G T A C G T A A C T G C G T A A G T C A C G T C G T A A C G T
p-value:1e-3
log p-value:-7.836e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif6.67%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets92.0 +/- 0.0bp
Average Position of motif in Background82.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4/MA1153.1/Jaspar

Match Rank:1
Score:0.58
Offset:2
Orientation:forward strand
Alignment:ATAGTCTTGAAG
--TGTCTAGA--
C G T A A C G T C G T A A C T G A C G T A G T C A C G T A C G T A C T G C G T A C G T A A C T G
A C G T A C G T G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A A C G T A C G T

PH0066.1_Hoxc11/Jaspar

Match Rank:2
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-ATAGTCTTGAAG---
TAAAGTCGTAAAATAG
A C G T C G T A A C G T C G T A A C T G A C G T A G T C A C G T A C G T A C T G C G T A C G T A A C T G A C G T A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

PH0065.1_Hoxc10/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-ATAGTCTTGAAG---
TAAAGTCGTAAAACGT
A C G T C G T A A C G T C G T A A C T G A C G T A G T C A C G T A C G T A C T G C G T A C G T A A C T G A C G T A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

PH0047.1_Hoxa11/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-ATAGTCTTGAAG---
TAAAGTCGTAAAACAT
A C G T C G T A A C G T C G T A A C T G A C G T A G T C A C G T A C G T A C T G C G T A C G T A A C T G A C G T A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

HSF2/MA0770.1/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--ATAGTCTTGAAG
GAANGTTCTAGAA-
A C G T A C G T C G T A A C G T C G T A A C T G A C G T A G T C A C G T A C G T A C T G C G T A C G T A A C T G
T C A G C T G A G C T A G A T C T C A G G C A T C A G T G A T C A G C T T C G A A C T G G T C A G C T A A C G T

HSF1/MA0486.2/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--ATAGTCTTGAAG
GAACGTTCTAGAA-
A C G T A C G T C G T A A C G T C G T A A C T G A C G T A G T C A C G T A C G T A C T G C G T A C G T A A C T G
C T A G G C T A C G T A A G T C T C A G C G A T C A G T A G T C A C G T T C G A A C T G G T C A G C T A A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:7
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:ATAGTCTTGAAG-
-------NGAAGC
C G T A A C G T C G T A A C T G A C G T A G T C A C G T A C G T A C T G C G T A C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---ATAGTCTTGAAG
AAGATATCCTT----
A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C G T A G T C A C G T A C G T A C T G C G T A C G T A A C T G
G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:ATAGTCTTGAAG
-TWGTCTGV---
C G T A A C G T C G T A A C T G A C G T A G T C A C G T A C G T A C T G C G T A C G T A A C T G
A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:ATAGTCTTGAAG
--TGTCTAGACG
C G T A A C G T C G T A A C T G A C G T A G T C A C G T A C G T A C T G C G T A C G T A A C T G
A C G T A C G T C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G