Information for 7-AGGCAGGCTGCC (Motif 8)

C G T A A C T G A C T G A G T C C G T A A C T G A C T G A G T C A C G T A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T A C T G A G T C A G T C A C G T
p-value:1e-4
log p-value:-9.245e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets157.0 +/- 0.0bp
Average Position of motif in Background18.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-AGGCAGGCTGCC-
CTGGCAGNCTGCCA
A C G T C G T A A C T G A C T G A G T C C G T A A C T G A C T G A G T C A C G T A C T G A G T C A G T C A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

NFIX(var.2)/MA1528.1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGGCAGGCTGCC---
GTTGGCACGGTGCCAGG
A C G T A C G T C G T A A C T G A C T G A G T C C G T A A C T G A C T G A G T C A C G T A C T G A G T C A G T C A C G T A C G T A C G T
A T C G G C A T A C G T A C T G A C T G G T A C C T G A A G T C A T C G C A T G G A C T A C T G A G T C A G T C G T C A C T A G A T C G

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AGGCAGGCTGCC---
TTGGCANNNTGCCAAG
A C G T C G T A A C T G A C T G A G T C C G T A A C T G A C T G A G T C A C G T A C T G A G T C A G T C A C G T A C G T A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AGGCAGGCTGCC-
TTGGCATGGTGCCA
A C G T C G T A A C T G A C T G A G T C C G T A A C T G A C T G A G T C A C G T A C T G A G T C A G T C A C G T
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

NFIC(var.2)/MA1527.1/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGGCAGGCTGCC---
GTTGGCACGGTGCCAAC
A C G T A C G T C G T A A C T G A C T G A G T C C G T A A C T G A C T G A G T C A C G T A C T G A G T C A G T C A C G T A C G T A C G T
A T C G G A C T A C G T A C T G A T C G G T A C C T G A A G T C T A C G T C A G G A C T A C T G A T G C G T A C C G T A C T G A A T G C

NFIB/MA1643.1/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AGGCAGGCTGCC-----
TGCCTGGCATTGTGCCAAGCA
A C G T A C G T A C G T A C G T C G T A A C T G A C T G A G T C C G T A A C T G A C T G A G T C A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T
C G A T C T A G A G T C G A T C C A G T A C T G C A T G T G A C G C T A A G C T C A G T T C A G C G A T A C T G A T G C A G T C G T C A C T G A T C A G G A C T G C T A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGGCAGGCTGCC
AAGGCAAGTGT--
A C G T C G T A A C T G A C T G A G T C C G T A A C T G A C T G A G T C A C G T A C T G A G T C A G T C
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:AGGCAGGCTGCC
---TWGTCTGV-
C G T A A C T G A C T G A G T C C G T A A C T G A C T G A G T C A C G T A C T G A G T C A G T C
A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T

ESR2/MA0258.2/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AGGCAGGCTGCC--
AGGNCANNGTGACCT
A C G T C G T A A C T G A C T G A G T C C G T A A C T G A C T G A G T C A C G T A C T G A G T C A G T C A C G T A C G T
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T

ZFP42/MA1651.1/Jaspar

Match Rank:10
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----AGGCAGGCTGCC----
GTTCCAAAATGGCTGCCTCCG
A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C T G A G T C C G T A A C T G A C T G A G T C A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T
A T C G G C A T G C A T G T A C G T A C C T G A C G T A T C G A C T G A A G C T T A C G A C T G G T A C A C G T A T C G G A T C A G T C G A C T A T G C A T G C T C A G