Information for 6-YTSWTRCATATA (Motif 6)

A G C T C A G T A T C G G C T A C G A T C T A G A T G C C G T A A C G T C G T A A C G T T G C A
Reverse Opposite:
A C G T G T C A A C G T T G C A C G A T T A C G A G T C G C T A C G A T A T G C G T C A T C G A
p-value:1e-4
log p-value:-1.010e+01
Information Content per bp:1.616
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif81.82%
Number of Background Sequences with motif16288.7
Percentage of Background Sequences with motif21.89%
Average Position of motif in Targets114.8 +/- 48.8bp
Average Position of motif in Background100.1 +/- 75.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.56
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.66
Offset:3
Orientation:forward strand
Alignment:YTSWTRCATATA-
---ATGMATATDC
A G C T C A G T A T C G G C T A C G A T C T A G A T G C C G T A A C G T C G T A A C G T T G C A A C G T
A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:YTSWTRCATATA--
---AAGGATATNTN
A G C T C A G T A T C G G C T A C G A T C T A G A T G C C G T A A C G T C G T A A C G T T G C A A C G T A C G T
A C G T A C G T A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

Bhlha15/MA0607.1/Jaspar

Match Rank:3
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:YTSWTRCATATA-
-----ACATATGG
A G C T C A G T A T C G G C T A C G A T C T A G A T G C C G T A A C G T C G T A A C G T T G C A A C G T
A C G T A C G T A C G T A C G T A C G T T C G A A G T C C G T A A C G T G T C A A C G T A C T G A T C G

PB0163.1_Six6_2/Jaspar

Match Rank:4
Score:0.60
Offset:2
Orientation:forward strand
Alignment:YTSWTRCATATA-------
--ATGGGATATATCCGCCT
A G C T C A G T A T C G G C T A C G A T C T A G A T G C C G T A A C G T C G T A A C G T T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G C A C G A T A T C G T A C G A C T G T C G A G A C T C T G A A C G T G T C A A G C T G T A C A G T C T C A G G A T C G A T C C A G T

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:5
Score:0.60
Offset:2
Orientation:forward strand
Alignment:YTSWTRCATATA-----
--YATGCATATRCATRT
A G C T C A G T A T C G G C T A C G A T C T A G A T G C C G T A A C G T C G T A A C G T T G C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T

BHLHE22/MA0818.1/Jaspar

Match Rank:6
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:YTSWTRCATATA--
----ANCATATGGT
A G C T C A G T A T C G G C T A C G A T C T A G A T G C C G T A A C G T C G T A A C G T T G C A A C G T A C G T
A C G T A C G T A C G T A C G T C T G A T C G A T G A C C T G A A C G T C T G A G A C T A C T G A C T G A G C T

Atoh1/MA0461.2/Jaspar

Match Rank:7
Score:0.58
Offset:4
Orientation:forward strand
Alignment:YTSWTRCATATA--
----AACATATGTT
A G C T C A G T A T C G G C T A C G A T C T A G A T G C C G T A A C G T C G T A A C G T T G C A A C G T A C G T
A C G T A C G T A C G T A C G T T C G A T G C A T G A C T C G A C A G T G T C A C G A T C A T G A C G T G A C T

PB0198.1_Zfp128_2/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:YTSWTRCATATA--
TGTATATATATACC
A G C T C A G T A T C G G C T A C G A T C T A G A T G C C G T A A C G T C G T A A C G T T G C A A C G T A C G T
C A G T C A T G G C A T C T G A G C A T C T G A G A C T C G T A G A C T C G T A G A C T C G T A T G A C A T G C

BHLHE23/MA0817.1/Jaspar

Match Rank:9
Score:0.58
Offset:3
Orientation:forward strand
Alignment:YTSWTRCATATA---
---AAACATATGTTT
A G C T C A G T A T C G G C T A C G A T C T A G A T G C C G T A A C G T C G T A A C G T T G C A A C G T A C G T A C G T
A C G T A C G T A C G T C G T A T C G A T G C A G T A C C T G A A G C T T G C A G A C T A C T G A C G T G A C T C G A T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:YTSWTRCATATA---
CTCATGAATATTCAT
A G C T C A G T A T C G G C T A C G A T C T A G A T G C C G T A A C G T C G T A A C G T T G C A A C G T A C G T A C G T
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T