Information for 5-CAATTCGTCA (Motif 23)

A G T C C G T A C G T A A C G T A C G T A G T C A C T G A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A G T C A C T G C G T A C G T A A C G T A C G T A C T G
p-value:1e-3
log p-value:-8.729e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets167.0 +/- 0.0bp
Average Position of motif in Background171.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:1
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CAATTCGTCA----
NNAATTAGTCACGGT
A C G T A G T C C G T A C G T A A C G T A C G T A G T C A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T
A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T

PB0108.1_Atf1_2/Jaspar

Match Rank:2
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CAATTCGTCA---
NTTATTCGTCATNC
A C G T A G T C C G T A C G T A A C G T A C G T A G T C A C T G A C G T A G T C C G T A A C G T A C G T A C G T
C A T G G C A T G C A T T C G A G A C T C A G T A G T C T A C G G A C T G A T C T C G A A G C T G A C T A T G C

Atf1/MA0604.1/Jaspar

Match Rank:3
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CAATTCGTCA-
---TACGTCAT
A G T C C G T A C G T A A C G T A C G T A G T C A C T G A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A G C T C T G A A G T C A C T G A C G T T G A C C G T A A G C T

PB0136.1_IRC900814_2/Jaspar

Match Rank:4
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CAATTCGTCA--
ATGGAAAGTCGTAAAA
A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C G T A G T C A C T G A C G T A G T C C G T A A C G T A C G T
C T G A A G C T A C T G C T A G C T G A T C G A G T C A A C T G G A C T A G T C C A T G A C G T C T G A C G T A T C G A G C T A

JUN::JUNB/MA1132.1/Jaspar

Match Rank:5
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CAATTCGTCA--
--ATGAGTCATC
A G T C C G T A C G T A A C G T A C G T A G T C A C T G A C G T A G T C C G T A A C G T A C G T
A C G T A C G T C T G A C G A T C A T G G T C A T A C G G A C T T G A C G T C A A G C T G T A C

FOSL1::JUND(var.2)/MA1143.1/Jaspar

Match Rank:6
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CAATTCGTCA-
-GTTACGTCAT
A G T C C G T A C G T A A C G T A C G T A G T C A C T G A C G T A G T C C G T A A C G T
A C G T C T A G G C A T A C G T C T G A G T A C T C A G C A G T T A G C T C G A A G C T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:7
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CAATTCGTCA
RGCCATYAATCA
A C G T A C G T A G T C C G T A C G T A A C G T A C G T A G T C A C T G A C G T A G T C C G T A
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A

FOSL1::JUND/MA1142.1/Jaspar

Match Rank:8
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CAATTCGTCA--
--ATGAGTCATN
A G T C C G T A C G T A A C G T A C G T A G T C A C T G A C G T A G T C C G T A A C G T A C G T
A C G T A C G T C T G A C A G T C A T G G T C A T A C G G A C T T G A C G T C A A G C T G A T C

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:9
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CAATTCGTCA
----ACGTCA
A G T C C G T A C G T A A C G T A C G T A G T C A C T G A C G T A G T C C G T A
A C G T A C G T A C G T A C G T C T G A A G T C T C A G A C G T G T A C C G T A

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CAATTCGTCA
YCATCMATCA
A G T C C G T A C G T A A C G T A C G T A G T C A C T G A C G T A G T C C G T A
G A T C G T A C C T G A A C G T G A T C G T C A C T G A A C G T G A T C G C T A