Information for 21-GAGAGAGAGAGA (Motif 36)

T C A G C T G A T A C G T C G A T C A G C G T A C T A G C T G A C T A G T C G A A C T G T G C A
Reverse Opposite:
A C G T T G A C A G C T G A T C G A C T G A T C G C A T A G T C A G C T A T G C G A C T A G T C
p-value:1e-3
log p-value:-8.678e+00
Information Content per bp:1.608
Number of Target Sequences with motif89.0
Percentage of Target Sequences with motif7.98%
Number of Background Sequences with motif2598.5
Percentage of Background Sequences with motif5.37%
Average Position of motif in Targets92.3 +/- 49.9bp
Average Position of motif in Background101.9 +/- 57.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM1/MA0508.3/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GAGAGAGAGAGA
NAGAGAAAGNA-
T C A G C T G A T A C G T C G A T C A G C G T A C T A G C T G A C T A G T C G A A C T G T G C A
C T G A C T G A C A T G G C T A C A T G G C T A C G T A G C T A C A T G C G T A C T G A A C G T

Stat2/MA1623.1/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GAGAGAGAGAGA
AGAAACAGAAACT
A C G T T C A G C T G A T A C G T C G A T C A G C G T A C T A G C T G A C T A G T C G A A C T G T G C A
C T G A C T A G C T G A G C T A T C G A T A G C G C T A C T A G T C G A C T G A T C G A T A G C G C A T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GAGAGAGAGAGA
GAAAGTGAAAGT
T C A G C T G A T A C G T C G A T C A G C G T A C T A G C T G A C T A G T C G A A C T G T G C A
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T

PB0140.1_Irf6_2/Jaspar

Match Rank:4
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------GAGAGAGAGAGA
NNNACCGAGAGTNNN---
A C G T A C G T A C G T A C G T A C G T A C G T T C A G C T G A T A C G T C G A T C A G C G T A C T A G C T G A C T A G T C G A A C T G T G C A
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T A C G T A C G T A C G T

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GAGAGAGAGAGA
GAAAGTGAAAGT
T C A G C T G A T A C G T C G A T C A G C G T A C T A G C T G A C T A G T C G A A C T G T G C A
T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T

IRF1/MA0050.2/Jaspar

Match Rank:6
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----GAGAGAGAGAGA----
AAANNGAAAGTGAAAGTAAAN
A C G T A C G T A C G T A C G T A C G T T C A G C T G A T A C G T C G A T C A G C G T A C T A G C T G A C T A G T C G A A C T G T G C A A C G T A C G T A C G T A C G T
C T G A C G T A C T G A T C A G G C A T T C A G C T G A C T G A C G T A T A C G G A C T C T A G T C G A C T G A C G T A T A C G G A C T T C G A T C G A C T G A C T G A

IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GAGAGAGAGAGA
GRAASTGAAAST
T C A G C T G A T A C G T C G A T C A G C G T A C T A G C T G A C T A G T C G A A C T G T G C A
T C A G T C A G G C T A C G T A T A C G G A C T T C A G T C G A C T G A C G T A T A C G G A C T

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:8
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GAGAGAGAGAGA
GAAACTGAAACT
T C A G C T G A T A C G T C G A T C A G C G T A C T A G C T G A C T A G T C G A A C T G T G C A
T C A G C T G A G T C A C G T A A T G C G A C T A T C G G T C A C T G A C T G A T A G C G A C T

IRF2/MA0051.1/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GAGAGAGAGAGA-----
GGAAAGCGAAACCAAAAC
A C G T T C A G C T G A T A C G T C G A T C A G C G T A C T A G C T G A C T A G T C G A A C T G T G C A A C G T A C G T A C G T A C G T A C G T
A T C G C T A G C G T A C G T A C G T A C T A G A G C T A C T G C G T A C G T A C G T A A T C G A G T C C T G A C G T A C G T A G C T A G T A C

PKNOX1/MA0782.2/Jaspar

Match Rank:10
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GAGAGAGAGAGA
TTTGAGTGACAGCTA
A C G T A C G T A C G T T C A G C T G A T A C G T C G A T C A G C G T A C T A G C T G A C T A G T C G A A C T G T G C A
C G A T G C A T C G A T T C A G C T G A A C T G C G A T A T C G C T G A G A T C C G T A A C T G T A G C A G C T C T G A