Information for 12-GAGACATACATT (Motif 15)

A C T G C G T A A C T G C G T A A G T C C G T A A C G T C G T A A G T C C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A A C G T A C T G A C G T C G T A A C G T A C T G A C G T A G T C A C G T A G T C
p-value:1e-3
log p-value:-8.937e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets181.0 +/- 0.0bp
Average Position of motif in Background94.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0028.1_Hbp1_1/Jaspar

Match Rank:1
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GAGACATACATT------
--NNCATTCATTCATNNN
A C T G C G T A A C T G C G T A A G T C C G T A A C G T C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

Foxd3/MA0041.1/Jaspar

Match Rank:2
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GAGACATACATT-
-AAACAAACATTC
A C T G C G T A A C T G C G T A A G T C C G T A A C G T C G T A A G T C C G T A A C G T A C G T A C G T
A C G T C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C

NEUROG2/MA0669.1/Jaspar

Match Rank:3
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GAGACATACATT
--GACATATGTT
A C T G C G T A A C T G C G T A A G T C C G T A A C G T C G T A A G T C C G T A A C G T A C G T
A C G T A C G T C T A G T C G A A G T C C G T A A C G T T G C A A G C T C T A G A C G T A G C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GAGACATACATT
AGGTGHCAGACA--
A C G T A C G T A C T G C G T A A C T G C G T A A G T C C G T A A C G T C G T A A G T C C G T A A C G T A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T

ZNF24/MA1124.1/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GAGACATACATT-
CATTCATTCATTC
A C T G C G T A A C T G C G T A A G T C C G T A A C G T C G T A A G T C C G T A A C G T A C G T A C G T
G A T C T C G A G A C T A G C T G A T C T C G A A G C T A G C T G A T C T C G A G A C T A G C T G A T C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GAGACATACATT
AGGTGNCAGACAG-
A C G T A C G T A C T G C G T A A C T G C G T A A G T C C G T A A C G T C G T A A G T C C G T A A C G T A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GAGACATACATT--
TTGACCTANTTATN
A C T G C G T A A C T G C G T A A G T C C G T A A C G T C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

BATF3/MA0835.2/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GAGACATACATT
NATGAGTCATN----
A C G T A C G T A C G T A C T G C G T A A C T G C G T A A G T C C G T A A C G T C G T A A G T C C G T A A C G T A C G T
C G A T G C T A G C A T C A T G G C T A A T C G C G A T G T A C C G T A C A G T G C T A A C G T A C G T A C G T A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GAGACATACATT
-NTTGATACATT
A C T G C G T A A C T G C G T A A G T C C G T A A C G T C G T A A G T C C G T A A C G T A C G T
A C G T C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T

JDP2/MA0655.1/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GAGACATACATT
ATGAGTCAT-----
A C G T A C G T A C T G C G T A A C T G C G T A A G T C C G T A A C G T C G T A A G T C C G T A A C G T A C G T
C T G A C G A T C A T G G C T A A T C G G C A T T G A C C T G A A G C T A C G T A C G T A C G T A C G T A C G T