Information for 13-CAGACACCAT (Motif 24)

T A G C C G T A A T C G C G T A T A G C G T C A A T G C G A T C C T G A A G C T
Reverse Opposite:
T C G A G A C T C T A G T A C G A C G T A T C G C G A T T A G C C G A T A T C G
p-value:1e-6
log p-value:-1.402e+01
Information Content per bp:1.819
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif4.00%
Number of Background Sequences with motif679.7
Percentage of Background Sequences with motif1.43%
Average Position of motif in Targets102.5 +/- 52.0bp
Average Position of motif in Background98.4 +/- 61.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-CAGACACCAT
CCAGACRSVB-
A C G T T A G C C G T A A T C G C G T A T A G C G T C A A T G C G A T C C T G A A G C T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.72
Offset:-6
Orientation:forward strand
Alignment:------CAGACACCAT-
CAAATCCAGACATCACA
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A T C G C G T A T A G C G T C A A T G C G A T C C T G A A G C T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CAGACACCAT
CCAGACAG---
A C G T T A G C C G T A A T C G C G T A T A G C G T C A A T G C G A T C C T G A A G C T
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CAGACACCAT
BCAGACWA---
A C G T T A G C C G T A A T C G C G T A T A G C G T C A A T G C G A T C C T G A A G C T
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

Smad4/MA1153.1/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CAGACACCAT
TCTAGACA----
A C G T A C G T T A G C C G T A A T C G C G T A T A G C G T C A A T G C G A T C C T G A A G C T
A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T A C G T A C G T A C G T

PH0164.1_Six4/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CAGACACCAT---
ATAAATGACACCTATCA
A C G T A C G T A C G T A C G T T A G C C G T A A T C G C G T A T A G C G T C A A T G C G A T C C T G A A G C T A C G T A C G T A C G T
G C T A C A G T C T G A G T C A G C T A A G C T C A T G G T C A A G T C G T C A G T A C A G T C A G C T G T C A A G C T A G T C T C G A

PB0117.1_Eomes_2/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CAGACACCAT---
NNGGCGACACCTCNNN
A C G T A C G T A C G T T A G C C G T A A T C G C G T A T A G C G T C A A T G C G A T C C T G A A G C T A C G T A C G T A C G T
A T C G T C G A T C A G A T C G T G A C C T A G G C T A A G T C C T G A A T G C A G T C G A C T G A T C A G T C T A C G A G T C

TBX3/MA1566.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CAGACACCAT
NTCACACCTN
T A G C C G T A A T C G C G T A T A G C G T C A A T G C G A T C C T G A A G C T
A G C T G A C T T A G C T C G A A G T C C T G A A T G C A T G C G A C T G A T C

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CAGACACCAT
-TGACACCT-
T A G C C G T A A T C G C G T A T A G C G T C A A T G C G A T C C T G A A G C T
A C G T G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CAGACACCAT
AGGTGHCAGACA----
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A T C G C G T A T A G C G T C A A T G C G A T C C T G A A G C T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T