Information for 5-TCMMACYACTAA (Motif 6)

A C G T A G T C G T A C G T A C C G T A A G T C A G T C C G T A A G T C A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A A C T G A C G T C T A G C T A G A C G T A C T G C A G T A C T G C G T A
p-value:1e-12
log p-value:-2.860e+01
Information Content per bp:1.892
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif11.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets108.8 +/- 56.3bp
Average Position of motif in Background114.7 +/- 74.6bp
Strand Bias (log2 ratio + to - strand density)-1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TCMMACYACTAA
CNGTCACGCCAC---
A C G T A C G T A C G T A C G T A G T C G T A C G T A C C G T A A G T C A G T C C G T A A G T C A C G T C G T A C G T A
G T A C C T A G T C A G A G C T T A G C C G T A A T G C T A C G A G T C G T A C G T C A A G T C A C G T A C G T A C G T

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TCMMACYACTAA
ATCACCCCAT---
A C G T A C G T A G T C G T A C G T A C C G T A A G T C A G T C C G T A A G T C A C G T C G T A C G T A
T C G A G C A T A T G C C T G A A T G C T A G C A G T C G T A C T C G A A G C T A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:3
Score:0.61
Offset:4
Orientation:forward strand
Alignment:TCMMACYACTAA-
----ACCACTTAA
A C G T A G T C G T A C G T A C C G T A A G T C A G T C C G T A A G T C A C G T C G T A C G T A A C G T
A C G T A C G T A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:4
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TCMMACYACTAA-
---AAGCACTTAA
A C G T A G T C G T A C G T A C C G T A A G T C A G T C C G T A A G T C A C G T C G T A C G T A A C G T
A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

Nkx3-2/MA0122.3/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TCMMACYACTAA--
-ATAACCACTTAAA
A C G T A G T C G T A C G T A C C G T A A G T C A G T C C G T A A G T C A C G T C G T A C G T A A C G T A C G T
A C G T C G T A C G A T C G T A C G T A T G A C G A T C G C T A G T A C G C A T G A C T G C T A C G T A G C T A

NKX2-2/MA1645.1/Jaspar

Match Rank:6
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TCMMACYACTAA----
--TAACCACTCAAGAA
A C G T A G T C G T A C G T A C C G T A A G T C A G T C C G T A A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G A C T G C T A C G T A T G A C G A T C G C T A G T A C G C A T A T G C G T C A T C G A T C A G G C T A G C T A

SREBF1/MA0595.1/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TCMMACYACTAA
ATCACCCCAC---
A C G T A C G T A G T C G T A C G T A C C G T A A G T C A G T C C G T A A G T C A C G T C G T A C G T A
T C G A A C G T A G T C C G T A A T G C T A G C A G T C T A G C C G T A A G T C A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:8
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TCMMACYACTAA-
---MRSCACTYAA
A C G T A G T C G T A C G T A C C G T A A G T C A G T C C G T A A G T C A C G T C G T A C G T A A C G T
A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

TBX18/MA1565.1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TCMMACYACTAA
NTTCACACCTCC--
A C G T A C G T A C G T A G T C G T A C G T A C C G T A A G T C A G T C C G T A A G T C A C G T C G T A C G T A
A G C T G A C T G C A T A T G C G T C A A G T C C T G A A G T C A G T C A G C T G A T C G A T C A C G T A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TCMMACYACTAA-----
CATAACCACTTAACAAC
A C G T A G T C G T A C G T A C C G T A A G T C A G T C C G T A A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C