Information for 11-CTGCCCCACTTA (Motif 13)

A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T C G T A
Reverse Opposite:
A C G T C G T A C G T A A C T G A C G T A C T G A C T G A C T G A C T G A G T C C G T A A C T G
p-value:1e-3
log p-value:-9.045e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets195.0 +/- 0.0bp
Average Position of motif in Background38.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3-1/MA0124.2/Jaspar

Match Rank:1
Score:0.72
Offset:4
Orientation:forward strand
Alignment:CTGCCCCACTTA-
----ACCACTTAA
A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CTGCCCCACTTA-----
CTTAACCACTTAAGGAT
A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

RORC/MA1151.1/Jaspar

Match Rank:3
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CTGCCCCACTTA-
-TGACCTANTTAN
A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T C G T A A C G T
A C G T G A C T T C A G T G C A G A T C G T A C A G C T T G C A T A G C G C A T C G A T G C T A G A C T

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:4
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CTGCCCCACTTA
BTGACCTAVTTW
A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T C G T A
A G T C A C G T T C A G T C G A A G T C A G T C A G C T C T G A T C A G C G A T G C A T G C A T

NKX2-3/MA0672.1/Jaspar

Match Rank:5
Score:0.67
Offset:4
Orientation:forward strand
Alignment:CTGCCCCACTTA--
----ACCACTTGAA
A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

PH0004.1_Nkx3-2/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CTGCCCCACTTA-----
CATAACCACTTAACAAC
A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

Wt1/MA1627.1/Jaspar

Match Rank:7
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CTGCCCCACTTA
CCCCTCCCCCACAC-
A C G T A C G T A C G T A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T C G T A
G A T C A G T C G T A C T A G C C A G T A T G C A G T C A G T C G T A C A T G C C T G A A T G C T G C A A G T C A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CTGCCCCACTTA--
TTGACCTANTTATN
A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T C G T A A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:9
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CTGCCCCACTTA
NNHYTGACCTAGWTT
A C G T A C G T A C G T A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T C G T A
A C G T G A T C G A C T G A T C A C G T A C T G T C G A A G T C A G T C A G C T C T G A T C A G C G A T C G A T G C A T

ISL2/MA0914.1/Jaspar

Match Rank:10
Score:0.66
Offset:5
Orientation:forward strand
Alignment:CTGCCCCACTTA-
-----GCACTTAA
A G T C A C G T A C T G A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A