| p-value: | 1e-6 |
| log p-value: | -1.496e+01 |
| Information Content per bp: | 1.937 |
| Number of Target Sequences with motif | 3.0 |
| Percentage of Target Sequences with motif | 33.33% |
| Number of Background Sequences with motif | 128.8 |
| Percentage of Background Sequences with motif | 0.16% |
| Average Position of motif in Targets | 130.0 +/- 67.2bp |
| Average Position of motif in Background | 99.5 +/- 77.5bp |
| Strand Bias (log2 ratio + to - strand density) | -1.0 |
| Multiplicity (# of sites on avg that occur together) | 1.00 |
| Motif File: | file (matrix) reverse opposite |
| SVG Files for Logos: | forward logo reverse opposite |
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer
| Match Rank: | 1 |
| Score: | 0.73 |
| Offset: | 1 |
| Orientation: | reverse strand |
| Alignment: | TCTTGATGGCCG -GTTAATGGCC- |
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Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer
| Match Rank: | 2 |
| Score: | 0.70 |
| Offset: | 1 |
| Orientation: | reverse strand |
| Alignment: | TCTTGATGGCCG -TTTNATTGCY- |
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PH0056.1_Hoxa9/Jaspar
| Match Rank: | 3 |
| Score: | 0.65 |
| Offset: | -4 |
| Orientation: | reverse strand |
| Alignment: | ----TCTTGATGGCCG- ANTAATTTTATGGCCGN |
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Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer
| Match Rank: | 4 |
| Score: | 0.64 |
| Offset: | 1 |
| Orientation: | reverse strand |
| Alignment: | TCTTGATGGCCG -TTTCATKGCC- |
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|
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer
| Match Rank: | 5 |
| Score: | 0.63 |
| Offset: | 1 |
| Orientation: | forward strand |
| Alignment: | TCTTGATGGCCG -TTTTATGGCM- |
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Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer
| Match Rank: | 6 |
| Score: | 0.63 |
| Offset: | 1 |
| Orientation: | reverse strand |
| Alignment: | TCTTGATGGCCG -TTTTATGGCB- |
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|
|
PH0134.1_Pbx1/Jaspar
| Match Rank: | 7 |
| Score: | 0.63 |
| Offset: | -4 |
| Orientation: | reverse strand |
| Alignment: | ----TCTTGATGGCCG- NNNNNATTGATGNGTGN |
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|
YY2/MA0748.2/Jaspar
| Match Rank: | 8 |
| Score: | 0.62 |
| Offset: | 3 |
| Orientation: | forward strand |
| Alignment: | TCTTGATGGCCG-- ---AGATGGCGGCG |
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CDX1/MA0878.2/Jaspar
| Match Rank: | 9 |
| Score: | 0.60 |
| Offset: | 0 |
| Orientation: | reverse strand |
| Alignment: | TCTTGATGGCCG GTTTTATGGCC- |
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CDX4/MA1473.1/Jaspar
| Match Rank: | 10 |
| Score: | 0.58 |
| Offset: | 0 |
| Orientation: | reverse strand |
| Alignment: | TCTTGATGGCCG GTTTTATTGCC- |
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