Information for 4-CATACAGCGA (Motif 12)

A G T C C G T A A C G T C G T A A G T C C G T A A C T G A G T C A C T G C G T A
Reverse Opposite:
A C G T A G T C A C T G A G T C A C G T A C T G A C G T C G T A A C G T A C T G
p-value:1e-3
log p-value:-8.405e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif7.14%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets103.0 +/- 0.0bp
Average Position of motif in Background154.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0158.1_Rhox11_2/Jaspar

Match Rank:1
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CATACAGCGA---
TCNCTTTACAGCGNNNT
A C G T A C G T A C G T A C G T A G T C C G T A A C G T C G T A A G T C C G T A A C T G A G T C A C T G C G T A A C G T A C G T A C G T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T

Rhox11/MA0629.1/Jaspar

Match Rank:2
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CATACAGCGA---
TCNNTTTACAGCGNNNT
A C G T A C G T A C G T A C G T A G T C C G T A A C G T C G T A A G T C C G T A A C T G A G T C A C T G C G T A A C G T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

PH0157.1_Rhox11_1/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CATACAGCGA---
TCNNTTTACAGCGNNNT
A C G T A C G T A C G T A C G T A G T C C G T A A C G T C G T A A G T C C G T A A C T G A G T C A C T G C G T A A C G T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CATACAGCGA---
-RHHCAGAGAGGB
A G T C C G T A A C G T C G T A A G T C C G T A A C T G A G T C A C T G C G T A A C G T A C G T A C G T
A C G T T C A G G T C A G C T A A G T C C G T A A T C G T C G A T C A G C G T A A C T G A C T G A C T G

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CATACAGCGA
--CACAGN--
A G T C C G T A A C G T C G T A A G T C C G T A A C T G A G T C A C T G C G T A
A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CATACAGCGA
----CAGCC-
A G T C C G T A A C G T C G T A A G T C C G T A A C T G A G T C A C T G C G T A
A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CATACAGCGA
CCAGACAG---
A C G T A G T C C G T A A C G T C G T A A G T C C G T A A C T G A G T C A C T G C G T A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:8
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----CATACAGCGA
ATTTGCATACAATGG
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T C G T A A G T C C G T A A C T G A G T C A C T G C G T A
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CATACAGCGA--
TCNCCTGCTGNGNNN
A C G T A C G T A C G T A G T C C G T A A C G T C G T A A G T C C G T A A C T G A G T C A C T G C G T A A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CATACAGCGA
CCAGACRSVB-
A C G T A G T C C G T A A C G T C G T A A G T C C G T A A C T G A G T C A C T G C G T A
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T