Information for 18-AGATATACATAG (Motif 27)

C T G A A C T G C G T A C A G T C T G A A G C T C T G A A G T C C G T A A C G T C T G A C T A G
Reverse Opposite:
A G T C A G C T T C G A C G A T A C T G A G C T T C G A A G C T G T C A G A C T G T A C A G C T
p-value:1e-5
log p-value:-1.298e+01
Information Content per bp:1.758
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.09%
Number of Background Sequences with motif224.5
Percentage of Background Sequences with motif0.47%
Average Position of motif in Targets102.4 +/- 59.4bp
Average Position of motif in Background94.1 +/- 59.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0148.1_Pou3f3/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGATATACATAG----
AAAATATGCATAATAAA
A C G T C T G A A C T G C G T A C A G T C T G A A G C T C T G A A G T C C G T A A C G T C T G A C T A G A C G T A C G T A C G T A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

POU5F1B/MA0792.1/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AGATATACATAG
--ATTTGCATA-
C T G A A C T G C G T A C A G T C T G A A G C T C T G A A G T C C G T A A C G T C T G A C T A G
A C G T A C G T G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AGATATACATAG
--ATTTGCATA-
C T G A A C T G C G T A C A G T C T G A A G C T C T G A A G T C C G T A A C G T C T G A C T A G
A C G T A C G T G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A A C G T

Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AGATATACATAG
-GATTTGCATA-
C T G A A C T G C G T A C A G T C T G A A G C T C T G A A G T C C G T A A C G T C T G A C T A G
A C G T A C T G G T C A A C G T G C A T C G A T T C A G G T A C G T C A A C G T C T G A A C G T

FOXB1/MA0845.1/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGATATACATAG
ATATTTACATA-
C T G A A C T G C G T A C A G T C T G A A G C T C T G A A G T C C G T A A C G T C T G A C T A G
C G T A G A C T T C G A C G A T C G A T A C G T C T G A G A T C G C T A G A C T C G T A A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGATATACATAG
GHATATKCAT--
C T G A A C T G C G T A C A G T C T G A A G C T C T G A A G T C C G T A A C G T C T G A C T A G
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:7
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----AGATATACATAG
AYATGYATATGCATR-
A C G T A C G T A C G T A C G T C T G A A C T G C G T A C A G T C T G A A G C T C T G A A G T C C G T A A C G T C T G A C T A G
C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGATATACATAG
AAGATATCCTT--
A C G T C T G A A C T G C G T A C A G T C T G A A G C T C T G A A G T C C G T A A C G T C T G A C T A G
G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T A C G T A C G T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGATATACATAG-
-GCTAAAAATAGC
C T G A A C T G C G T A C A G T C T G A A G C T C T G A A G T C C G T A A C G T C T G A C T A G A C G T
A C G T A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C

MEF2B/MA0660.1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGATATACATAG-
-GCTATAAATAGC
C T G A A C T G C G T A C A G T C T G A A G C T C T G A A G T C C G T A A C G T C T G A C T A G A C G T
A C G T C T A G G T A C A G C T C G T A G C A T C G T A G C T A C G T A A C G T G C T A T C A G G T A C