Information for 7-RTGATGGA (Motif 28)

C T A G A G C T A T C G G C T A A G C T C A T G A T C G G T C A
Reverse Opposite:
A C G T T A G C G T A C T C G A C G A T T A G C C T G A G A T C
p-value:1e-3
log p-value:-8.316e+00
Information Content per bp:1.622
Number of Target Sequences with motif213.0
Percentage of Target Sequences with motif20.31%
Number of Background Sequences with motif7805.4
Percentage of Background Sequences with motif16.18%
Average Position of motif in Targets95.5 +/- 51.2bp
Average Position of motif in Background100.1 +/- 60.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.23
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:RTGATGGA----
ATGATKGATGRC
C T A G A G C T A T C G G C T A A G C T C A T G A T C G G T C A A C G T A C G T A C G T A C G T
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:2
Score:0.75
Offset:1
Orientation:forward strand
Alignment:RTGATGGA---
-TGATKGATGR
C T A G A G C T A T C G G C T A A G C T C A T G A T C G G T C A A C G T A C G T A C G T
A C G T C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-RTGATGGA-
NATGTTGCAA
A C G T C T A G A G C T A T C G G C T A A G C T C A T G A T C G G T C A A C G T
C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:4
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:RTGATGGA--
ATGATGCAAT
C T A G A G C T A T C G G C T A A G C T C A T G A T C G G T C A A C G T A C G T
T G C A A G C T A C T G C G T A A G C T C A T G G A T C T G C A C G T A A G C T

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:5
Score:0.73
Offset:0
Orientation:forward strand
Alignment:RTGATGGA--
MTGATGCAAT
C T A G A G C T A T C G G C T A A G C T C A T G A T C G G T C A A C G T A C G T
T G C A A G C T C A T G C G T A A G C T A C T G G A T C G T C A C G T A A G C T

ATF4/MA0833.2/Jaspar

Match Rank:6
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--RTGATGGA----
AAATGATGCAATAA
A C G T A C G T C T A G A G C T A T C G G C T A A G C T C A T G A T C G G T C A A C G T A C G T A C G T A C G T
C T G A C T G A T C G A G C A T C A T G C T G A A G C T C T A G G A T C G T C A C G T A A G C T G T C A G C T A

CEBPG(var.2)/MA1636.1/Jaspar

Match Rank:7
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--RTGATGGA-----
AAATGATGCAATCAT
A C G T A C G T C T A G A G C T A T C G G C T A A G C T C A T G A T C G G T C A A C G T A C G T A C G T A C G T A C G T
C G T A C G T A T C G A C G A T C A T G C T G A G A C T C T A G G T A C G T C A C G T A A G C T G T A C G C T A G A C T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-RTGATGGA---
GRTGMTRGAGCC
A C G T C T A G A G C T A T C G G C T A A G C T C A T G A T C G G T C A A C G T A C G T A C G T
A T C G T C G A G A C T A T C G T G A C A C G T C T A G A C T G C G T A A C T G A G T C G T A C

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:9
Score:0.67
Offset:0
Orientation:forward strand
Alignment:RTGATGGA----
RTGATTKATRGN
C T A G A G C T A T C G G C T A A G C T C A T G A T C G G T C A A C G T A C G T A C G T A C G T
C T G A C G A T C T A G C G T A A G C T C G A T C A G T C T G A G A C T C T A G C T A G A T G C

PBX1/MA0070.1/Jaspar

Match Rank:10
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-RTGATGGA---
TTTGATTGATGN
A C G T C T A G A G C T A T C G G C T A A G C T C A T G A T C G G T C A A C G T A C G T A C G T
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G