Information for 2-AACCGATTAG (Motif 3)

C G T A C G T A A G T C A G T C A C T G C G T A A C G T A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A C G T A A C G T A G T C A C T G A C T G A C G T A C G T
p-value:1e-4
log p-value:-9.768e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets7.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

VENTX/MA0724.1/Jaspar

Match Rank:1
Score:0.86
Offset:1
Orientation:forward strand
Alignment:AACCGATTAG
-ACCGATTAG
C G T A C G T A A G T C A G T C A C T G C G T A A C G T A C G T C G T A A C T G
A C G T C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G

PAX7/MA0680.1/Jaspar

Match Rank:2
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-AACCGATTAG
TAATCGATTA-
A C G T C G T A C G T A A G T C A G T C A C T G C G T A A C G T A C G T C G T A A C T G
C G A T T G C A G T C A G A C T A G T C T C A G C G T A C G A T G A C T G C T A A C G T

PB0135.1_Hoxa3_2/Jaspar

Match Rank:3
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--AACCGATTAG--
AAAAACCATTAAGG
A C G T A C G T C G T A C G T A A G T C A G T C A C T G C G T A A C G T A C G T C G T A A C T G A C G T A C G T
T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

PAX3/MA0780.1/Jaspar

Match Rank:4
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-AACCGATTAG
TAATCGATTA-
A C G T C G T A C G T A A G T C A G T C A C T G C G T A A C G T A C G T C G T A A C T G
C G A T T C G A G T C A A G C T A G T C T C A G C T G A A C G T G A C T G C T A A C G T

PH0005.1_Barhl1/Jaspar

Match Rank:5
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---AACCGATTAG---
AACAACCAATTAATTC
A C G T A C G T A C G T C G T A C G T A A G T C A G T C A C T G C G T A A C G T A C G T C G T A A C T G A C G T A C G T A C G T
G T C A C T G A G T A C T C G A C T G A A T G C G A T C C T G A G C T A A C G T G A C T C G T A C T G A A C G T C G A T G A T C

OTX1/MA0711.1/Jaspar

Match Rank:6
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:AACCGATTAG
--CGGATTAN
C G T A C G T A A G T C A G T C A C T G C G T A A C G T A C G T C G T A A C T G
A C G T A C G T T A G C T A C G A T C G G T C A A C G T G C A T C G T A C T G A

BARHL2/MA0635.1/Jaspar

Match Rank:7
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:AACCGATTAG-
-ANCGTTTANN
C G T A C G T A A G T C A G T C A C T G C G T A A C G T A C G T C G T A A C T G A C G T
A C G T C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C

BARHL1/MA0877.2/Jaspar

Match Rank:8
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:AACCGATTAG
--NCGTTTAN
C G T A C G T A A G T C A G T C A C T G C G T A A C G T A C G T C G T A A C T G
A C G T A C G T G T A C G A T C C T A G G C A T A C G T G C A T C G T A A T C G

BSX/MA0876.1/Jaspar

Match Rank:9
Score:0.70
Offset:2
Orientation:forward strand
Alignment:AACCGATTAG
--CCAATTAA
C G T A C G T A A G T C A G T C A C T G C G T A A C G T A C G T C G T A A C T G
A C G T A C G T T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A

PH0006.1_Barhl2/Jaspar

Match Rank:10
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---AACCGATTAG---
AAAAACCAATTAAGAA
A C G T A C G T A C G T C G T A C G T A A G T C A G T C A C T G C G T A A C G T A C G T C G T A A C T G A C G T A C G T A C G T
G T C A G T C A G T C A C T G A T C G A G A T C A G T C C T G A G C T A A C G T A C G T C G T A C T G A A T C G G C T A G C T A