Information for 16-GTAATAAGAGAT (Motif 16)

A C T G A C G T C G T A C G T A A C G T C G T A C G T A A C T G C G T A A C T G C G T A A C G T
Reverse Opposite:
C G T A A C G T A G T C A C G T A G T C A C G T A C G T C G T A A C G T A C G T C G T A A G T C
p-value:1e-4
log p-value:-1.039e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets136.0 +/- 0.0bp
Average Position of motif in Background55.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD3/MA0912.2/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GTAATAAGAGAT
GTAATTAG----
A C T G A C G T C G T A C G T A A C G T C G T A C G T A A C T G C G T A A C T G C G T A A C G T
T A C G A G C T G T C A C G T A A C G T A C G T C T G A T C A G A C G T A C G T A C G T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GTAATAAGAGAT
GWAAYHTGAKMC
A C T G A C G T C G T A C G T A A C G T C G T A C G T A A C T G C G T A A C T G C G T A A C G T
C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GTAATAAGAGAT
GTCATAAAAN--
A C T G A C G T C G T A C G T A A C G T C G T A C G T A A C T G C G T A A C T G C G T A A C G T
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GTAATAAGAGAT
GWAAYHTGABMC
A C T G A C G T C G T A C G T A A C G T C G T A C G T A A C T G C G T A A C T G C G T A A C G T
A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

LBX1/MA0618.1/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GTAATAAGAGAT
TTAATTAG----
A C T G A C G T C G T A C G T A A C G T C G T A C G T A A C T G C G T A A C T G C G T A A C G T
C G A T A G C T C G T A C G T A A G C T C G A T C T G A A T C G A C G T A C G T A C G T A C G T

HOXD9/MA0913.2/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GTAATAAGAGAT
GCAATAAAAC--
A C T G A C G T C G T A C G T A A C G T C G T A C G T A A C T G C G T A A C T G C G T A A C G T
T C A G A G T C G T C A T C G A C G A T G C T A C G T A C G T A G T C A G A T C A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GTAATAAGAGAT
GGTAATAAAAA--
A C G T A C T G A C G T C G T A C G T A A C G T C G T A C G T A A C T G C G T A A C T G C G T A A C G T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T A C G T

POU6F1(var.2)/MA1549.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GTAATAAGAGAT
ATAATGAGGT--
A C T G A C G T C G T A C G T A A C G T C G T A C G T A A C T G C G T A A C T G C G T A A C G T
C T G A G A C T T C G A C G T A A C G T A C T G G C T A A C T G T A C G C G A T A C G T A C G T

PB0106.1_Arid5a_2/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GTAATAAGAGAT--
CATACAATACGAAATAA
A C G T A C G T A C G T A C T G A C G T C G T A C G T A A C G T C G T A C G T A A C T G C G T A A C T G C G T A A C G T A C G T A C G T
A T G C C T A G G A C T C G T A T G A C C G T A T G C A A C G T T G C A T A G C T A C G C T G A C T G A C G T A A G C T T C G A T C G A

CDX4/MA1473.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GTAATAAGAGAT
GGCAATAAAAC--
A C G T A C T G A C G T C G T A C G T A A C G T C G T A C G T A A C T G C G T A A C T G C G T A A C G T
C A T G T C A G A G T C T G C A C G T A A C G T C G T A C G T A G T C A G T C A A G T C A C G T A C G T