Information for 17-GCAATAAGGG (Motif 36)

A C T G A G T C C G T A C G T A A C G T C G T A C G T A A C T G A C T G A C T G
Reverse Opposite:
A G T C A G T C A G T C A C G T A C G T C G T A A C G T A C G T A C T G A G T C
p-value:1e-3
log p-value:-7.000e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif13.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets104.0 +/- 0.0bp
Average Position of motif in Background102.0 +/- 64.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.2/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GCAATAAGGG
AAGCAATAAAAA
A C G T A C G T A C T G A G T C C G T A C G T A A C G T C G T A C G T A A C T G A C T G A C T G
C T G A C G T A C T A G G A T C G T C A C T G A A G C T C G T A C G T A G C T A C G T A G C T A

PB0128.1_Gcm1_2/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GCAATAAGGG-----
TGCGCATAGGGGAGGAG
A C G T A C G T A C T G A G T C C G T A C G T A A C G T C G T A C G T A A C T G A C T G A C T G A C G T A C G T A C G T A C G T A C G T
C G A T C A T G A T G C T A C G G T A C T C G A A G C T T C G A C A T G A C T G A C T G A C T G T C G A A T C G T C A G G T C A A C T G

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCAATAAGGG
RGCAATNAAA-
A C G T A C T G A G T C C G T A C G T A A C G T C G T A C G T A A C T G A C T G A C T G
C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A A C G T

LHX1/MA1518.1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCAATAAGGG
GCAATTAC--
A C T G A G T C C G T A C G T A A C G T C G T A C G T A A C T G A C T G A C T G
A T C G G A T C T G C A G C T A A C G T A G C T C G T A T A G C A C G T A C G T

EN2/MA0642.1/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCAATAAGGG
CCCAATTAGC-
A C G T A C T G A G T C C G T A C G T A A C G T C G T A C G T A A C T G A C T G A C T G
T A G C A T G C A G T C T G C A T G C A A C G T A G C T C T G A T A C G A T G C A C G T

HOXA6/MA1497.1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCAATAAGGG
GGTAATTAAC-
A C G T A C T G A G T C C G T A C G T A A C G T C G T A C G T A A C T G A C T G A C T G
A C T G A T C G A G C T G T C A T C G A A C G T C G A T C G T A C T G A A T G C A C G T

CDX4/MA1473.1/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCAATAAGGG
GGCAATAAAAC
A C G T A C T G A G T C C G T A C G T A A C G T C G T A C G T A A C T G A C T G A C T G
C A T G T C A G A G T C T G C A C G T A A C G T C G T A C G T A G T C A G T C A A G T C

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCAATAAGGG
BCMATTAG--
A C T G A G T C C G T A C G T A A C G T C G T A C G T A A C T G A C T G A C T G
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T

Msx3/MA0709.1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCAATAAGGG
CCAATTAA--
A C T G A G T C C G T A C G T A A C G T C G T A C G T A A C T G A C T G A C T G
T A G C G A T C T C G A T G C A A C G T G A C T C G T A T C G A A C G T A C G T

HOXB7/MA1501.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCAATAAGGG
GGTAATTAAC-
A C G T A C T G A G T C C G T A C G T A A C G T C G T A C G T A A C T G A C T G A C T G
T C A G A C T G A G C T G T C A G T C A A C G T G C A T C T G A T C G A T A G C A C G T