Information for 3-TAGCTAGCCAGC (Motif 3)

A C G T C G T A A T C G A G T C A C G T C G T A A C T G A G T C A G T C C G T A A T C G G T A C
Reverse Opposite:
A C T G A T G C A C G T A C T G A C T G A G T C A C G T G T C A A C T G A T G C A C G T C G T A
p-value:1e-9
log p-value:-2.284e+01
Information Content per bp:1.893
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets142.0 +/- 43.4bp
Average Position of motif in Background89.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL006.1_BREu/Jaspar

Match Rank:1
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TAGCTAGCCAGC
-AGCGCGCC---
A C G T C G T A A T C G A G T C A C G T C G T A A C T G A G T C A G T C C G T A A T C G G T A C
A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T A C G T

Smad4/MA1153.1/Jaspar

Match Rank:2
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TAGCTAGCCAGC
--TCTAGACA--
A C G T C G T A A T C G A G T C A C G T C G T A A C T G A G T C A G T C C G T A A T C G G T A C
A C G T A C G T A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.57
Offset:3
Orientation:forward strand
Alignment:TAGCTAGCCAGC
---CGTGCCAAG
A C G T C G T A A T C G A G T C A C G T C G T A A C T G A G T C A G T C C G T A A T C G G T A C
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TAGCTAGCCAGC
---BCAGACWA-
A C G T C G T A A T C G A G T C A C G T C G T A A C T G A G T C A G T C C G T A A T C G G T A C
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:5
Score:0.56
Offset:5
Orientation:forward strand
Alignment:TAGCTAGCCAGC-
-----TGCCAGCB
A C G T C G T A A T C G A G T C A C G T C G T A A C T G A G T C A G T C C G T A A T C G G T A C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C T A G A T G C A G T C G T C A T A C G A T G C A T C G

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TAGCTAGCCAGC
----CAGCC---
A C G T C G T A A T C G A G T C A C G T C G T A A C T G A G T C A G T C C G T A A T C G G T A C
A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T

HMBOX1/MA0895.1/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--TAGCTAGCCAGC
GTTAACTAGN----
A C G T A C G T A C G T C G T A A T C G A G T C A C G T C G T A A C T G A G T C A G T C C G T A A T C G G T A C
A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T A C G T A C G T A C G T A C G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:8
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---TAGCTAGCCAGC
TGTTKCCTAGCAACM
A C G T A C G T A C G T A C G T C G T A A T C G A G T C A C G T C G T A A C T G A G T C A G T C C G T A A T C G G T A C
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

SMAD5/MA1557.1/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:forward strand
Alignment:TAGCTAGCCAGC
TGTCTAGACA--
A C G T C G T A A T C G A G T C A C G T C G T A A C T G A G T C A G T C C G T A A T C G G T A C
G A C T T C A G C A G T T G A C A C G T T G C A T A C G G T C A G A T C G C T A A C G T A C G T

PB0155.1_Osr2_2/Jaspar

Match Rank:10
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----TAGCTAGCCAGC
NNTGTAGGTAGCANNT
A C G T A C G T A C G T A C G T A C G T C G T A A T C G A G T C A C G T C G T A A C T G A G T C A G T C C G T A A T C G G T A C
A C T G C T A G C G A T C A T G A G C T C G T A C T A G A C T G C G A T C T G A T A C G A G T C C T G A C T G A C T A G G A C T