Information for 1-AGSCAAGGCAAY (Motif 1)

C T G A A C T G A T G C G T A C C G T A C G T A A C T G C A T G A G T C G C T A C G T A G A T C
Reverse Opposite:
C T A G G A C T C G A T C T A G G A T C T G A C C G A T C G A T A C T G T A C G G T A C A G C T
p-value:1e-7
log p-value:-1.717e+01
Information Content per bp:1.663
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif55.56%
Number of Background Sequences with motif1081.1
Percentage of Background Sequences with motif1.24%
Average Position of motif in Targets117.4 +/- 50.3bp
Average Position of motif in Background97.2 +/- 77.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RFX3/MA0798.2/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AGSCAAGGCAAY--
TNCCATAGCAACNN
C T G A A C T G A T G C G T A C C G T A C G T A A C T G C A T G A G T C G C T A C G T A G A T C A C G T A C G T
G A C T C A T G A G T C G A T C G T C A A G C T C T G A C T A G G A T C C T G A T C G A G A T C T G A C T C A G

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AGSCAAGGCAAY-
TTGCCATGGCAACN
A C G T C T G A A C T G A T G C G T A C C G T A C G T A A C T G C A T G A G T C G C T A C G T A G A T C A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

RFX1/MA0509.2/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGSCAAGGCAAY--
TNCCATAGCAACNN
C T G A A C T G A T G C G T A C C G T A C G T A A C T G C A T G A G T C G C T A C G T A G A T C A C G T A C G T
G A C T C A T G A G T C G A T C G T C A G A C T T C G A C T A G G A T C C T G A T C G A G A T C G T C A T C A G

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AGSCAAGGCAAY-
TTGCCATGGCAACC
A C G T C T G A A C T G A T G C G T A C C G T A C G T A A C T G C A T G A G T C G C T A C G T A G A T C A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:5
Score:0.61
Offset:3
Orientation:forward strand
Alignment:AGSCAAGGCAAY-
---CAAGGHCANV
C T G A A C T G A T G C G T A C C G T A C G T A A C T G C A T G A G T C G C T A C G T A G A T C A C G T
A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AGSCAAGGCAAY--
GTTGCCATGGCAACCG
A C G T A C G T C T G A A C T G A T G C G T A C C G T A C G T A A C T G C A T G A G T C G C T A C G T A G A T C A C G T A C G T
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGSCAAGGCAAY
AAGGCAAGTGT--
A C G T C T G A A C T G A T G C G T A C C G T A C G T A A C T G C A T G A G T C G C T A C G T A G A T C
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T

NR5A1/MA1540.1/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AGSCAAGGCAAY
-GTCAAGGTCAC
C T G A A C T G A T G C G T A C C G T A C G T A A C T G C A T G A G T C G C T A C G T A G A T C
A C G T A C T G G A C T A T G C C T G A C G T A A C T G A C T G G A C T A G T C C T G A G A T C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AGSCAAGGCAAY
BCAGACWA------
A C G T A C G T C T G A A C T G A T G C G T A C C G T A C G T A A C T G C A T G A G T C G C T A C G T A G A T C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AGSCAAGGCAAY
KGTTGCCATGGCAAC
A C G T A C G T A C G T C T G A A C T G A T G C G T A C C G T A C G T A A C T G C A T G A G T C G C T A C G T A G A T C
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C