Information for 17-GGGATAGACACA (Motif 24)

A C T G A C T G A C T G C G T A A C G T C G T A A C T G C G T A A G T C C G T A A G T C C G T A
Reverse Opposite:
A C G T C T A G A C G T A C T G A C G T A G T C A C G T C G T A A C G T A G T C G T A C A G T C
p-value:1e-5
log p-value:-1.164e+01
Information Content per bp:1.961
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.33%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets104.3 +/- 49.3bp
Average Position of motif in Background78.9 +/- 52.1bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)3.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GGGATAGACACA
AGGTGHCAGACA--
A C G T A C G T A C T G A C T G A C T G C G T A A C G T C G T A A C T G C G T A A G T C C G T A A G T C C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GGGATAGACACA
AGGTGNCAGACAG-
A C G T A C G T A C T G A C T G A C T G C G T A A C G T C G T A A C T G C G T A A G T C C G T A A G T C C G T A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

ZSCAN29/MA1602.1/Jaspar

Match Rank:3
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GGGATAGACACA
NCNGTGTAGACG--
A C G T A C G T A C T G A C T G A C T G C G T A A C G T C G T A A C T G C G T A A G T C C G T A A G T C C G T A
A T G C G A T C A G T C T A C G A G C T C T A G C A G T C T G A A C T G T C G A A G T C T C A G A C G T A C G T

Smad4/MA1153.1/Jaspar

Match Rank:4
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GGGATAGACACA
--TCTAGACA--
A C T G A C T G A C T G C G T A A C G T C G T A A C T G C G T A A G T C C G T A A G T C C G T A
A C G T A C G T A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T A C G T

PB0098.1_Zfp410_1/Jaspar

Match Rank:5
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------GGGATAGACACA
TATTATGGGATGGATAA-
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C T G C G T A A C G T C G T A A C T G C G T A A G T C C G T A A G T C C G T A
C G A T T C G A C A G T C G A T G T C A C G A T C A T G C A T G C A T G C T G A C A G T C T A G A C T G T G C A C A G T C G T A T G C A A C G T

PB0163.1_Six6_2/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GGGATAGACACA---
ATGGGATATATCCGCCT
A C G T A C G T A C T G A C T G A C T G C G T A A C G T C G T A A C T G C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C G T
T G C A C G A T A T C G T A C G A C T G T C G A G A C T C T G A A C G T G T C A A G C T G T A C A G T C T C A G G A T C G A T C C A G T

SMAD5/MA1557.1/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GGGATAGACACA
TGTCTAGACA--
A C T G A C T G A C T G C G T A A C G T C G T A A C T G C G T A A G T C C G T A A G T C C G T A
G A C T T C A G C A G T T G A C A C G T T G C A T A C G G T C A G A T C G C T A A C G T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GGGATAGACACA
CGTCTAGACA--
A C T G A C T G A C T G C G T A A C G T C G T A A C T G C G T A A G T C C G T A A G T C C G T A
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T A C G T

FOXL1/MA0033.2/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GGGATAGACACA
---GTAAACA--
A C T G A C T G A C T G C G T A A C G T C G T A A C T G C G T A A G T C C G T A A G T C C G T A
A C G T A C G T A C G T C T A G G A C T T G C A G T C A T G C A A G T C G T C A A C G T A C G T

PB0016.1_Foxj1_1/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GGGATAGACACA----
AAAGTAAACAAAAATT
A C T G A C T G A C T G C G T A A C G T C G T A A C T G C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T
G C T A C G A T G C T A C T A G G A C T G T C A G C T A C G T A G A T C C G T A G T C A C G T A G T C A C G T A C A G T C A G T