Information for 21-CAGTAGGGTC (Motif 40)

A G T C C G T A A C T G A C G T C G T A A C T G A C T G A C T G A C G T A G T C
Reverse Opposite:
A C T G C G T A A G T C A G T C A G T C A C G T C G T A A G T C A C G T A C T G
p-value:1e-3
log p-value:-7.061e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif13.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets72.0 +/- 0.0bp
Average Position of motif in Background93.7 +/- 67.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer

Match Rank:1
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----CAGTAGGGTC
GCACAYAGTAGGKCY
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C G T C G T A A C T G A C T G A C T G A C G T A G T C
C T A G G A T C T C G A A T G C T C G A A G C T C T G A A C T G A C G T C T G A A C T G A C T G A C G T A G T C G A T C

ZKSCAN1/MA1585.1/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CAGTAGGGTC
ATAGTAGGTG-
A C G T A G T C C G T A A C T G A C G T C G T A A C T G A C T G A C T G A C G T A G T C
T C G A A G C T T G C A C T A G A C G T G T C A A T C G C A T G A G C T T A C G A C G T

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CAGTAGGGTC
CACAGCAGGGG-
A C G T A C G T A G T C C G T A A C T G A C G T C G T A A C T G A C T G A C T G A C G T A G T C
T A G C T C G A A G T C T G C A T A C G A G T C T C G A A T C G A C T G T A C G T C A G A C G T

LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer

Match Rank:4
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CAGTAGGGTC--
--NRRGGGTCTT
A G T C C G T A A C T G A C G T C G T A A C T G A C T G A C T G A C G T A G T C A C G T A C G T
A C G T A C G T A C T G T C G A C T A G A C T G A C T G A C T G A C G T A G T C A C G T A G C T

PB0157.1_Rara_2/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CAGTAGGGTC-----
AGAGCGGGGTCAAGTA
A C G T A G T C C G T A A C T G A C G T C G T A A C T G A C T G A C T G A C G T A G T C A C G T A C G T A C G T A C G T A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

OSR1/MA1542.1/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CAGTAGGGTC
NACAGTAGCN--
A C G T A C G T A G T C C G T A A C T G A C G T C G T A A C T G A C T G A C T G A C G T A G T C
G T C A T C G A G A T C T C G A A C T G C G A T C T G A C T A G A G T C C T G A A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CAGTAGGGTC
CACAGCAGGGGG
A C G T A C G T A G T C C G T A A C T G A C G T C G T A A C T G A C T G A C T G A C G T A G T C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic2/MA1629.1/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CAGTAGGGTC
CTCACAGCAGGGGG
A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C G T C G T A A C T G A C T G A C T G A C G T A G T C
T G A C C A G T T G A C G C T A T A G C G T C A T A C G A G T C C T G A C A T G A T C G C T A G T C A G T C A G

NR2C1/MA1535.1/Jaspar

Match Rank:9
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CAGTAGGGTC--
---CGAGGTCAC
A G T C C G T A A C T G A C G T C G T A A C T G A C T G A C T G A C G T A G T C A C G T A C G T
A C G T A C G T A C G T G T A C C T A G T C G A A C T G A C T G A C G T A T G C C T G A G A T C

MYB/MA0100.3/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CAGTAGGGTC
NNCAGTTGNN--
A C G T A C G T A G T C C G T A A C T G A C G T C G T A A C T G A C T G A C T G A C G T A G T C
C A T G C T G A A G T C T G C A A C T G C G A T G A C T T C A G T C A G C A G T A C G T A C G T