Information for 1-GAGTGATG (Motif 5)

A C T G C G T A A C T G C G A T A C T G C T G A A C G T A C T G
Reverse Opposite:
A G T C C G T A A G C T A G T C C G T A A G T C A C G T A G T C
p-value:1e-6
log p-value:-1.410e+01
Information Content per bp:1.923
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif720.2
Percentage of Background Sequences with motif1.03%
Average Position of motif in Targets84.5 +/- 61.7bp
Average Position of motif in Background99.6 +/- 67.6bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GAGTGATG
TTRAGTGSYK
A C G T A C G T A C T G C G T A A C T G C G A T A C T G C T G A A C G T A C T G
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

MEIS1(var.2)/MA1639.1/Jaspar

Match Rank:2
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGATG--
NNTGATTGATGNN
A C G T A C G T A C G T A C T G C G T A A C T G C G A T A C T G C T G A A C G T A C T G A C G T A C G T
C G T A C G T A C G A T C A T G C G T A C G A T C A G T C A T G G T C A G A C T C T A G C T G A G A T C

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:3
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GAGTGATG-
TGATKGATGR
A C G T A C T G C G T A A C T G C G A T A C T G C T G A A C G T A C T G A C G T
C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G

PBX1/MA0070.1/Jaspar

Match Rank:4
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGATG-
TTTGATTGATGN
A C G T A C G T A C G T A C T G C G T A A C T G C G A T A C T G C T G A A C G T A C T G A C G T
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:5
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GAGTGATG-
TGATTGATGA
A C G T A C T G C G T A A C T G C G A T A C T G C T G A A C G T A C T G A C G T
C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

NKX2-5/MA0063.2/Jaspar

Match Rank:6
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----GAGTGATG
NNTTGAGTGNN-
A C G T A C G T A C G T A C G T A C T G C G T A A C T G C G A T A C T G C T G A A C G T A C T G
C G A T A G C T C G A T G C A T C T A G C G T A C T A G G A C T C T A G A C T G A G C T A C G T

NKX2-2/MA1645.1/Jaspar

Match Rank:7
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----GAGTGATG-
NNNTTGAGTGGNNN
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G C G A T A C T G C T G A A C G T A C T G A C G T
C G A T C G A T A G T C A G C T C A G T T A C G C G T A C A T G C G A T C T A G A C T G G C A T C G A T C T G A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:8
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGATG--
ATGATKGATGRC
A C G T A C G T A C T G C G T A A C T G C G A T A C T G C T G A A C G T A C T G A C G T A C G T
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGATG
TTGAGTGSTT
A C G T A C G T A C T G C G T A A C T G C G A T A C T G C T G A A C G T A C T G
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:10
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGATG
CTTGAGTGGCT
A C G T A C G T A C G T A C T G C G T A A C T G C G A T A C T G C T G A A C G T A C T G
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T