Information for 2-CAGTATGATTCC (Motif 2)

A G T C C G T A C T A G A C G T C G T A C G A T C T A G G T C A C G A T A C G T A T G C A G T C
Reverse Opposite:
C T A G A T C G G T C A C G T A A C G T A G T C C G T A A C G T C G T A A G T C A C G T A C T G
p-value:1e-6
log p-value:-1.528e+01
Information Content per bp:1.799
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif18.75%
Number of Background Sequences with motif43.3
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets103.3 +/- 48.0bp
Average Position of motif in Background108.0 +/- 49.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13/MA0901.2/Jaspar

Match Rank:1
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CAGTATGATTCC
AACCAATAAAATTT-
A C G T A C G T A C G T A G T C C G T A C T A G A C G T C G T A C G A T C T A G G T C A C G A T A C G T A T G C A G T C
C G T A C G T A G T A C G A T C G C T A C G T A A C G T C G T A G C T A G C T A G C T A G C A T G C A T G C A T A C G T

Sox1/MA0870.1/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CAGTATGATTCC-
AACAATAACATTGTT
A C G T A C G T A G T C C G T A C T A G A C G T C G T A C G A T C T A G G T C A C G A T A C G T A T G C A G T C A C G T
T G C A G C T A A G T C G T C A G T C A C G A T C G T A T C G A A T G C C G T A A C G T A G C T A C T G G A C T A G C T

PH0078.1_Hoxd13/Jaspar

Match Rank:3
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CAGTATGATTCC
CTACCAATAAAATTCT
A C G T A C G T A C G T A C G T A G T C C G T A C T A G A C G T C G T A C G A T C T A G G T C A C G A T A C G T A T G C A G T C
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

PH0057.1_Hoxb13/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CAGTATGATTCC
AACCCAATAAAATTCG
A C G T A C G T A C G T A C G T A G T C C G T A C T A G A C G T C G T A C G A T C T A G G T C A C G A T A C G T A T G C A G T C
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

ZBTB32/MA1580.1/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CAGTATGATTCC
TGTACAGTAT------
A C G T A C G T A C G T A C G T A G T C C G T A C T A G A C G T C G T A C G A T C T A G G T C A C G A T A C G T A T G C A G T C
G C A T C T A G C G A T G T C A A T G C C G T A A C T G A G C T C T G A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

CDX2/MA0465.2/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CAGTATGATTCC
AAGCAATAAAAA---
A C G T A C G T A C G T A G T C C G T A C T A G A C G T C G T A C G A T C T A G G T C A C G A T A C G T A T G C A G T C
C T G A C G T A C T A G G A T C G T C A C T G A A G C T C G T A C G T A G C T A C G T A G C T A A C G T A C G T A C G T

IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:7
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CAGTATGATTCC
CTTTCANTATGACTV-
A C G T A C G T A C G T A C G T A G T C C G T A C T A G A C G T C G T A C G A T C T A G G T C A C G A T A C G T A T G C A G T C
A T G C G A C T A G C T A G C T A G T C G C T A C A G T C G A T G C T A A C G T A C T G G C T A T A G C G C A T T G A C A C G T

PB0079.1_Sry_1/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CAGTATGATTCC-
NANTATTATAATTNNN
A C G T A C G T A C G T A G T C C G T A C T A G A C G T C G T A C G A T C T A G G T C A C G A T A C G T A T G C A G T C A C G T
A C T G G C T A G C T A G A C T C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T G T C A C G A T T G C A

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CAGTATGATTCC
GAATATTCAT--
A G T C C G T A C T A G A C G T C G T A C G A T C T A G G T C A C G A T A C G T A T G C A G T C
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T

SOX21/MA0866.1/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CAGTATGATTCC-
AACACTACCATTGTT
A C G T A C G T A G T C C G T A C T A G A C G T C G T A C G A T C T A G G T C A C G A T A C G T A T G C A G T C A C G T
T C G A G T C A G A T C G C T A G T A C A G C T C T G A G T A C G T A C G T C A A G C T A G C T T A C G A G C T G A C T