Information for 12-CTGATTTATGTA (Motif 15)

A G T C A C G T A C T G C G T A A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A
Reverse Opposite:
A C G T C G T A A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C C G T A A C T G
p-value:1e-3
log p-value:-9.020e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets18.0 +/- 0.0bp
Average Position of motif in Background74.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX2/MA1113.2/Jaspar

Match Rank:1
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-CTGATTTATGTA
NNTGATTTATGNN
A C G T A G T C A C G T A C T G C G T A A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A
C G T A C T G A C G A T C T A G C G T A C G A T C G A T C A G T T C G A G A C T C A T G C T G A A G T C

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:2
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--CTGATTTATGTA-
AAATGATTTATGGCT
A C G T A C G T A G T C A C G T A C T G C G T A A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A C G T
C T G A C G T A C G T A C G A T C T A G C G T A C G A T C G A T C A G T T C G A A G C T C A T G C T A G A G T C G A C T

MEIS1(var.2)/MA1639.1/Jaspar

Match Rank:3
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-CTGATTTATGTA
NNTGATTGATGNN
A C G T A G T C A C G T A C T G C G T A A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A
C G T A C G T A C G A T C A T G C G T A C G A T C A G T C A T G G T C A G A C T C T A G C T G A G A T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:4
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:CTGATTTATGTA-
-TGATTTATGGCC
A G T C A C G T A C T G C G T A A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A C G T
A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:5
Score:0.73
Offset:0
Orientation:forward strand
Alignment:CTGATTTATGTA
RTGATTKATRGN
A G T C A C G T A C T G C G T A A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A
C T G A C G A T C T A G C G T A A G C T C G A T C A G T C T G A G A C T C T A G C T A G A T G C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:6
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:CTGATTTATGTA
-TGATTGATGA-
A G T C A C G T A C T G C G T A A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A
A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:7
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CTGATTTATGTA-
-TGAATTATGCAT
A G T C A C G T A C T G C G T A A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A C G T
A C G T C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:8
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CTGATTTATGTA
-TGATKGATGR-
A G T C A C G T A C T G C G T A A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A
A C G T C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G A C G T

PB0176.1_Sox5_2/Jaspar

Match Rank:9
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CTGATTTATGTA-
NNCTNAATTATGANN
A C G T A C G T A G T C A C G T A C T G C G T A A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A C G T
G A C T G A T C A T G C A C G T G C A T C T G A C G T A C G A T A C G T G T C A G A C T T C A G G C T A C G A T G C T A

PB0144.1_Lef1_2/Jaspar

Match Rank:10
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CTGATTTATGTA-
NNANTGATTGATNTTN
A C G T A C G T A C G T A G T C A C G T A C T G C G T A A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A C G T
G C A T C G T A T C G A C A T G G A C T C T A G G T C A G A C T C G A T T A C G C G T A C G A T A T G C A G C T G C A T A T G C