Information for 19-ATGCAATTAAAG (Motif 27)

C G T A A C G T A C T G A G T C C G T A C G T A A C G T A C G T C G T A C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C T G A G T C C G T A A C G T
p-value:1e-3
log p-value:-8.604e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets6.0 +/- 0.0bp
Average Position of motif in Background163.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hmx1/MA0896.1/Jaspar

Match Rank:1
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--ATGCAATTAAAG---
ACAAGCAATTAATGAAT
A C G T A C G T C G T A A C G T A C T G A G T C C G T A C G T A A C G T A C G T C G T A C G T A C G T A A C T G A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:2
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--ATGCAATTAAAG---
ACAAGCAATTAATGAAT
A C G T A C G T C G T A A C G T A C T G A G T C C G T A C G T A A C G T A C G T C G T A C G T A C G T A A C T G A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

Hmx2/MA0897.1/Jaspar

Match Rank:3
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--ATGCAATTAAAG---
ACAAGCAATTAAAGAAT
A C G T A C G T C G T A A C G T A C T G A G T C C G T A C G T A A C G T A C G T C G T A C G T A C G T A A C T G A C G T A C G T A C G T
T C G A T A G C T G C A C T G A T C A G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A T C A G T C G A C T G A C A G T

PH0042.1_Hmx2/Jaspar

Match Rank:4
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--ATGCAATTAAAG---
ACAAGCAATTAAAGAAT
A C G T A C G T C G T A A C G T A C T G A G T C C G T A C G T A A C G T A C G T C G T A C G T A C G T A A C T G A C G T A C G T A C G T
T C G A T A G C T G C A C T G A T C A G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A T C A G T C G A C T G A C A G T

Hmx3/MA0898.1/Jaspar

Match Rank:5
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--ATGCAATTAAAG---
ACAAGCAATTAAAGAAT
A C G T A C G T C G T A A C G T A C T G A G T C C G T A C G T A A C G T A C G T C G T A C G T A C G T A A C T G A C G T A C G T A C G T
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T

PH0043.1_Hmx3/Jaspar

Match Rank:6
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--ATGCAATTAAAG---
ACAAGCAATTAAAGAAT
A C G T A C G T C G T A A C G T A C T G A G T C C G T A C G T A A C G T A C G T C G T A C G T A C G T A A C T G A C G T A C G T A C G T
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T

LHX2/MA0700.2/Jaspar

Match Rank:7
Score:0.73
Offset:0
Orientation:forward strand
Alignment:ATGCAATTAAAG
AACCAATTAAT-
C G T A A C G T A C T G A G T C C G T A C G T A A C G T A C G T C G T A C G T A C G T A A C T G
C G T A C G T A A T G C G A T C G C T A G C T A C G A T C G A T G C T A C G T A G C A T A C G T

HOXD9/MA0913.2/Jaspar

Match Rank:8
Score:0.72
Offset:2
Orientation:forward strand
Alignment:ATGCAATTAAAG
--GCAATAAAAC
C G T A A C G T A C T G A G T C C G T A C G T A A C G T A C G T C G T A C G T A C G T A A C T G
A C G T A C G T T C A G A G T C G T C A T C G A C G A T G C T A C G T A C G T A G T C A G A T C

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:9
Score:0.72
Offset:1
Orientation:forward strand
Alignment:ATGCAATTAAAG
-NGCAATTAAA-
C G T A A C G T A C T G A G T C C G T A C G T A A C G T A C G T C G T A C G T A C G T A A C T G
A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T

Msx3/MA0709.1/Jaspar

Match Rank:10
Score:0.71
Offset:2
Orientation:forward strand
Alignment:ATGCAATTAAAG
--CCAATTAA--
C G T A A C G T A C T G A G T C C G T A C G T A A C G T A C G T C G T A C G T A C G T A A C T G
A C G T A C G T T A G C G A T C T C G A T G C A A C G T G A C T C G T A T C G A A C G T A C G T