Information for 3-GAAACGCACG (Motif 16)

A C T G C G T A C G T A C G T A A G T C A C T G A G T C C G T A A G T C A C T G
Reverse Opposite:
A G T C A C T G A C G T A C T G A G T C A C T G A C G T A C G T A C G T A G T C
p-value:1e-3
log p-value:-8.460e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets167.0 +/- 0.0bp
Average Position of motif in Background51.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GAAACGCACG-
AGAAACGAAAGT
A C G T A C T G C G T A C G T A C G T A A G T C A C T G A G T C C G T A A G T C A C T G A C G T
T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:2
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:GAAACGCACG---
-----GCACGTAY
A C T G C G T A C G T A C G T A A G T C A C T G A G T C C G T A A G T C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T

HIF1A/MA1106.1/Jaspar

Match Rank:3
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GAAACGCACG---
---NNGCACGTNC
A C T G C G T A C G T A C G T A A G T C A C T G A G T C C G T A A G T C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T T A C G T A C G C A T G A G T C T C G A A G T C C T A G G A C T T C G A A T G C

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:4
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:GAAACGCACG---
-----GCACGTNC
A C T G C G T A C G T A C G T A A G T C A C T G A G T C C G T A A G T C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:5
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GAAACGCACG--
----BGCACGTA
A C T G C G T A C G T A C G T A A G T C A C T G A G T C C G T A A G T C A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:6
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GAAACGCACG---
---TBGCACGCAA
A C T G C G T A C G T A C G T A A G T C A C T G A G T C C G T A A G T C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:7
Score:0.58
Offset:5
Orientation:forward strand
Alignment:GAAACGCACG-----
-----GCACGTACCC
A C T G C G T A C G T A C G T A A G T C A C T G A G T C C G T A A G T C A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

SOHLH2/MA1560.1/Jaspar

Match Rank:8
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GAAACGCACG----
----CGCACGTGCA
A C T G C G T A C G T A C G T A A G T C A C T G A G T C C G T A A G T C A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C A C T G G A T C C T G A A T G C C A T G G A C T C T A G T G A C T C G A

PB0037.1_Isgf3g_1/Jaspar

Match Rank:9
Score:0.58
Offset:-7
Orientation:forward strand
Alignment:-------GAAACGCACG
CAAAATCGAAACTAA--
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G T A A G T C A C T G A G T C C G T A A G T C A C T G
T G A C C T G A C T G A C G T A G C T A G C A T A G T C C T A G G T C A C G T A G C T A T A G C G A C T C G T A G C T A A C G T A C G T

Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GAAACGCACG----
--NHRTCACGACDN
A C T G C G T A C G T A C G T A A G T C A C T G A G T C C G T A A G T C A C T G A C G T A C G T A C G T A C G T
A C G T A C G T T C A G G C T A T C A G C A G T T G A C G T C A A G T C A T C G T G C A G T A C C A G T G A T C