Information for 8-GTCTCCACTTAG (Motif 8)

A C T G A C G T A G T C A C G T A G T C A G T C C G T A A G T C A C G T A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A C G T A A C T G A C G T A C T G A C T G C G T A A C T G C G T A A G T C
p-value:1e-4
log p-value:-9.751e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets72.0 +/- 0.0bp
Average Position of motif in Background26.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3-1/MA0124.2/Jaspar

Match Rank:1
Score:0.70
Offset:3
Orientation:forward strand
Alignment:GTCTCCACTTAG
---ACCACTTAA
A C T G A C G T A G T C A C G T A G T C A G T C C G T A A G T C A C G T A C G T C G T A A C T G
A C G T A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A

PH0004.1_Nkx3-2/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GTCTCCACTTAG----
CATAACCACTTAACAAC
A C G T A C T G A C G T A G T C A C G T A G T C A G T C C G T A A G T C A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GTCTCCACTTAG----
CTTAACCACTTAAGGAT
A C G T A C T G A C G T A G T C A C G T A G T C A G T C C G T A A G T C A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

ISL2/MA0914.1/Jaspar

Match Rank:4
Score:0.66
Offset:4
Orientation:forward strand
Alignment:GTCTCCACTTAG
----GCACTTAA
A C T G A C G T A G T C A C G T A G T C A G T C C G T A A G T C A C G T A C G T C G T A A C T G
A C G T A C G T A C G T A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A

Nkx3-2/MA0122.3/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GTCTCCACTTAG-
ATAACCACTTAAA
A C T G A C G T A G T C A C G T A G T C A G T C C G T A A G T C A C G T A C G T C G T A A C T G A C G T
C G T A C G A T C G T A C G T A T G A C G A T C G C T A G T A C G C A T G A C T G C T A C G T A G C T A

ZNF354C/MA0130.1/Jaspar

Match Rank:6
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GTCTCCACTTAG
--ATCCAC----
A C T G A C G T A G T C A C G T A G T C A G T C C G T A A G T C A C G T A C G T C G T A A C T G
A C G T A C G T T G C A G C A T A G T C A G T C C G T A A T G C A C G T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GTCTCCACTTAG
--MRSCACTYAA
A C T G A C G T A G T C A C G T A G T C A G T C C G T A A G T C A C G T A C G T C G T A A C T G
A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

NKX2-3/MA0672.1/Jaspar

Match Rank:8
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GTCTCCACTTAG-
---ACCACTTGAA
A C T G A C G T A G T C A C G T A G T C A G T C C G T A A G T C A C G T A C G T C G T A A C T G A C G T
A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:9
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----GTCTCCACTTAG
NTNNCGTATCCAAGTNN
A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T A G T C A G T C C G T A A G T C A C G T A C G T C G T A A C T G
C G T A C G A T G C A T A T G C A T G C C T A G G A C T G T C A C G A T A G T C A G T C C T G A G T C A T A C G A G C T T G C A T A C G

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:10
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:GTCTCCACTTAG
----BCMATTAG
A C T G A C G T A G T C A C G T A G T C A G T C C G T A A G T C A C G T A C G T C G T A A C T G
A C G T A C G T A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G