Information for 5-GACAHTAABCAH (Motif 5)

A T C G C G T A G T A C C G T A G A C T A C G T C T G A C G T A A C G T A T G C C G T A G C T A
Reverse Opposite:
C A G T A C G T A T C G T C G A A C G T A G C T C G T A C G T A A C G T A C T G C G A T A T G C
p-value:1e-4
log p-value:-1.113e+01
Information Content per bp:1.723
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1055.2
Percentage of Background Sequences with motif0.91%
Average Position of motif in Targets123.0 +/- 28.9bp
Average Position of motif in Background100.8 +/- 84.6bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GACAHTAABCAH
RGCCATYAATCA-
A C G T A T C G C G T A G T A C C G T A G A C T A C G T C T G A C G T A A C G T A T G C C G T A G C T A
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:2
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GACAHTAABCAH
-TCATCAATCA-
A T C G C G T A G T A C C G T A G A C T A C G T C T G A C G T A A C G T A T G C C G T A G C T A
A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T

PH0150.1_Pou4f3/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GACAHTAABCAH---
AGTTATTAATGAGGTC
A C G T A T C G C G T A G T A C C G T A G A C T A C G T C T G A C G T A A C G T A T G C C G T A G C T A A C G T A C G T A C G T
G C T A T C A G C A G T G C A T C G T A G A C T C G A T C G T A C G T A G A C T C A T G G T C A C T A G A C T G G A C T G A T C

PH0073.1_Hoxc9/Jaspar

Match Rank:4
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GACAHTAABCAH
GGAGGTCATTAATTAT
A C G T A C G T A C G T A C G T A T C G C G T A G T A C C G T A G A C T A C G T C T G A C G T A A C G T A T G C C G T A G C T A
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

Lhx3/MA0135.1/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GACAHTAABCAH--
-AAATTAATTAATC
A T C G C G T A G T A C C G T A G A C T A C G T C T G A C G T A A C G T A T G C C G T A G C T A A C G T A C G T
A C G T C G T A T C G A C G T A A C G T A C G T C G T A C G T A G A C T A G C T G C T A C G T A G A C T A G T C

Sox17/MA0078.1/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GACAHTAABCAH
GACAATGNN---
A T C G C G T A G T A C C G T A G A C T A C G T C T G A C G T A A C G T A T G C C G T A G C T A
T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T A C G T A C G T

MEIS1(var.2)/MA1639.1/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GACAHTAABCAH-
GTCATCAATCATT
A T C G C G T A G T A C C G T A G A C T A C G T C T G A C G T A A C G T A T G C C G T A G C T A A C G T
C T A G G A C T G A T C C T G A C A G T G T A C G T C A G C T A G C A T G T A C G C T A G C A T G C A T

PH0118.1_Nkx6-1_1/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GACAHTAABCAH----
GAAAATTAATTACTTCG
A C G T A T C G C G T A G T A C C G T A G A C T A C G T C T G A C G T A A C G T A T G C C G T A G C T A A C G T A C G T A C G T A C G T
C T A G T G C A G C T A C G T A C G T A C G A T A G C T C G T A C G T A C G A T A C G T C T G A G T A C G A C T A G C T A G T C A T C G

PH0019.1_Dbx2/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GACAHTAABCAH---
TTTAATTAATTAATTC
A C G T A T C G C G T A G T A C C G T A G A C T A C G T C T G A C G T A A C G T A T G C C G T A G C T A A C G T A C G T A C G T
A C G T C A G T G A C T G T C A C G T A G C A T G A C T C G T A C G T A C G A T C A G T C T G A C G T A A C G T G C A T G T A C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:10
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GACAHTAABCAH
GYCATCMATCAT
A T C G C G T A G T A C C G T A G A C T A C G T C T G A C G T A A C G T A T G C C G T A G C T A
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T