Information for 1-KKASSCAKYTAW (Motif 1)

A C T G A C T G C G T A A T C G A T G C A G T C C G T A A C T G A G T C A C G T C G T A C G A T
Reverse Opposite:
G C A T A C G T C G T A C T A G G T A C A C G T A C T G A T C G A T G C A C G T G T A C G T A C
p-value:1e-6
log p-value:-1.528e+01
Information Content per bp:1.782
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif37.50%
Number of Background Sequences with motif136.0
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets60.3 +/- 35.9bp
Average Position of motif in Background108.1 +/- 82.1bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-KKASSCAKYTAW----
CTTAACCACTTAAGGAT
A C G T A C T G A C T G C G T A A T C G A T G C A G T C C G T A A C T G A G T C A C G T C G T A C G A T A C G T A C G T A C G T A C G T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:KKASSCAKYTAW----
TAAGCCACTTAACATT
A C T G A C T G C G T A A T C G A T G C A G T C C G T A A C T G A G T C A C G T C G T A C G A T A C G T A C G T A C G T A C G T
C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

Nkx3-2/MA0122.3/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:KKASSCAKYTAW-
ATAACCACTTAAA
A C T G A C T G C G T A A T C G A T G C A G T C C G T A A C T G A G T C A C G T C G T A C G A T A C G T
C G T A C G A T C G T A C G T A T G A C G A T C G C T A G T A C G C A T G A C T G C T A C G T A G C T A

ISL2/MA0914.1/Jaspar

Match Rank:4
Score:0.63
Offset:4
Orientation:forward strand
Alignment:KKASSCAKYTAW
----GCACTTAA
A C T G A C T G C G T A A T C G A T G C A G T C C G T A A C T G A G T C A C G T C G T A C G A T
A C G T A C G T A C G T A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A

LHX2/MA0700.2/Jaspar

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:KKASSCAKYTAW-
--AACCAATTAAT
A C T G A C T G C G T A A T C G A T G C A G T C C G T A A C T G A G T C A C G T C G T A C G A T A C G T
A C G T A C G T C G T A C G T A A T G C G A T C G C T A G C T A C G A T C G A T G C T A C G T A G C A T

PH0004.1_Nkx3-2/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-KKASSCAKYTAW----
CATAACCACTTAACAAC
A C G T A C T G A C T G C G T A A T C G A T G C A G T C C G T A A C T G A G T C A C G T C G T A C G A T A C G T A C G T A C G T A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

RORA(var.2)/MA0072.1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-KKASSCAKYTAW-
TTGACCTANTTATN
A C G T A C T G A C T G C G T A A T C G A T G C A G T C C G T A A C T G A G T C A C G T C G T A C G A T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

Nkx3-1/MA0124.2/Jaspar

Match Rank:8
Score:0.60
Offset:3
Orientation:forward strand
Alignment:KKASSCAKYTAW
---ACCACTTAA
A C T G A C T G C G T A A T C G A T G C A G T C C G T A A C T G A G T C A C G T C G T A C G A T
A C G T A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A

PH0005.1_Barhl1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-KKASSCAKYTAW---
AACAACCAATTAATTC
A C G T A C T G A C T G C G T A A T C G A T G C A G T C C G T A A C T G A G T C A C G T C G T A C G A T A C G T A C G T A C G T
G T C A C T G A G T A C T C G A C T G A A T G C G A T C C T G A G C T A A C G T G A C T C G T A C T G A A C G T C G A T G A T C

MSX2/MA0708.1/Jaspar

Match Rank:10
Score:0.58
Offset:4
Orientation:forward strand
Alignment:KKASSCAKYTAW
----CCAATTAA
A C T G A C T G C G T A A T C G A T G C A G T C C G T A A C T G A G T C A C G T C G T A C G A T
A C G T A C G T A C G T A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A