Information for 6-AGTGCCTCGA (Motif 11)

C G T A A C T G A C G T A T C G A G T C A G T C A C G T A G T C A C T G C G T A
Reverse Opposite:
A C G T A G T C A C T G C G T A A C T G A C T G A T G C C G T A A G T C A C G T
p-value:1e-9
log p-value:-2.116e+01
Information Content per bp:1.962
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets139.2 +/- 24.7bp
Average Position of motif in Background72.4 +/- 0.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0006.1_Bcl6b_1/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AGTGCCTCGA----
NNNATTCCTCGAAAGN
A C G T A C G T C G T A A C T G A C G T A T C G A G T C A G T C A C G T A G T C A C T G C G T A A C G T A C G T A C G T A C G T
A T G C C T G A C G T A C G T A C G A T G C A T G T A C A G T C G C A T T G A C C T A G G C T A C G T A C T G A C T A G G C T A

BCL6/MA0463.2/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AGTGCCTCGA------
NATTCCTCGAAAGCAN
C G T A A C T G A C G T A T C G A G T C A G T C A C G T A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G T C A C T G A G C A T G A C T T G A C G A T C C G A T T G A C T C A G C G T A T G C A C G T A C A T G G A T C C T G A C G A T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AGTGCCTCGA
TTAAGTGCTT---
A C G T A C G T A C G T C G T A A C T G A C G T A T C G A G T C A G T C A C G T A G T C A C T G C G T A
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AGTGCCTCGA
TTRAGTGSYK---
A C G T A C G T A C G T C G T A A C T G A C G T A T C G A G T C A G T C A C G T A G T C A C T G C G T A
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---AGTGCCTCGA
TTGAGTGSTT---
A C G T A C G T A C G T C G T A A C T G A C G T A T C G A G T C A G T C A C G T A G T C A C T G C G T A
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T A C G T

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:6
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AGTGCCTCGA--------
GAAGTANCACGAATNMRAGT
A C G T A C G T C G T A A C T G A C G T A T C G A G T C A G T C A C G T A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T

Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AGTGCCTCGA-
-KGGCCYCWTD
C G T A A C T G A C G T A T C G A G T C A G T C A C G T A G T C A C T G C G T A A C G T
A C G T C A T G C A T G T A C G G T A C A T G C G A T C A T G C G C T A A G C T C T G A

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AGTGCCTCGA------
-TTTCCTGGAAAGNNN
C G T A A C T G A C G T A T C G A G T C A G T C A C G T A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G A C T A G C T A G C T G A T C G A T C G C A T C T A G T C A G T C G A T C G A C T G A C T A G A G T C G C T A C T G A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:9
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----AGTGCCTCGA
CTYRAGTGSY----
A C G T A C G T A C G T A C G T C G T A A C T G A C G T A T C G A G T C A G T C A C G T A G T C A C T G C G T A
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T A C G T A C G T

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:10
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------AGTGCCTCGA-
ACTCCAAGTACTTGGAA
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A T C G A G T C A G T C A C G T A G T C A C T G C G T A A C G T
T C G A G T A C C G A T A T G C T A G C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A C T G T C A G T G C A G T C A