Information for 9-TTTATTGGCG (Motif 19)

A C G T A C G T A C G T C G T A A C G T A C G T A C T G A C T G A G T C A C T G
Reverse Opposite:
A G T C A C T G G T A C A G T C C G T A C G T A A C G T C G T A C G T A C G T A
p-value:1e-8
log p-value:-1.888e+01
Information Content per bp:1.962
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets178.8 +/- 14.0bp
Average Position of motif in Background38.0 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA13/MA0650.2/Jaspar

Match Rank:1
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--TTTATTGGCG
GTTTTATTGGN-
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C T G A C T G A G T C A C T G
C A T G C A G T A C G T A G C T A G C T C G T A A C G T A C G T C T A G A T C G A C T G A C G T

HOXD13/MA0909.2/Jaspar

Match Rank:2
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--TTTATTGGCG
GTTTTATTGGG-
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C T G A C T G A G T C A C T G
A C T G A C G T A C G T A G C T A C G T C G T A A G C T A C G T A C T G A T C G A T C G A C G T

HOXB13/MA0901.2/Jaspar

Match Rank:3
Score:0.79
Offset:-4
Orientation:reverse strand
Alignment:----TTTATTGGCG
NNATTTTATTGGNN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C T G A C T G A G T C A C T G
C G T A C G T A C G T A C G A T C G A T C G A T G C A T T G C A G C A T C G A T C T A G C A T G G C A T G C A T

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-TTTATTGGCG
TTTNATTGCY-
A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C T G A C T G A G T C A C T G
A C G T A C G T C G A T A C G T G T C A A C G T C A G T C T A G A T G C G A T C A C G T

CDX2/MA0465.2/Jaspar

Match Rank:5
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--TTTATTGGCG
NTTTTATTGCNN
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C T G A C T G A G T C A C T G
C G A T G C A T C G A T G C A T G C A T T C G A G A C T C A G T C T A G G A T C G C A T G A C T

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-TTTATTGGCG
TTTTATTRGN-
A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C T G A C T G A G T C A C T G
C G A T A C G T A C G T G C A T C G T A G A C T C A G T C T A G A T C G G A T C A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:7
Score:0.76
Offset:-5
Orientation:reverse strand
Alignment:-----TTTATTGGCG-
NNAATTTTATTGGNTN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C T G A C T G A G T C A C T G A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:8
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----TTTATTGGCG-
NNANTTTTATTGGNNN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C T G A C T G A G T C A C T G A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:9
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-TTTATTGGCG
TTTTATKRGG-
A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C T G A C T G A G T C A C T G
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T

CDX4/MA1473.1/Jaspar

Match Rank:10
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--TTTATTGGCG
GTTTTATTGCC-
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C T G A C T G A G T C A C T G
T C A G C A G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G T C G T A C A C G T