Information for 2-GAATTAGACG (Motif 4)

A C T G C G T A C G T A A C G T A C G T C G T A A C T G C G T A A G T C A C T G
Reverse Opposite:
A G T C A C T G A C G T A G T C A C G T C G T A C G T A A C G T A C G T A G T C
p-value:1e-4
log p-value:-1.053e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets139.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX4/MA0068.2/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GAATTAGACG
CTAATTAG---
A C G T A C T G C G T A C G T A A C G T A C G T C G T A A C T G C G T A A G T C A C T G
A G T C C A G T G C T A C G T A A C G T G C A T G T C A T C A G A C G T A C G T A C G T

TLX2/MA1577.1/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GAATTAGACG
CTAATTAG---
A C G T A C T G C G T A C G T A A C G T A C G T C G T A A C T G C G T A A G T C A C T G
A G T C G A C T C T G A C G T A A C G T A C G T C G T A T C A G A C G T A C G T A C G T

ARGFX/MA1463.1/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GAATTAGACG
TTTAATTAGN--
A C G T A C G T A C T G C G T A C G T A A C G T A C G T C G T A A C T G C G T A A G T C A C T G
C A G T G A C T G A C T C T G A C G T A A C G T C A G T C T G A C T A G G T C A A C G T A C G T

VSX2/MA0726.1/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GAATTAGACG
NTAATTAG---
A C G T A C T G C G T A C G T A A C G T A C G T C G T A A C T G C G T A A G T C A C T G
T G A C G A C T C G T A C T G A A C G T C G A T C T G A T C A G A C G T A C G T A C G T

VSX1/MA0725.1/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GAATTAGACG
NTAATTAG---
A C G T A C T G C G T A C G T A A C G T A C G T C G T A A C T G C G T A A G T C A C T G
T G C A G A C T G T C A C T G A A G C T C A G T C T G A C T A G A C G T A C G T A C G T

EN1/MA0027.2/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GAATTAGACG
CTAATTAG---
A C G T A C T G C G T A C G T A A C G T A C G T C G T A A C T G C G T A A G T C A C T G
A T G C G A C T T G C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T

EMX1/MA0612.2/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GAATTAGACG
CTAATTAG---
A C G T A C T G C G T A C G T A A C G T A C G T C G T A A C T G C G T A A G T C A C T G
A T G C G A C T G T C A C G T A A C G T A C G T C G T A T A C G A C G T A C G T A C G T

MIXL1/MA0662.1/Jaspar

Match Rank:8
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GAATTAGACG
TCTAATTAAC--
A C G T A C G T A C T G C G T A C G T A A C G T A C G T C G T A A C T G C G T A A G T C A C T G
C G A T A G T C G A C T T C G A G C T A A G C T A G C T G C T A T C G A T G A C A C G T A C G T

Shox2/MA0720.1/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GAATTAGACG
CTAATTAA---
A C G T A C T G C G T A C G T A A C G T A C G T C G T A A C T G C G T A A G T C A C T G
A G T C G A C T G C T A G T C A G C A T C A G T G C T A T C G A A C G T A C G T A C G T

HOXD3/MA0912.2/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GAATTAGACG
GTAATTAG---
A C G T A C T G C G T A C G T A A C G T A C G T C G T A A C T G C G T A A G T C A C T G
T A C G A G C T G T C A C G T A A C G T A C G T C T G A T C A G A C G T A C G T A C G T