Information for 1-TATGTCTG (Motif 1)

A C G T C G T A A C G T A C T G A G C T A G T C C G A T A C T G
Reverse Opposite:
A G T C C G T A A C T G C T G A A G T C C G T A C G A T C G T A
p-value:1e-7
log p-value:-1.787e+01
Information Content per bp:1.899
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif70.00%
Number of Background Sequences with motif3288.0
Percentage of Background Sequences with motif3.99%
Average Position of motif in Targets106.3 +/- 51.2bp
Average Position of motif in Background99.4 +/- 85.1bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---TATGTCTG------
NNTNNTGTCTGGNNTNG
A C G T A C G T A C G T A C G T C G T A A C G T A C T G A G C T A G T C C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.74
Offset:1
Orientation:forward strand
Alignment:TATGTCTG-
-CTGTCTGG
A C G T C G T A A C G T A C T G A G C T A G T C C G A T A C T G A C G T
A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-TATGTCTG-
VBSYGTCTGG
A C G T A C G T C G T A A C G T A C T G A G C T A G T C C G A T A C T G A C G T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.72
Offset:1
Orientation:forward strand
Alignment:TATGTCTG-
-TWGTCTGV
A C G T C G T A A C G T A C T G A G C T A G T C C G A T A C T G A C G T
A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

NEUROG2/MA0669.1/Jaspar

Match Rank:5
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----TATGTCTG
AACATATGTC--
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A G C T A G T C C G A T A C T G
T C G A T G C A G A T C C T G A A C G T T G C A G C A T A C T G A G C T A G T C A C G T A C G T

Smad4/MA1153.1/Jaspar

Match Rank:6
Score:0.66
Offset:2
Orientation:forward strand
Alignment:TATGTCTG--
--TGTCTAGA
A C G T C G T A A C G T A C T G A G C T A G T C C G A T A C T G A C G T A C G T
A C G T A C G T G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A

NEUROG1/MA0623.2/Jaspar

Match Rank:7
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TATGTCTG
GACATATGTC--
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A G C T A G T C C G A T A C T G
T C A G T G C A A G T C C T G A A G C T C T G A A G C T A T C G A C G T A G T C A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:8
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TATGTCTG
-NTGTCAN
A C G T C G T A A C G T A C T G A G C T A G T C C G A T A C T G
A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A

PB0166.1_Sox12_2/Jaspar

Match Rank:9
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----TATGTCTG---
ANTCCTTTGTCTNNNN
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A G C T A G T C C G A T A C T G A C G T A C G T A C G T
C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TATGTCTG------
--TGTCTGDCACCT
A C G T C G T A A C G T A C T G A G C T A G T C C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T