Information for 10-CATAAATCGA (Motif 19)

A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C A C T G C G T A
Reverse Opposite:
A C G T A G T C A C T G C G T A A C G T A C G T A C G T C G T A A C G T A C T G
p-value:1e-3
log p-value:-7.945e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif6.25%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.0 +/- 0.0bp
Average Position of motif in Background89.9 +/- 21.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:1
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---CATAAATCGA--
NNCCATAAATCATNN
A C G T A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C A C T G C G T A A C G T A C G T
C T G A T C A G G A T C G T A C T C G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G C A T G C A T G A C T

PBX2/MA1113.2/Jaspar

Match Rank:2
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--CATAAATCGA-
GTCATAAATCATT
A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C A C T G C G T A A C G T
T C A G G A C T G T A C C T G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G A C T G C A T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---CATAAATCGA
GGCCATAAATCA-
A C G T A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C A C T G C G T A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T

MEIS1(var.2)/MA1639.1/Jaspar

Match Rank:4
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--CATAAATCGA-
GTCATCAATCATT
A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C A C T G C G T A A C G T
C T A G G A C T G A T C C T G A C A G T G T A C G T C A G C T A G C A T G T A C G C T A G C A T G C A T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CATAAATCGA
NGYCATAAAWCH-
A C G T A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C A C T G C G T A
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T

ONECUT2/MA0756.1/Jaspar

Match Rank:6
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CATAAATCGA----
AAAAAATCGATAAT
A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C A C T G C G T A A C G T A C G T A C G T A C G T
T C G A C T G A C G T A G C T A C T G A C T G A A C G T G T A C T C A G G C T A G C A T C G T A G C T A G C A T

CDX1/MA0878.2/Jaspar

Match Rank:7
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CATAAATCGA
GGCCATAAAAC--
A C G T A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C A C T G C G T A
C A T G C T A G A G T C T G A C C G T A A C G T C T G A C G T A C T G A G T C A A G T C A C G T A C G T

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:8
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CATAAATCGA
NCYATMAATCAY
A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C A C T G C G T A
T A C G G A T C G A T C C T G A A G C T G T C A G C T A T C G A C G A T G A T C G C T A G A C T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:9
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CATAAATCGA
TCATCAATCA-
A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C A C T G C G T A
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T

PBX1/MA0070.1/Jaspar

Match Rank:10
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CATAAATCGA-
CCATCAATCAAA
A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C A C T G C G T A A C G T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A