Information for 12-ATACAGGTCAAG (Motif 8)

C G T A C G A T G T C A A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T C T A G C G T A G T A C A G T C A C G T A C T G A C G T C G T A A C G T
p-value:1e-10
log p-value:-2.348e+01
Information Content per bp:1.906
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets86.3 +/- 62.5bp
Average Position of motif in Background62.9 +/- 41.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA/MA0071.1/Jaspar

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:ATACAGGTCAAG
ATCAAGGTCA--
C G T A C G A T G T C A A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T

RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.73
Offset:4
Orientation:forward strand
Alignment:ATACAGGTCAAG----
----AGGTCAAGGTCA
C G T A C G A T G T C A A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

RORB/MA1150.1/Jaspar

Match Rank:3
Score:0.70
Offset:0
Orientation:forward strand
Alignment:ATACAGGTCAAG
AATTAGGTCAC-
C G T A C G A T G T C A A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G
C G T A G C T A C G A T A C G T C T G A A C T G C T A G A G C T G A T C C T G A G A T C A C G T

RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer

Match Rank:4
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:ATACAGGTCAAG
-CAAAGKTCAA-
C G T A C G A T G T C A A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G
A C G T G A T C G T C A T C G A T C G A C T A G C A T G A G C T G T A C T C G A T C G A A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:5
Score:0.69
Offset:4
Orientation:forward strand
Alignment:ATACAGGTCAAG----
----AGGTCAAGGTCA
C G T A C G A T G T C A A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:6
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-ATACAGGTCAAG--
AAWCTAGGTCARDNN
A C G T C G T A C G A T G T C A A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C G T
C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A

RORC/MA1151.1/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--ATACAGGTCAAG
ATAAGTAGGTCA--
A C G T A C G T C G T A C G A T G T C A A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G
C T G A C G A T G C T A C G T A A C T G A C G T T C G A C A T G C T A G A C G T A G T C C T G A A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:ATACAGGTCAAG
AAYTAGGTCA--
C G T A C G A T G T C A A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:9
Score:0.66
Offset:0
Orientation:forward strand
Alignment:ATACAGGTCAAG
AAYTAGGTCA--
C G T A C G A T G T C A A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:10
Score:0.66
Offset:1
Orientation:forward strand
Alignment:ATACAGGTCAAG--
-CAAAGGTCAAGGG
C G T A C G A T G T C A A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C G T
A C G T G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G