Information for 12-CAAAGGTAGATT (Motif 17)

A G T C C G T A C G T A C G T A A C T G A C T G A C G T C G T A A C T G C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A A C G T A G T C A C G T C G T A A G T C A G T C A C G T A C G T A C G T A C T G
p-value:1e-4
log p-value:-1.050e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets7.0 +/- 0.0bp
Average Position of motif in Background122.5 +/- 18.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:1
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CAAAGGTAGATT
RACAAWGG------
A C G T A C G T A G T C C G T A C G T A C G T A A C T G A C T G A C G T C G T A A C T G C G T A A C G T A C G T
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:2
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CAAAGGTAGATT
AAAACAAAGG------
A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C T G A C T G A C G T C G T A A C T G C G T A A C G T A C G T
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer

Match Rank:3
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CAAAGGTAGATT
ASATCAAAGG------
A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C T G A C T G A C G T C G T A A C T G C G T A A C G T A C G T
C T G A A T C G G C T A G C A T T A G C C G T A T C G A C T G A T C A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

HNF4A(var.2)/MA1494.1/Jaspar

Match Rank:4
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CAAAGGTAGATT
GGGTCCAAAGGTCAC--
A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C T G A C T G A C G T C G T A A C T G C G T A A C G T A C G T
T C A G C T A G C A T G C A G T G A T C G A T C C T G A C G T A C T G A A C T G C A T G A C G T A G T C C T G A G T A C A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CAAAGGTAGATT
ACATCAAAGG------
A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C T G A C T G A C G T C G T A A C T G C G T A A C G T A C G T
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:6
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CAAAGGTAGATT
ACWTCAAAGG------
A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C T G A C T G A C G T C G T A A C T G C G T A A C G T A C G T
C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

SOX10/MA0442.2/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CAAAGGTAGATT
AAAACAAAGAA-----
A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C T G A C T G A C G T C G T A A C T G C G T A A C G T A C G T
C T G A C T G A T G C A G C T A A G T C C G T A G C T A G C T A A C T G T C G A T G C A A C G T A C G T A C G T A C G T A C G T

TCF7/MA0769.2/Jaspar

Match Rank:8
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CAAAGGTAGATT
ANATCAAAGNN-----
A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C T G A C T G A C G T C G T A A C T G C G T A A C G T A C G T
C G T A A T G C G C T A G C A T T G A C G C T A G C T A C G T A A C T G T C A G T G C A A C G T A C G T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:9
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CAAAGGTAGATT
GGAACAAAGR------
A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C T G A C T G A C G T C G T A A C T G C G T A A C G T A C G T
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CAAAGGTAGATT
VRRACAAWGG------
A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C T G A C T G A C G T C G T A A C T G C G T A A C G T A C G T
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T