Information for 4-ATGGTCATTCCC (Motif 5)

C G T A A C G T A C T G A C T G A C G T A G T C C G T A A C G T A C G T A G T C A G T C A G T C
Reverse Opposite:
A C T G A C T G C T A G C G T A C G T A A C G T A C T G G T C A G T A C A G T C G T C A A C G T
p-value:1e-4
log p-value:-9.992e+00
Information Content per bp:1.939
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif176.9
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets100.3 +/- 50.2bp
Average Position of motif in Background96.1 +/- 90.7bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR1H4/MA1110.1/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:ATGGTCATTCCC
NAGGTCATTGA-
C G T A A C G T A C T G A C T G A C G T A G T C C G T A A C G T A C G T A G T C A G T C A G T C
C G A T T C G A C A T G C A T G A C G T G A T C T C G A A G C T G C A T T C A G T G C A A C G T

REL/MA0101.1/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:ATGGTCATTCCC
-GGGGATTTCC-
C G T A A C G T A C T G A C T G A C G T A G T C C G T A A C G T A C G T A G T C A G T C A G T C
A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:ATGGTCATTCCC
NGGGGATTTCCC
C G T A A C G T A C T G A C T G A C G T A G T C C G T A A C G T A C G T A G T C A G T C A G T C
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:4
Score:0.64
Offset:2
Orientation:forward strand
Alignment:ATGGTCATTCCC
--GGAAATTCCC
C G T A A C G T A C T G A C T G A C G T A G T C C G T A A C G T A C G T A G T C A G T C A G T C
A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

RELB/MA1117.1/Jaspar

Match Rank:5
Score:0.63
Offset:4
Orientation:forward strand
Alignment:ATGGTCATTCCC---
----GAATTCCCCGG
C G T A A C G T A C T G A C T G A C G T A G T C C G T A A C G T A C G T A G T C A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C T G A C G T A C G A T G A C T G A T C G T A C G T A C T A G C C A T G T A C G

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:6
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:ATGGTCATTCCC--
--GGGGATTCCCCC
C G T A A C G T A C T G A C T G A C G T A G T C C G T A A C G T A C G T A G T C A G T C A G T C A C G T A C G T
A C G T A C G T A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

RARB(var.3)/MA1552.1/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:ATGGTCATTCCC--
AAGGTCATGACCTT
C G T A A C G T A C T G A C T G A C G T A G T C C G T A A C G T A C G T A G T C A G T C A G T C A C G T A C G T
C T G A T C G A C T A G C A T G A C G T A G T C C T G A G A C T T C A G T C G A G T A C T G A C A G C T G A C T

RARG(var.3)/MA1553.1/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:ATGGTCATTCCC--
AAGGTCATGACCTT
C G T A A C G T A C T G A C T G A C G T A G T C C G T A A C G T A C G T A G T C A G T C A G T C A C G T A C G T
C T G A T C G A C A T G C A T G C G A T A G T C C T G A G A C T T C A G G C T A G T A C G T A C A G C T G A C T

TEAD3/MA0808.1/Jaspar

Match Rank:9
Score:0.61
Offset:4
Orientation:forward strand
Alignment:ATGGTCATTCCC
----ACATTCCA
C G T A A C G T A C T G A C T G A C G T A G T C C G T A A C G T A C G T A G T C A G T C A G T C
A C G T A C G T A C G T A C G T C T G A T G A C C G T A A C G T C G A T A G T C A G T C C G T A

ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--ATGGTCATTCCC-
GARTGGTCATCGCCC
A C G T A C G T C G T A A C G T A C T G A C T G A C G T A G T C C G T A A C G T A C G T A G T C A G T C A G T C A C G T
T A C G C G T A T C A G G A C T C T A G A C T G C A G T T A G C T C G A A C G T G T A C C T A G A G T C A G T C G A T C