Information for 21-TGCCAATCACAA (Motif 22)

A C G T A C T G A G T C A G T C C G T A C G T A A C G T A G T C C G T A A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G A C G T A C T G C G T A A C G T A C G T A C T G A C T G A G T C C G T A
p-value:1e-4
log p-value:-9.624e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets117.0 +/- 0.0bp
Average Position of motif in Background169.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFYC/MA1644.1/Jaspar

Match Rank:1
Score:0.77
Offset:0
Orientation:forward strand
Alignment:TGCCAATCACAA
AGCCAATCAGA-
A C G T A C T G A G T C A G T C C G T A C G T A A C G T A G T C C G T A A G T C C G T A C G T A
T C G A C T A G A G T C G T A C G C T A T C G A G A C T T A G C T C G A T A C G T G C A A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:2
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--TGCCAATCACAA
SCTGTCAVTCAV--
A C G T A C G T A C G T A C T G A G T C A G T C C G T A C G T A A C G T A G T C C G T A A G T C C G T A C G T A
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T

NFYA/MA0060.3/Jaspar

Match Rank:3
Score:0.75
Offset:0
Orientation:forward strand
Alignment:TGCCAATCACAA
AACCAATCAGA-
A C G T A C T G A G T C A G T C C G T A C G T A A C G T A G T C C G T A A G T C C G T A C G T A
T C G A C T G A A G T C G A T C G C T A T C G A G A C T T A G C T C G A T A C G T G C A A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--TGCCAATCACAA
NCTGTCAATCAN--
A C G T A C G T A C G T A C T G A G T C A G T C C G T A C G T A A C G T A G T C C G T A A G T C C G T A C G T A
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TGCCAATCACAA
GGTGCCAAGT----
A C G T A C G T A C G T A C T G A G T C A G T C C G T A C G T A A C G T A G T C C G T A A G T C C G T A C G T A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:6
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---TGCCAATCACAA
ACTAGCCAATCA---
A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A C G T A A C G T A G T C C G T A A G T C C G T A C G T A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:7
Score:0.67
Offset:2
Orientation:forward strand
Alignment:TGCCAATCACAA
--CCAATCAA--
A C G T A C T G A G T C A G T C C G T A C G T A A C G T A G T C C G T A A G T C C G T A C G T A
A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TGCCAATCACAA
CGTGCCAAG-----
A C G T A C G T A C G T A C T G A G T C A G T C C G T A C G T A A C G T A G T C C G T A A G T C C G T A C G T A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:9
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TGCCAATCACAA
AGCCAATCGG--
A C G T A C T G A G T C A G T C C G T A C G T A A C G T A G T C C G T A A G T C C G T A C G T A
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TGCCAATCACAA
ATGCCAACC----
A C G T A C G T A C T G A G T C A G T C C G T A C G T A A C G T A G T C C G T A A G T C C G T A C G T A
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T