| p-value: | 1e-3 |
| log p-value: | -8.914e+00 |
| Information Content per bp: | 1.530 |
| Number of Target Sequences with motif | 1.0 |
| Percentage of Target Sequences with motif | 10.00% |
| Number of Background Sequences with motif | 0.8 |
| Percentage of Background Sequences with motif | 0.00% |
| Average Position of motif in Targets | 30.0 +/- 0.0bp |
| Average Position of motif in Background | 187.0 +/- 0.0bp |
| Strand Bias (log2 ratio + to - strand density) | 10.0 |
| Multiplicity (# of sites on avg that occur together) | 1.00 |
| Motif File: | file (matrix) reverse opposite |
| SVG Files for Logos: | forward logo reverse opposite |
RARB(var.3)/MA1552.1/Jaspar
| Match Rank: | 1 |
| Score: | 0.61 |
| Offset: | 2 |
| Orientation: | forward strand |
| Alignment: | TGCAGGCCATGA---- --AAGGTCATGACCTT |
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RARG(var.3)/MA1553.1/Jaspar
| Match Rank: | 2 |
| Score: | 0.61 |
| Offset: | 2 |
| Orientation: | forward strand |
| Alignment: | TGCAGGCCATGA---- --AAGGTCATGACCTT |
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Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer
| Match Rank: | 3 |
| Score: | 0.59 |
| Offset: | 4 |
| Orientation: | forward strand |
| Alignment: | TGCAGGCCATGA-- ----RGCAATNAAA |
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Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer
| Match Rank: | 4 |
| Score: | 0.59 |
| Offset: | 4 |
| Orientation: | forward strand |
| Alignment: | TGCAGGCCATGA-- ----GGCCATTAAC |
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Zfx/MA0146.2/Jaspar
| Match Rank: | 5 |
| Score: | 0.58 |
| Offset: | 2 |
| Orientation: | reverse strand |
| Alignment: | TGCAGGCCATGA---- --CAGGCCNNGGCCNN |
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RXRB(var.2)/MA1555.1/Jaspar
| Match Rank: | 6 |
| Score: | 0.58 |
| Offset: | 2 |
| Orientation: | forward strand |
| Alignment: | TGCAGGCCATGA---- --GAGGTCATGACCTC |
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ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer
| Match Rank: | 7 |
| Score: | 0.58 |
| Offset: | 3 |
| Orientation: | forward strand |
| Alignment: | TGCAGGCCATGA ---AGGCCTNG- |
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RXRG(var.2)/MA1556.1/Jaspar
| Match Rank: | 8 |
| Score: | 0.58 |
| Offset: | 2 |
| Orientation: | reverse strand |
| Alignment: | TGCAGGCCATGA---- --GAGGTCATGACCTC |
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Nr5a2/MA0505.1/Jaspar
| Match Rank: | 9 |
| Score: | 0.57 |
| Offset: | 1 |
| Orientation: | reverse strand |
| Alignment: | TGCAGGCCATGA---- -GCTGACCTTGAACTN |
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ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer
| Match Rank: | 10 |
| Score: | 0.56 |
| Offset: | 3 |
| Orientation: | forward strand |
| Alignment: | TGCAGGCCATGA ---AGGCCTAG- |
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