Information for 11-AAGTACTCAGAC (Motif 14)

C G T A C G T A A C T G A C G T C G T A A G T C A C G T A G T C C G T A A C T G C G T A A G T C
Reverse Opposite:
A C T G A C G T A G T C A C G T A C T G C G T A A C T G A C G T C G T A A G T C A C G T A C G T
p-value:1e-4
log p-value:-9.476e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets170.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0117.1_Nkx3-1/Jaspar

Match Rank:1
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----AAGTACTCAGAC-
TACTAAGTACTTAAATG
A C G T A C G T A C G T A C G T C G T A C G T A A C T G A C G T C G T A A G T C A C G T A G T C C G T A A C T G C G T A A G T C A C G T
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:2
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----AAGTACTCAGAC
ACTCCAAGTACTTGGAA
A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A C G T C G T A A G T C A C G T A G T C C G T A A C T G C G T A A G T C
T C G A G T A C C G A T A T G C T A G C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A C T G T C A G T G C A G T C A

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AAGTACTCAGAC
AAGCACTTAA--
C G T A C G T A A C T G A C G T C G T A A G T C A C G T A G T C C G T A A C T G C G T A A G T C
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T

PH0116.1_Nkx2-9/Jaspar

Match Rank:4
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----AAGTACTCAGAC
NATTTAAGTACTTNAAA
A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A C G T C G T A A G T C A C G T A G T C C G T A A C T G C G T A A G T C
C T G A G C T A C G A T G C A T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T G C T A C G T A C T G A G C T A

PH0112.1_Nkx2-3/Jaspar

Match Rank:5
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----AAGTACTCAGAC
CNTTAAGTACTTAANG
A C G T A C G T A C G T A C G T C G T A C G T A A C T G A C G T C G T A A G T C A C G T A G T C C G T A A C T G C G T A A G T C
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G

ZNF274/MA1592.1/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---AAGTACTCAGAC-
NNCGAGAACTCATACN
A C G T A C G T A C G T C G T A C G T A A C T G A C G T C G T A A G T C A C G T A G T C C G T A A C T G C G T A A G T C A C G T
G T C A T C A G G A T C C T A G C G T A C A T G C T G A G T C A A T G C G A C T A G T C T G C A G A C T T C G A A G T C G A T C

PB0099.1_Zfp691_1/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----AAGTACTCAGAC-
CGAACAGTGCTCACTAT
A C G T A C G T A C G T A C G T C G T A C G T A A C T G A C G T C G T A A G T C A C G T A G T C C G T A A C T G C G T A A G T C A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:AAGTACTCAGAC--
------BCAGACWA
C G T A C G T A A C T G A C G T C G T A A G T C A C G T A G T C C G T A A C T G C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:AAGTACTCAGAC--
------CCAGACAG
C G T A C G T A A C T G A C G T C G T A A G T C A C G T A G T C C G T A A C T G C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:AAGTACTCAGAC----
------CCAGACRSVB
C G T A C G T A A C T G A C G T C G T A A G T C A C G T A G T C C G T A A C T G C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C