Information for 5-GCGAATTA (Motif 33)

A C T G A G T C A C T G C G T A C G T A A C G T A C G T C G T A
Reverse Opposite:
A C G T C G T A C G T A A C G T A C G T A G T C A C T G A G T C
p-value:1e-2
log p-value:-5.194e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif9.09%
Number of Background Sequences with motif37.1
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets80.0 +/- 0.0bp
Average Position of motif in Background93.0 +/- 70.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX4/MA0068.2/Jaspar

Match Rank:1
Score:0.80
Offset:1
Orientation:forward strand
Alignment:GCGAATTA-
-CTAATTAG
A C T G A G T C A C T G C G T A C G T A A C G T A C G T C G T A A C G T
A C G T A G T C C A G T G C T A C G T A A C G T G C A T G T C A T C A G

PRRX2/MA0075.3/Jaspar

Match Rank:2
Score:0.77
Offset:1
Orientation:forward strand
Alignment:GCGAATTA-
-CTAATTAA
A C T G A G T C A C T G C G T A C G T A A C G T A C G T C G T A A C G T
A C G T A G T C A G C T T G C A C G T A A C G T A C G T T C G A C T G A

LHX9/MA0701.2/Jaspar

Match Rank:3
Score:0.77
Offset:1
Orientation:forward strand
Alignment:GCGAATTA-
-CTAATTAA
A C T G A G T C A C T G C G T A C G T A A C G T A C G T C G T A A C G T
A C G T A G T C A G C T G T C A C G T A A C G T A C G T C T G A T C G A

HESX1/MA0894.1/Jaspar

Match Rank:4
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:GCGAATTA--
NCCAATTANC
A C T G A G T C A C T G C G T A C G T A A C G T A C G T C G T A A C G T A C G T
C T A G A G T C G A T C C T G A G T C A A G C T G A C T G C T A C T A G A G T C

RAX/MA0718.1/Jaspar

Match Rank:5
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GCGAATTA--
GCCAATTAAC
A C T G A G T C A C T G C G T A C G T A A C G T A C G T C G T A A C G T A C G T
T C A G A G T C G A T C G C T A G T C A C G A T G A C T C G T A C T G A G A T C

DRGX/MA1481.1/Jaspar

Match Rank:6
Score:0.76
Offset:1
Orientation:forward strand
Alignment:GCGAATTA-
-CTAATTAC
A C T G A G T C A C T G C G T A C G T A A C G T A C G T C G T A A C G T
A C G T A G T C A G C T T C G A C G T A A C G T A G C T C T G A T A G C

GBX1/MA0889.1/Jaspar

Match Rank:7
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GCGAATTA--
ACTAATTAGC
A C T G A G T C A C T G C G T A C G T A A C G T A C G T C G T A A C G T A C G T
T C G A A T G C G A C T T C G A T G C A G A C T G A C T G C T A T A C G A G T C

LBX2/MA0699.1/Jaspar

Match Rank:8
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GCGAATTA--
GCCAATTAGC
A C T G A G T C A C T G C G T A C G T A A C G T A C G T C G T A A C G T A C G T
T C A G A G T C G A T C T G C A T G C A A C G T A C G T C G T A C T A G T A G C

Nobox/MA0125.1/Jaspar

Match Rank:9
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GCGAATTA
ACCAATTA
A C T G A G T C A C T G C G T A C G T A A C G T A C G T C G T A
T C G A A T G C G A T C G T C A G T C A A C G T C G A T C T G A

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:10
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GCGAATTA
NCTAATTA
A C T G A G T C A C T G C G T A C G T A A C G T A C G T C G T A
T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A