Information for 9-TCAAATTMCCAC (Motif 12)

A G C T G T A C C G T A C G T A C G T A A C G T C A G T G T A C G A T C G T A C C G T A A G T C
Reverse Opposite:
A C T G C G A T A C T G C T A G C A T G G C T A G T C A C G A T A C G T A C G T A C T G C T G A
p-value:1e-8
log p-value:-1.972e+01
Information Content per bp:1.794
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.18%
Number of Background Sequences with motif163.1
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets103.0 +/- 64.5bp
Average Position of motif in Background94.9 +/- 60.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TCF7/MA0769.2/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TCAAATTMCCAC
ANATCAAAGNN----
A C G T A C G T A C G T A G C T G T A C C G T A C G T A C G T A A C G T C A G T G T A C G A T C G T A C C G T A A G T C
C G T A A T G C G C T A G C A T T G A C G C T A G C T A C G T A A C T G T C A G T G C A A C G T A C G T A C G T A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:2
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TCAAATTMCCAC
GKVTCADRTTWC---
A C G T A C G T A C G T A G C T G T A C C G T A C G T A C G T A A C G T C A G T G T A C G A T C G T A C C G T A A G T C
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T A C G T A C G T

HNF4G/MA0484.2/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TCAAATTMCCAC
TCCAAAGTCCAGA
A C G T A G C T G T A C C G T A C G T A C G T A A C G T C A G T G T A C G A T C G T A C C G T A A G T C
C A G T A G T C G A T C T C G A T C G A C T G A A C T G C A G T G A T C G A T C C G T A T C A G C T G A

HNF4A/MA0114.4/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TCAAATTMCCAC
TCCAAAGTCCAAA
A C G T A G C T G T A C C G T A C G T A C G T A A C G T C A G T G T A C G A T C G T A C C G T A A G T C
C A G T G A T C G A T C T G C A T C G A C T G A A C T G C A G T G A T C G A T C C G T A C T G A C T G A

Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer

Match Rank:5
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TCAAATTMCCAC
VGGTVTCAGRTTWCA--
A C G T A C G T A C G T A C G T A C G T A G C T G T A C C G T A C G T A C G T A A C G T C A G T G T A C G A T C G T A C C G T A A G T C
T A G C T C A G T C A G C A G T T C A G A C G T A G T C T C G A C T A G C T A G A C G T A C G T C G A T G T A C G T C A A C G T A C G T

PHOX2B/MA0681.2/Jaspar

Match Rank:6
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----TCAAATTMCCAC
TTTAATCAAATTATAT-
A C G T A C G T A C G T A C G T A C G T A G C T G T A C C G T A C G T A C G T A A C G T C A G T G T A C G A T C G T A C C G T A A G T C
C G A T G C A T G C A T C G T A C G T A G C A T G A T C G C T A G C T A C G T A C G A T G C A T C G T A C G A T G C T A G C A T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:7
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TCAAATTMCCAC
GKMTCADRTTWC---
A C G T A C G T A C G T A G C T G T A C C G T A C G T A C G T A A C G T C A G T G T A C G A T C G T A C C G T A A G T C
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TCAAATTMCCAC
GGAAATTCCC--
A G C T G T A C C G T A C G T A C G T A A C G T C A G T G T A C G A T C G T A C C G T A A G T C
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T

LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer

Match Rank:9
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TCAAATTMCCAC
ASATCAAAGG-----
A C G T A C G T A C G T A G C T G T A C C G T A C G T A C G T A A C G T C A G T G T A C G A T C G T A C C G T A A G T C
C T G A A T C G G C T A G C A T T A G C C G T A T C G A C T G A T C A G T A C G A C G T A C G T A C G T A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:10
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----TCAAATTMCCAC
CGGTTTCAAA-------
A C G T A C G T A C G T A C G T A C G T A G C T G T A C C G T A C G T A C G T A A C G T C A G T G T A C G A T C G T A C C G T A A G T C
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T