Information for 2-CCATACTTCA (Motif 10)

T A G C A G T C C G T A A G C T T C G A T A G C G C A T C G A T A G T C C T G A
Reverse Opposite:
A G C T A C T G C G T A C G T A A T C G A G C T C T G A A C G T C T A G A T C G
p-value:1e-9
log p-value:-2.299e+01
Information Content per bp:1.829
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif3.46%
Number of Background Sequences with motif328.3
Percentage of Background Sequences with motif0.69%
Average Position of motif in Targets83.8 +/- 51.4bp
Average Position of motif in Background104.6 +/- 60.5bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CCATACTTCA
YCATCMATCA
T A G C A G T C C G T A A G C T T C G A T A G C G C A T C G A T A G T C C T G A
G A T C G T A C C T G A A C G T G A T C G T C A C T G A A C G T G A T C G C T A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CCATACTTCA
GGCCATAAATCA
A C G T A C G T T A G C A G T C C G T A A G C T T C G A T A G C G C A T C G A T A G T C C T G A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

PBX2/MA1113.2/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CCATACTTCA--
GTCATAAATCATT
A C G T T A G C A G T C C G T A A G C T T C G A T A G C G C A T C G A T A G T C C T G A A C G T A C G T
T C A G G A C T G T A C C T G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G A C T G C A T

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CCATACTTCA---
NNCCATAAATCATNN
A C G T A C G T T A G C A G T C C G T A A G C T T C G A T A G C G C A T C G A T A G T C C T G A A C G T A C G T A C G T
C T G A T C A G G A T C G T A C T C G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G C A T G C A T G A C T

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:5
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CCATACTTCA-
NCYATMAATCAY
A C G T T A G C A G T C C G T A A G C T T C G A T A G C G C A T C G A T A G T C C T G A A C G T
T A C G G A T C G A T C C T G A A G C T G T C A G C T A T C G A C G A T G A T C G C T A G A C T

MEIS1(var.2)/MA1639.1/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCATACTTCA--
GTCATCAATCATT
A C G T T A G C A G T C C G T A A G C T T C G A T A G C G C A T C G A T A G T C C T G A A C G T A C G T
C T A G G A C T G A T C C T G A C A G T G T A C G T C A G C T A G C A T G T A C G C T A G C A T G C A T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCATACTTCA-
GYCATCMATCAT
A C G T T A G C A G T C C G T A A G C T T C G A T A G C G C A T C G A T A G T C C T G A A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCATACTTCA
ATGCATAATTCA
A C G T A C G T T A G C A G T C C G T A A G C T T C G A T A G C G C A T C G A T A G T C C T G A
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

NR1I3/MA1534.1/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CCATACTTCA-
--AAAGTTCAT
T A G C A G T C C G T A A G C T T C G A T A G C G C A T C G A T A G T C C T G A A C G T
A C G T A C G T C G T A C T G A C T G A A C T G A C G T C A G T A G T C C T G A G A C T

PH0134.1_Pbx1/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCATACTTCA-------
TCACCCATCAATAAACA
T A G C A G T C C G T A A G C T T C G A T A G C G C A T C G A T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A