Information for 4-GCTCGTAA (Motif 32)

A C T G A G T C A C G T A G T C A C T G A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A A G T C A C T G C G T A A C T G A G T C
p-value:1e-2
log p-value:-5.419e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif33.5
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets88.0 +/- 0.0bp
Average Position of motif in Background92.0 +/- 60.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.85
Offset:0
Orientation:forward strand
Alignment:GCTCGTAA---
GCTCGTAAAAA
A C T G A G T C A C G T A G T C A C T G A C G T C G T A C G T A A C G T A C G T A C G T
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.84
Offset:-3
Orientation:forward strand
Alignment:---GCTCGTAA-----
AAACCTCGTAAAATTT
A C G T A C G T A C G T A C T G A G T C A C G T A G T C A C T G A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.81
Offset:-3
Orientation:forward strand
Alignment:---GCTCGTAA-----
AAAGCTCGTAAAATTT
A C G T A C G T A C G T A C T G A G T C A C G T A G T C A C T G A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

Hoxa11/MA0911.1/Jaspar

Match Rank:4
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GCTCGTAA----
GGTCGTAAAATT
A C T G A G T C A C G T A G T C A C T G A C G T C G T A C G T A A C G T A C G T A C G T A C G T
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T

HOXA9/MA0594.2/Jaspar

Match Rank:5
Score:0.76
Offset:1
Orientation:forward strand
Alignment:GCTCGTAA---
-GTCGTAAACG
A C T G A G T C A C G T A G T C A C T G A C G T C G T A C G T A A C G T A C G T A C G T
A C G T T C A G G A C T G T A C T C A G A G C T G C T A G C T A G C T A G A T C T A C G

HOXC12/MA0906.1/Jaspar

Match Rank:6
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GCTCGTAA---
GGTCGTAAAAA
A C T G A G T C A C G T A G T C A C T G A C G T C G T A C G T A A C G T A C G T A C G T
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A

HOXD12/MA0873.1/Jaspar

Match Rank:7
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GCTCGTAA---
AGTCGTAAAAA
A C T G A G T C A C G T A G T C A C T G A C G T C G T A C G T A A C G T A C G T A C G T
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

HOXC11/MA0651.1/Jaspar

Match Rank:8
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GCTCGTAA---
GGTCGTAAAAT
A C T G A G T C A C G T A G T C A C T G A C G T C G T A C G T A A C G T A C G T A C G T
C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T

HOXD10/MA1506.1/Jaspar

Match Rank:9
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GCTCGTAA---
GGTCGTAAAAC
A C T G A G T C A C G T A G T C A C T G A C G T C G T A C G T A A C G T A C G T A C G T
T C A G T C A G A G C T G T A C T C A G A C G T C G T A C G T A G T C A G C T A G A T C

PH0067.1_Hoxc12/Jaspar

Match Rank:10
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---GCTCGTAA------
TTAGGTCGTAAAATTTC
A C G T A C G T A C G T A C T G A G T C A C G T A G T C A C T G A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G A C T G C A T T C G A T C A G T C A G A G C T G T A C C T A G A C G T G C T A C G T A G C T A G C T A G C A T A G C T C G A T G A T C