Information for 1-WGGCTGGAAGCW (Motif 1)

C G A T A C T G A T C G G T A C A C G T C A T G A C T G G C T A C G T A A C T G A G T C C G T A
Reverse Opposite:
C G A T A C T G G T A C G C A T C G A T A G T C G A T C C G T A A C T G A T G C A G T C C G T A
p-value:1e-12
log p-value:-2.908e+01
Information Content per bp:1.779
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif5.00%
Number of Background Sequences with motif114.5
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets114.1 +/- 48.2bp
Average Position of motif in Background90.8 +/- 55.9bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-WGGCTGGAAGCW
TWGTCTGV-----
A C G T C G A T A C T G A T C G G T A C A C G T C A T G A C T G G C T A C G T A A C T G A G T C C G T A
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

E2F6/MA0471.2/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--WGGCTGGAAGCW
GGGGGCGGGAAGG-
A C G T A C G T C G A T A C T G A T C G G T A C A C G T C A T G A C T G G C T A C G T A A C T G A G T C C G T A
T A C G T C A G C T A G T C A G T A C G G T A C C T A G A T C G T A C G T C G A T C G A T C A G T A C G A C G T

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-WGGCTGGAAGCW
CWGGCGGGAA---
A C G T C G A T A C T G A T C G G T A C A C G T C A T G A C T G G C T A C G T A A C T G A G T C C G T A
T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A A C G T A C G T A C G T

Smad4/MA1153.1/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:WGGCTGGAAGCW
TGTCTAGA----
C G A T A C T G A T C G G T A C A C G T C A T G A C T G G C T A C G T A A C T G A G T C C G T A
G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----WGGCTGGAAGCW
NNTNNTGTCTGGNNTNG
A C G T A C G T A C G T A C G T A C G T C G A T A C T G A T C G G T A C A C G T C A T G A C T G G C T A C G T A A C T G A G T C C G T A
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-WGGCTGGAAGCW
CTGTCTGG-----
A C G T C G A T A C T G A T C G G T A C A C G T C A T G A C T G G C T A C G T A A C T G A G T C C G T A
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T

ZBTB12/MA1649.1/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:WGGCTGGAAGCW
-ATCTGGAACCC
C G A T A C T G A T C G G T A C A C G T C A T G A C T G G C T A C G T A A C T G A G T C C G T A
A C G T T C G A A G C T T A G C A G C T T C A G C A T G T G C A C T G A G A T C G T A C A G T C

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-WGGCTGGAAGCW-
CTGGCAGNCTGCCA
A C G T C G A T A C T G A T C G G T A C A C G T C A T G A C T G G C T A C G T A A C T G A G T C C G T A A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:WGGCTGGAAGCW
GGTCTGGCAT--
C G A T A C T G A T C G G T A C A C G T C A T G A C T G G C T A C G T A A C T G A G T C C G T A
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:10
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:WGGCTGGAAGCW
-----NGAAGC-
C G A T A C T G A T C G G T A C A C G T C A T G A C T G G C T A C G T A A C T G A G T C C G T A
A C G T A C G T A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T