Information for 6-CGAAGTGTTC (Motif 18)

A G T C A C T G C G T A C G T A A C T G A C G T A C T G A C G T A C G T A G T C
Reverse Opposite:
A C T G C G T A C G T A A G T C C G T A A G T C A C G T A C G T A G T C A C T G
p-value:1e-3
log p-value:-8.359e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets81.0 +/- 0.0bp
Average Position of motif in Background151.7 +/- 5.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0173.1_Sox21_2/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CGAAGTGTTC-----
AATCAATTGTTCCGCTA
A C G T A C G T A G T C A C T G C G T A C G T A A C T G A C G T A C T G A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T
T G A C T C A G A G C T A T G C G C T A C G T A A G C T C G A T A T C G C G A T A G C T A T G C T G A C A C T G G A T C C A G T T C G A

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CGAAGTGTTC
TTAAGTGCTT
A G T C A C T G C G T A C G T A A C T G A C G T A C T G A C G T A C G T A G T C
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CGAAGTGTTC
TTRAGTGSYK
A G T C A C T G C G T A C G T A A C T G A C G T A C T G A C G T A C G T A G T C
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

SOX14/MA1562.1/Jaspar

Match Rank:4
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CGAAGTGTTC--
--CATTGTTCGG
A G T C A C T G C G T A C G T A A C T G A C G T A C T G A C G T A C G T A G T C A C G T A C G T
A C G T A C G T G T A C T G C A C A G T A C G T T C A G C G A T G C A T G T A C C T A G A C T G

NKX2-3/MA0672.1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CGAAGTGTTC
NTCAAGTGGN-
A C G T A G T C A C T G C G T A C G T A A C T G A C G T A C T G A C G T A C G T A G T C
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CGAAGTGTTC----
----CTGTTCCTGG
A G T C A C T G C G T A C G T A A C T G A C G T A C T G A C G T A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

PB0099.1_Zfp691_1/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CGAAGTGTTC-----
CGAACAGTGCTCACTAT
A C G T A C G T A G T C A C T G C G T A C G T A A C T G A C G T A C T G A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

SOX12/MA1561.1/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CGAAGTGTTC---
--NATTGTTCGGT
A G T C A C T G C G T A C G T A A C T G A C G T A C T G A C G T A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A T G C C T G A A C G T A C G T C T A G A G C T A C G T G T A C C T A G C A T G C A G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CGAAGTGTTC
TTAAGTGGT-
A G T C A C T G C G T A C G T A A C T G A C G T A C T G A C G T A C G T A G T C
G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CGAAGTGTTC
AGAGGAAGTG---
A C G T A C G T A C G T A G T C A C T G C G T A C G T A A C T G A C G T A C T G A C G T A C G T A G T C
C G T A T A C G T C G A A C T G A C T G C G T A C G T A T A C G A G C T T A C G A C G T A C G T A C G T