Information for 4-CCATTAATCATT (Motif 4)

A G T C A G T C C G T A A C G T A C G T C G T A C G T A A C G T A G T C C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A A C G T A C T G C G T A A C G T A C G T C G T A G T C A A C G T A C T G A C T G
p-value:1e-9
log p-value:-2.185e+01
Information Content per bp:1.962
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets140.8 +/- 53.6bp
Average Position of motif in Background54.0 +/- 16.5bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:1
Score:0.80
Offset:0
Orientation:forward strand
Alignment:CCATTAATCATT
TCATCAATCA--
A G T C A G T C C G T A A C G T A C G T C G T A C G T A A C G T A G T C C G T A A C G T A C G T
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:2
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--CCATTAATCATT
RGCCATYAATCA--
A C G T A C G T A G T C A G T C C G T A A C G T A C G T C G T A C G T A A C G T A G T C C G T A A C G T A C G T
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T A C G T

MEIS1(var.2)/MA1639.1/Jaspar

Match Rank:3
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-CCATTAATCATT
GTCATCAATCATT
A C G T A G T C A G T C C G T A A C G T A C G T C G T A C G T A A C G T A G T C C G T A A C G T A C G T
C T A G G A C T G A T C C T G A C A G T G T A C G T C A G C T A G C A T G T A C G C T A G C A T G C A T

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:4
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--CCATTAATCATT-
NNCCATAAATCATNN
A C G T A C G T A G T C A G T C C G T A A C G T A C G T C G T A C G T A A C G T A G T C C G T A A C G T A C G T A C G T
C T G A T C A G G A T C G T A C T C G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G C A T G C A T G A C T

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:5
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-CCATTAATCATT
NCYATMAATCAY-
A C G T A G T C A G T C C G T A A C G T A C G T C G T A C G T A A C G T A G T C C G T A A C G T A C G T
T A C G G A T C G A T C C T G A A G C T G T C A G C T A T C G A C G A T G A T C G C T A G A C T A C G T

PBX2/MA1113.2/Jaspar

Match Rank:6
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CCATTAATCATT
GTCATAAATCATT
A C G T A G T C A G T C C G T A A C G T A C G T C G T A C G T A A C G T A G T C C G T A A C G T A C G T
T C A G G A C T G T A C C T G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G A C T G C A T

PH0080.1_Hoxd8/Jaspar

Match Rank:7
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---CCATTAATCATT--
NAGCCATTAATTANTTA
A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T C G T A C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T
C G A T G C T A C T A G G A T C G A T C C T G A C G A T G C A T C G T A C G T A C G A T C A G T C T G A G C A T G A C T C G A T G T C A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:8
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CCATTAATCATT
GYCATCMATCAT-
A C G T A G T C A G T C C G T A A C G T A C G T C G T A C G T A A C G T A G T C C G T A A C G T A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T

HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer

Match Rank:9
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:CCATTAATCATT---
---TTAATNATTAAC
A G T C A G T C C G T A A C G T A C G T C G T A C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T T C G A G T C A G C A T T A G C C G T A C A G T A G C T C G T A T G C A G A T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:10
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--CCATTAATCATT
GGCCATAAATCA--
A C G T A C G T A G T C A G T C C G T A A C G T A C G T C G T A C G T A A C G T A G T C C G T A A C G T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T