Information for 1-TGAATAACTATG (Motif 1)

A C G T A C T G C G T A C G T A A C G T C G T A C G T A A G T C A C G T C T G A A C G T A C T G
Reverse Opposite:
A G T C G T C A A G C T C G T A A C T G C G A T A C G T C G T A A C G T A C G T A G T C C G T A
p-value:1e-16
log p-value:-3.892e+01
Information Content per bp:1.950
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.11%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets75.1 +/- 45.9bp
Average Position of motif in Background103.9 +/- 38.5bp
Strand Bias (log2 ratio + to - strand density)2.2
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TGAATAACTATG--
ATGAATATTCATGAG
A C G T A C G T A C T G C G T A C G T A A C G T C G T A C G T A A G T C A C G T C T G A A C G T A C T G A C G T A C G T
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

PB0197.1_Zfp105_2/Jaspar

Match Rank:2
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----TGAATAACTATG
ATGGTTCAATAATTTTG
A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T C G T A C G T A A G T C A C G T C T G A A C G T A C T G
C T A G A G C T C A T G T A C G A C G T A G C T T G A C T G C A T G C A A G C T T C G A C G T A A G C T C A G T A G C T A C G T C T A G

POU4F2/MA0683.1/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TGAATAACTATG---
CTCATTAATTATGCAT
A C G T A C G T A C T G C G T A C G T A A C G T C G T A C G T A A G T C A C G T C T G A A C G T A C T G A C G T A C G T A C G T
A G T C G A C T T G A C T G C A A G C T G A C T C G T A C G T A C G A T G C A T C G T A C G A T C A T G G A T C C T G A G A C T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGAATAACTATG
ATGAATATTC---
A C G T A C G T A C T G C G T A C G T A A C G T C G T A C G T A A G T C A C G T C T G A A C G T A C T G
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T

PB0159.1_Rfx4_2/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGAATAACTATG---
NNNGTAACTANGNNA
A C G T A C T G C G T A C G T A A C G T C G T A C G T A A G T C A C G T C T G A A C G T A C T G A C G T A C G T A C G T
A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A

HMBOX1/MA0895.1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TGAATAACTATG
--GTTAACTAGN
A C G T A C T G C G T A C G T A A C G T C G T A C G T A A G T C A C G T C T G A A C G T A C T G
A C G T A C G T A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:7
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TGAATAACTATG
ATTTGCATAACAAAG
A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T C G T A C G T A A G T C A C G T C T G A A C G T A C T G
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGAATAACTATG
ATGMATATDC---
A C G T A C G T A C T G C G T A C G T A A C G T C G T A C G T A A G T C A C G T C T G A A C G T A C T G
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---TGAATAACTATG
ATTTGCATAACAATG
A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T C G T A C G T A A G T C A C G T C T G A A C G T A C T G
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

HLF/MA0043.3/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TGAATAACTATG
NNGTTGCATAACNN--
A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T C G T A C G T A A G T C A C G T C T G A A C G T A C T G
G C A T C A G T T C A G G A C T C A G T C T A G G A T C T C G A G A C T G T C A C G T A A G T C G T C A G C T A A C G T A C G T