Information for 6-AGCTATCWAMSA (Motif 6)

C T G A C T A G A G T C C G A T G T C A A C G T T G A C G C T A C G T A T G A C A T C G G T C A
Reverse Opposite:
C A G T A T G C A C G T A C G T C G A T A C T G G T C A A C G T G C T A T A C G A G T C G A C T
p-value:1e-5
log p-value:-1.357e+01
Information Content per bp:1.691
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif40.00%
Number of Background Sequences with motif717.1
Percentage of Background Sequences with motif0.89%
Average Position of motif in Targets103.0 +/- 30.5bp
Average Position of motif in Background94.8 +/- 68.7bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGCTATCWAMSA
RGCAATNAAA--
C T G A C T A G A G T C C G A T G T C A A C G T T G A C G C T A C G T A T G A C A T C G G T C A
C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A A C G T A C G T

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGCTATCWAMSA
HDGYAATGAAAN-
A C G T C T G A C T A G A G T C C G A T G T C A A C G T T G A C G C T A C G T A T G A C A T C G G T C A
G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A A C G T

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGCTATCWAMSA
KGCCATAAAA--
C T G A C T A G A G T C C G A T G T C A A C G T T G A C G C T A C G T A T G A C A T C G G T C A
C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A A C G T A C G T

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGCTATCWAMSA
AGGTCTCTAACC
C T G A C T A G A G T C C G A T G T C A A C G T T G A C G C T A C G T A T G A C A T C G G T C A
C T G A T C A G A C T G C A G T A G T C G A C T A G T C A C G T C G T A G C T A A T G C G A T C

HOXD9/MA0913.2/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AGCTATCWAMSA
-GCAATAAAAC-
C T G A C T A G A G T C C G A T G T C A A C G T T G A C G C T A C G T A T G A C A T C G G T C A
A C G T T C A G A G T C G T C A T C G A C G A T G C T A C G T A C G T A G T C A G A T C A C G T

CDX1/MA0878.2/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGCTATCWAMSA
GGCCATAAAAC-
C T G A C T A G A G T C C G A T G T C A A C G T T G A C G C T A C G T A T G A C A T C G G T C A
C A T G C T A G A G T C T G A C C G T A A C G T C T G A C G T A C T G A G T C A A G T C A C G T

CDX4/MA1473.1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGCTATCWAMSA
GGCAATAAAAC-
C T G A C T A G A G T C C G A T G T C A A C G T T G A C G C T A C G T A T G A C A T C G G T C A
C A T G T C A G A G T C T G C A C G T A A C G T C G T A C G T A G T C A G T C A A G T C A C G T

TCF7/MA0769.2/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AGCTATCWAMSA-
--ANATCAAAGNN
C T G A C T A G A G T C C G A T G T C A A C G T T G A C G C T A C G T A T G A C A T C G G T C A A C G T
A C G T A C G T C G T A A T G C G C T A G C A T T G A C G C T A G C T A C G T A A C T G T C A G T G C A

POL012.1_TATA-Box/Jaspar

Match Rank:9
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AGCTATCWAMSA-----
--GTATAAAAGGCGGGG
C T G A C T A G A G T C C G A T G T C A A C G T T G A C G C T A C G T A T G A C A T C G G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:10
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AGCTATCWAMSA-----
--GTATAAAAGGCGGGG
C T G A C T A G A G T C C G A T G T C A A C G T T G A C G C T A C G T A T G A C A T C G G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G