Information for 19-TTTATAGTTGAG (Motif 19)

A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C G T A C G T A C T G C G T A A C T G
Reverse Opposite:
A G T C A C G T A G T C C G T A C G T A A G T C A C G T C G T A A C G T C G T A C G T A C G T A
p-value:1e-3
log p-value:-9.057e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets123.0 +/- 0.0bp
Average Position of motif in Background65.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL012.1_TATA-Box/Jaspar

Match Rank:1
Score:0.66
Offset:-8
Orientation:reverse strand
Alignment:--------TTTATAGTTGAG
NNNNNNCTTTTATAN-----
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C G T A C G T A C T G C G T A A C T G
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T A C G T A C G T

TBP/MA0108.2/Jaspar

Match Rank:2
Score:0.66
Offset:-8
Orientation:reverse strand
Alignment:--------TTTATAGTTGAG
NNNNNNCTTTTATAN-----
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C G T A C G T A C T G C G T A A C T G
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TTTATAGTTGAG
DGWTTTATGRCN---
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C G T A C G T A C T G C G T A A C T G
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T A C G T A C G T

MEF2D/MA0773.1/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TTTATAGTTGAG
TCTATTTATAGN----
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C G T A C G T A C T G C G T A A C T G
C A G T A G T C A G C T C G T A C G A T G C A T C G A T G C T A C A G T C T G A C T A G G A C T A C G T A C G T A C G T A C G T

MEF2B/MA0660.1/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TTTATAGTTGAG
GCTATTTATAGC----
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C G T A C G T A C T G C G T A A C T G
C A T G A G T C C A G T C G T A C G A T C G A T G C A T C G T A C G A T C T G A C A T G G A T C A C G T A C G T A C G T A C G T

CDX2/MA0465.2/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TTTATAGTTGAG
NTTTTATTGCNN--
A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C G T A C G T A C T G C G T A A C T G
C G A T G C A T C G A T G C A T G C A T T C G A G A C T C A G T C T A G G A T C G C A T G A C T A C G T A C G T

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TTTATAGTTGAG
TTTTATGGCM---
A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C G T A C G T A C T G C G T A A C T G
C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C A C G T A C G T A C G T

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TTTATAGTTGAG
NTTTTATDRG----
A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C G T A C G T A C T G C G T A A C T G
C T A G G C A T A C G T G C A T G A C T C G T A G A C T C A T G C T A G A T C G A C G T A C G T A C G T A C G T

PB0069.1_Sox21_1/Jaspar

Match Rank:9
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----TTTATAGTTGAG
TTTAATTATAATTAAG
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C G T A C G T A C T G C G T A A C T G
G A C T G C A T G A C T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C A T G

HOXA13/MA0650.2/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TTTATAGTTGAG
GTTTTATTGGN---
A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C G T A C G T A C T G C G T A A C T G
C A T G C A G T A C G T A G C T A G C T C G T A A C G T A C G T C T A G A T C G A C T G A C G T A C G T A C G T