Information for 7-AGTGGAATCACA (Motif 8)

G T C A A C T G A C G T A C T G A C T G G C T A C G T A A G C T A G T C C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T A C T G C T G A C G A T C A G T A G T C A G T C C G T A A G T C C A G T
p-value:1e-10
log p-value:-2.380e+01
Information Content per bp:1.891
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets119.6 +/- 51.7bp
Average Position of motif in Background141.4 +/- 46.0bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0162.1_Six2/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGTGGAATCACA---
AATGGGGTATCACGTTT
A C G T A C G T G T C A A C T G A C G T A C T G A C T G G C T A C G T A A G C T A G T C C G T A A G T C C G T A A C G T A C G T A C G T
C T G A G C T A C A G T T C A G C T A G A C T G C T A G A C G T C T G A A C G T G A T C C T G A G A T C C A G T G C A T G A C T C A G T

PB0059.1_Six6_1/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AGTGGAATCACA---
AATAGGGTATCATATAT
A C G T A C G T G T C A A C T G A C G T A C T G A C T G G C T A C G T A A G C T A G T C C G T A A G T C C G T A A C G T A C G T A C G T
C T G A G C T A C G A T T C G A C T A G A C T G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C G T A C G A T G C T A G A C T

ZNF354C/MA0130.1/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AGTGGAATCACA
-GTGGAT-----
G T C A A C T G A C G T A C T G A C T G G C T A C G T A A G C T A G T C C G T A A G T C C G T A
A C G T A T C G A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AGTGGAATCACA
NNTGTGGATTSS--
A C G T A C G T G T C A A C T G A C G T A C T G A C T G G C T A C G T A A G C T A G T C C G T A A G T C C G T A
C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G A C G T A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGTGGAATCACA-
AGGGGAATCCCCT
G T C A A C T G A C G T A C T G A C T G G C T A C G T A A G C T A G T C C G T A A G T C C G T A A C G T
T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

CREB1/MA0018.4/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AGTGGAATCACA-
NATGACATCANNN
G T C A A C T G A C G T A C T G A C T G G C T A C G T A A G C T A G T C C G T A A G T C C G T A A C G T
C A G T T C G A G C A T A C T G C G T A T A G C T C G A G C A T T G A C G C T A A G C T G T C A C G T A

CREM/MA0609.2/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AGTGGAATCACA--
NNNGTGACGTCACNNN
A C G T A C G T G T C A A C T G A C G T A C T G A C T G G C T A C G T A A G C T A G T C C G T A A G T C C G T A A C G T A C G T
T A C G T G A C C T G A T C A G G A C T A T C G C T G A A G T C T C A G G A C T T A G C C T G A A G T C G A C T A C T G A T G C

FOXH1/MA0479.1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGTGGAATCACA
TGTGGATTNNN-
G T C A A C T G A C G T A C T G A C T G G C T A C G T A A G C T A G T C C G T A A G T C C G T A
C G A T A C T G A C G T A C T G C A T G C G T A G C A T A C G T A T C G T C A G T C G A A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:AGTGGAATCACA--
----AAACCACAGC
G T C A A C T G A C G T A C T G A C T G G C T A C G T A A G C T A G T C C G T A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:10
Score:0.57
Offset:3
Orientation:forward strand
Alignment:AGTGGAATCACA---
---NWAACCACADNN
G T C A A C T G A C G T A C T G A C T G G C T A C G T A A G C T A G T C C G T A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C