Information for 1-GTGGGCAT (Motif 4)

A C T G A C G T A C T G C T A G A C T G G A T C C G T A A C G T
Reverse Opposite:
G T C A A C G T C T A G G T A C G A T C A G T C C G T A A G T C
p-value:1e-4
log p-value:-1.129e+01
Information Content per bp:1.842
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif62.50%
Number of Background Sequences with motif6578.4
Percentage of Background Sequences with motif4.79%
Average Position of motif in Targets88.6 +/- 44.9bp
Average Position of motif in Background99.1 +/- 95.3bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIC2/MA0738.1/Jaspar

Match Rank:1
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-GTGGGCAT
NGTGGGCAT
A C G T A C T G A C G T A C T G C T A G A C T G G A T C C G T A A C G T
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GTGGGCAT
GGTTGGCAT
A C G T A C T G A C G T A C T G C T A G A C T G G A T C C G T A A C G T
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

MZF1/MA0056.2/Jaspar

Match Rank:3
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--GTGGGCAT---
NNNTGGGGATTNN
A C G T A C G T A C T G A C G T A C T G C T A G A C T G G A T C C G T A A C G T A C G T A C G T A C G T
T C G A C G T A C T A G C G A T C T A G C T A G C A T G A C T G G C T A A C G T A C G T C G A T C A T G

PB0044.1_Mtf1_1/Jaspar

Match Rank:4
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----GTGGGCAT---
GGGCCGTGTGCAAAAA
A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C T G C T A G A C T G G A T C C G T A A C G T A C G T A C G T A C G T
C A T G A C T G C T A G G A T C G T A C C A T G C A G T A C T G G A C T C A T G G T A C C G T A T G C A G T C A C T G A G C A T

RBPJ/MA1116.1/Jaspar

Match Rank:5
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GTGGGCAT-
CCTGGGAAAG
A C G T A C T G A C G T A C T G C T A G A C T G G A T C C G T A A C G T A C G T
A G T C T A G C A G C T T C A G A C T G A C T G C G T A G T C A T G C A T A C G

ZNF75D/MA1601.1/Jaspar

Match Rank:6
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GTGGGCAT
ATGTGGGAAA
A C G T A C G T A C T G A C G T A C T G C T A G A C T G G A T C C G T A A C G T
T C G A C A G T C T A G G A C T T C A G C A T G A T C G G T C A T C G A C T G A

PB0133.1_Hic1_2/Jaspar

Match Rank:7
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----GTGGGCAT----
NNNNTTGGGCACNNCN
A C G T A C G T A C G T A C G T A C T G A C G T A C T G C T A G A C T G G A T C C G T A A C G T A C G T A C G T A C G T A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:8
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GTGGGCAT-
CSTGGGAAAD
A C G T A C T G A C G T A C T G C T A G A C T G G A T C C G T A A C G T A C G T
A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A

PB0029.1_Hic1_1/Jaspar

Match Rank:9
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----GTGGGCAT---
NGTAGGTTGGCATNNN
A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C T G C T A G A C T G G A T C C G T A A C G T A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:10
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---GTGGGCAT-
NGCGTGGGCGGR
A C G T A C G T A C G T A C T G A C G T A C T G C T A G A C T G G A T C C G T A A C G T A C G T
A C G T T A C G G A T C A C T G A C G T C T A G A C T G A C T G G A T C C T A G C A T G C T A G