Information for 1-TNAAGTWAGTAM (Motif 1)

C G A T A G T C C G T A C T G A C A T G C G A T C G T A C G T A C T A G A C G T G T C A G T A C
Reverse Opposite:
A C T G A C G T G T C A A G T C A C G T C G A T C G T A G T A C G A C T A C G T C T A G C G T A
p-value:1e-6
log p-value:-1.529e+01
Information Content per bp:1.691
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif37.50%
Number of Background Sequences with motif189.6
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets122.0 +/- 34.8bp
Average Position of motif in Background94.2 +/- 109.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0093.1_Lhx3/Jaspar

Match Rank:1
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----TNAAGTWAGTAM-
GAAATTAATTAAATAAT
A C G T A C G T A C G T A C G T C G A T A G T C C G T A C T G A C A T G C G A T C G T A C G T A C T A G A C G T G T C A G T A C A C G T
T A C G C G A T G T C A T C G A G A C T G A C T C T G A C G T A C G A T A G C T C T G A C T G A C G T A C G A T G T C A G T C A A C G T

PH0149.1_Pou3f4/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TNAAGTWAGTAM---
AATTAATTAATTAATTC
A C G T A C G T C G A T A G T C C G T A C T G A C A T G C G A T C G T A C G T A C T A G A C G T G T C A G T A C A C G T A C G T A C G T
C T G A T G C A G C A T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G C T A C T G A C A G T C G A T A G T C

PH0095.1_Lhx5/Jaspar

Match Rank:3
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TNAAGTWAGTAM-
CGAATTAATTAAATACT
A C G T A C G T A C G T A C G T C G A T A G T C C G T A C T G A C A T G C G A T C G T A C G T A C T A G A C G T G T C A G T A C A C G T
T A G C C T A G G C T A C T G A G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G C T A G C A T G T C A G T A C A G C T

PH0146.1_Pou3f1/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TNAAGTWAGTAM--
NANTTAATTAATTANNN
A C G T A C G T A C G T C G A T A G T C C G T A C T G A C A T G C G A T C G T A C G T A C T A G A C G T G T C A G T A C A C G T A C G T
C A T G G C T A T G C A A G C T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G T C A T C G A A C G T G A C T

PH0142.1_Pou1f1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TNAAGTWAGTAM---
GATTAATTAATTAAGTC
A C G T A C G T C G A T A G T C C G T A C T G A C A T G C G A T C G T A C G T A C T A G A C G T G T C A G T A C A C G T A C G T A C G T
C T A G T C G A C G A T C A G T G T C A G C T A C G A T C G A T C G T A C G T A C G A T C A G T G C T A C G T A C A T G C G A T A G T C

PH0045.1_Hoxa1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TNAAGTWAGTAM---
CTGAGCTAATTACCGT
A C G T C G A T A G T C C G T A C T G A C A T G C G A T C G T A C G T A C T A G A C G T G T C A G T A C A C G T A C G T A C G T
A G T C G A C T C T A G C T G A T C A G A T G C G A C T T G C A C G T A C G A T A C G T C T G A T G A C A G T C A C T G A G C T

PH0136.1_Phox2b/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TNAAGTWAGTAM-
CNNNTTAATTAATTNNN
A C G T A C G T A C G T A C G T C G A T A G T C C G T A C T G A C A T G C G A T C G T A C G T A C T A G A C G T G T C A G T A C A C G T
A T G C T A G C G A C T T C G A G A C T G A C T T C G A C G T A G A C T A G C T C T G A C T G A A C G T C A G T T G A C A G T C A T C G

PH0173.1_Uncx/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TNAAGTWAGTAM-
CNCNTTAATTAATTANN
A C G T A C G T A C G T A C G T C G A T A G T C C G T A C T G A C A T G C G A T C G T A C G T A C T A G A C G T G T C A G T A C A C G T
T G A C A T C G A G T C T C A G A G C T G A C T T C G A C G T A G A C T A C G T C T G A C T G A A C G T A G C T C G T A A G C T A C T G

PH0101.1_Lmx1b/Jaspar

Match Rank:9
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TNAAGTWAGTAM-
NNAATTAATTAAAAANN
A C G T A C G T A C G T A C G T C G A T A G T C C G T A C T G A C A T G C G A T C G T A C G T A C T A G A C G T G T C A G T A C A C G T
T G A C C T G A G C T A C G T A A G C T G A C T G C T A C G T A G C A T C G A T C G T A C T G A C G T A G C T A G C T A G A T C A G C T

Lhx3/MA0135.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TNAAGTWAGTAM--
-AAATTAATTAATC
C G A T A G T C C G T A C T G A C A T G C G A T C G T A C G T A C T A G A C G T G T C A G T A C A C G T A C G T
A C G T C G T A T C G A C G T A A C G T A C G T C G T A C G T A G A C T A G C T G C T A C G T A G A C T A G T C