Information for 3-GATCGACG (Motif 40)

A C T G C G T A A C G T A G T C A C T G C G T A A G T C A C T G
Reverse Opposite:
A G T C A C T G A C G T A G T C A C T G C G T A A C G T A G T C
p-value:1e-2
log p-value:-6.351e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.88%
Number of Background Sequences with motif5.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets11.0 +/- 0.0bp
Average Position of motif in Background103.5 +/- 38.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0179.1_Sp100_2/Jaspar

Match Rank:1
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----GATCGACG--
NNTTTANNCGACGNA
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C G T A G T C A C T G C G T A A G T C A C T G A C G T A C G T
T A G C G C A T C G A T C G A T C G A T G T C A T G C A C A T G A G T C A C T G C G T A A G T C C T A G T A C G T C G A

PB0131.1_Gmeb1_2/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GATCGACG-------
TGGGCGACGTCGTTAA
A C G T A C T G C G T A A C G T A G T C A C T G C G T A A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T C A T G T C A G A C T G G T A C T C A G G C T A T A G C A C T G C A G T A G T C C A T G G A C T A G C T G T C A G C T A

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GATCGACG-
DGATCRATAN
A C G T A C T G C G T A A C G T A G T C A C T G C G T A A G T C A C T G A C G T
C T A G C T A G C T G A A C G T A G T C C T A G C G T A A C G T G T C A G A T C

CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GATCGACG--
TATCGATNAN
A C T G C G T A A C G T A G T C A C T G C G T A A G T C A C T G A C G T A C G T
A C G T T G C A A G C T G A T C C T A G C T G A A G C T G T C A T C G A C G T A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GATCGACG--
ATGATKGATGRC
A C G T A C G T A C T G C G T A A C G T A G T C A C T G C G T A A G T C A C T G A C G T A C G T
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GATCGACG-
TGATKGATGR
A C G T A C T G C G T A A C G T A G T C A C T G C G T A A G T C A C T G A C G T
C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G

PB0040.1_Lef1_1/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GATCGACG-----
NANAGATCAAAGGGNNN
A C G T A C G T A C G T A C G T A C T G C G T A A C G T A G T C A C T G C G T A A G T C A C T G A C G T A C G T A C G T A C G T A C G T
A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T

CUX1/MA0754.1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GATCGACG-
TAATCGATAA
A C G T A C T G C G T A A C G T A G T C A C T G C G T A A G T C A C T G A C G T
G A C T C T G A C T G A A G C T A G T C T C A G C G T A G C A T T G C A G T C A

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GATCGACG-----
NNNAGATCAAAGGANNN
A C G T A C G T A C G T A C G T A C T G C G T A A C G T A G T C A C T G C G T A A G T C A C T G A C G T A C G T A C G T A C G T A C G T
A C G T G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C T A G C A T

ZNF354C/MA0130.1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GATCGACG
-ATCCAC-
A C T G C G T A A C G T A G T C A C T G C G T A A G T C A C T G
A C G T T G C A G C A T A G T C A G T C C G T A A T G C A C G T