Information for 4-ATCACCTACCTA (Motif 5)

G C T A A C G T A T G C C G T A A G T C A G T C A C G T C G T A A G T C G T A C C G A T C G T A
Reverse Opposite:
A C G T C G T A A C T G A C T G A C G T C G T A A C T G C T A G A C G T A T C G C G T A C A G T
p-value:1e-11
log p-value:-2.613e+01
Information Content per bp:1.943
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets104.2 +/- 46.9bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:ATCACCTACCTA--
TTGACCTANTTATN
G C T A A C G T A T G C C G T A A G T C A G T C A C G T C G T A A G T C G T A C C G A T C G T A A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:ATCACCTACCTA
-NNACTTACCTN
G C T A A C G T A T G C C G T A A G T C A G T C A C G T C G T A A G T C G T A C C G A T C G T A
A C G T C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G

RORC/MA1151.1/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:ATCACCTACCTA-
-TGACCTANTTAN
G C T A A C G T A T G C C G T A A G T C A G T C A C G T C G T A A G T C G T A C C G A T C G T A A C G T
A C G T G A C T T C A G T G C A G A T C G T A C A G C T T G C A T A G C G C A T C G A T G C T A G A C T

PB0154.1_Osr1_2/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:ATCACCTACCTA----
ACATGCTACCTAATAC
G C T A A C G T A T G C C G T A A G T C A G T C A C G T C G T A A G T C G T A C C G A T C G T A A C G T A C G T A C G T A C G T
C T G A G A T C G C T A G A C T T C A G G A T C A G C T C G T A G T A C G A T C G C A T T C G A G T C A C G A T G T C A T G A C

PB0155.1_Osr2_2/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:ATCACCTACCTA----
ACTTGCTACCTACACC
G C T A A C G T A T G C C G T A A G T C A G T C A C G T C G T A A G T C G T A C C G A T C G T A A C G T A C G T A C G T A C G T
C T G A G A T C G A C T G A C T T A C G A G T C G A C T G C T A G T A C G A T C G C A T T C G A G T A C C G T A A G C T T G A C

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:ATCACCTACCTA
-TGACCTARTT-
G C T A A C G T A T G C C G T A A G T C A G T C A C G T C G T A A G T C G T A C C G A T C G T A
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:7
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:ATCACCTACCTA
-TGACCTARTT-
G C T A A C G T A T G C C G T A A G T C A G T C A C G T C G T A A G T C G T A C C G A T C G T A
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T

ZKSCAN5/MA1652.1/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--ATCACCTACCTA
NNCTCACCTCCTNN
A C G T A C G T G C T A A C G T A T G C C G T A A G T C A G T C A C G T C G T A A G T C G T A C C G A T C G T A
A G C T A G C T G T A C A G C T A G T C T C G A G A T C A G T C A C G T A G T C G A T C G A C T A G T C G A T C

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:ATCACCTACCTA
BTGACCTAVTTW
G C T A A C G T A T G C C G T A A G T C A G T C A C G T C G T A A G T C G T A C C G A T C G T A
A G T C A C G T T C A G T C G A A G T C A G T C A G C T C T G A T C A G C G A T G C A T G C A T

TCF12(var.2)/MA1648.1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:ATCACCTACCTA
CGCACCTGCCG-
G C T A A C G T A T G C C G T A A G T C A G T C A C G T C G T A A G T C G T A C C G A T C G T A
T A G C T A C G A G T C T C G A A T G C T A G C A G C T T C A G A G T C A G T C A T C G A C G T