Information for 9-TCGTCTACCCTC (Motif 9)

A C G T A G T C A C T G A C G T A G T C A C G T C G T A A G T C A G T C A G T C A C G T A G T C
Reverse Opposite:
A C T G C G T A A C T G A C T G A C T G A C G T C G T A A C T G C G T A A G T C A C T G C G T A
p-value:1e-4
log p-value:-9.985e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets6.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZSCAN29/MA1602.1/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TCGTCTACCCTC-
-CGTCTACACGGG
A C G T A G T C A C T G A C G T A G T C A C G T C G T A A G T C A G T C A G T C A C G T A G T C A C G T
A C G T A G T C C T A G A G C T G T A C A G C T G C T A G A T C C T G A A T G C T C A G C T A G T A C G

SMAD3/MA0795.1/Jaspar

Match Rank:2
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TCGTCTACCCTC
-CGTCTAGACA-
A C G T A G T C A C T G A C G T A G T C A C G T C G T A A G T C A G T C A G T C A C G T A G T C
A C G T G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T

FOXN3/MA1489.1/Jaspar

Match Rank:3
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TCGTCTACCCTC
TTGTTTAC----
A C G T A G T C A C T G A C G T A G T C A C G T C G T A A G T C A G T C A G T C A C G T A G T C
A C G T A C G T A C T G A C G T A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TCGTCTACCCTC--------
GCCTCCTCCMTCWGACTGKS
A C G T A G T C A C T G A C G T A G T C A C G T C G T A A G T C A G T C A G T C A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T A C G G A T C G A T C G A C T A G T C A G T C G C A T A G T C A G T C G T A C A G C T A G T C G C T A T C A G C T G A A G T C G A C T T A C G A C T G T A G C

SMAD5/MA1557.1/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TCGTCTACCCTC
-TGTCTAGACA-
A C G T A G T C A C T G A C G T A G T C A C G T C G T A A G T C A G T C A G T C A C G T A G T C
A C G T G A C T T C A G C A G T T G A C A C G T T G C A T A C G G T C A G A T C G C T A A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--TCGTCTACCCTC
VBSYGTCTGG----
A C G T A C G T A C G T A G T C A C T G A C G T A G T C A C G T C G T A A G T C A G T C A G T C A C G T A G T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TCGTCTACCCTC
TWGTCTGV----
A C G T A G T C A C T G A C G T A G T C A C G T C G T A A G T C A G T C A G T C A C G T A G T C
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:8
Score:0.52
Offset:4
Orientation:forward strand
Alignment:TCGTCTACCCTC-
----CTGCCCGCA
A C G T A G T C A C T G A C G T A G T C A C G T C G T A A G T C A G T C A G T C A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

Spz1/MA0111.1/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TCGTCTACCCTC
GCTGTTACCCT-
A C G T A G T C A C T G A C G T A G T C A C G T C G T A A G T C A G T C A G T C A C G T A G T C
A C T G T G A C A G C T A T C G G C A T C G A T G C T A G T A C A G T C T A G C A G C T A C G T

FOXF2/MA0030.1/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-TCGTCTACCCTC-
NTTGTTTACGTTNN
A C G T A C G T A G T C A C T G A C G T A G T C A C G T C G T A A G T C A G T C A G T C A C G T A G T C A C G T
G C T A C G A T A C G T C T A G A C G T A C G T A C G T C G T A A G T C A T C G A C G T C A G T A C G T T C A G