Information for 5-GCCCAATT (Motif 20)

A C T G A G T C A G T C T G A C C G T A C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A A C G T A C G T A C T G A C T G A C T G A G T C
p-value:1e-4
log p-value:-1.046e+01
Information Content per bp:1.937
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif88.0
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets95.1 +/- 57.1bp
Average Position of motif in Background111.9 +/- 55.6bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0089.1_Isx/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--GCCCAATT------
ACNNCTAATTAGNNNN
A C G T A C G T A C T G A G T C A G T C T G A C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T

MSX2/MA0708.1/Jaspar

Match Rank:2
Score:0.72
Offset:2
Orientation:forward strand
Alignment:GCCCAATT--
--CCAATTAA
A C T G A G T C A G T C T G A C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A

MSX1/MA0666.1/Jaspar

Match Rank:3
Score:0.71
Offset:2
Orientation:forward strand
Alignment:GCCCAATT--
--CCAATTAG
A C T G A G T C A G T C T G A C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G

Msx3/MA0709.1/Jaspar

Match Rank:4
Score:0.71
Offset:2
Orientation:forward strand
Alignment:GCCCAATT--
--CCAATTAA
A C T G A G T C A G T C T G A C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T T A G C G A T C T C G A T G C A A C G T G A C T C G T A T C G A

LHX9/MA0701.2/Jaspar

Match Rank:5
Score:0.70
Offset:2
Orientation:forward strand
Alignment:GCCCAATT--
--CTAATTAA
A C T G A G T C A G T C T G A C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A G T C A G C T G T C A C G T A A C G T A C G T C T G A T C G A

PH0107.1_Msx2/Jaspar

Match Rank:6
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---GCCCAATT------
GAAGACCAATTAGCGCT
A C G T A C G T A C G T A C T G A G T C A G T C T G A C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T C A G T G C A C T G A T A C G C T G A A T G C G A T C C G T A G T C A C G A T G A C T C T G A C A T G G A T C C A T G G A T C A G C T

RAX2/MA0717.1/Jaspar

Match Rank:7
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GCCCAATT--
--CCAATTAA
A C T G A G T C A G T C T G A C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A G T C G A T C T C G A G T C A G A C T A G C T G C T A T C G A

PRRX2/MA0075.3/Jaspar

Match Rank:8
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GCCCAATT--
--CTAATTAA
A C T G A G T C A G T C T G A C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A G T C A G C T T G C A C G T A A C G T A C G T T C G A C T G A

GBX1/MA0889.1/Jaspar

Match Rank:9
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GCCCAATT---
-ACTAATTAGC
A C T G A G T C A G T C T G A C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T T C G A A T G C G A C T T C G A T G C A G A C T G A C T G C T A T A C G A G T C

LHX2/MA0700.2/Jaspar

Match Rank:10
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GCCCAATT---
AACCAATTAAT
A C T G A G T C A G T C T G A C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C G T A C G T A A T G C G A T C G C T A G C T A C G A T C G A T G C T A C G T A G C A T