Information for 2-GCATAAGGATTA (Motif 2)

A T C G G T A C G T C A C G A T C G T A C G T A A C T G A T C G G T C A A C G T A C G T C G T A
Reverse Opposite:
A C G T G T C A C G T A A C G T A T G C A G T C A C G T A C G T C G T A A C G T A C T G A T G C
p-value:1e-7
log p-value:-1.625e+01
Information Content per bp:1.805
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif27.27%
Number of Background Sequences with motif67.6
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets62.0 +/- 19.2bp
Average Position of motif in Background85.6 +/- 75.5bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:1
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:GCATAAGGATTA--
----VRGGATTARN
A T C G G T A C G T C A C G A T C G T A C G T A A C T G A T C G G T C A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

OTX2/MA0712.2/Jaspar

Match Rank:2
Score:0.69
Offset:3
Orientation:forward strand
Alignment:GCATAAGGATTA---
---AAGGGATTAGAA
A T C G G T A C G T C A C G A T C G T A C G T A A C T G A T C G G T C A A C G T A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T G C T A C G T A C T A G C T A G C T A G G T C A C A G T G C A T C G T A C T A G C G T A C G T A

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:GCATAAGGATTA
----NGGGATTA
A T C G G T A C G T C A C G A T C G T A C G T A A C T G A T C G G T C A A C G T A C G T C G T A
A C G T A C G T A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A

BARX2/MA1471.1/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GCATAAGGATTA-
-AAAAACCATTAC
A T C G G T A C G T C A C G A T C G T A C G T A A C T G A T C G G T C A A C G T A C G T C G T A A C G T
A C G T C T G A C G T A G C T A C G T A T G C A G A T C T G A C T C G A C A G T G A C T C G T A T A G C

PITX1/MA0682.2/Jaspar

Match Rank:5
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:GCATAAGGATTA-
-----NGGATTAN
A T C G G T A C G T C A C G A T C G T A C G T A A C T G A T C G G T C A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C A T G T C A G C A T G G T C A A C G T A C G T C G T A C T A G

GSC/MA0648.1/Jaspar

Match Rank:6
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:GCATAAGGATTA--
----NNGGATTAGN
A T C G G T A C G T C A C G A T C G T A C G T A A C T G A T C G G T C A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:7
Score:0.65
Offset:6
Orientation:reverse strand
Alignment:GCATAAGGATTA--
------GGATTAGC
A T C G G T A C G T C A C G A T C G T A C G T A A C T G A T C G G T C A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

PITX3/MA0714.1/Jaspar

Match Rank:8
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:GCATAAGGATTA--
-----GGGATTANN
A T C G G T A C G T C A C G A T C G T A C G T A A C T G A T C G G T C A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

Crx/MA0467.1/Jaspar

Match Rank:9
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GCATAAGGATTA-
--AAGAGGATTAG
A T C G G T A C G T C A C G A T C G T A C G T A A C T G A T C G G T C A A C G T A C G T C G T A A C G T
A C G T A C G T T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:10
Score:0.65
Offset:5
Orientation:forward strand
Alignment:GCATAAGGATTA-
-----RGGATTAR
A T C G G T A C G T C A C G A T C G T A C G T A A C T G A T C G G T C A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G