Information for 24-GTCATTATTGGA (Motif 27)

A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C G T A C G T A C T G A C T G C G T A
Reverse Opposite:
A C G T A G T C A G T C C G T A C G T A A C G T C G T A C G T A A C G T A C T G C G T A A G T C
p-value:1e-3
log p-value:-8.539e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets162.0 +/- 0.0bp
Average Position of motif in Background27.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX6-3/MA1530.1/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GTCATTATTGGA
CTCATTAAA---
A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C G T A C G T A C T G A C T G C G T A
T A G C A G C T A G T C C G T A A C G T A G C T C T G A G C T A G C T A A C G T A C G T A C G T

HOXA4/MA1496.1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GTCATTATTGGA
GTCATTAG----
A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C G T A C G T A C T G A C T G C G T A
T C A G A G C T T G A C C T G A A C G T A G C T T C G A T C A G A C G T A C G T A C G T A C G T

POU6F1(var.2)/MA1549.1/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GTCATTATTGGA
NNCTCATTAT----
A C G T A C G T A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C G T A C G T A C T G A C T G C G T A
G C T A A T G C T G A C C G A T T G A C G T C A A C G T A G C T C T G A G A C T A C G T A C G T A C G T A C G T

HOXC4/MA1504.1/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GTCATTATTGGA
GTCATTAA----
A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C G T A C G T A C T G A C T G C G T A
T C A G G A C T G T A C C T G A A C G T A C G T C T G A T C G A A C G T A C G T A C G T A C G T

HOXB4/MA1499.1/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GTCATTATTGGA
ATCATTAG----
A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C G T A C G T A C T G A C T G C G T A
T C G A A G C T G T A C C T G A A C G T A C G T C T G A T C A G A C G T A C G T A C G T A C G T

HOXD4/MA1507.1/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GTCATTATTGGA
ATCATTAG----
A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C G T A C G T A C T G A C T G C G T A
T C G A A G C T G T A C C T G A A C G T A C G T C T G A C T A G A C G T A C G T A C G T A C G T

PH0055.1_Hoxa7_2/Jaspar

Match Rank:7
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GTCATTATTGGA-
GTAGTAATTAATGGAA
A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C G T A C G T A C T G A C T G C G T A A C G T
A C T G A C G T T G C A A C T G G C A T G T C A C G T A A C G T C A G T C G T A T G C A A C G T T C A G A T C G G T C A T G C A

MEOX2/MA0706.1/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GTCATTATTGGA
AGTAATTAAC---
A C G T A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C G T A C G T A C T G A C T G C G T A
C T G A T A C G G A C T T G C A G T C A C A G T A G C T C T G A C G T A T G A C A C G T A C G T A C G T

GSX2/MA0893.2/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GTCATTATTGGA
GTAATTAG----
A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C G T A C G T A C T G A C T G C G T A
T A C G G A C T T G C A C T G A A G C T A C G T C T G A C T A G A C G T A C G T A C G T A C G T

HOXB6/MA1500.1/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GTCATTATTGGA
GTAATTAN----
A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C G T A C G T A C T G A C T G C G T A
T C A G A G C T T G C A T G C A A C G T C A G T C T G A T C G A A C G T A C G T A C G T A C G T