Information for 5-CGCTTCACAG (Motif 12)

A G T C A C T G A G T C A C G T A C G T A G T C C G T A A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A C G T A C T G C G T A C G T A A C T G A G T C A C T G
p-value:1e-10
log p-value:-2.457e+01
Information Content per bp:1.530
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets67.0 +/- 36.2bp
Average Position of motif in Background24.3 +/- 15.2bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CGCTTCACAG
-GCTTCC---
A G T C A C T G A G T C A C G T A C G T A G T C C G T A A G T C C G T A A C T G
A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:CGCTTCACAG-
-----CACAGN
A G T C A C T G A G T C A C G T A C G T A G T C C G T A A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

PH0158.1_Rhox11_2/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CGCTTCACAG------
TCNCTTTACAGCGNNNT
A C G T A G T C A C T G A G T C A C G T A C G T A G T C C G T A A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T

MEIS2/MA0774.1/Jaspar

Match Rank:4
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CGCTTCACAG-
---TTGACAGC
A G T C A C T G A G T C A C G T A C G T A G T C C G T A A G T C C G T A A C T G A C G T
A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:5
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CGCTTCACAG---
---TTMACACCTT
A G T C A C T G A G T C A C G T A C G T A G T C C G T A A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T

Rhox11/MA0629.1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CGCTTCACAG------
TCNNTTTACAGCGNNNT
A C G T A G T C A C T G A G T C A C G T A C G T A G T C C G T A A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

PH0157.1_Rhox11_1/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CGCTTCACAG------
TCNNTTTACAGCGNNNT
A C G T A G T C A C T G A G T C A C G T A C G T A G T C C G T A A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

TBX20/MA0689.1/Jaspar

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CGCTTCACAG---
--CTTCACACCTA
A G T C A C T G A G T C A C G T A C G T A G T C C G T A A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A G T C G C A T G C A T G T A C G T C A T G A C G T C A G T A C A G T C G A C T G C T A

RBPJ/MA1116.1/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CGCTTCACAG-
-NNTTCCCANN
A G T C A C T G A G T C A C G T A C G T A G T C C G T A A G T C C G T A A C T G A C G T
A C G T A T G C A C G T C A G T G C A T T G A C T G A C A G T C C T G A A T C G T C A G

TCF7/MA0769.2/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CGCTTCACAG--
-ANATCAAAGNN
A G T C A C T G A G T C A C G T A C G T A G T C C G T A A G T C C G T A A C T G A C G T A C G T
A C G T C G T A A T G C G C T A G C A T T G A C G C T A G C T A C G T A A C T G T C A G T G C A