Information for 1-AAACACAAGTGA (Motif 2)

C G T A C G T A C G T A A G T C C G T A A G T C C T G A C G T A C A T G C A G T A C T G C G T A
Reverse Opposite:
A C G T A G T C G C T A G A T C A C G T A G C T A C T G A C G T A C T G C G A T A C G T A C G T
p-value:1e-8
log p-value:-1.956e+01
Information Content per bp:1.853
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif28.57%
Number of Background Sequences with motif82.3
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets145.5 +/- 40.4bp
Average Position of motif in Background86.0 +/- 67.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AAACACAAGTGA
AAACCACANN---
A C G T C G T A C G T A C G T A A G T C C G T A A G T C C T G A C G T A C A T G C A G T A C T G C G T A
G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AAACACAAGTGA--
CTCACACAATGGCGC
A C G T C G T A C G T A C G T A A G T C C G T A A G T C C T G A C G T A C A T G C A G T A C T G C G T A A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AAACACAAGTGA
NAAACCACAG----
A C G T A C G T C G T A C G T A C G T A A G T C C G T A A G T C C T G A C G T A C A T G C A G T A C T G C G T A
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T A C G T A C G T A C G T

SOX15/MA1152.1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AAACACAAGTGA
-AAAACAATAG-
C G T A C G T A C G T A A G T C C G T A A G T C C T G A C G T A C A T G C A G T A C T G C G T A
A C G T C G T A C T G A C T G A G C T A A G T C C G T A G T C A G C A T C T G A T C A G A C G T

PB0016.1_Foxj1_1/Jaspar

Match Rank:5
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----AAACACAAGTGA
AAAGTAAACAAAAATT-
A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G T A A G T C C G T A A G T C C T G A C G T A C A T G C A G T A C T G C G T A
G C T A C G A T G C T A C T A G G A C T G T C A G C T A C G T A G A T C C G T A G T C A C G T A G T C A C G T A C A G T C A G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:6
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AAACACAAGTGA
-RNAACAATGG-
C G T A C G T A C G T A A G T C C G T A A G T C C T G A C G T A C A T G C A G T A C T G C G T A
A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AAACACAAGTGA--
AAACAGACAAAGGAAT
A C G T A C G T C G T A C G T A C G T A A G T C C G T A A G T C C T G A C G T A C A T G C A G T A C T G C G T A A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AAACACAAGTGA
BMRVACAAWGGV
C G T A C G T A C G T A A G T C C G T A A G T C C T G A C G T A C A T G C A G T A C T G C G T A
A T G C T G A C C T G A T A C G C G T A A G T C C G T A C G T A C G T A C T A G T C A G T G C A

PB0141.1_Isgf3g_2/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AAACACAAGTGA
GCAAAACATTACTA-
A C G T A C G T A C G T C G T A C G T A C G T A A G T C C G T A A G T C C T G A C G T A C A T G C A G T A C T G C G T A
A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A A C G T

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AAACACAAGTGA
-AAAACAAAGG-
C G T A C G T A C G T A A G T C C G T A A G T C C T G A C G T A C A T G C A G T A C T G C G T A
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T