Information for 9-TGACAGACGC (Motif 28)

A C G T A C T G C G T A A G T C C G T A A C T G C G T A A G T C A C T G A G T C
Reverse Opposite:
A C T G A G T C A C T G A C G T A G T C A C G T A C T G A C G T A G T C C G T A
p-value:1e-3
log p-value:-7.569e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets100.0 +/- 0.0bp
Average Position of motif in Background85.9 +/- 51.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---TGACAGACGC
AGGTGHCAGACA-
A C G T A C G T A C G T A C G T A C T G C G T A A G T C C G T A A C T G C G T A A G T C A C T G A G T C
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:2
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-TGACAGACGC
TTGACAG----
A C G T A C G T A C T G C G T A A G T C C G T A A C T G C G T A A G T C A C T G A G T C
G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:3
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TGACAGACGC
TTGACAGC---
A C G T A C G T A C T G C G T A A G T C C G T A A C T G C G T A A G T C A C T G A G T C
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:4
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----TGACAGACGC--
NNATTGACAGGTGCTT
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C C G T A A C T G C G T A A G T C A C T G A G T C A C G T A C G T
T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T

PB0151.1_Myf6_2/Jaspar

Match Rank:5
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--TGACAGACGC---
AGCAACAGCCGCACC
A C G T A C G T A C G T A C T G C G T A A G T C C G T A A C T G C G T A A G T C A C T G A G T C A C G T A C G T A C G T
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C

MEIS3/MA0775.1/Jaspar

Match Rank:6
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TGACAGACGC
TTGACAGG---
A C G T A C G T A C T G C G T A A G T C C G T A A C T G C G T A A G T C A C T G A G T C
C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--TGACAGACGC
VBTGWCAGCB--
A C G T A C G T A C G T A C T G C G T A A G T C C G T A A C T G C G T A A G T C A C T G A G T C
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T

OSR2/MA1646.1/Jaspar

Match Rank:8
Score:0.70
Offset:0
Orientation:forward strand
Alignment:TGACAGACGC--
AAACAGAAGCAG
A C G T A C T G C G T A A G T C C G T A A C T G C G T A A G T C A C T G A G T C A C G T A C G T
G T C A G T C A T G C A T A G C C T G A T A C G C G T A T C G A C T A G A G T C G T C A T C A G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:TGACAGACGC--
--CCAGACRSVB
A C G T A C T G C G T A A G T C C G T A A C T G C G T A A G T C A C T G A G T C A C G T A C G T
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TGACAGACGC
AGGTGNCAGACAG
A C G T A C G T A C G T A C G T A C T G C G T A A G T C C G T A A C T G C G T A A G T C A C T G A G T C
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G