Information for 2-GTCAARTTAAAA (Motif 2)

A C T G C A G T A G T C C T G A C G T A C T A G A G C T A C G T C T G A C G T A T C G A C G T A
Reverse Opposite:
C G A T A C G T C G A T A G C T G T C A C T G A A G T C A C G T A G C T A C T G G T C A G T A C
p-value:1e-5
log p-value:-1.209e+01
Information Content per bp:1.714
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif926.2
Percentage of Background Sequences with motif0.66%
Average Position of motif in Targets66.2 +/- 48.5bp
Average Position of motif in Background101.7 +/- 97.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LBX1/MA0618.1/Jaspar

Match Rank:1
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GTCAARTTAAAA
--CTAATTAA--
A C T G C A G T A G T C C T G A C G T A C T A G A G C T A C G T C T G A C G T A T C G A C G T A
A C G T A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A A C G T A C G T

ARGFX/MA1463.1/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GTCAARTTAAAA
-TCTAATTAAA-
A C T G C A G T A G T C C T G A C G T A C T A G A G C T A C G T C T G A C G T A T C G A C G T A
A C G T C A G T G A T C G A C T G T C A C G T A A C G T A G C T C T G A C T G A G T C A A C G T

MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GTCAARTTAAAA---
TTCAAAWTAAAAGTC
A C T G C A G T A G T C C T G A C G T A C T A G A G C T A C G T C T G A C G T A T C G A C G T A A C G T A C G T A C G T
C A G T G A C T A G T C G C T A C T G A G T C A C G T A A G C T G T C A C T G A C T G A C T G A A C T G A G C T G A T C

LHX9/MA0701.2/Jaspar

Match Rank:4
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GTCAARTTAAAA
--CTAATTAA--
A C T G C A G T A G T C C T G A C G T A C T A G A G C T A C G T C T G A C G T A T C G A C G T A
A C G T A C G T A G T C A G C T G T C A C G T A A C G T A C G T C T G A T C G A A C G T A C G T

PRRX2/MA0075.3/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GTCAARTTAAAA
--CTAATTAA--
A C T G C A G T A G T C C T G A C G T A C T A G A G C T A C G T C T G A C G T A T C G A C G T A
A C G T A C G T A G T C A G C T T G C A C G T A A C G T A C G T T C G A C T G A A C G T A C G T

PHOX2B/MA0681.2/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GTCAARTTAAAA
TTTAATCAAATTATAT
A C G T A C G T A C G T A C G T A C T G C A G T A G T C C T G A C G T A C T A G A G C T A C G T C T G A C G T A T C G A C G T A
C G A T G C A T G C A T C G T A C G T A G C A T G A T C G C T A G C T A C G T A C G A T G C A T C G T A C G A T G C T A G C A T

PAX4/MA0068.2/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GTCAARTTAAAA
--CTAATTAG--
A C T G C A G T A G T C C T G A C G T A C T A G A G C T A C G T C T G A C G T A T C G A C G T A
A C G T A C G T A G T C C A G T G C T A C G T A A C G T G C A T G T C A T C A G A C G T A C G T

PH0168.1_Hnf1b/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GTCAARTTAAAA---
ANNNCTAGTTAACNGNN
A C G T A C G T A C T G C A G T A G T C C T G A C G T A C T A G A G C T A C G T C T G A C G T A T C G A C G T A A C G T A C G T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

mix-a/MA0621.1/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GTCAARTTAAAA
-NCTAATTAANN
A C T G C A G T A G T C C T G A C G T A C T A G A G C T A C G T C T G A C G T A T C G A C G T A
A C G T G T C A G A T C A C G T C G T A C G T A A C G T A C G T C G T A C T G A G A C T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GTCAARTTAAAA
AAGGCAAGTGT---
A C G T A C G T A C T G C A G T A G T C C T G A C G T A C T A G A G C T A C G T C T G A C G T A T C G A C G T A
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T