Information for 25-TTGGATTAATTA (Motif 25)

A C G T A C G T A C T G A C T G C G T A A C G T A C G T C G T A C G T A A C G T A C G T C G T A
Reverse Opposite:
A C G T C G T A C G T A A C G T A C G T C G T A C G T A A C G T A G T C A G T C C G T A C G T A
p-value:1e-3
log p-value:-9.112e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.0 +/- 0.0bp
Average Position of motif in Background192.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0079.1_Hoxd3/Jaspar

Match Rank:1
Score:0.80
Offset:0
Orientation:forward strand
Alignment:TTGGATTAATTA----
TTGAGTTAATTAACCT
A C G T A C G T A C T G A C T G C G T A A C G T A C G T C G T A C G T A A C G T A C G T C G T A A C G T A C G T A C G T A C G T
G A C T C G A T C A T G C T G A C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A T G C A G C T

PH0020.1_Dlx1/Jaspar

Match Rank:2
Score:0.76
Offset:0
Orientation:forward strand
Alignment:TTGGATTAATTA--
CTGAGGTAATTAAT
A C G T A C G T A C T G A C T G C G T A A C G T A C G T C G T A C G T A A C G T A C G T C G T A A C G T A C G T
A G T C A G C T C T A G T G C A C T A G C T A G G A C T T C G A C G T A C G A T A C G T C T G A C G T A A G C T

mix-a/MA0621.1/Jaspar

Match Rank:3
Score:0.76
Offset:3
Orientation:forward strand
Alignment:TTGGATTAATTA--
---AATTAATTAGT
A C G T A C G T A C T G A C T G C G T A A C G T A C G T C G T A C G T A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T C G T A C T G A G A C T A C G T C G T A C G T A A C G T A C G T C G T A C T A G A C G T

PH0062.1_Hoxb7/Jaspar

Match Rank:4
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:TTGGATTAATTA----
TNNCATTAATTANTNC
A C G T A C G T A C T G A C T G C G T A A C G T A C G T C G T A C G T A A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A G C T C G A T T A C G G T A C T G C A A C G T G A C T G T C A G C T A C G A T C A G T C T G A T G A C A C G T T C G A T A G C

LMX1A/MA0702.2/Jaspar

Match Rank:5
Score:0.74
Offset:5
Orientation:forward strand
Alignment:TTGGATTAATTA-
-----TTAATTAA
A C G T A C G T A C T G A C T G C G T A A C G T A C G T C G T A C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A G C T A G C T C G T A G T C A A G C T A C G T T C G A T G C A

PH0090.1_Lbx2/Jaspar

Match Rank:6
Score:0.74
Offset:1
Orientation:forward strand
Alignment:TTGGATTAATTA------
-TGCATTAATTAATGCGA
A C G T A C G T A C T G A C T G C G T A A C G T A C G T C G T A C G T A A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T T A C G G T A C G T C A G A C T G A C T C G T A T C G A A G C T C G A T C T G A C T G A A G C T A C T G T A G C C T A G T C G A

PH0110.1_Nkx1-2/Jaspar

Match Rank:7
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:TTGGATTAATTA------
-TGNACTAATTAGTGNAN
A C G T A C G T A C T G A C T G C G T A A C G T A C G T C G T A C G T A A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T T A C G G A T C T G C A G A T C G A C T G T C A C G T A C G A T A C G T C T G A C T A G A G C T A C T G T G A C G T C A G T A C

PH0050.1_Hoxa3/Jaspar

Match Rank:8
Score:0.74
Offset:0
Orientation:forward strand
Alignment:TTGGATTAATTA--
TTGAGGTAATTAGT
A C G T A C G T A C T G A C T G C G T A A C G T A C G T C G T A C G T A A C G T A C G T C G T A A C G T A C G T
C A G T A G C T T A C G G T C A T C A G A T C G A G C T G T C A G T C A A C G T A C G T C T G A T C A G A G C T

PH0125.1_Obox5_2/Jaspar

Match Rank:9
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---TTGGATTAATTA--
NANAGGGATTAATTATN
A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C G T A C G T C G T A C G T A A C G T A C G T C G T A A C G T A C G T
T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C

PH0153.1_Prop1/Jaspar

Match Rank:10
Score:0.74
Offset:1
Orientation:forward strand
Alignment:TTGGATTAATTA------
-CGAATTAATTAAGAAAC
A C G T A C G T A C T G A C T G C G T A A C G T A C G T C G T A C G T A A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T G A C T C A G T G C A T C G A G A C T G A C T C G T A C G T A G A C T A C G T C T G A C T G A A C T G C G T A C G T A C T G A G A T C