Information for 3-AATATTCT (Motif 40)

C G T A G T C A C G A T C G T A A C G T A G C T G T A C C A G T
Reverse Opposite:
G T C A A C T G C T G A C G T A A C G T C G T A A C G T A C G T
p-value:1e-3
log p-value:-7.067e+00
Information Content per bp:1.793
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif42.86%
Number of Background Sequences with motif6746.5
Percentage of Background Sequences with motif9.02%
Average Position of motif in Targets102.0 +/- 43.1bp
Average Position of motif in Background99.5 +/- 75.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.83
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.83
Offset:-6
Orientation:reverse strand
Alignment:------AATATTCT
NNTNNCAATATTAG
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G T C A C G A T C G T A A C G T A G C T G T A C C A G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.83
Offset:-6
Orientation:reverse strand
Alignment:------AATATTCT
NNTNNCAATATTAG
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G T C A C G A T C G T A A C G T A G C T G T A C C A G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-AATATTCT-
GAATATTCAT
A C G T C G T A G T C A C G A T C G T A A C G T A G C T G T A C C A G T A C G T
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AATATTCT-
AAGATATCCTT
A C G T A C G T C G T A G T C A C G A T C G T A A C G T A G C T G T A C C A G T A C G T
G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T

MF0010.1_Homeobox_class/Jaspar

Match Rank:5
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-AATATTCT
AATTATT--
A C G T C G T A G T C A C G A T C G T A A C G T A G C T G T A C C A G T
G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AATATTCT-
GHATATKCAT
A C G T C G T A G T C A C G A T C G T A A C G T A G C T G T A C C A G T A C G T
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AATATTCT----
ATGAATATTCATGAG
A C G T A C G T A C G T C G T A G T C A C G A T C G T A A C G T A G C T G T A C C A G T A C G T A C G T A C G T A C G T
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

PB0165.1_Sox11_2/Jaspar

Match Rank:8
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------AATATTCT
NNCNNAACAATTNT
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G T C A C G A T C G T A A C G T A G C T G T A C C A G T
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AATATTCT---
-CTATTTTTGG
C G T A G T C A C G A T C G T A A C G T A G C T G T A C C A G T A C G T A C G T A C G T
A C G T A T G C A G C T G T C A C G A T C G A T A G C T G A C T G C A T C T G A C A T G

FOXC1/MA0032.2/Jaspar

Match Rank:10
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------AATATTCT
TATGTAAATAT---
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G T C A C G A T C G T A A C G T A G C T G T A C C A G T
G C A T C T G A C G A T T C A G G C A T G T C A G T C A C T G A A G C T C T G A G C A T A C G T A C G T A C G T