Information for 3-GGTTTTGT (Motif 20)

A C T G A C T G C G A T A C G T A C G T A C G T A C T G A G C T
Reverse Opposite:
C T G A A G T C G T C A C G T A C G T A C G T A T G A C A G T C
p-value:1e-6
log p-value:-1.469e+01
Information Content per bp:1.888
Number of Target Sequences with motif84.0
Percentage of Target Sequences with motif10.07%
Number of Background Sequences with motif2705.3
Percentage of Background Sequences with motif5.68%
Average Position of motif in Targets108.0 +/- 58.4bp
Average Position of motif in Background100.3 +/- 58.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GGTTTTGT----
BCCWTTGTBYKV
A C T G A C T G C G A T A C G T A C G T A C G T A C T G A G C T A C G T A C G T A C G T A C G T
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A T G C G A C T A C T G T A C G

SOX15/MA1152.1/Jaspar

Match Rank:2
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GGTTTTGT---
-CTATTGTTTT
A C T G A C T G C G A T A C G T A C G T A C G T A C T G A G C T A C G T A C G T A C G T
A C G T A G T C G A C T C G T A A C G T C G A T T C A G C G A T G A C T G A C T G C A T

SOX10/MA0442.2/Jaspar

Match Rank:3
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GGTTTTGT---
NNCTTTGTTNN
A C T G A C T G C G A T A C G T A C G T A C G T A C T G A G C T A C G T A C G T A C G T
A C G T A G C T T G A C C G A T C G A T C G A T T C A G C G A T A C G T G A C T G A C T

Sox3/MA0514.1/Jaspar

Match Rank:4
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GGTTTTGT---
-CCTTTGTTTT
A C T G A C T G C G A T A C G T A C G T A C G T A C T G A G C T A C G T A C G T A C G T
A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

SOX4/MA0867.2/Jaspar

Match Rank:5
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GGTTTTGT--
NCCTTTGTTC
A C T G A C T G C G A T A C G T A C G T A C G T A C T G A G C T A C G T A C G T
A G T C A G T C G A T C C G A T A G C T A G C T T A C G C G A T A G C T G A T C

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:6
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GGTTTTGT---
-CCATTGTTNY
A C T G A C T G C G A T A C G T A C G T A C G T A C T G A G C T A C G T A C G T A C G T
A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GGTTTTGT-
-CCWTTGTY
A C T G A C T G C G A T A C G T A C G T A C G T A C T G A G C T A C G T
A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

MF0011.1_HMG_class/Jaspar

Match Rank:8
Score:0.67
Offset:3
Orientation:forward strand
Alignment:GGTTTTGT-
---ATTGTT
A C T G A C T G C G A T A C G T A C G T A C G T A C T G A G C T A C G T
A C G T A C G T A C G T G C T A A C G T G A C T C T A G G C A T A G C T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GGTTTTGT---
-CCWTTGTYYB
A C T G A C T G C G A T A C G T A C G T A C G T A C T G A G C T A C G T A C G T A C G T
A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

PB0071.1_Sox4_1/Jaspar

Match Rank:10
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GGTTTTGT------
TNNTCCTTTGTTCTNNT
A C G T A C G T A C G T A C T G A C T G C G A T A C G T A C G T A C G T A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T