Information for 9-ATGCATACAAAC (Motif 9)

C T G A A C G T A C T G A T G C G T C A A C G T C G T A A T G C C G T A C G T A C T G A A G T C
Reverse Opposite:
A C T G A G C T A C G T A C G T A T C G A C G T C G T A A C G T A T C G G T A C C G T A A G C T
p-value:1e-11
log p-value:-2.672e+01
Information Content per bp:1.847
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif13.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets112.3 +/- 70.8bp
Average Position of motif in Background106.0 +/- 47.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--ATGCATACAAAC-
ATTTGCATACAATGG
A C G T A C G T C T G A A C G T A C T G A T G C G T C A A C G T C G T A A T G C C G T A C G T A C T G A A G T C A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:ATGCATACAAAC---
CCGCATAGCAACGGA
C T G A A C G T A C T G A T G C G T C A A C G T C G T A A T G C C G T A C G T A C T G A A G T C A C G T A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PH0148.1_Pou3f3/Jaspar

Match Rank:3
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------ATGCATACAAAC
TNNATTATGCATANNTT-
A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C G T A C T G A T G C G T C A A C G T C G T A A T G C C G T A C G T A C T G A A G T C
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:ATGCATACAAAC
ATGMATATDC--
C T G A A C G T A C T G A T G C G T C A A C G T C G T A A T G C C G T A C G T A C T G A A G T C
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:ATGCATACAAAC--
--SCCTAGCAACAG
C T G A A C G T A C T G A T G C G T C A A C G T C G T A A T G C C G T A C G T A C T G A A G T C A C G T A C G T
A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

PB0018.1_Foxk1_1/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---ATGCATACAAAC--
AAAATGTAAACAAACAG
A C G T A C G T A C G T C T G A A C G T A C T G A T G C G T C A A C G T C G T A A T G C C G T A C G T A C T G A A G T C A C G T A C G T
C G T A C T G A C G T A C G T A A C G T T C A G C G A T G T C A G C T A C G T A A G T C C G T A G C T A C G T A T A G C T C G A A T C G

PB0006.1_Bcl6b_1/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---ATGCATACAAAC-
NNNATTCCTCGAAAGN
A C G T A C G T A C G T C T G A A C G T A C T G A T G C G T C A A C G T C G T A A T G C C G T A C G T A C T G A A G T C A C G T
A T G C C T G A C G T A C G T A C G A T G C A T G T A C A G T C G C A T T G A C C T A G G C T A C G T A C T G A C T A G G C T A

BCL6B/MA0731.1/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---ATGCATACAAAC--
TGAATTCCTAGAAAGCA
A C G T A C G T A C G T C T G A A C G T A C T G A T G C G T C A A C G T C G T A A T G C C G T A C G T A C T G A A G T C A C G T A C G T
A C G T A C T G C T G A C T G A A C G T A G C T A G T C A G T C A C G T T G C A A C T G G T C A C G T A C G T A C T A G G A T C C T G A

PB0054.1_Rfx3_1/Jaspar

Match Rank:9
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----ATGCATACAAAC-------
TGTGACCCTTAGCAACCGATTAA
A C G T A C G T A C G T A C G T C T G A A C G T A C T G A T G C G T C A A C G T C G T A A T G C C G T A C G T A C T G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

DMRT3/MA0610.1/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:ATGCATACAAAC
NTTGATACATT-
C T G A A C G T A C T G A T G C G T C A A C G T C G T A A T G C C G T A C G T A C T G A A G T C
C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T A C G T