Information for 17-CCAAGAGGTCCC (Motif 18)

A G T C A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C G T A G T C A G T C A G T C
Reverse Opposite:
A C T G A C T G A C T G C G T A A G T C A G T C A C G T A G T C A C G T A C G T A C T G A C T G
p-value:1e-3
log p-value:-9.120e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets18.0 +/- 0.0bp
Average Position of motif in Background133.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0053.1_Rara_1/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCAAGAGGTCCC---
TCTCAAAGGTCACCTG
A C G T A G T C A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C G T A G T C A G T C A G T C A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

PB0049.1_Nr2f2_1/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCAAGAGGTCCC---
TCTCAAAGGTCACGAG
A C G T A G T C A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C G T A G T C A G T C A G T C A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:3
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CCAAGAGGTCCC
---AGRGGTCA-
A G T C A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C G T A G T C A G T C A G T C
A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:4
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CCAAGAGGTCCC
GAGGTCAAAAGGTCA-
A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C G T A G T C A G T C A G T C
T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A A C G T

SCRT2/MA0744.2/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CCAAGAGGTCCC-
AAAGCAACAGGTGGTT
A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C G T A G T C A G T C A G T C A C G T
C T G A T C G A C G T A A C T G G A T C G T C A C T G A T A G C G C T A C T A G C A T G G A C T C A T G C A T G G A C T G C A T

SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCAAGAGGTCCC
GCAACAGGTG--
A G T C A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C G T A G T C A G T C A G T C
A C T G A G T C G T C A C G T A A G T C C G T A C T A G C T A G G A C T C A T G A C G T A C G T

Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CCAAGAGGTCCC
-HAWGRGGCCM-
A G T C A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C G T A G T C A G T C A G T C
A C G T G A C T T C G A C G A T T A C G C T A G T A C G A C T G A T G C G T A C G T A C A C G T

SCRT1/MA0743.2/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CCAAGAGGTCCC-
AATTCAACAGGTGGTT
A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C G T A G T C A G T C A G T C A C G T
C G T A C T G A C G A T A C G T G A T C G T C A C T G A A T G C G C T A C T A G C T A G G A C T C A T G C A T G A G C T G C A T

PLAGL2/MA1548.1/Jaspar

Match Rank:9
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CCAAGAGGTCCC-
---NGGGGGCCCN
A G T C A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C G T A G T C A G T C A G T C A C G T
A C G T A C G T A C G T C G T A C T A G C T A G A C T G A C T G A T C G A T G C A G T C G T A C C G T A

NFIC/MA0161.2/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CCAAGAGGTCCC
NNTGCCAAGNN-----
A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C G T A G T C A G T C A G T C
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A A C G T A C G T A C G T A C G T A C G T