Information for 24-AGAGAGACAA (Motif 34)

T G C A C T A G C G T A A C T G C T G A T A C G T G C A G T A C G C T A T G C A
Reverse Opposite:
A C G T C G A T A C T G A C G T A T G C G A C T T G A C G C A T G A T C A C G T
p-value:1e-4
log p-value:-9.307e+00
Information Content per bp:1.647
Number of Target Sequences with motif158.0
Percentage of Target Sequences with motif19.36%
Number of Background Sequences with motif6917.4
Percentage of Background Sequences with motif14.51%
Average Position of motif in Targets104.9 +/- 49.3bp
Average Position of motif in Background99.5 +/- 59.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PKNOX1/MA0782.2/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGAGAGACAA---
TTTGAGTGACAGCTA
A C G T A C G T T G C A C T A G C G T A A C T G C T G A T A C G T G C A G T A C G C T A T G C A A C G T A C G T A C G T
C G A T G C A T C G A T T C A G C T G A A C T G C G A T A T C G C T G A G A T C C G T A A C T G T A G C A G C T C T G A

PB0166.1_Sox12_2/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGAGAGACAA------
AAACAGACAAAGGAAT
T G C A C T A G C G T A A C T G C T G A T A C G T G C A G T A C G C T A T G C A A C G T A C G T A C G T A C G T A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---AGAGAGACAA
AGGTGNCAGACAG
A C G T A C G T A C G T T G C A C T A G C G T A A C T G C T G A T A C G T G C A G T A C G C T A T G C A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AGAGAGACAA
AGGTGHCAGACA-
A C G T A C G T A C G T T G C A C T A G C G T A A C T G C T G A T A C G T G C A G T A C G C T A T G C A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer

Match Rank:5
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----AGAGAGACAA
RHHCAGAGAGGB--
A C G T A C G T A C G T A C G T T G C A C T A G C G T A A C T G C T G A T A C G T G C A G T A C G C T A T G C A
T C A G G T C A G C T A A G T C C G T A A T C G T C G A T C A G C G T A A C T G A C T G A C T G A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:6
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:AGAGAGACAA---
---AAAACAATGG
T G C A C T A G C G T A A C T G C T G A T A C G T G C A G T A C G C T A T G C A A C G T A C G T A C G T
A C G T A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

PBX3/MA1114.1/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AGAGAGACAA----
GGGTGAGTGACAGGCGG
A C G T A C G T A C G T T G C A C T A G C G T A A C T G C T G A T A C G T G C A G T A C G C T A T G C A A C G T A C G T A C G T A C G T
T A C G A C T G A C T G C G A T T C A G C G T A A C T G C A G T T A C G C T G A T A G C C T G A A C T G T A C G A T G C T C A G A T C G

PRDM1/MA0508.3/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AGAGAGACAA
NAGAGAAAGNA
A C G T T G C A C T A G C G T A A C T G C T G A T A C G T G C A G T A C G C T A T G C A
C T G A C T G A C A T G G C T A C A T G G C T A C G T A G C T A C A T G C G T A C T G A

PB0021.1_Gata3_1/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AGAGAGACAA---------
TTTTTAGAGATAAGAAATAAAG
A C G T A C G T A C G T T G C A C T A G C G T A A C T G C T G A T A C G T G C A G T A C G C T A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A G T G C A T C A G T C G A T C T G A C A T G G C T A A C T G C G T A C G A T G C T A C G T A T A C G T G C A C T G A G C T A A C G T C G T A G T C A T C G A C A T G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:AGAGAGACAA---
---RNAACAATGG
T G C A C T A G C G T A A C T G C T G A T A C G T G C A G T A C G C T A T G C A A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G