Information for 2-GCACAAAAAA (Motif 3)

A C T G A G T C C G T A G T A C C G T A C T G A C G T A C T G A C G T A C G T A
Reverse Opposite:
A C G T A C G T A G C T C G A T A G C T A C G T A C T G A C G T A C T G A G T C
p-value:1e-8
log p-value:-1.869e+01
Information Content per bp:1.892
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif35.71%
Number of Background Sequences with motif321.7
Percentage of Background Sequences with motif0.53%
Average Position of motif in Targets103.4 +/- 59.3bp
Average Position of motif in Background97.4 +/- 72.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----GCACAAAAAA--
CGAAGCACACAAAATA
A C G T A C G T A C G T A C G T A C T G A G T C C G T A G T A C C G T A C T G A C G T A C T G A C G T A C G T A A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

ZNF384/MA1125.1/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GCACAAAAAA--
TTTAAAAAAAAA
A C T G A G T C C G T A G T A C C G T A C T G A C G T A C T G A C G T A C G T A A C G T A C G T
C G A T G C A T C G A T G T C A C G T A G C T A C G T A C G T A G C T A G C T A G C T A G C T A

PB0145.1_Mafb_2/Jaspar

Match Rank:3
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----GCACAAAAAA
CAATTGCAAAAATAT
A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A G T A C C G T A C T G A C G T A C T G A C G T A C G T A
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T

Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer

Match Rank:4
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GCACAAAAAA
BMRVACAAWGGV
A C G T A C G T A C T G A G T C C G T A G T A C C G T A C T G A C G T A C T G A C G T A C G T A
A T G C T G A C C T G A T A C G C G T A A G T C C G T A C G T A C G T A C T A G T C A G T G C A

PB0071.1_Sox4_1/Jaspar

Match Rank:5
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GCACAAAAAA---
AGAAGAACAAAGGACTA
A C G T A C G T A C G T A C G T A C T G A G T C C G T A G T A C C G T A C T G A C G T A C T G A C G T A C G T A A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

CEBPD/MA0836.2/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GCACAAAAAA
TATTGCACAATAT-
A C G T A C G T A C G T A C G T A C T G A G T C C G T A G T A C C G T A C T G A C G T A C T G A C G T A C G T A
C A G T T C G A G A C T C A G T C A T G G A T C C T G A G A T C G T C A C T G A A G C T G C T A G C A T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GCACAAAAAA---
ATAAGAACAAAGGACTA
A C G T A C G T A C G T A C G T A C T G A G T C C G T A G T A C C G T A C T G A C G T A C T G A C G T A C G T A A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0104.1_Zscan4_1/Jaspar

Match Rank:8
Score:0.62
Offset:-7
Orientation:forward strand
Alignment:-------GCACAAAAAA
TACATGTGCACATAAAA
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A G T A C C G T A C T G A C G T A C T G A C G T A C G T A
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A

PB0182.1_Srf_2/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCACAAAAAA-----
GTTAAAAAAAAAAATTA
A C G T A C G T A C T G A G T C C G T A G T A C C G T A C T G A C G T A C T G A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T

FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCACAAAAAA--
GCTAARTAAACA
A C T G A G T C C G T A G T A C C G T A C T G A C G T A C T G A C G T A C G T A A C G T A C G T
A T C G G A T C G C A T T C G A G C T A T C G A G C A T G T C A C G T A G T C A G A T C G C T A