Information for 3-ATAAAGTACG (Motif 9)

C G T A A C G T C G T A C G T A C G T A A C T G A C G T C G T A A G T C A C T G
Reverse Opposite:
A G T C A C T G A C G T C G T A A G T C A C G T A C G T A C G T C G T A A C G T
p-value:1e-3
log p-value:-8.928e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif9.09%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets185.0 +/- 0.0bp
Average Position of motif in Background121.6 +/- 38.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:1
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----ATAAAGTACG
NGYCATAAAWCH--
A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C T G A C G T C G T A A G T C A C T G
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T

ZKSCAN1/MA1585.1/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:forward strand
Alignment:ATAAAGTACG--
--ATAGTAGGTG
C G T A A C G T C G T A C G T A C G T A A C T G A C G T C G T A A G T C A C T G A C G T A C G T
A C G T A C G T T C G A A G C T T G C A C T A G A C G T G T C A A T C G C A T G A G C T T A C G

PH0116.1_Nkx2-9/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--ATAAAGTACG-----
NATTTAAGTACTTNAAA
A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C T G A C G T C G T A A G T C A C T G A C G T A C G T A C G T A C G T A C G T
C T G A G C T A C G A T G C A T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T G C T A C G T A C T G A G C T A

PH0117.1_Nkx3-1/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--ATAAAGTACG-----
NATTTAAGTACTTANNA
A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C T G A C G T C G T A A G T C A C T G A C G T A C G T A C G T A C G T A C G T
T A G C G C T A C G A T G A C T C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T A G G C A T G C T A

PH0112.1_Nkx2-3/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-ATAAAGTACG-----
CNTTAAGTACTTAANG
A C G T C G T A A C G T C G T A C G T A C G T A A C T G A C G T C G T A A G T C A C T G A C G T A C G T A C G T A C G T A C G T
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---ATAAAGTACG
GTCATAAAAN---
A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C T G A C G T C G T A A G T C A C T G
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--ATAAAGTACG-----
ACTCCAAGTACTTGGAA
A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C T G A C G T C G T A A G T C A C T G A C G T A C G T A C G T A C G T A C G T
T C G A G T A C C G A T A T G C T A G C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A C T G T C A G T G C A G T C A

PB0094.1_Zfp128_1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:ATAAAGTACG-------
TTNGGGTACGCCNNANN
C G T A A C G T C G T A C G T A C G T A A C T G A C G T C G T A A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A G T C T G A T C A G A T C G A C T G A C G T C G T A A G T C C T A G G A T C G T A C G T C A G T C A C G T A C T A G T G C A

PB0106.1_Arid5a_2/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-ATAAAGTACG------
CATACAATACGAAATAA
A C G T C G T A A C G T C G T A C G T A C G T A A C T G A C G T C G T A A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A T G C C T A G G A C T C G T A T G A C C G T A T G C A A C G T T G C A T A G C T A C G C T G A C T G A C G T A A G C T T C G A T C G A

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---ATAAAGTACG
CYHATAAAAN---
A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C T G A C G T C G T A A G T C A C T G
T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C A C G T A C G T A C G T