Information for 3-CGCGGTGA (Motif 34)

A G T C A C T G A G T C A C T G A C T G A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A A G T C A G T C A C T G A G T C A C T G
p-value:1e-2
log p-value:-6.139e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif19.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets177.0 +/- 0.0bp
Average Position of motif in Background114.5 +/- 92.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GFI1/MA0038.2/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CGCGGTGA----
TGCAGTGATTTN
A G T C A C T G A G T C A C T G A C T G A C G T A C T G C G T A A C G T A C G T A C G T A C G T
C A G T C T A G G A T C G T C A A T C G C G A T C A T G C G T A C G A T A C G T A C G T T C A G

SREBF1/MA0595.1/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CGCGGTGA-
GTGGGGTGAT
A C G T A G T C A C T G A G T C A C T G A C T G A C G T A C T G C G T A A C G T
T C A G A C G T A T C G C T A G A T C G A T C G A C G T A C T G C G T A A G C T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CGCGGTGA---
-GCAGTGATTT
A G T C A C T G A G T C A C T G A C T G A C G T A C T G C G T A A C G T A C G T A C G T
A C G T C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T

RUNX2/MA0511.2/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CGCGGTGA
TTGCGGTTT
A C G T A G T C A C T G A G T C A C T G A C T G A C G T A C T G C G T A
A G C T A C G T A C T G G A T C A C T G A C T G A C G T G A C T C G A T

SREBF2/MA0596.1/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CGCGGTGA-
ATGGGGTGAT
A C G T A G T C A C T G A G T C A C T G A C T G A C G T A C T G C G T A A C G T
T C G A A C G T A T C G C T A G A T C G T A C G A C G T A C T G C G T A A G C T

ZKSCAN5/MA1652.1/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CGCGGTGA---
GGAGGAGGTGAGAA
A C G T A C G T A C G T A G T C A C T G A G T C A C T G A C T G A C G T A C T G C G T A A C G T A C G T A C G T
C T A G T C A G C T G A C T A G T C A G T G C A C T A G C T A G A G C T T C A G T C G A C A T G T C G A T C G A

ZBTB14/MA1650.1/Jaspar

Match Rank:7
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CGCGGTGA
GNGTGCGCGGGN-
A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C A C T G A C T G A C G T A C T G C G T A
T A C G A T C G T A C G A C G T A T C G A T G C T A C G A T G C T A C G A T C G T A C G A T C G A C G T

PH0158.1_Rhox11_2/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CGCGGTGA-----
AGGACGCTGTAAAGGGA
A C G T A C G T A C G T A C G T A G T C A C T G A G T C A C T G A C T G A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

Rhox11/MA0629.1/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CGCGGTGA-----
AAGACGCTGTAAAGCGA
A C G T A C G T A C G T A C G T A G T C A C T G A G T C A C T G A C T G A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CGCGGTGA-----
AAGACGCTGTAAAGCGA
A C G T A C G T A C G T A C G T A G T C A C T G A G T C A C T G A C T G A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A