Information for 21-GTTTTAAAACCA (Motif 29)

A C T G A C G T A C G T A C G T A C G T C G T A C G T A C G T A C G T A A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G A C G T A C G T A C G T A C G T C G T A C G T A C G T A C G T A A G T C
p-value:1e-3
log p-value:-8.332e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.0 +/- 0.0bp
Average Position of motif in Background192.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GTTTTAAAACCA
--TTTGAAACCG
A C T G A C G T A C G T A C G T A C G T C G T A C G T A C G T A C G T A A G T C A G T C C G T A
A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

PB0187.1_Tcf7_2/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GTTTTAAAACCA-
CCGTATTATAAACAA
A C G T A C G T A C T G A C G T A C G T A C G T A C G T C G T A C G T A C G T A C G T A A G T C A G T C C G T A A C G T
G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A

HOXD10/MA1506.1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GTTTTAAAACCA
NTTTTACGACC-
A C T G A C G T A C G T A C G T A C G T C G T A C G T A C G T A C G T A A G T C A G T C C G T A
C T A G C G A T C A G T A C G T G C A T G T C A A G T C A C T G T C G A A G T C A G T C A C G T

HOXC12/MA0906.1/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GTTTTAAAACCA
NTTTTACGACC-
A C T G A C G T A C G T A C G T A C G T C G T A C G T A C G T A C G T A A G T C A G T C C G T A
C G A T C A G T C G A T G C A T C G A T T C G A A G T C C A T G C T G A A G T C G A T C A C G T

CDX4/MA1473.1/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GTTTTAAAACCA
GTTTTATTGCC-
A C T G A C G T A C G T A C G T A C G T C G T A C G T A C G T A C G T A A G T C A G T C C G T A
T C A G C A G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G T C G T A C A C G T

PH0012.1_Cdx1/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GTTTTAAAACCA--
NAATTTTATTACCTNN
A C G T A C G T A C T G A C G T A C G T A C G T A C G T C G T A C G T A C G T A C G T A A G T C A G T C C G T A A C G T A C G T
C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A

LIN54/MA0619.1/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GTTTTAAAACCA
NATTCAAAT---
A C T G A C G T A C G T A C G T A C G T C G T A C G T A C G T A C G T A A G T C A G T C C G T A
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T

HOXC9/MA0485.2/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GTTTTAAAACCA
NTTTTACGAC--
A C T G A C G T A C G T A C G T A C G T C G T A C G T A C G T A C G T A A G T C A G T C C G T A
C T G A C G A T A C G T A C G T C G A T G T C A A G T C A C T G C T G A A G T C A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GTTTTAAAACCA
DGWTTTATGRCN-
A C G T A C T G A C G T A C G T A C G T A C G T C G T A C G T A C G T A C G T A A G T C A G T C C G T A
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T

HOXC11/MA0651.1/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GTTTTAAAACCA
NTTTTACGACC-
A C T G A C G T A C G T A C G T A C G T C G T A C G T A C G T A C G T A A G T C A G T C C G T A
C G T A C G A T C A G T C G A T G C A T C G T A A G T C C T A G C T G A A G T C G A T C A C G T