Information for 20-TCAGACGATC (Motif 35)

A C G T A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C G T A G T C
Reverse Opposite:
A C T G C G T A A C G T A G T C A C T G A C G T A G T C A C G T A C T G C G T A
p-value:1e-3
log p-value:-7.442e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif9.09%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets165.0 +/- 0.0bp
Average Position of motif in Background93.6 +/- 48.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TCAGACGATC
CCAGACRSVB
A C G T A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C G T A G T C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TCAGACGATC
BCAGACWA--
A C G T A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C G T A G T C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TCAGACGATC
CCAGACAG--
A C G T A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C G T A G T C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

SREBF1(var.2)/MA0829.2/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TCAGACGATC-
NNATCAGGTGATNN
A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C G T A G T C A C G T
C T G A T C A G T C G A C G A T T A G C C G T A A T C G T A C G C G A T T A C G C G T A A G C T A G T C G A C T

HAND2/MA1638.1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TCAGACGATC
ACCAGATGGC-
A C G T A C G T A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C G T A G T C
C T G A T G A C A T G C T C G A A C T G T C G A A G C T T C A G A C T G G A T C A C G T

SREBF2/MA0596.1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TCAGACGATC
ATCACCCCAT-
A C G T A C G T A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C G T A G T C
C T G A A C G T A G T C C G T A A T G C T A G C A G T C A T G C C G T A A G C T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----TCAGACGATC--
CAAATCCAGACATCACA
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C G T A G T C A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TCAGACGATC
ATCACCCCAT-
A C G T A C G T A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C G T A G T C
T C G A G C A T A T G C C T G A A T G C T A G C A G T C G T A C T C G A A G C T A C G T

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TCAGACGATC
GTCACATGAY-
A C G T A C G T A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C G T A G T C
T C A G G A C T G T A C G T C A A G T C T C G A G C A T A T C G T C G A A G T C A C G T

SREBF1/MA0595.1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TCAGACGATC
ATCACCCCAC-
A C G T A C G T A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C G T A G T C
T C G A A C G T A G T C C G T A A T G C T A G C A G T C T A G C C G T A A G T C A C G T