Information for 18-YGTGTCGT (Motif 40)

A G C T A C T G C G A T A C T G A C G T A T G C A T C G A C G T
Reverse Opposite:
G T C A A T G C T A C G C G T A A G T C G C T A G T A C C T G A
p-value:1e-2
log p-value:-5.126e+00
Information Content per bp:1.738
Number of Target Sequences with motif95.0
Percentage of Target Sequences with motif2.47%
Number of Background Sequences with motif862.6
Percentage of Background Sequences with motif1.88%
Average Position of motif in Targets99.6 +/- 54.6bp
Average Position of motif in Background91.2 +/- 58.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0032.1_IRC900814_1/Jaspar

Match Rank:1
Score:0.78
Offset:-4
Orientation:reverse strand
Alignment:----YGTGTCGT----
GNNATTTGTCGTAANN
A C G T A C G T A C G T A C G T A G C T A C T G C G A T A C T G A C G T A T G C A T C G A C G T A C G T A C G T A C G T A C G T
T C A G G A T C G C A T C G T A C G A T C G A T G A C T A C T G G A C T A G T C A C T G C A G T T C G A C T G A G C T A G C A T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:2
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-YGTGTCGT---
NNHTGTGGTTWN
A C G T A G C T A C T G C G A T A C T G A C G T A T G C A T C G A C G T A C G T A C G T A C G T
C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G

RUNX1/MA0002.2/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-YGTGTCGT--
GTCTGTGGTTT
A C G T A G C T A C T G C G A T A C T G A C G T A T G C A T C G A C G T A C G T A C G T
A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:YGTGTCGT--
GCTGTGGTTT
A G C T A C T G C G A T A C T G A C G T A T G C A T C G A C G T A C G T A C G T
A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:YGTGTCGT---
-CTGTGGTTTN
A G C T A C T G C G A T A C T G A C G T A T G C A T C G A C G T A C G T A C G T A C G T
A C G T G A T C A C G T A C T G A G C T A C T G A C T G A G C T A G C T C G A T A T C G

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:6
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:YGTGTCGT--
NNTGTGGTTT
A G C T A C T G C G A T A C T G A C G T A T G C A T C G A C G T A C G T A C G T
A C G T G A C T C A G T A C T G G A C T A C T G A C T G A G C T A G C T C G A T

Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer

Match Rank:7
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:YGTGTCGT-----
-NHGTCGTGAYDN
A G C T A C T G C G A T A C T G A C G T A T G C A T C G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T A G G T C A C A T G A C G T A T G C T C A G C A G T A C T G G T C A A G T C C G A T A G T C

Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--YGTGTCGT--
YSTGGGTGGTCT
A C G T A C G T A G C T A C T G C G A T A C T G A C G T A T G C A T C G A C G T A C G T A C G T
A G T C A T C G G C A T C A T G A C T G A T C G C G A T C T A G A C T G A G C T T G A C G A C T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--YGTGTCGT--
CGTGGGTGGTCC
A C G T A C G T A G C T A C T G C G A T A C T G A C G T A T G C A T C G A C G T A C G T A C G T
A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C

MEIS1/MA0498.2/Jaspar

Match Rank:10
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:YGTGTCGT
-NTGTCAN
A G C T A C T G C G A T A C T G A C G T A T G C A T C G A C G T
A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A