Information for 5-CAATGGAA (Motif 41)

A G T C C G T A C G T A A C G T A C T G A C T G C G T A C G T A
Reverse Opposite:
A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G
p-value:1e-2
log p-value:-5.556e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif18.18%
Number of Background Sequences with motif740.7
Percentage of Background Sequences with motif0.86%
Average Position of motif in Targets123.0 +/- 71.0bp
Average Position of motif in Background103.0 +/- 76.4bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX2/MA0143.4/Jaspar

Match Rank:1
Score:0.80
Offset:-3
Orientation:forward strand
Alignment:---CAATGGAA
AAACAATGGAA
A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C T G A C T G C G T A C G T A
C G T A C G T A G C T A G A T C G C T A T C G A C G A T C T A G C T A G C G T A G C T A

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:2
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:CAATGGAA---
-AATGGAAAAT
A G T C C G T A C G T A A C G T A C T G A C T G C G T A C G T A A C G T A C G T A C G T
A C G T T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T

NFATC4/MA1525.1/Jaspar

Match Rank:3
Score:0.78
Offset:1
Orientation:forward strand
Alignment:CAATGGAA---
-AATGGAAAAT
A G T C C G T A C G T A A C G T A C T G A C T G C G T A C G T A A C G T A C G T A C G T
A C G T T C G A C T G A G A C T A C T G A C T G G T C A C G T A G T C A T G C A G C A T

SOX13/MA1120.1/Jaspar

Match Rank:4
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---CAATGGAA
AAACAATGGCA
A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C T G A C T G C G T A C G T A
C T G A T C G A C T G A A G T C G C T A C T G A G C A T C T A G T C A G T G A C G C T A

NFATC3/MA0625.1/Jaspar

Match Rank:5
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:CAATGGAA---
-AATGGAAAAT
A G T C C G T A C G T A A C G T A C T G A C T G C G T A C G T A A C G T A C G T A C G T
A C G T C G T A C T G A G A C T T A C G C A T G T C G A C G T A G C T A C T G A G C A T

NFATC1/MA0624.1/Jaspar

Match Rank:6
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:CAATGGAA---
-NNTGGAAANN
A G T C C G T A C G T A A C G T A C T G A C T G C G T A C G T A A C G T A C G T A C G T
A C G T C G T A C T G A G A C T C T A G A C T G C T G A C T G A G C T A C G T A G C A T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.75
Offset:-4
Orientation:reverse strand
Alignment:----CAATGGAA
VRAACAATGG--
A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C T G A C T G C G T A C G T A
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:8
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---CAATGGAA
GAACAATGG--
A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C T G A C T G C G T A C G T A
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T

NFAT5/MA0606.1/Jaspar

Match Rank:9
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:CAATGGAA---
-NATGGAAAAN
A G T C C G T A C G T A A C G T A C T G A C T G C G T A C G T A A C G T A C G T A C G T
A C G T G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T

Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer

Match Rank:10
Score:0.73
Offset:-6
Orientation:forward strand
Alignment:------CAATGGAA
VVRRAACAATGG--
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C T G A C T G C G T A C G T A
T G A C T A G C T C A G T C G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T A C G A C G T A C G T