Information for 2-AATTGCTATAAA (Motif 3)

C G T A C G T A A C G T A C G T A C T G A G T C A C G T C G T A A C G T C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T C G T A A C G T C G T A A C T G A G T C C G T A C G T A A C G T A C G T
p-value:1e-4
log p-value:-1.054e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.0 +/- 0.0bp
Average Position of motif in Background6.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.2/Jaspar

Match Rank:1
Score:0.68
Offset:2
Orientation:forward strand
Alignment:AATTGCTATAAA--
--AAGCAATAAAAA
C G T A C G T A A C G T A C G T A C T G A G T C A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T
A C G T A C G T C T G A C G T A C T A G G A T C G T C A C T G A A G C T C G T A C G T A G C T A C G T A G C T A

BCL6B/MA0731.1/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--AATTGCTATAAA---
TGAATTCCTAGAAAGCA
A C G T A C G T C G T A C G T A A C G T A C G T A C T G A G T C A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T
A C G T A C T G C T G A C T G A A C G T A G C T A G T C A G T C A C G T T G C A A C T G G T C A C G T A C G T A C T A G G A T C C T G A

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:AATTGCTATAAA-
---KGCCATAAAA
C G T A C G T A A C G T A C G T A C T G A G T C A C G T C G T A A C G T C G T A C G T A C G T A A C G T
A C G T A C G T A C G T C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A

PB0062.1_Sox12_1/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AATTGCTATAAA-
TAATTGTTCTAAAC
A C G T C G T A C G T A A C G T A C G T A C T G A G T C A C G T C G T A A C G T C G T A C G T A C G T A A C G T
G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C

CDX1/MA0878.2/Jaspar

Match Rank:5
Score:0.66
Offset:3
Orientation:forward strand
Alignment:AATTGCTATAAA--
---GGCCATAAAAC
C G T A C G T A A C G T A C G T A C T G A G T C A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T C A T G C T A G A G T C T G A C C G T A A C G T C T G A C G T A C T G A G T C A A G T C

POL012.1_TATA-Box/Jaspar

Match Rank:6
Score:0.66
Offset:5
Orientation:forward strand
Alignment:AATTGCTATAAA--------
-----GTATAAAAGGCGGGG
C G T A C G T A A C G T A C G T A C T G A G T C A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:7
Score:0.66
Offset:5
Orientation:forward strand
Alignment:AATTGCTATAAA--------
-----GTATAAAAGGCGGGG
C G T A C G T A A C G T A C G T A C T G A G T C A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

CDX4/MA1473.1/Jaspar

Match Rank:8
Score:0.65
Offset:3
Orientation:forward strand
Alignment:AATTGCTATAAA--
---GGCAATAAAAC
C G T A C G T A A C G T A C G T A C T G A G T C A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T C A T G T C A G A G T C T G C A C G T A A C G T C G T A C G T A G T C A G T C A A G T C

PB0067.1_Sox18_1/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AATTGCTATAAA-
TTCAATTGTTCTAAAA
A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C T G A G T C A C G T C G T A A C G T C G T A C G T A C G T A A C G T
A G C T G C A T A G T C G T C A C G T A C G A T C G A T T C A G C G A T G C A T A G T C G C A T G T C A C G T A G T C A G C T A

HOXD9/MA0913.2/Jaspar

Match Rank:10
Score:0.65
Offset:4
Orientation:forward strand
Alignment:AATTGCTATAAA--
----GCAATAAAAC
C G T A C G T A A C G T A C G T A C T G A G T C A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T T C A G A G T C G T C A T C G A C G A T G C T A C G T A C G T A G T C A G A T C