Information for 21-TTAGCTCA (Motif 47)

A C G T A C G T C G T A A C T G A G T C A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A C T G A G T C A C G T C G T A C G T A
p-value:1e-2
log p-value:-6.688e+00
Information Content per bp:1.530
Number of Target Sequences with motif103.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif229.8
Percentage of Background Sequences with motif0.61%
Average Position of motif in Targets99.7 +/- 57.0bp
Average Position of motif in Background96.5 +/- 57.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0045.1_Hoxa1/Jaspar

Match Rank:1
Score:0.67
Offset:-7
Orientation:reverse strand
Alignment:-------TTAGCTCA-
ACGGTAATTAGCTCAG
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C A C G T A G T C C G T A A C G T
T C G A T G A C C T A G A C T G A G C T G T C A C G T A A C G T A C G T C T G A T A C G A G T C G A C T G A T C C T G A C T A G

CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TTAGCTCA---
ATGACGTCATBB
A C G T A C G T A C G T C G T A A C T G A G T C A C G T A G T C C G T A A C G T A C G T A C G T
T C G A A C G T A C T G C G T A A G T C T C A G C G A T G T A C C G T A A G C T A G C T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:3
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----TTAGCTCA-
TATAAGTAGGTCAA
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C A C G T A G T C C G T A A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TTAGCTCA
AAYTAGGTCA
A C G T A C G T A C G T A C G T C G T A A C T G A G T C A C G T A G T C C G T A
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TTAGCTCA
AAYTAGGTCA
A C G T A C G T A C G T A C G T C G T A A C T G A G T C A C G T A G T C C G T A
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

PH0081.1_Pdx1/Jaspar

Match Rank:6
Score:0.64
Offset:-7
Orientation:forward strand
Alignment:-------TTAGCTCA-
AAGGTAATTAGCTCAT
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C A C G T A G T C C G T A A C G T
T G C A T G C A C T A G A T C G G A C T T G C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T T A G C C G T A C A G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TTAGCTCA
TRAGGTCA
A C G T A C G T C G T A A C T G A G T C A C G T A G T C C G T A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:8
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TTAGCTCA-
WAABTAGGTCAV
A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C A C G T A G T C C G T A A C G T
C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G

RORB/MA1150.1/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TTAGCTCA-
AATTAGGTCAC
A C G T A C G T A C G T A C G T C G T A A C T G A G T C A C G T A G T C C G T A A C G T
C G T A G C T A C G A T A C G T C T G A A C T G C T A G A G C T G A T C C T G A G A T C

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:10
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TTAGCTCA
NNCTTATCTN-
A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C A C G T A G T C C G T A
A G C T A G T C A T G C A G C T A C G T C G T A A C G T A G T C C G A T A T G C A C G T