Information for 5-AGAKCTTCATAG (Motif 7)

C G T A A C T G C G T A A C T G G T A C A C G T A G C T A G T C C G T A A G C T C T G A A C T G
Reverse Opposite:
A G T C G A C T T C G A A C G T A C T G C T G A C G T A A C T G T G A C A C G T G T A C C G A T
p-value:1e-6
log p-value:-1.550e+01
Information Content per bp:1.780
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif28.57%
Number of Background Sequences with motif251.0
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets64.3 +/- 46.3bp
Average Position of motif in Background106.0 +/- 69.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:1
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:AGAKCTTCATAG--
----TTTCATKGCC
C G T A A C T G C G T A A C T G G T A C A C G T A G C T A G T C C G T A A G C T C T G A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T G C A T A C G T C G A T A G T C G T C A A G C T C A G T C T A G A T G C G A T C

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.60
Offset:3
Orientation:forward strand
Alignment:AGAKCTTCATAG
---GCTTCC---
C G T A A C T G C G T A A C T G G T A C A C G T A G C T A G T C C G T A A G C T C T G A A C T G
A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:AGAKCTTCATAG--
----TTTNATTGCY
C G T A A C T G C G T A A C T G G T A C A C G T A G C T A G T C C G T A A G C T C T G A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T G T C A A C G T C A G T C T A G A T G C G A T C

Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:AGAKCTTCATAG--
----TTTCATTRCC
C G T A A C T G C G T A A C T G G T A C A C G T A G C T A G T C C G T A A G C T C T G A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T G A C T A G C T G A C T A T G C G C T A A C G T A C G T C T G A A T G C G A T C

PB0178.1_Sox8_2/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AGAKCTTCATAG----
--ACATTCATGACACG
C G T A A C T G C G T A A C T G G T A C A C G T A G C T A G T C C G T A A G C T C T G A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

Esrrg/MA0643.1/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AGAKCTTCATAG
ATGACCTTGA---
A C G T C G T A A C T G C G T A A C T G G T A C A C G T A G C T A G T C C G T A A G C T C T G A A C T G
C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A A C G T A C G T A C G T

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:AGAKCTTCATAG--
----TTTTATGGCB
C G T A A C T G C G T A A C T G G T A C A C G T A G C T A G T C C G T A A G C T C T G A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C G A T G C A T G A C T G C T A A G C T C A T G C T A G A T G C A G T C

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:AGAKCTTCATAG---
---NTTTCATTRCHD
C G T A A C T G C G T A A C T G G T A C A C G T A G C T A G T C C G T A A G C T C T G A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T C G A T G C A T A C G T C G A T A G T C C G T A A C G T A C G T C T A G A G T C G A C T C A G T

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:AGAKCTTCATAG-
---NTTTTATDRG
C G T A A C T G C G T A A C T G G T A C A C G T A G C T A G T C C G T A A G C T C T G A A C T G A C G T
A C G T A C G T A C G T C T A G G C A T A C G T G C A T G A C T C G T A G A C T C A T G C T A G A T C G

PB0005.1_Bbx_1/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:AGAKCTTCATAG-----
--NANTTCATTGAATTA
C G T A A C T G C G T A A C T G G T A C A C G T A G C T A G T C C G T A A G C T C T G A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A T C C G T A T A G C C G A T C G A T T G A C G C T A G C A T C G A T A C T G C G T A G C T A G A C T C G A T C G T A