Information for 6-ACCAATAGGC (Motif 11)

C G T A A G T C A G T C C G T A C G T A A C G T C G T A A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C A C G T C G T A A C G T A C G T A C T G A C T G A C G T
p-value:1e-3
log p-value:-8.796e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif8.33%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets192.0 +/- 0.0bp
Average Position of motif in Background89.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-ACCAATAGGC
AGCCAATCGG-
A C G T C G T A A G T C A G T C C G T A C G T A A C G T C G T A A C T G A C T G A G T C
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T

SOX9/MA0077.1/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-ACCAATAGGC
GAACAATGG--
A C G T C G T A A G T C A G T C C G T A C G T A A C G T C G T A A C T G A C T G A G T C
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T

Isl1/MA1608.1/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-ACCAATAGGC
ATCCATTAGCA
A C G T C G T A A G T C A G T C C G T A C G T A A C G T C G T A A C T G A C T G A G T C
C T G A A C G T G A T C G T A C C T G A G C A T G A C T G C T A C T A G A G T C T G C A

PB0065.1_Sox15_1/Jaspar

Match Rank:4
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----ACCAATAGGC--
TAGTGAACAATAGATTT
A C G T A C G T A C G T A C G T A C G T C G T A A G T C A G T C C G T A C G T A A C G T C G T A A C T G A C T G A G T C A C G T A C G T
G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T

PB0183.1_Sry_2/Jaspar

Match Rank:5
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------ACCAATAGGC-
TCACGGAACAATAGGTG
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A G T C C G T A C G T A A C G T C G T A A C T G A C T G A G T C A C G T
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

NFYA/MA0060.3/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-ACCAATAGGC
AACCAATCAGA
A C G T C G T A A G T C A G T C C G T A C G T A A C G T C G T A A C T G A C T G A G T C
T C G A C T G A A G T C G A T C G C T A T C G A G A C T T A G C T C G A T A C G T G C A

SOX8/MA0868.2/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--ACCAATAGGC
AGAACAATGG--
A C G T A C G T C G T A A G T C A G T C C G T A C G T A A C G T C G T A A C T G A C T G A G T C
T G C A C T A G C T G A C G T A A G T C C G T A G T C A G C A T C T A G T A C G A C G T A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:8
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------ACCAATAGGC-
NNNNNGAACAATTGANN
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A G T C C G T A C G T A A C G T C G T A A C T G A C T G A G T C A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

PH0089.1_Isx/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---ACCAATAGGC---
ACNNCTAATTAGNNNN
A C G T A C G T A C G T C G T A A G T C A G T C C G T A C G T A A C G T C G T A A C T G A C T G A G T C A C G T A C G T A C G T
G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-ACCAATAGGC
GAACAATGGN-
A C G T C G T A A G T C A G T C C G T A C G T A A C G T C G T A A C T G A C T G A G T C
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T