Information for 15-SGCATTTA (Motif 36)

A T G C A T C G A G T C C G T A C G A T A C G T C G A T C G T A
Reverse Opposite:
A C G T C G T A C G T A C G T A A C G T A C T G A T G C A T C G
p-value:1e-3
log p-value:-7.307e+00
Information Content per bp:1.861
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif3.12%
Number of Background Sequences with motif790.3
Percentage of Background Sequences with motif1.66%
Average Position of motif in Targets107.0 +/- 45.8bp
Average Position of motif in Background97.6 +/- 58.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ISL2/MA0914.1/Jaspar

Match Rank:1
Score:0.81
Offset:1
Orientation:forward strand
Alignment:SGCATTTA-
-GCACTTAA
A T G C A T C G A G T C C G T A C G A T A C G T C G A T C G T A A C G T
A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A

BARHL1/MA0877.2/Jaspar

Match Rank:2
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:SGCATTTA-
-NCGTTTAN
A T G C A T C G A G T C C G T A C G A T A C G T C G A T C G T A A C G T
A C G T G T A C G A T C C T A G G C A T A C G T G C A T C G T A A T C G

BARHL2/MA0635.1/Jaspar

Match Rank:3
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:SGCATTTA--
ANCGTTTANN
A T G C A T C G A G T C C G T A C G A T A C G T C G A T C G T A A C G T A C G T
C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C

DLX5/MA1476.1/Jaspar

Match Rank:4
Score:0.76
Offset:1
Orientation:forward strand
Alignment:SGCATTTA-
-GCAATTAC
A T G C A T C G A G T C C G T A C G A T A C G T C G A T C G T A A C G T
A C G T T A C G G A T C T G C A C G T A A C G T A C G T C G T A A G T C

Msx3/MA0709.1/Jaspar

Match Rank:5
Score:0.75
Offset:1
Orientation:forward strand
Alignment:SGCATTTA-
-CCAATTAA
A T G C A T C G A G T C C G T A C G A T A C G T C G A T C G T A A C G T
A C G T T A G C G A T C T C G A T G C A A C G T G A C T C G T A T C G A

MSX2/MA0708.1/Jaspar

Match Rank:6
Score:0.75
Offset:1
Orientation:forward strand
Alignment:SGCATTTA-
-CCAATTAA
A T G C A T C G A G T C C G T A C G A T A C G T C G A T C G T A A C G T
A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:7
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:SGCATTTA-
-BCMATTAG
A T G C A T C G A G T C C G T A C G A T A C G T C G A T C G T A A C G T
A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G

Nobox/MA0125.1/Jaspar

Match Rank:8
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:SGCATTTA
ACCAATTA
A T G C A T C G A G T C C G T A C G A T A C G T C G A T C G T A
T C G A A T G C G A T C G T C A G T C A A C G T C G A T C T G A

MSX1/MA0666.1/Jaspar

Match Rank:9
Score:0.73
Offset:1
Orientation:forward strand
Alignment:SGCATTTA-
-CCAATTAG
A T G C A T C G A G T C C G T A C G A T A C G T C G A T C G T A A C G T
A C G T A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G

LHX2/MA0700.2/Jaspar

Match Rank:10
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-SGCATTTA--
AACCAATTAAT
A C G T A T G C A T C G A G T C C G T A C G A T A C G T C G A T C G T A A C G T A C G T
C G T A C G T A A T G C G A T C G C T A G C T A C G A T C G A T G C T A C G T A G C A T