| p-value: | 1e-10 |
| log p-value: | -2.450e+01 |
| Information Content per bp: | 1.936 |
| Number of Target Sequences with motif | 3.0 |
| Percentage of Target Sequences with motif | 20.00% |
| Number of Background Sequences with motif | 2.9 |
| Percentage of Background Sequences with motif | 0.01% |
| Average Position of motif in Targets | 46.3 +/- 42.9bp |
| Average Position of motif in Background | 139.6 +/- 45.9bp |
| Strand Bias (log2 ratio + to - strand density) | 1.0 |
| Multiplicity (# of sites on avg that occur together) | 1.00 |
| Motif File: | file (matrix) reverse opposite |
| SVG Files for Logos: | forward logo reverse opposite |
PB0135.1_Hoxa3_2/Jaspar
| Match Rank: | 1 |
| Score: | 0.67 |
| Offset: | -2 |
| Orientation: | forward strand |
| Alignment: | --AAGCCATCAGGG AAAAACCATTAAGG |
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HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer
| Match Rank: | 2 |
| Score: | 0.67 |
| Offset: | -1 |
| Orientation: | reverse strand |
| Alignment: | -AAGCCATCAGGG YCATCMATCA--- |
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HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer
| Match Rank: | 3 |
| Score: | 0.66 |
| Offset: | -2 |
| Orientation: | forward strand |
| Alignment: | --AAGCCATCAGGG GYCATCMATCAT-- |
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Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer
| Match Rank: | 4 |
| Score: | 0.65 |
| Offset: | 1 |
| Orientation: | forward strand |
| Alignment: | AAGCCATCAGGG -GGCCATTAAC- |
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Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer
| Match Rank: | 5 |
| Score: | 0.63 |
| Offset: | 0 |
| Orientation: | forward strand |
| Alignment: | AAGCCATCAGGG AAACMATTAN-- |
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Isl1/MA1608.1/Jaspar
| Match Rank: | 6 |
| Score: | 0.61 |
| Offset: | 1 |
| Orientation: | forward strand |
| Alignment: | AAGCCATCAGGG -ATCCATTAGCA |
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TFAP2B(var.3)/MA0813.1/Jaspar
| Match Rank: | 7 |
| Score: | 0.60 |
| Offset: | 1 |
| Orientation: | reverse strand |
| Alignment: | AAGCCATCAGGG-- -TGCCCTNAGGGCA |
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Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer
| Match Rank: | 8 |
| Score: | 0.59 |
| Offset: | 1 |
| Orientation: | forward strand |
| Alignment: | AAGCCATCAGGG -RGCAATNAAA- |
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Zic1::Zic2/MA1628.1/Jaspar
| Match Rank: | 9 |
| Score: | 0.58 |
| Offset: | 2 |
| Orientation: | forward strand |
| Alignment: | AAGCCATCAGGG- --CACAGCAGGGG |
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TFAP2A(var.3)/MA0872.1/Jaspar
| Match Rank: | 10 |
| Score: | 0.58 |
| Offset: | 1 |
| Orientation: | forward strand |
| Alignment: | AAGCCATCAGGG-- -TGCCCTGAGGGCA |
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