Information for 4-AGAATATGCG (Motif 11)

C G T A A C T G C G T A C G T A A C G T C G T A A C G T A C T G A G T C A C T G
Reverse Opposite:
A G T C A C T G A G T C C G T A A C G T C G T A A C G T A C G T A G T C A C G T
p-value:1e-3
log p-value:-8.543e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif8.33%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets10.0 +/- 0.0bp
Average Position of motif in Background68.2 +/- 14.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGAATATGCG
ATGMATATDC-
A C G T C G T A A C T G C G T A C G T A A C G T C G T A A C G T A C T G A G T C A C T G
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGAATATGCG-
-GAATATTCAT
C G T A A C T G C G T A C G T A A C G T C G T A A C G T A C T G A G T C A C T G A C G T
A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AGAATATGCG
AAGGATATNTN
A C G T C G T A A C T G C G T A C G T A A C G T C G T A A C G T A C T G A G T C A C T G
T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

BHLHE22/MA0818.1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGAATATGCG
ACCATATGTT
C G T A A C T G C G T A C G T A A C G T C G T A A C G T A C T G A G T C A C T G
T C G A T G A C G T A C C T G A A G C T G T C A G A C T A C T G A G C T G A C T

OLIG3/MA0827.1/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGAATATGCG
ACCATATGTT
C G T A A C T G C G T A C G T A A C G T C G T A A C G T A C T G A G T C A C T G
T C G A T G A C G T A C C T G A A C G T T G C A G A C T A C T G A C G T G A C T

BHLHE23/MA0817.1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGAATATGCG-
AAACATATGTTT
A C G T C G T A A C T G C G T A C G T A A C G T C G T A A C G T A C T G A G T C A C T G A C G T
C G T A T C G A T G C A G T A C C T G A A G C T T G C A G A C T A C T G A C G T G A C T C G A T

Atoh1/MA0461.2/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGAATATGCG
AACATATGTT
C G T A A C T G C G T A C G T A A C G T C G T A A C G T A C T G A G T C A C T G
T C G A T G C A T G A C T C G A C A G T G T C A C G A T C A T G A C G T G A C T

PB0183.1_Sry_2/Jaspar

Match Rank:8
Score:0.57
Offset:-7
Orientation:forward strand
Alignment:-------AGAATATGCG
TCACGGAACAATAGGTG
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A C G T A A C G T C G T A A C G T A C T G A G T C A C T G
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

OLIG1/MA0826.1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGAATATGCG
AACATATGTT
C G T A A C T G C G T A C G T A A C G T C G T A A C G T A C T G A G T C A C T G
T C G A T G C A G T A C C T G A A C G T T G C A G C A T A C T G A C G T G A C T

OLIG2/MA0678.1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGAATATGCG
ACCATATGGT
C G T A A C T G C G T A C G T A A C G T C G T A A C G T A C T G A G T C A C T G
C T G A T G A C T G A C C T G A A C G T T G C A G A C T C A T G A C T G G A C T