Information for 1-TTTTTATT (Motif 38)

A C G T A C G T A G C T C G A T A C G T C G T A A G C T A C G T
Reverse Opposite:
C G T A C T G A A C G T C G T A C G T A C T G A C G T A C G T A
p-value:1e-3
log p-value:-7.158e+00
Information Content per bp:1.905
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif55.56%
Number of Background Sequences with motif8455.9
Percentage of Background Sequences with motif9.71%
Average Position of motif in Targets103.4 +/- 41.2bp
Average Position of motif in Background100.2 +/- 73.6bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13/MA0901.2/Jaspar

Match Rank:1
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--TTTTTATT----
NNATTTTATTGGNN
A C G T A C G T A C G T A C G T A G C T C G A T A C G T C G T A A G C T A C G T A C G T A C G T A C G T A C G T
C G T A C G T A C G T A C G A T C G A T C G A T G C A T T G C A G C A T C G A T C T A G C A T G G C A T G C A T

PH0078.1_Hoxd13/Jaspar

Match Rank:2
Score:0.83
Offset:-3
Orientation:reverse strand
Alignment:---TTTTTATT-----
NNANTTTTATTGGNNN
A C G T A C G T A C G T A C G T A C G T A G C T C G A T A C G T C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

PH0057.1_Hoxb13/Jaspar

Match Rank:3
Score:0.83
Offset:-3
Orientation:reverse strand
Alignment:---TTTTTATT-----
NNAATTTTATTGGNTN
A C G T A C G T A C G T A C G T A C G T A G C T C G A T A C G T C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:4
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:TTTTTATT---
NTTTTATTACN
A C G T A C G T A G C T C G A T A C G T C G T A A G C T A C G T A C G T A C G T A C G T
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

PH0075.1_Hoxd10/Jaspar

Match Rank:5
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----TTTTTATT-----
NTNAATTTTATTGNATT
A C G T A C G T A C G T A C G T A C G T A C G T A G C T C G A T A C G T C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

CDX2/MA0465.2/Jaspar

Match Rank:6
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:TTTTTATT----
NTTTTATTGCNN
A C G T A C G T A G C T C G A T A C G T C G T A A G C T A C G T A C G T A C G T A C G T A C G T
C G A T G C A T C G A T G C A T G C A T T C G A G A C T C A G T C T A G G A T C G C A T G A C T

HOXD9/MA0913.2/Jaspar

Match Rank:7
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:TTTTTATT--
NTTTTATTGC
A C G T A C G T A G C T C G A T A C G T C G T A A G C T A C G T A C G T A C G T
C T A G C A G T A C G T C G A T C G A T C G T A A G C T C A G T T C A G A G T C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:8
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:TTTTTATT--
NTTTTATGAC
A C G T A C G T A G C T C G A T A C G T C G T A A G C T A C G T A C G T A C G T
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:TTTTTATT---
-TTTTATTRGN
A C G T A C G T A G C T C G A T A C G T C G T A A G C T A C G T A C G T A C G T A C G T
A C G T C G A T A C G T A C G T G C A T C G T A G A C T C A G T C T A G A T C G G A T C

PB0119.1_Foxa2_2/Jaspar

Match Rank:10
Score:0.76
Offset:-4
Orientation:reverse strand
Alignment:----TTTTTATT---
NCNTTTGTTATTTNN
A C G T A C G T A C G T A C G T A C G T A C G T A G C T C G A T A C G T C G T A A G C T A C G T A C G T A C G T A C G T
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T