Information for 6-ATTATCATTATA (Motif 12)

C G T A A C G T A C G T C G T A A C G T A G T C C G T A A C G T A C G T C G T A A C G T C G T A
Reverse Opposite:
A C G T C G T A A C G T C G T A C G T A A C G T A C T G C G T A A C G T C G T A C G T A A C G T
p-value:1e-9
log p-value:-2.116e+01
Information Content per bp:1.530
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.18%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets105.9 +/- 25.2bp
Average Position of motif in Background76.3 +/- 59.5bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0069.1_Sox21_1/Jaspar

Match Rank:1
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----ATTATCATTATA
NNTAATTATAATNANN
A C G T A C G T A C G T A C G T C G T A A C G T A C G T C G T A A C G T A G T C C G T A A C G T A C G T C G T A A C G T C G T A
G T A C G C A T G C A T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C G T A

PB0064.1_Sox14_1/Jaspar

Match Rank:2
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----ATTATCATTATA
NNTAATTATAATTNNN
A C G T A C G T A C G T A C G T C G T A A C G T A C G T C G T A A C G T A G T C C G T A A C G T A C G T C G T A A C G T C G T A
C A T G G T C A G C A T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C T A G G T A C

PB0079.1_Sry_1/Jaspar

Match Rank:3
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----ATTATCATTATA
NANTATTATAATTNNN
A C G T A C G T A C G T A C G T C G T A A C G T A C G T C G T A A C G T A G T C C G T A A C G T A C G T C G T A A C G T C G T A
A C T G G C T A G C T A G A C T C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T G T C A C G A T T G C A

PH0017.1_Cux1_2/Jaspar

Match Rank:4
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----ATTATCATTATA
TAGTGATCATCATTA--
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T C G T A A C G T A G T C C G T A A C G T A C G T C G T A A C G T C G T A
G A C T G C T A C A T G A G C T C A T G G C T A C G A T G A T C C G T A C A G T G A T C T C G A A G C T A C G T G C T A A C G T A C G T

PB0174.1_Sox30_2/Jaspar

Match Rank:5
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----ATTATCATTATA
NCGTATTATAATCNTA
A C G T A C G T A C G T A C G T C G T A A C G T A C G T C G T A A C G T A G T C C G T A A C G T A C G T C G T A A C G T C G T A
A T G C A G T C A C T G A C G T G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G A C G C A T C A G T C T G A

POU6F1(var.2)/MA1549.1/Jaspar

Match Rank:6
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:ATTATCATTATA
-NNCTCATTAT-
C G T A A C G T A C G T C G T A A C G T A G T C C G T A A C G T A C G T C G T A A C G T C G T A
A C G T G C T A A T G C T G A C C G A T T G A C G T C A A C G T A G C T C T G A G A C T A C G T

NKX6-3/MA1530.1/Jaspar

Match Rank:7
Score:0.68
Offset:3
Orientation:forward strand
Alignment:ATTATCATTATA
---CTCATTAAA
C G T A A C G T A C G T C G T A A C G T A G T C C G T A A C G T A C G T C G T A A C G T C G T A
A C G T A C G T A C G T T A G C A G C T A G T C C G T A A C G T A G C T C T G A G C T A G C T A

HOXB4/MA1499.1/Jaspar

Match Rank:8
Score:0.67
Offset:3
Orientation:forward strand
Alignment:ATTATCATTATA
---ATCATTAG-
C G T A A C G T A C G T C G T A A C G T A G T C C G T A A C G T A C G T C G T A A C G T C G T A
A C G T A C G T A C G T T C G A A G C T G T A C C T G A A C G T A C G T C T G A T C A G A C G T

HOXC4/MA1504.1/Jaspar

Match Rank:9
Score:0.66
Offset:3
Orientation:forward strand
Alignment:ATTATCATTATA
---GTCATTAA-
C G T A A C G T A C G T C G T A A C G T A G T C C G T A A C G T A C G T C G T A A C G T C G T A
A C G T A C G T A C G T T C A G G A C T G T A C C T G A A C G T A C G T C T G A T C G A A C G T

HOXD4/MA1507.1/Jaspar

Match Rank:10
Score:0.66
Offset:3
Orientation:forward strand
Alignment:ATTATCATTATA
---ATCATTAG-
C G T A A C G T A C G T C G T A A C G T A G T C C G T A A C G T A C G T C G T A A C G T C G T A
A C G T A C G T A C G T T C G A A G C T G T A C C T G A A C G T A C G T C T G A C T A G A C G T