Information for 3-CCTAATGC (Motif 31)

A G T C A G T C A C G T C G T A C G T A A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C C G T A A C G T A C G T G T C A A C T G C T A G
p-value:1e-3
log p-value:-7.552e+00
Information Content per bp:1.920
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif18.18%
Number of Background Sequences with motif232.9
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets116.7 +/- 31.4bp
Average Position of motif in Background104.5 +/- 74.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1/MA1608.1/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-CCTAATGC--
NNCTAATGGNN
A C G T A G T C A G T C A C G T C G T A C G T A A C G T A C T G A G T C A C G T A C G T
A C G T T C A G G A T C C G A T C T G A C G T A G A C T C A T G C T A G T G C A G A C T

GSC/MA0648.1/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CCTAATGC--
GCTAATCCCC
A G T C A G T C A C G T C G T A C G T A A C G T A C T G A G T C A C G T A C G T
T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C

GSC2/MA0891.1/Jaspar

Match Rank:3
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CCTAATGC--
CCTAATCCGC
A G T C A G T C A C G T C G T A C G T A A C G T A C T G A G T C A C G T A C G T
T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C

OTX2/MA0712.2/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CCTAATGC---
NNCTAATCCCNN
A C G T A G T C A G T C A C G T C G T A C G T A A C G T A C T G A G T C A C G T A C G T A C G T
G C A T G C A T G A T C G C A T C G T A G T C A C A G T G A T C G A T C G A T C G C A T C G A T

PITX1/MA0682.2/Jaspar

Match Rank:5
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CCTAATGC-
-CTAATCCC
A G T C A G T C A C G T C G T A C G T A A C G T A C T G A G T C A C G T
A C G T G A T C A C G T C G T A C G T A A C G T G T A C A G T C G T A C

PITX2/MA1547.1/Jaspar

Match Rank:6
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CCTAATGC-
-ATAATCCC
A G T C A G T C A C G T C G T A C G T A A C G T A C T G A G T C A C G T
A C G T G T C A C G A T C T G A C G T A A C G T A G T C A G T C T G A C

PITX3/MA0714.1/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CCTAATGC-
CTTAATCCC
A G T C A G T C A C G T C G T A C G T A A C G T A C T G A G T C A C G T
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:8
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CCTAATGC-
-YTAATCCY
A G T C A G T C A C G T C G T A C G T A A C G T A C T G A G T C A C G T
A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:9
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CCTAATGC
GCTAATCC
A G T C A G T C A C G T C G T A C G T A A C G T A C T G A G T C
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CCTAATGC--
--TAATCCCN
A G T C A G T C A C G T C G T A C G T A A C G T A C T G A G T C A C G T A C G T
A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G