Information for 14-GCTAGCCA (Motif 38)

A T C G A G T C A G C T G T C A A C T G A T G C A T G C C T G A
Reverse Opposite:
A G C T A T C G A T C G G T A C A C G T C T G A A C T G T A G C
p-value:1e-3
log p-value:-7.495e+00
Information Content per bp:1.798
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.64%
Number of Background Sequences with motif572.6
Percentage of Background Sequences with motif1.19%
Average Position of motif in Targets116.0 +/- 55.8bp
Average Position of motif in Background103.0 +/- 58.0bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)1.41
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4/MA1153.1/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GCTAGCCA
TCTAGACA
A T C G A G T C A G C T G T C A A C T G A T G C A T G C C T G A
A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A

SMAD5/MA1557.1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GCTAGCCA
TGTCTAGACA
A C G T A C G T A T C G A G T C A G C T G T C A A C T G A T G C A T G C C T G A
G A C T T C A G C A G T T G A C A C G T T G C A T A C G G T C A G A T C G C T A

SMAD3/MA0795.1/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GCTAGCCA
CGTCTAGACA
A C G T A C G T A T C G A G T C A G C T G T C A A C T G A T G C A T G C C T G A
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A

NFIC/MA0161.2/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCTAGCCA--
TACTTGGCAGA
A C G T A T C G A G T C A G C T G T C A A C T G A T G C A T G C C T G A A C G T A C G T
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GCTAGCCA-
-BCAGACWA
A T C G A G T C A G C T G T C A A C T G A T G C A T G C C T G A A C G T
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCTAGCCA-
-CTTGGCAA
A T C G A G T C A G C T G T C A A C T G A T G C A T G C C T G A A C G T
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCTAGCCA
NGCTN----
A C G T A T C G A G T C A G C T G T C A A C T G A T G C A T G C C T G A
T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCTAGCCA
WDNCTGGGCA
A C G T A C G T A T C G A G T C A G C T G T C A A C T G A T G C A T G C C T G A
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GCTAGCCA-----
CAAATCCAGACATCACA
A C G T A C G T A C G T A C G T A T C G A G T C A G C T G T C A A C T G A T G C A T G C C T G A A C G T A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCTAGCCA--
-CGTGCCAAG
A T C G A G T C A G C T G T C A A C T G A T G C A T G C C T G A A C G T A C G T
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G