Information for 8-GMAGAGCCATGC (Motif 10)

A C T G G T A C C T G A T A C G C T G A A C T G A G T C G T A C C G T A A C G T A C T G G T A C
Reverse Opposite:
A C T G T G A C C G T A C G A T A C T G T A C G G T A C A G C T A T G C A G C T A C T G A G T C
p-value:1e-3
log p-value:-9.110e+00
Information Content per bp:1.634
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif40.00%
Number of Background Sequences with motif2297.4
Percentage of Background Sequences with motif2.79%
Average Position of motif in Targets108.6 +/- 60.0bp
Average Position of motif in Background100.8 +/- 83.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.70
Offset:4
Orientation:forward strand
Alignment:GMAGAGCCATGC--
----GGCCATTAAC
A C T G G T A C C T G A T A C G C T G A A C T G A G T C G T A C C G T A A C G T A C T G G T A C A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

YY2/MA0748.2/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GMAGAGCCATGC
-CGCCGCCATNN
A C T G G T A C C T G A T A C G C T G A A C T G A G T C G T A C C G T A A C G T A C T G G T A C
A C G T A T G C C A T G A T G C T A G C C T A G A G T C A T G C T C G A A G C T A T G C C A G T

ZFP42/MA1651.1/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GMAGAGCCATGC------
NNNNGGCAGCCATTTTGNNNN
A C G T A C G T A C G T A C T G G T A C C T G A T A C G C T G A A C T G A G T C G T A C C G T A A C G T A C T G G T A C A C G T A C G T A C G T A C G T A C G T A C G T
A G T C T A C G T A C G C T G A T C A G C T A G T A G C T G C A C A T G T G A C A G T C T C G A G A C T A G C T G C A T G A C T C A T G C A T G C G T A C G T A T A G C

HOXD8/MA0910.2/Jaspar

Match Rank:4
Score:0.61
Offset:5
Orientation:forward strand
Alignment:GMAGAGCCATGC-
-----GCAATTAC
A C T G G T A C C T G A T A C G C T G A A C T G A G T C G T A C C G T A A C G T A C T G G T A C A C G T
A C G T A C G T A C G T A C G T A C G T T C A G A G T C T G C A C G T A A C G T C A G T C G T A T G A C

HOXB8/MA1502.1/Jaspar

Match Rank:5
Score:0.61
Offset:5
Orientation:forward strand
Alignment:GMAGAGCCATGC-
-----GCAATTAC
A C T G G T A C C T G A T A C G C T G A A C T G A G T C G T A C C G T A A C G T A C T G G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C T G A G T C T G C A C G T A A C G T C A G T C G T A T G A C

Isl1/MA1608.1/Jaspar

Match Rank:6
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GMAGAGCCATGC---
----ATCCATTAGCA
A C T G G T A C C T G A T A C G C T G A A C T G A G T C G T A C C G T A A C G T A C T G G T A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A A C G T G A T C G T A C C T G A G C A T G A C T G C T A C T A G A G T C T G C A

HOXA7/MA1498.1/Jaspar

Match Rank:7
Score:0.60
Offset:5
Orientation:forward strand
Alignment:GMAGAGCCATGC-
-----GCAATTAC
A C T G G T A C C T G A T A C G C T G A A C T G A G T C G T A C C G T A A C G T A C T G G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A T C G A G T C T G C A G C T A A C G T C A G T C G T A T A G C

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GMAGAGCCATGC--
----RGCAATNAAA
A C T G G T A C C T G A T A C G C T G A A C T G A G T C G T A C C G T A A C G T A C T G G T A C A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A

NFE2/MA0841.1/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GMAGAGCCATGC
GATGAGTCATN-
A C T G G T A C C T G A T A C G C T G A A C T G A G T C G T A C C G T A A C G T A C T G G T A C
T A C G T C G A A C G T C T A G T C G A A T C G C A G T G T A C C T G A A G C T A C T G A C G T

YY1/MA0095.2/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GMAGAGCCATGC--
--GCNGCCATCTTG
A C T G G T A C C T G A T A C G C T G A A C T G A G T C G T A C C G T A A C G T A C T G G T A C A C G T A C G T
A C G T A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G