Information for 13-CCCCTAATTA (Motif 34)

A G T C A G T C A G T C A G T C A C G T C G T A C G T A A C G T A C G T C G T A
Reverse Opposite:
A C G T C G T A C G T A A C G T A C G T C G T A A C T G A C T G A C T G A C T G
p-value:1e-3
log p-value:-7.167e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif8.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets71.0 +/- 0.0bp
Average Position of motif in Background74.8 +/- 55.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0039.1_Mnx1/Jaspar

Match Rank:1
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--CCCCTAATTA----
NNNCACTAATTANTNN
A C G T A C G T A G T C A G T C A G T C A G T C A C G T C G T A C G T A A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A T G C C T A G A T G C G A T C T G C A A T G C G A C T G T C A C G T A G A C T A C G T C T G A T A C G A C G T T G C A T G A C

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:2
Score:0.82
Offset:2
Orientation:reverse strand
Alignment:CCCCTAATTA
--NCTAATTA
A G T C A G T C A G T C A G T C A C G T C G T A C G T A A C G T A C G T C G T A
A C G T A C G T T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A

VSX2/MA0726.1/Jaspar

Match Rank:3
Score:0.82
Offset:3
Orientation:forward strand
Alignment:CCCCTAATTA-
---CTAATTAG
A G T C A G T C A G T C A G T C A C G T C G T A C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G

LHX9/MA0701.2/Jaspar

Match Rank:4
Score:0.81
Offset:3
Orientation:forward strand
Alignment:CCCCTAATTA-
---CTAATTAA
A G T C A G T C A G T C A G T C A C G T C G T A C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A G T C A G C T G T C A C G T A A C G T A C G T C T G A T C G A

PRRX2/MA0075.3/Jaspar

Match Rank:5
Score:0.80
Offset:3
Orientation:forward strand
Alignment:CCCCTAATTA-
---CTAATTAA
A G T C A G T C A G T C A G T C A C G T C G T A C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A G T C A G C T T G C A C G T A A C G T A C G T T C G A C T G A

VSX1/MA0725.1/Jaspar

Match Rank:6
Score:0.80
Offset:3
Orientation:forward strand
Alignment:CCCCTAATTA-
---CTAATTAT
A G T C A G T C A G T C A G T C A C G T C G T A C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T G A T C G A C T G T C A T C G A G A C T C A G T C T G A A C G T

HOXD3/MA0912.2/Jaspar

Match Rank:7
Score:0.80
Offset:3
Orientation:forward strand
Alignment:CCCCTAATTA-
---CTAATTAC
A G T C A G T C A G T C A G T C A C G T C G T A C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A G T C A G C T G T C A C G T A A C G T A C G T C T G A A T G C

LBX1/MA0618.1/Jaspar

Match Rank:8
Score:0.80
Offset:3
Orientation:reverse strand
Alignment:CCCCTAATTA-
---CTAATTAA
A G T C A G T C A G T C A G T C A C G T C G T A C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A

EMX2/MA0886.1/Jaspar

Match Rank:9
Score:0.80
Offset:2
Orientation:reverse strand
Alignment:CCCCTAATTA--
--NCTAATTANN
A G T C A G T C A G T C A G T C A C G T C G T A C G T A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T T A C G A G T C A C G T G T C A C G T A A C G T C A G T C T G A T A C G A G T C

EMX1/MA0612.2/Jaspar

Match Rank:10
Score:0.79
Offset:3
Orientation:reverse strand
Alignment:CCCCTAATTA-
---CTAATTAN
A G T C A G T C A G T C A G T C A C G T C G T A C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A T G C A C G T G T C A C G T A A C G T A C G T C T G A T A C G