Information for 1-CGCATTATAG (Motif 1)

A G T C A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A A C G T C G T A C G T A A C G T A C T G A G T C A C T G
p-value:1e-4
log p-value:-1.036e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets89.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU6F1(var.2)/MA1549.1/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CGCATTATAG
NNCTCATTAT--
A C G T A C G T A G T C A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A A C T G
G C T A A T G C T G A C C G A T T G A C G T C A A C G T A G C T C T G A G A C T A C G T A C G T

NKX6-3/MA1530.1/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CGCATTATAG
CTCATTAAA-
A G T C A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A A C T G
T A G C A G C T A G T C C G T A A C G T A G C T C T G A G C T A G C T A A C G T

PH0126.1_Obox6/Jaspar

Match Rank:3
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CGCATTATAG
AAAAACGGATTATTG
A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A A C T G
G T C A G C T A C T G A G C T A C T A G T A G C C T A G A C T G G T C A A C G T G A C T C G T A C G A T G A C T A T C G

PH0152.1_Pou6f1_2/Jaspar

Match Rank:4
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----CGCATTATAG--
GCAACCTCATTATNNNN
A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A A C T G A C G T A C G T
C A T G G T A C G T C A C G T A A T G C G T A C A C G T G T A C C G T A A C G T C G A T C G T A C G A T A T C G C G A T C A G T A G C T

POU6F2/MA0793.1/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CGCATTATAG
AGCTCATTAT--
A C G T A C G T A G T C A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A A C T G
C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T A C G T A C G T

PB0174.1_Sox30_2/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CGCATTATAG-----
NCGTATTATAATCNTA
A C G T A G T C A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A T G C A G T C A C T G A C G T G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G A C G C A T C A G T C T G A

PH0151.1_Pou6f1_1/Jaspar

Match Rank:7
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----CGCATTATAG--
NNNACCTCATTATCNTN
A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A A C T G A C G T A C G T
C A T G G A T C G T C A C G T A T A C G G T A C A C G T G T A C C G T A C G A T C G A T C G T A C G A T A T G C A C T G C G A T A G T C

OTX1/MA0711.1/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CGCATTATAG
CGGATTAN--
A G T C A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A A C T G
T A G C T A C G A T C G G T C A A C G T G C A T C G T A C T G A A C G T A C G T

PB0079.1_Sry_1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CGCATTATAG-----
TATAATTATAATATTC
A C G T A G T C A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T G C T A C A G T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C T G A C G A T C A G T T G A C

PITX2/MA1547.1/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CGCATTATAG
GGGATTAN--
A G T C A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A A C T G
A C T G T C A G C T A G G T C A A C G T A G C T C G T A C A G T A C G T A C G T