Information for 1-CGCAATCA (Motif 36)

A G T C A C T G A G T C C G T A C G T A A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A C G T A C G T A C T G A G T C A C T G
p-value:1e-2
log p-value:-6.017e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif69.9
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets139.0 +/- 0.0bp
Average Position of motif in Background102.6 +/- 117.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Dux/MA0611.1/Jaspar

Match Rank:1
Score:0.85
Offset:1
Orientation:forward strand
Alignment:CGCAATCA-
-CCAATCAA
A G T C A C T G A G T C C G T A C G T A A C G T A G T C C G T A A C G T
A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

PH0037.1_Hdx/Jaspar

Match Rank:2
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----CGCAATCA-----
AAGGCGAAATCATCGCA
A C G T A C G T A C G T A C G T A G T C A C T G A G T C C G T A C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

PH0026.1_Duxbl/Jaspar

Match Rank:3
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---CGCAATCA------
CGACCCAATCAACGGTG
A C G T A C G T A C G T A G T C A C T G A G T C C G T A C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

LHX1/MA1518.1/Jaspar

Match Rank:4
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CGCAATCA-
-GCAATTAC
A G T C A C T G A G T C C G T A C G T A A C G T A G T C C G T A A C G T
A C G T A T C G G A T C T G C A G C T A A C G T A G C T C G T A T A G C

NFYC/MA1644.1/Jaspar

Match Rank:5
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CGCAATCA--
AGCCAATCAGA
A C G T A G T C A C T G A G T C C G T A C G T A A C G T A G T C C G T A A C G T A C G T
T C G A C T A G A G T C G T A C G C T A T C G A G A C T T A G C T C G A T A C G T G C A

EN2/MA0642.1/Jaspar

Match Rank:6
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CGCAATCA--
CCCAATTAGC
A G T C A C T G A G T C C G T A C G T A A C G T A G T C C G T A A C G T A C G T
T A G C A T G C A G T C T G C A T G C A A C G T A G C T C T G A T A C G A T G C

NFYA/MA0060.3/Jaspar

Match Rank:7
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CGCAATCA--
AACCAATCAGA
A C G T A G T C A C T G A G T C C G T A C G T A A C G T A G T C C G T A A C G T A C G T
T C G A C T G A A G T C G A T C G C T A T C G A G A C T T A G C T C G A T A C G T G C A

CEBPG/MA0838.1/Jaspar

Match Rank:8
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CGCAATCA
ATTGCGCAAT--
A C G T A C G T A C G T A C G T A G T C A C T G A G T C C G T A C G T A A C G T A G T C C G T A
T C G A C A G T C A G T C T A G G A T C C T A G G A T C C T G A C G T A A G C T A C G T A C G T

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CGCAATCA--
RGCAATNAAA
A G T C A C T G A G T C C G T A C G T A A C G T A G T C C G T A A C G T A C G T
C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A

CEBPB/MA0466.2/Jaspar

Match Rank:10
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CGCAATCA
ATTGCGCAAT--
A C G T A C G T A C G T A C G T A G T C A C T G A G T C C G T A C G T A A C G T A G T C C G T A
T C G A G A C T C A G T C T A G G A T C T C A G G T A C T G C A G C T A A G C T A C G T A C G T