Information for 21-CCAATAAGTA (Motif 38)

A G T C A G T C C G T A C G T A A C G T C G T A C G T A A C T G A C G T C G T A
Reverse Opposite:
A C G T C G T A A G T C A C G T A C G T C G T A A C G T A C G T A C T G A C T G
p-value:1e-3
log p-value:-7.019e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif9.09%
Number of Background Sequences with motif7.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets194.0 +/- 0.0bp
Average Position of motif in Background120.9 +/- 56.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--CCAATAAGTA
AGCCAATCGG--
A C G T A C G T A G T C A G T C C G T A C G T A A C G T C G T A C G T A A C T G A C G T C G T A
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T

NFYC/MA1644.1/Jaspar

Match Rank:2
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--CCAATAAGTA
AGCCAATCAGA-
A C G T A C G T A G T C A G T C C G T A C G T A A C G T C G T A C G T A A C T G A C G T C G T A
T C G A C T A G A G T C G T A C G C T A T C G A G A C T T A G C T C G A T A C G T G C A A C G T

NFYA/MA0060.3/Jaspar

Match Rank:3
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--CCAATAAGTA
AACCAATCAGA-
A C G T A C G T A G T C A G T C C G T A C G T A A C G T C G T A C G T A A C T G A C G T C G T A
T C G A C T G A A G T C G A T C G C T A T C G A G A C T T A G C T C G A T A C G T G C A A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CCAATAAGTA
ACTAGCCAATCA---
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T C G T A C G T A A C T G A C G T C G T A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T

PH0089.1_Isx/Jaspar

Match Rank:5
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----CCAATAAGTA--
ACNNCTAATTAGNNNN
A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T C G T A C G T A A C T G A C G T C G T A A C G T A C G T
G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T

LHX2/MA0700.2/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCAATAAGTA
AACCAATTAAT-
A C G T A C G T A G T C A G T C C G T A C G T A A C G T C G T A C G T A A C T G A C G T C G T A
C G T A C G T A A T G C G A T C G C T A G C T A C G A T C G A T G C T A C G T A G C A T A C G T

MF0010.1_Homeobox_class/Jaspar

Match Rank:7
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CCAATAAGTA
--AATAATT-
A G T C A G T C C G T A C G T A A C G T C G T A C G T A A C T G A C G T C G T A
A C G T A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T A C G T

PH0055.1_Hoxa7_2/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CCAATAAGTA----
TNCCATTAATTACTNC
A C G T A C G T A G T C A G T C C G T A C G T A A C G T C G T A C G T A A C T G A C G T C G T A A C G T A C G T A C G T A C G T
A C G T C A G T A T G C A G T C T G C A A C G T G C A T G T C A C G T A A C G T C A G T C G T A T G A C A C G T T G C A T G A C

HOXA13/MA0650.2/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCAATAAGTA
CCCAATAAAAC
A C G T A G T C A G T C C G T A C G T A A C G T C G T A C G T A A C T G A C G T C G T A
T G A C T A G C A G T C G T C A C G T A A C G T C T G A C T G A C G T A G T C A G T A C

HOXB13/MA0901.2/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCAATAAGTA--
AACCAATAAAATTT
A C G T A C G T A G T C A G T C C G T A C G T A A C G T C G T A C G T A A C T G A C G T C G T A A C G T A C G T
C G T A C G T A G T A C G A T C G C T A C G T A A C G T C G T A G C T A G C T A G C T A G C A T G C A T G C A T