Information for 3-CGAGGGATCA (Motif 7)

A G T C A C T G C G T A A C T G A C T G A C T G C G T A A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A C G T A G T C A G T C A G T C A C G T A G T C A C T G
p-value:1e-12
log p-value:-2.865e+01
Information Content per bp:1.530
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.49%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets78.0 +/- 27.9bp
Average Position of motif in Background124.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RHOXF1/MA0719.1/Jaspar

Match Rank:1
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:CGAGGGATCA-
---NGGATTAN
A G T C A C T G C G T A A C T G A C T G A C T G C G T A A C G T A G T C C G T A A C G T
A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T

PB0118.1_Esrra_2/Jaspar

Match Rank:2
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CGAGGGATCA-----
GGCGAGGGGTCAAGGGC
A C G T A C G T A G T C A C T G C G T A A C T G A C T G A C T G C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

PB0057.1_Rxra_1/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CGAGGGATCA-----
NTNNNGGGGTCANGNNN
A C G T A C G T A G T C A C T G C G T A A C T G A C T G A C T G C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

PB0030.1_Hnf4a_1/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CGAGGGATCA-----
CTCCAGGGGTCAATTGA
A C G T A C G T A G T C A C T G C G T A A C T G A C T G A C T G C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

PH0137.1_Pitx1/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CGAGGGATCA-----
TTAGAGGGATTAACAAT
A C G T A C G T A G T C A C T G C G T A A C T G A C T G A C T G C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

PH0123.1_Obox3/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CGAGGGATCA-----
TGAGGGGGATTAACTAT
A C G T A C G T A G T C A C T G C G T A A C T G A C T G A C T G C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
G C A T A T C G T C G A T A C G C T A G C T A G C T A G C A T G G C T A A C G T G A C T C G T A C G T A G T A C C G A T G T C A G A C T

PITX2/MA1547.1/Jaspar

Match Rank:7
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CGAGGGATCA-
---GGGATTAN
A G T C A C T G C G T A A C T G A C T G A C T G C G T A A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A C T G T C A G C T A G G T C A A C G T A G C T C G T A C A G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CGAGGGATCA
--AGRGGTCA
A G T C A C T G C G T A A C T G A C T G A C T G C G T A A C G T A G T C C G T A
A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A

OTX2/MA0712.2/Jaspar

Match Rank:9
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CGAGGGATCA---
-AAGGGATTAGAA
A G T C A C T G C G T A A C T G A C T G A C T G C G T A A C G T A G T C C G T A A C G T A C G T A C G T
A C G T G C T A C G T A C T A G C T A G C T A G G T C A C A G T G C A T C G T A C T A G C G T A C G T A

PITX3/MA0714.1/Jaspar

Match Rank:10
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CGAGGGATCA--
---GGGATTANN
A G T C A C T G C G T A A C T G A C T G A C T G C G T A A C G T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G