Information for 10-GAAATATTCAGT (Motif 13)

A C T G C G T A C G T A C G T A A C G T C G T A A C G T A C G T A G T C C G T A A C T G A C G T
Reverse Opposite:
C G T A A G T C A C G T A C T G C G T A C G T A A C G T C G T A A C G T A C G T A C G T A G T C
p-value:1e-11
log p-value:-2.737e+01
Information Content per bp:1.530
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.40%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets87.0 +/- 12.5bp
Average Position of motif in Background149.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GAAATATTCAGT
-GAATATTCAT-
A C T G C G T A C G T A C G T A A C G T C G T A A C G T A C G T A G T C C G T A A C T G A C G T
A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GAAATATTCAGT
-GHATATKCAT-
A C T G C G T A C G T A C G T A A C G T C G T A A C G T A C G T A G T C C G T A A C T G A C G T
A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GAAATATTCAGT
NNTNNCAATATTAG--
A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G T A A C G T C G T A A C G T A C G T A G T C C G T A A C T G A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:4
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GAAATATTCAGT
NNTNNCAATATTAG--
A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G T A A C G T C G T A A C G T A C G T A G T C C G T A A C T G A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GAAATATTCAGT
TGAATTATGCAT-
A C G T A C T G C G T A C G T A C G T A A C G T C G T A A C G T A C G T A G T C C G T A A C T G A C G T
C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T A C G T

NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:6
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----GAAATATTCAGT---
NANTGGAAAAANTGAGTCAN
A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G T A A C G T C G T A A C G T A C G T A G T C C G T A A C T G A C G T A C G T A C G T A C G T
T A C G C T G A T C G A C G A T C T A G C T A G T C G A C T G A T C G A T C G A C G T A T C G A G C A T C A T G C G T A T A C G G C A T T G A C C G T A A G C T

MF0010.1_Homeobox_class/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GAAATATTCAGT
-AATTATT----
A C T G C G T A C G T A C G T A A C G T C G T A A C G T A C G T A G T C C G T A A C T G A C G T
A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T A C G T A C G T A C G T

POU4F1/MA0790.1/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GAAATATTCAGT
CATTAATTATTCAT-
A C G T A C G T A C G T A C T G C G T A C G T A C G T A A C G T C G T A A C G T A C G T A G T C C G T A A C T G A C G T
G T A C C T G A A G C T G C A T G C T A G C T A G C A T G C A T C G T A C G A T C A G T G A T C C T G A A G C T A C G T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GAAATATTCAGT
TCATGAATWATTCAT-
A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G T A A C G T C G T A A C G T A C G T A G T C C G T A A C T G A C G T
G A C T G A T C G C T A C G A T C T A G G T C A C G T A C G A T G C A T C G T A G C A T C A G T A G T C G T C A C A G T A C G T

POU4F3/MA0791.1/Jaspar

Match Rank:10
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----GAAATATTCAGT
CTCATTAATTATGCAT-
A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G T A A C G T C G T A A C G T A C G T A G T C C G T A A C T G A C G T
A G T C C A G T G T A C C T G A G A C T G C A T G C T A G C T A G C A T G C A T G C T A C G A T C A T G G A T C T C G A G A C T A C G T