Information for 17-CTCATATTTGGG (Motif 20)

A G T C A C G T A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C T G A C T G A C T G
Reverse Opposite:
A G T C A G T C A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C T G C G T A A C T G
p-value:1e-4
log p-value:-9.599e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets156.0 +/- 0.0bp
Average Position of motif in Background38.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SRF/MA0083.3/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CTCATATTTGGG--
TGNCCATATATGGTCA
A C G T A C G T A G T C A C G T A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C T G A C T G A C T G A C G T A C G T
G C A T A C T G G T C A G A T C A T G C C G T A C G A T T G C A A G C T G C T A G C A T T C A G A T C G C A G T T G A C C G T A

MF0008.1_MADS_class/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CTCATATTTGGG
-CCATATATGG-
A G T C A C G T A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C T G A C T G A C T G
A C G T G A T C A G T C G C T A C G A T C G T A C G A T C G T A G C A T C T A G C A T G A C G T

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CTCATATTTGGG
TNCCATATATGG-
A C G T A G T C A C G T A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C T G A C T G A C T G
C A G T A C T G G A T C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G A T C G A C G T

PB0078.1_Srf_1/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTCATATTTGGG-
TNCCATATATGGNA
A C G T A G T C A C G T A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C T G A C T G A C T G A C G T
C A G T C G A T G T A C A G T C C G T A C G A T C G T A G C A T C G T A C G A T C T A G C A T G C G T A C G T A

Arid5a/MA0602.1/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTCATATTTGGG--
CTAATATTGCTAAA
A G T C A C G T A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C T G A C T G A C T G A C G T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTCATATTTGGG--
CTAATATTGCTAAA
A G T C A C G T A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C T G A C T G A C T G A C G T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CTCATATTTGGG--
GCACAYAGTAGGKCY
A C G T A G T C A C G T A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C T G A C T G A C T G A C G T A C G T
C T A G G A T C T C G A A T G C T C G A A G C T C T G A A C T G A C G T C T G A A C T G A C T G A C G T A G T C G A T C

LHX2/MA0700.2/Jaspar

Match Rank:8
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CTCATATTTGGG-
--NNTAATTGGNN
A G T C A C G T A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C T G A C T G A C T G A C G T
A C G T A C G T C G T A G C A T C G A T C G T A G C T A C G A T C G A T C T A G T A C G G C A T G C A T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CTCATATTTGGG
GKVTCADRTTWC--
A C G T A C G T A G T C A C G T A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C T G A C T G A C T G
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T A C G T

PB0092.1_Zbtb7b_1/Jaspar

Match Rank:10
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CTCATATTTGGG------
---ATTTTNGGGGGGCNN
A G T C A C G T A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C T G A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A C A G T G C A T C G A T C G A T C G A T C A T G C T A G A C T G A C T G A C T G A T C G A G T C G A C T G A C T