Information for 17-CCCATTGC (Motif 38)

A T G C A G T C A T G C C T G A A G C T A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C G T C A C T G A A G C T A T C G A C T G A T C G
p-value:1e-4
log p-value:-9.482e+00
Information Content per bp:1.852
Number of Target Sequences with motif48.0
Percentage of Target Sequences with motif5.22%
Number of Background Sequences with motif1372.3
Percentage of Background Sequences with motif2.87%
Average Position of motif in Targets94.0 +/- 45.2bp
Average Position of motif in Background100.2 +/- 58.8bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.31
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0132.1_Hbp1_2/Jaspar

Match Rank:1
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----CCCATTGC-----
TGTTCCCATTGTGTACT
A C G T A C G T A C G T A C G T A T G C A G T C A T G C C T G A A G C T A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

RFX3/MA0798.2/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CCCATTGC-----
TNCCATAGCAACNN
A C G T A T G C A G T C A T G C C T G A A G C T A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G T C G A T C G T C A A G C T C T G A C T A G G A T C C T G A T C G A G A T C T G A C T C A G

SOX13/MA1120.1/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CCCATTGC--
NNCCATTGTNN
A C G T A T G C A G T C A T G C C T G A A G C T A C G T A C T G A G T C A C G T A C G T
C G A T A C T G A G T C G A T C C G T A G A C T C G A T T C A G G A C T A G C T G A C T

SOX2/MA0143.4/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CCCATTGC--
NNCCATTGTNN
A C G T A T G C A G T C A T G C C T G A A G C T A C G T A C T G A G T C A C G T A C G T
C G A T G C A T G A T C G A T C G C T A A G C T C G A T C T A G C G A T G C A T G C A T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CCCATTGC---
-CCATTGTTYB
A T G C A G T C A T G C C T G A A G C T A C G T A C T G A G T C A C G T A C G T A C G T
A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CCCATTGC----
TTGCCATGGCAACN
A C G T A C G T A T G C A G T C A T G C C T G A A G C T A C G T A C T G A G T C A C G T A C G T A C G T A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

SOX9/MA0077.1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CCCATTGC--
-CCATTGTTC
A T G C A G T C A T G C C T G A A G C T A C G T A C T G A G T C A C G T A C G T
A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCCATTGC--
NCCATTGTTC
A T G C A G T C A T G C C T G A A G C T A C G T A C T G A G T C A C G T A C G T
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer

Match Rank:9
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CCCATTGC-----
-CCATTGTTYYBB
A T G C A G T C A T G C C T G A A G C T A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A T G C G A T C C G T A A C G T A C G T A C T G A C G T A G C T A G C T A G T C A T C G A C T G

SOX18/MA1563.1/Jaspar

Match Rank:10
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CCCATTGC-
-GCATTGTN
A T G C A G T C A T G C C T G A A G C T A C G T A C T G A G T C A C G T
A C G T A T C G A G T C C T G A A C G T A G C T A C T G G A C T A T C G