Information for 4-GAGGCAGCTTGA (Motif 4)

A C T G C G T A A C T G A C T G A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A C G T A A C T G A G T C A C G T A C T G A G T C A G T C A C G T A G T C
p-value:1e-4
log p-value:-1.023e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets113.0 +/- 0.0bp
Average Position of motif in Background34.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GAGGCAGCTTGA
----AAGCTTG-
A C T G C G T A A C T G A C T G A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A
A C G T A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T

BHLHE22(var.2)/MA1635.1/Jaspar

Match Rank:2
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GAGGCAGCTTGA
--NNCAGCTGNN
A C T G C G T A A C T G A C T G A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A
A C G T A C G T A T G C T A C G A T G C T C G A A T C G T A G C A G C T T C A G A T G C T A C G

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GAGGCAGCTTGA--------
GAAGTANCACGAATNMRAGT
A C T G C G T A A C T G A C T G A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GAGGCAGCTTGA
TGAGTCAGCA---
A C G T A C T G C G T A A C T G A C T G A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T

Tcf12/MA0521.1/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GAGGCAGCTTGA-
--AACAGCTGCAG
A C T G C G T A A C T G A C T G A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A A C G T
A C G T A C G T T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G T A G C C G T A T A C G

PB0149.1_Myb_2/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GAGGCAGCTTGA--
NNNTGGCAGTTGGTNN
A C G T A C G T A C T G C G T A A C T G A C T G A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A A C G T A C G T
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GAGGCAGCTTGA
--ANCAGCTG--
A C T G C G T A A C T G A C T G A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A
A C G T A C G T C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GAGGCAGCTTGA-
TCAGNGAGCGTGAC
A C G T A C T G C G T A A C T G A C T G A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A A C G T
A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GAGGCAGCTTGA
AGGAAACAGCTG--
A C G T A C G T A C T G C G T A A C T G A C T G A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A
T C G A A C T G A C T G C G T A C G T A T C G A A G T C C T G A A T C G G T A C G C A T C A T G A C G T A C G T

MYOG/MA0500.2/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GAGGCAGCTTGA-
-NNGCAGCTGCNN
A C T G C G T A A C T G A C T G A G T C C G T A A C T G A G T C A C G T A C G T A C T G C G T A A C G T
A C G T T A G C C T G A T C A G A G T C T C G A A C T G T G A C A G C T T C A G A G T C G A C T A T C G