Information for 5-ATGGGCATTA (Motif 12)

G T C A A C G T A C T G C T A G A C T G G A T C C G T A A C G T C G A T C G T A
Reverse Opposite:
A C G T G C T A C G T A A C G T C T A G A G T C A G T C A G T C G T C A A C G T
p-value:1e-8
log p-value:-1.996e+01
Information Content per bp:1.817
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.04%
Number of Background Sequences with motif125.7
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets135.2 +/- 48.3bp
Average Position of motif in Background97.1 +/- 56.6bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0121.1_Obox1/Jaspar

Match Rank:1
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--ATGGGCATTA-----
TTAAGGGGATTAACTAC
A C G T A C G T G T C A A C G T A C T G C T A G A C T G G A T C C G T A A C G T C G A T C G T A A C G T A C G T A C G T A C G T A C G T
C A G T C G A T T C G A T C G A C T A G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C G T A G T A C C G A T G C T A A G T C

PH0122.1_Obox2/Jaspar

Match Rank:2
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--ATGGGCATTA-----
TGAGGGGGATTAACTAT
A C G T A C G T G T C A A C G T A C T G C T A G A C T G G A T C C G T A A C G T C G A T C G T A A C G T A C G T A C G T A C G T A C G T
C G A T A C T G T C G A C T A G C T A G C T A G C T A G C A T G G T C A C A G T G C A T C G T A C G T A G T A C C G A T G T C A G A C T

PH0139.1_Pitx3/Jaspar

Match Rank:3
Score:0.72
Offset:0
Orientation:forward strand
Alignment:ATGGGCATTA------
AGGGGGATTAGCTGCC
G T C A A C G T A C T G C T A G A C T G G A T C C G T A A C G T C G A T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C

PH0015.1_Crx/Jaspar

Match Rank:4
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--ATGGGCATTA----
CGTTGGGGATTAGCCT
A C G T A C G T G T C A A C G T A C T G C T A G A C T G G A T C C G T A A C G T C G A T C G T A A C G T A C G T A C G T A C G T
A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T

MZF1/MA0056.2/Jaspar

Match Rank:5
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--ATGGGCATTA-
NNNTGGGGATTNN
A C G T A C G T G T C A A C G T A C T G C T A G A C T G G A T C C G T A A C G T C G A T C G T A A C G T
T C G A C G T A C T A G C G A T C T A G C T A G C A T G A C T G G C T A A C G T A C G T C G A T C A T G

PH0123.1_Obox3/Jaspar

Match Rank:6
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--ATGGGCATTA-----
TGAGGGGGATTAACTAT
A C G T A C G T G T C A A C G T A C T G C T A G A C T G G A T C C G T A A C G T C G A T C G T A A C G T A C G T A C G T A C G T A C G T
G C A T A T C G T C G A T A C G C T A G C T A G C T A G C A T G G C T A A C G T G A C T C G T A C G T A G T A C C G A T G T C A G A C T

HIC2/MA0738.1/Jaspar

Match Rank:7
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-ATGGGCATTA
NGTGGGCAT--
A C G T G T C A A C G T A C T G C T A G A C T G G A T C C G T A A C G T C G A T C G T A
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:8
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:ATGGGCATTA--
--NNGGATTAGN
G T C A A C G T A C T G C T A G A C T G G A T C C G T A A C G T C G A T C G T A A C G T A C G T
A C G T A C G T C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C

GSC2/MA0891.1/Jaspar

Match Rank:9
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:ATGGGCATTA--
--GNGGATTAGN
G T C A A C G T A C T G C T A G A C T G G A T C C G T A A C G T C G A T C G T A A C G T A C G T
A C G T A C G T C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G

PITX2/MA1547.1/Jaspar

Match Rank:10
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:ATGGGCATTA-
---GGGATTAN
G T C A A C G T A C T G C T A G A C T G G A T C C G T A A C G T C G A T C G T A A C G T
A C G T A C G T A C G T A C T G T C A G C T A G G T C A A C G T A G C T C G T A C A G T