Information for 19-CCCTAAAA (Motif 36)

A G T C A G T C A G T C A C G T C G T A C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T A C G T C G T A A C T G A C T G A C T G
p-value:1e-2
log p-value:-6.139e+00
Information Content per bp:1.530
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.65%
Number of Background Sequences with motif342.7
Percentage of Background Sequences with motif0.72%
Average Position of motif in Targets106.3 +/- 52.9bp
Average Position of motif in Background98.6 +/- 54.9bp
Strand Bias (log2 ratio + to - strand density)2.1
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:1
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--CCCTAAAA
VGCCATAAAA
A C G T A C G T A G T C A G T C A G T C A C G T C G T A C G T A C G T A C G T A
T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:2
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--CCCTAAAA
KGCCATAAAA
A C G T A C G T A G T C A G T C A G T C A C G T C G T A C G T A C G T A C G T A
C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:3
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CCCTAAAA--
NGYCATAAAWCH
A C G T A C G T A G T C A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C G T A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

CDX1/MA0878.2/Jaspar

Match Rank:4
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CCCTAAAA-
GGCCATAAAAC
A C G T A C G T A G T C A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C G T
C A T G C T A G A G T C T G A C C G T A A C G T C T G A C G T A C T G A G T C A A G T C

PH0064.1_Hoxb9/Jaspar

Match Rank:5
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----CCCTAAAA----
AGAGCCATAAAATTCG
A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CCCTAAAA-
CYHATAAAAN
A C G T A G T C A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C G T
T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:7
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CCCTAAAA
NGCAATTAAA
A C G T A C G T A G T C A G T C A G T C A C G T C G T A C G T A C G T A C G T A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

HOXA13/MA0650.2/Jaspar

Match Rank:8
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CCCTAAAA-
CCCAATAAAAC
A C G T A C G T A G T C A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C G T
T G A C T A G C A G T C G T C A C G T A A C G T C T G A C T G A C G T A G T C A G T A C

TATA-Box(TBP)/Promoter/Homer

Match Rank:9
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CCCTAAAA--
GNCTATAAAAGG
A C G T A C G T A G T C A G T C A G T C A C G T C G T A C G T A C G T A C G T A A C G T A C G T
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:10
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CCCTAAAA
CCYMATAAAA
A C G T A C G T A G T C A G T C A G T C A C G T C G T A C G T A C G T A C G T A
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A