Information for 14-CTAATGGA (Motif 40)

A G T C A C G T C G T A C G T A A C G T A C T G A C T G C G T A
Reverse Opposite:
A C G T A G T C A G T C C G T A A C G T A C G T C G T A A C T G
p-value:1e-4
log p-value:-9.806e+00
Information Content per bp:1.530
Number of Target Sequences with motif86.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif167.2
Percentage of Background Sequences with motif0.45%
Average Position of motif in Targets101.0 +/- 54.4bp
Average Position of motif in Background102.1 +/- 56.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1/MA1608.1/Jaspar

Match Rank:1
Score:0.93
Offset:-2
Orientation:reverse strand
Alignment:--CTAATGGA-
NNCTAATGGNN
A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C G T
A C G T T C A G G A T C C G A T C T G A C G T A G A C T C A T G C T A G T G C A G A C T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:2
Score:0.82
Offset:0
Orientation:forward strand
Alignment:CTAATGGA
CTAATKGV
A G T C A C G T C G T A C G T A A C G T A C T G A C T G C G T A
A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C

BARX1/MA0875.1/Jaspar

Match Rank:3
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:CTAATGGA
NTAATTGN
A G T C A C G T C G T A C G T A A C G T A C T G A C T G C G T A
A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C

VENTX/MA0724.1/Jaspar

Match Rank:4
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:CTAATGGA-
CTAATCGNT
A G T C A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C G T
G A T C A C G T C G T A C G T A C A G T A G T C C T A G A C T G G C A T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:5
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CTAATGGA
GKTAATGR-
A C G T A G T C A C G T C G T A C G T A A C G T A C T G A C T G C G T A
A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T

BSX/MA0876.1/Jaspar

Match Rank:6
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CTAATGGA
NTAATTGG
A G T C A C G T C G T A C G T A A C G T A C T G A C T G C G T A
A G C T A C G T C G T A C G T A A G C T A C G T C T A G A T C G

PB0135.1_Hoxa3_2/Jaspar

Match Rank:7
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--CTAATGGA----
CCTTAATNGNTTTT
A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T
A G T C A T G C G A C T C G A T C G T A C G T A A C G T T C A G A C T G G C A T C G A T G A C T C A G T A G C T

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:8
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CTAATGGA--
NTAATKGTTT
A G T C A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C G T A C G T
A G T C G C A T T C G A T C G A C A G T C A T G T A C G G A C T G A C T A G C T

HOXB3/MA0903.1/Jaspar

Match Rank:9
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CTAATGGA-
NNTAATTANN
A C G T A G T C A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C G T
A C T G A G T C C G A T C T G A C T G A A G C T A C G T C T G A A T C G G A C T

HOXA7/MA1498.1/Jaspar

Match Rank:10
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CTAATGGA
GTAATTGC
A G T C A C G T C G T A C G T A A C G T A C T G A C T G C G T A
A T C G A C G T G T C A C G T A C G A T A C G T T C A G T A G C