Information for 4-GGTGCATTATAT (Motif 5)

A C T G A C T G A C G T A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A A C G T
Reverse Opposite:
C G T A A C G T C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A G T C A G T C
p-value:1e-11
log p-value:-2.599e+01
Information Content per bp:1.530
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets106.8 +/- 30.3bp
Average Position of motif in Background94.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0122.1_Obox2/Jaspar

Match Rank:1
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GGTGCATTATAT--
TGAGGGGGATTAACTAT
A C G T A C G T A C G T A C T G A C T G A C G T A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A A C G T A C G T A C G T
C G A T A C T G T C G A C T A G C T A G C T A G C T A G C A T G G T C A C A G T G C A T C G T A C G T A G T A C C G A T G T C A G A C T

HLF/MA0043.3/Jaspar

Match Rank:2
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GGTGCATTATAT
NNGTTGCATAACNN
A C G T A C G T A C T G A C T G A C G T A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A A C G T
G C A T C A G T T C A G G A C T C A G T C T A G G A T C T C G A G A C T G T C A C G T A A G T C G T C A G C T A

ZNF143/MA0088.2/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GGTGCATTATAT---
CAATGCATTGTGGGTA
A C G T A C T G A C T G A C G T A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A A C G T A C G T A C G T A C G T
G A T C C T G A C T G A C A G T A C T G A G T C G C T A G A C T A G C T T C A G G A C T A C T G A C T G A C T G G C A T T C G A

PB0146.1_Mafk_2/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GGTGCATTATAT--
CCTTGCAATTTTTNN
A C G T A C T G A C T G A C G T A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A A C G T A C G T A C G T
A G T C T A G C C A G T A C G T C T A G G T A C C T G A G T C A C G A T C G A T G A C T G A C T A G C T C A G T A G T C

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:5
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GGTGCATTATAT--
--TGAATTATGCAT
A C T G A C T G A C G T A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A A C G T A C G T A C G T
A C G T A C G T C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T

PB0174.1_Sox30_2/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GGTGCATTATAT-----
-NCGTATTATAATCNTA
A C T G A C T G A C G T A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A T G C A G T C A C T G A C G T G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G A C G C A T C A G T C T G A

PB0079.1_Sry_1/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GGTGCATTATAT-----
-TATAATTATAATATTC
A C T G A C T G A C G T A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A C A G T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C T G A C G A T C A G T T G A C

POL012.1_TATA-Box/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GGTGCATTATAT--
NNNNNNCTTTTATAN
A C G T A C T G A C T G A C G T A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A A C G T A C G T A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

TBP/MA0108.2/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GGTGCATTATAT--
NNNNNNCTTTTATAN
A C G T A C T G A C T G A C G T A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A A C G T A C G T A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

CEBPG(var.2)/MA1636.1/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---GGTGCATTATAT
NNGATTGCATCATNN
A C G T A C G T A C G T A C T G A C T G A C G T A C T G A G T C C G T A A C G T A C G T C G T A A C G T C G T A A C G T
C T G A C G A T C A T G T C G A G C A T C A G T C A T G G A T C C T G A G A C T G T A C G C T A A G C T G C A T G C A T