Information for 1-ATCCATCACT (Motif 9)

G T C A A C G T A G T C A G T C C G T A A C G T A G T C C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G C G A T A C T G G T C A C G A T A C T G A C T G C G T A A C G T
p-value:1e-13
log p-value:-3.159e+01
Information Content per bp:1.891
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.46%
Number of Background Sequences with motif121.6
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets102.0 +/- 51.9bp
Average Position of motif in Background99.1 +/- 58.8bp
Strand Bias (log2 ratio + to - strand density)-3.3
Multiplicity (# of sites on avg that occur together)1.52
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:1
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--ATCCATCACT
YCATCMATCA--
A C G T A C G T G T C A A C G T A G T C A G T C C G T A A C G T A G T C C G T A A G T C A C G T
G A T C G T A C C T G A A C G T G A T C G T C A C T G A A C G T G A T C G C T A A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:2
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---ATCCATCACT
GYCATCMATCAT-
A C G T A C G T A C G T G T C A A C G T A G T C A G T C C G T A A C G T A G T C C G T A A G T C A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T

PB0144.1_Lef1_2/Jaspar

Match Rank:3
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----ATCCATCACT--
GAAGATCAATCACTTA
A C G T A C G T A C G T A C G T G T C A A C G T A G T C A G T C C G T A A C G T A G T C C G T A A G T C A C G T A C G T A C G T
T A C G C G T A T C G A T A C G G C T A C G A T A G T C C G T A C T G A C A G T G A T C C T G A G T A C A G C T G C A T C G T A

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:4
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----ATCCATCACT--
GAAGATCAATCACTAA
A C G T A C G T A C G T A C G T G T C A A C G T A G T C A G T C C G T A A C G T A G T C C G T A A G T C A C G T A C G T A C G T
T A C G C T A G T C G A T A C G G C T A G C A T A G T C C G T A C T G A C A G T G A T C C T G A A T G C A C G T G C T A C G T A

PH0134.1_Pbx1/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--ATCCATCACT-----
TCACCCATCAATAAACA
A C G T A C G T G T C A A C G T A G T C A G T C C G T A A C G T A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

PBX1/MA0070.1/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--ATCCATCACT
CCATCAATCAAA
A C G T A C G T G T C A A C G T A G T C A G T C C G T A A C G T A G T C C G T A A G T C A C G T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

MEIS1(var.2)/MA1639.1/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---ATCCATCACT
GTCATCAATCATT
A C G T A C G T A C G T G T C A A C G T A G T C A G T C C G T A A C G T A G T C C G T A A G T C A C G T
C T A G G A C T G A T C C T G A C A G T G T A C G T C A G C T A G C A T G T A C G C T A G C A T G C A T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--ATCCATCACT
TCATCAATCA--
A C G T A C G T G T C A A C G T A G T C A G T C C G T A A C G T A G T C C G T A A G T C A C G T
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:9
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----ATCCATCACT
RGCCATYAATCA--
A C G T A C G T A C G T A C G T G T C A A C G T A G T C A G T C C G T A A C G T A G T C C G T A A G T C A C G T
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T A C G T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--ATCCATCACT
GGCTCYAKCAYC
A C G T A C G T G T C A A C G T A G T C A G T C C G T A A C G T A G T C C G T A A G T C A C G T
C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C