Information for 14-CTAAATAGGTCT (Motif 15)

A G T C A C G T C G T A C G T A C G T A A C G T C G T A A C T G A C T G A C G T A G T C A C G T
Reverse Opposite:
C G T A A C T G C G T A A G T C A G T C A C G T C G T A A C G T A C G T A C G T C G T A A C T G
p-value:1e-4
log p-value:-9.592e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets99.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORC/MA1151.1/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CTAAATAGGTCT
ATAAGTAGGTCA
A G T C A C G T C G T A C G T A C G T A A C G T C G T A A C T G A C T G A C G T A G T C A C G T
C T G A C G A T G C T A C G T A A C T G A C G T T C G A C A T G C T A G A C G T A G T C C T G A

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CTAAATAGGTCT-
-WAABTAGGTCAV
A G T C A C G T C G T A C G T A C G T A A C G T C G T A A C T G A C T G A C G T A G T C A C G T A C G T
A C G T C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G

RORA(var.2)/MA0072.1/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CTAAATAGGTCT-
TATAAGTAGGTCAA
A C G T A G T C A C G T C G T A C G T A C G T A A C G T C G T A A C T G A C T G A C G T A G T C A C G T A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

PH0094.1_Lhx4/Jaspar

Match Rank:4
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CTAAATAGGTCT-
TAAACTAATTAGCTTTG
A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A C G T A A C G T C G T A A C T G A C T G A C G T A G T C A C G T A C G T
C A G T G T C A C G T A T C G A A T G C G A C T T C G A C T G A A G C T A G C T C T G A A T C G A T G C A C G T C G A T A C G T C T A G

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CTAAATAGGTCT
--AAYTAGGTCA
A G T C A C G T C G T A C G T A C G T A A C G T C G T A A C T G A C T G A C G T A G T C A C G T
A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:6
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CTAAATAGGTCT
--AAYTAGGTCA
A G T C A C G T C G T A C G T A C G T A A C G T C G T A A C T G A C T G A C G T A G T C A C G T
A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

PH0058.1_Hoxb3/Jaspar

Match Rank:7
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----CTAAATAGGTCT
TNNNACTAATTAGNTCA
A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A C G T A A C G T C G T A A C T G A C T G A C G T A G T C A C G T
G C A T G A T C A G T C G T C A T C G A A T G C G A C T G T C A C G T A C G A T A C G T C T G A T A C G A T G C A C G T A G T C C G T A

PH0155.1_Prrx2/Jaspar

Match Rank:8
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----CTAAATAGGTCT
NTTCGCTAATTAGCTNT
A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A C G T A A C G T C G T A A C T G A C T G A C G T A G T C A C G T
G A C T G C A T G A C T G T A C T C A G G A T C A G C T C T G A C G T A G A C T A G C T C T G A C T A G A G T C C A G T A C G T G C A T

PH0031.1_Evx1/Jaspar

Match Rank:9
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----CTAAATAGGTCT
NNNCACTAATTAGTNNT
A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A C G T A A C G T C G T A A C T G A C T G A C G T A G T C A C G T
A C T G G C A T A T G C T A G C T C G A A T G C G A C T G T C A G T C A A C G T A C G T C T G A T A C G A G C T C A G T A G T C C G A T

PH0027.1_Emx2/Jaspar

Match Rank:10
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----CTAAATAGGTCT
NNCCACTAATTAGNNNT
A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A C G T A A C G T C G T A A C T G A C T G A C G T A G T C A C G T
T C A G C A G T A T G C T G A C T C G A A G T C G A C T G T C A G C T A C A G T A C G T C T G A T C A G A G C T A C T G A T C G C G A T