Information for 3-MTGAAACTGGAT (Motif 3)

T G A C A C G T A T C G C G T A G T C A T C G A A T G C A C G T A C T G C T A G C G T A A C G T
Reverse Opposite:
G T C A A C G T A G T C T G A C G T C A T A C G A C G T C A G T A C G T T A G C T G C A A C T G
p-value:1e-7
log p-value:-1.699e+01
Information Content per bp:1.619
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif60.00%
Number of Background Sequences with motif2140.5
Percentage of Background Sequences with motif2.45%
Average Position of motif in Targets91.3 +/- 57.0bp
Average Position of motif in Background99.3 +/- 76.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SIX2/MA1119.1/Jaspar

Match Rank:1
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--MTGAAACTGGAT--
AACTGAAACCTGATAC
A C G T A C G T T G A C A C G T A T C G C G T A G T C A T C G A A T G C A C G T A C T G C T A G C G T A A C G T A C G T A C G T
G C T A G C T A T G A C C G A T C A T G G C T A G T C A C T G A G A T C G T A C G C A T C T A G C G T A A C G T G T C A G A T C

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-MTGAAACTGGAT
ACTGAAACCA---
A C G T T G A C A C G T A T C G C G T A G T C A T C G A A T G C A C G T A C T G C T A G C G T A A C G T
G C T A T A G C A G C T A T C G G T C A C G T A G C T A A T G C G A T C C T G A A C G T A C G T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:MTGAAACTGGAT--
--GWAAYHTGAKMC
T G A C A C G T A T C G C G T A G T C A T C G A A T G C A C G T A C T G C T A G C G T A A C G T A C G T A C G T
A C G T A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

TFCP2/MA0145.3/Jaspar

Match Rank:4
Score:0.64
Offset:3
Orientation:forward strand
Alignment:MTGAAACTGGAT-
---AAACCGGTTT
T G A C A C G T A T C G C G T A G T C A T C G A A T G C A C G T A C T G C T A G C G T A A C G T A C G T
A C G T A C G T A C G T T C G A C G T A C G T A T A G C G A T C C T A G A T C G G C A T G A C T G A C T

Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:MTGAAACTGGAT----
-TGWAAYCTGABACCB
T G A C A C G T A T C G C G T A G T C A T C G A A T G C A C G T A C T G C T A G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C A G T A C T G C G T A G T C A C G T A A G C T G A T C A G C T A C T G C G T A A G T C G T C A A G T C A G T C A T C G

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:6
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:MTGAAACTGGAT--
--GWAAYHTGABMC
T G A C A C G T A T C G C G T A G T C A T C G A A T G C A C G T A C T G C T A G C G T A A C G T A C G T A C G T
A C G T A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

PRDM4/MA1647.1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:MTGAAACTGGAT
NAGAAACAGNN-
T G A C A C G T A T C G C G T A G T C A T C G A A T G C A C G T A C T G C T A G C G T A A C G T
C G A T C G T A C A T G C G T A T C G A C G T A A G T C G C T A A T C G G T C A G A T C A C G T

GRHL1/MA0647.1/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:forward strand
Alignment:MTGAAACTGGAT--
--AAAACCGGTTTT
T G A C A C G T A T C G C G T A G T C A T C G A A T G C A C G T A C T G C T A G C G T A A C G T A C G T A C G T
A C G T A C G T G T C A C G T A C T G A C G T A A G T C G T A C C T A G A T C G G C A T G A C T G C A T C G A T

GRHL2/MA1105.2/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:MTGAAACTGGAT--
--AAAACAGGTTTT
T G A C A C G T A T C G C G T A G T C A T C G A A T G C A C G T A C T G C T A G C G T A A C G T A C G T A C G T
A C G T A C G T T G C A T C G A C T G A C T G A T A G C G C T A C T A G T A C G G A C T G A C T A G C T C A G T

SIX1/MA1118.1/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:MTGAAACTGGAT-
--GTAACCTGATA
T G A C A C G T A T C G C G T A G T C A T C G A A T G C A C G T A C T G C T A G C G T A A C G T A C G T
A C G T A C G T C A T G C G A T G C T A C G T A G A T C G T A C G C A T C T A G C G T A A C G T G T C A