Information for 19-AACTAGCCAT (Motif 37)

C G T A C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G A C T G A G T C A C G T C G T A A C T G A C G T A C G T
p-value:1e-3
log p-value:-7.225e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif9.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets82.0 +/- 0.0bp
Average Position of motif in Background90.9 +/- 26.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0168.1_Hnf1b/Jaspar

Match Rank:1
Score:0.63
Offset:-7
Orientation:forward strand
Alignment:-------AACTAGCCAT
AGCTGTTAACTAGCCGT
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C G T
C G T A A C T G A G T C A C G T C T A G G C A T G A C T C G T A G C T A A G T C A G C T C G T A T C A G A G T C G A T C A T C G A G C T

PH0040.1_Hmbox1/Jaspar

Match Rank:2
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------AACTAGCCAT-
GANGTTAACTAGTTTNN
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

HMBOX1/MA0895.1/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AACTAGCCAT
GTTAACTAGN---
A C G T A C G T A C G T C G T A C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C G T
A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AACTAGCCAT
NNACTTGCCTT
A C G T C G T A C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C G T
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:5
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AACTAGCCAT---
NNAATTAGTCACGGT
A C G T A C G T C G T A C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T

Smad4/MA1153.1/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AACTAGCCAT
-TCTAGACA-
C G T A C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T

PH0034.1_Gbx2/Jaspar

Match Rank:7
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------AACTAGCCAT-
AGCGCTAATTAGCGATT
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C G T A C G T
C G T A T A C G T G A C T C A G A T G C A G C T G T C A G C T A C A G T A C G T C T G A T A C G A G T C T A C G C T G A A C G T C A G T

POL004.1_CCAAT-box/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AACTAGCCAT---
-ACTAGCCAATCA
C G T A C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

LBX1/MA0618.1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AACTAGCCAT
TTAATTAG----
A C G T A C G T C G T A C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C G T
C G A T A G C T C G T A C G T A A G C T C G A T C T G A A T C G A C G T A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.57
Offset:4
Orientation:forward strand
Alignment:AACTAGCCAT----
----GGCCATTAAC
C G T A C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C