Information for 2-CACGTAAG (Motif 7)

A G T C C G T A A G T C A C T G A C G T C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T C G T A A G T C A C T G A C G T A C T G
p-value:1e-7
log p-value:-1.803e+01
Information Content per bp:1.530
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.05%
Number of Background Sequences with motif48.5
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets142.3 +/- 45.4bp
Average Position of motif in Background105.3 +/- 58.6bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:1
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--CACGTAAG
BGCACGTA--
A C G T A C G T A G T C C G T A A G T C A C T G A C G T C G T A C G T A A C T G
A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:2
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-CACGTAAG
GCACGTAY-
A C G T A G T C C G T A A G T C A C T G A C G T C G T A C G T A A C T G
C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:3
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-CACGTAAG-
GCACGTACCC
A C G T A G T C C G T A A G T C A C T G A C G T C G T A C G T A A C T G A C G T
C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

GMEB2/MA0862.1/Jaspar

Match Rank:4
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-CACGTAAG
TTACGTAA-
A C G T A G T C C G T A A G T C A C T G A C G T C G T A C G T A A C T G
A C G T C A G T C T G A G T A C A T C G A G C T T G C A T G C A A C G T

HIF1A/MA1106.1/Jaspar

Match Rank:5
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---CACGTAAG
NNGCACGTNC-
A C G T A C G T A C G T A G T C C G T A A G T C A C T G A C G T C G T A C G T A A C T G
T A C G T A C G C A T G A G T C T C G A A G T C C T A G G A C T T C G A A T G C A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CACGTAAG---
CAGGTAAGTAT
A G T C C G T A A G T C A C T G A C G T C G T A C G T A A C T G A C G T A C G T A C G T
T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:7
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---CACGTAAG
TBGCACGCAA-
A C G T A C G T A C G T A G T C C G T A A G T C A C T G A C G T C G T A C G T A A C T G
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:8
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CACGTAAG
GCACGTNC-
A C G T A G T C C G T A A G T C A C T G A C G T C G T A C G T A A C T G
A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C A C G T

CREB3L4/MA1474.1/Jaspar

Match Rank:9
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CACGTAAG-
TGCCACGTCACC
A C G T A C G T A C G T A G T C C G T A A G T C A C T G A C G T C G T A C G T A A C T G A C G T
A G C T C A T G G T A C G T A C T C G A A G T C T C A G A G C T T A G C T C G A A G T C A T G C

Arnt/MA0004.1/Jaspar

Match Rank:10
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CACGTAAG
CACGTG--
A G T C C G T A A G T C A C T G A C G T C G T A C G T A A C T G
A G T C C G T A A G T C A C T G A G C T A C T G A C G T A C G T