Information for 13-TTCATGTATATG (Motif 13)

A C G T A C G T A G T C C G T A A C G T A C T G A C G T C G T A A C G T C G T A A C G T A C T G
Reverse Opposite:
A G T C C G T A A C G T C G T A A C G T C G T A A G T C C G T A A C G T A C T G C G T A C G T A
p-value:1e-4
log p-value:-1.055e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets143.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.68
Offset:3
Orientation:forward strand
Alignment:TTCATGTATATG-
---ATGMATATDC
A C G T A C G T A G T C C G T A A C G T A C T G A C G T C G T A A C G T C G T A A C G T A C T G A C G T
A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TTCATGTATATG---
CTCATGAATATTCAT
A C G T A C G T A G T C C G T A A C G T A C T G A C G T C G T A A C G T C G T A A C G T A C T G A C G T A C G T A C G T
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

PH0087.1_Irx6/Jaspar

Match Rank:3
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----TTCATGTATATG
ANTTNTACATGTANTTN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C G T C G T A A C G T C G T A A C G T A C T G
G C T A C G A T C G A T G C A T A C G T C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G A C T C G A T C G A T C G A T

PH0082.1_Irx2/Jaspar

Match Rank:4
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----TTCATGTATATG
ANTNTTACATGTATNTA
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C G T C G T A A C G T C G T A A C G T A C T G
C G T A T G C A G C A T G A C T G A C T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A G A C T G C A T C G A T G C T A

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:5
Score:0.66
Offset:2
Orientation:forward strand
Alignment:TTCATGTATATG-----
--YATGCATATRCATRT
A C G T A C G T A G T C C G T A A C G T A C T G A C G T C G T A A C G T C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T

PH0084.1_Irx3_2/Jaspar

Match Rank:6
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----TTCATGTATATG
NNTATTACATGTANNNT
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C G T C G T A A C G T C G T A A C G T A C T G
G C A T C T G A G C A T G C T A A C G T C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A C G A T G C T A G C A T G C A T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.65
Offset:3
Orientation:forward strand
Alignment:TTCATGTATATG-
---ATGAATATTC
A C G T A C G T A G T C C G T A A C G T A C T G A C G T C G T A A C G T C G T A A C G T A C T G A C G T
A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

PH0086.1_Irx5/Jaspar

Match Rank:8
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TTCATGTATATG
ANTNNTACATGTANNTN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C G T C G T A A C G T C G T A A C G T A C T G
G C T A G T C A G C A T G C A T C A G T C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A C G A T G C T A G C A T G C A T

PH0083.1_Irx3_1/Jaspar

Match Rank:9
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----TTCATGTATATG
ANTATTACATGTANNNN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C G T C G T A A C G T C G T A A C G T A C T G
G C T A C T A G G C A T G C T A A C G T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A A G C T G C A T G A C T G C A T

PH0085.1_Irx4/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----TTCATGTATATG-
AATATACATGTAAAACA
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C G T C G T A A C G T C G T A A C G T A C T G A C G T
C G T A C G T A G C A T C T G A C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G T C A C G T A C G T A A G T C C G T A