Information for 11-AGGCCAATAG (Motif 30)

C G T A A C T G A C T G A G T C A G T C C G T A C G T A A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A A C G T A C G T A C T G A C T G A G T C A G T C A C G T
p-value:1e-3
log p-value:-7.224e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif11.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets173.0 +/- 0.0bp
Average Position of motif in Background139.4 +/- 78.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFYB/MA0502.2/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-AGGCCAATAG-
NTGGCCAATGAG
A C G T C G T A A C T G A C T G A G T C A G T C C G T A C G T A A C G T C G T A A C T G A C G T
A G T C A C G T C T A G T C A G G A T C G T A C G T C A T C G A C G A T T A C G T C G A T A C G

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.74
Offset:1
Orientation:forward strand
Alignment:AGGCCAATAG-
-AGCCAATCGG
C G T A A C T G A C T G A G T C A G T C C G T A C G T A A C G T C G T A A C T G A C G T
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGGCCAATAG
ACTAGCCAATCA
A C G T A C G T C G T A A C T G A C T G A G T C A G T C C G T A C G T A A C G T C G T A A C T G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

Isl1/MA1608.1/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AGGCCAATAG--
-ATCCATTAGCA
C G T A A C T G A C T G A G T C A G T C C G T A C G T A A C G T C G T A A C T G A C G T A C G T
A C G T C T G A A C G T G A T C G T A C C T G A G C A T G A C T G C T A C T A G A G T C T G C A

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGGCCAATAG----
GAGGTCAAAAGGTCA
A C G T C G T A A C T G A C T G A G T C A G T C C G T A C G T A A C G T C G T A A C T G A C G T A C G T A C G T A C G T
T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A

RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer

Match Rank:6
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---AGGCCAATAG
CAAAGKTCAA---
A C G T A C G T A C G T C G T A A C T G A C T G A G T C A G T C C G T A C G T A A C G T C G T A A C T G
G A T C G T C A T C G A T C G A C T A G C A T G A G C T G T A C T C G A T C G A A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGGCCAATAG
CGTGCCAAG--
A C G T C G T A A C T G A C T G A G T C A G T C C G T A C G T A A C G T C G T A A C T G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AGGCCAATAG
WAAGTAAAYA-
A C G T C G T A A C T G A C T G A G T C A G T C C G T A C G T A A C G T C G T A A C T G
G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGGCCAATAG
CTAGGCCT----
A C G T A C G T C G T A A C T G A C T G A G T C A G T C C G T A C G T A A C G T C G T A A C T G
T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:10
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AGGCCAATAG
CAAAGGTCAAGGG
A C G T A C G T A C G T C G T A A C T G A C T G A G T C A G T C C G T A C G T A A C G T C G T A A C T G
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G