Information for 24-GCCAAAGATC (Motif 42)

A C T G A G T C A G T C C G T A C G T A C G T A A C T G C G T A A C G T A G T C
Reverse Opposite:
A C T G C G T A A C G T A G T C A C G T A C G T A C G T A C T G A C T G A G T C
p-value:1e-3
log p-value:-7.018e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif8.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets137.0 +/- 0.0bp
Average Position of motif in Background112.2 +/- 74.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GCCAAAGATC
CGTGCCAAG----
A C G T A C G T A C G T A C T G A G T C A G T C C G T A C G T A C G T A A C T G C G T A A C G T A G T C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer

Match Rank:2
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GCCAAAGATC-
VNAGGKCAAAGGTCA
A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A C G T A C G T A A C T G C G T A A C G T A G T C A C G T
T G A C C G A T C T G A C T A G C T A G A C G T A T G C T G C A T C G A C T G A C T A G C A T G A C G T A G T C C G T A

HNF4A(var.2)/MA1494.1/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GCCAAAGATC--
GGGTCCAAAGGTCAC
A C G T A C G T A C G T A C T G A G T C A G T C C G T A C G T A C G T A A C T G C G T A A C G T A G T C A C G T A C G T
T C A G C T A G C A T G C A G T G A T C G A T C C T G A C G T A C T G A A C T G C A T G A C G T A G T C C T G A G T A C

Nr2f6/MA0677.1/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GCCAAAGATC-
GAGGTCAAAGGTCA
A C G T A C G T A C G T A C T G A G T C A G T C C G T A C G T A C G T A A C T G C G T A A C G T A G T C A C G T
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:5
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----GCCAAAGATC-
CANAGNNCAAAGTCCA
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A C G T A C G T A A C T G C G T A A C G T A G T C A C G T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

Rxra/MA0512.2/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GCCAAAGATC-
GGGGTCAAAGGTCA
A C G T A C G T A C G T A C T G A G T C A G T C C G T A C G T A C G T A A C T G C G T A A C G T A G T C A C G T
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A

NR2F1(var.2)/MA1537.1/Jaspar

Match Rank:7
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GCCAAAGATC--
GAGGTCAAAGGTCAC
A C G T A C G T A C G T A C T G A G T C A G T C C G T A C G T A C G T A A C T G C G T A A C G T A G T C A C G T A C G T
T C A G T C G A C A T G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C C T G A G T A C

RXRB/MA0855.1/Jaspar

Match Rank:8
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GCCAAAGATC-
GGGGTCAAAGGTCA
A C G T A C G T A C G T A C T G A G T C A G T C C G T A C G T A C G T A A C T G C G T A A C G T A G T C A C G T
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A

RXRG/MA0856.1/Jaspar

Match Rank:9
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GCCAAAGATC-
GGGGTCAAAGGTCA
A C G T A C G T A C G T A C T G A G T C A G T C C G T A C G T A C G T A A C T G C G T A A C G T A G T C A C G T
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GCCAAAGATC-
TGGGGCAAAGGTCA
A C G T A C G T A C G T A C T G A G T C A G T C C G T A C G T A C G T A A C T G C G T A A C G T A G T C A C G T
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A