Information for 5-YAMYCTMTKTCC (Motif 5)

G A T C C G T A G T C A A G C T A G T C A C G T G T A C A C G T C A G T A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A G T C A C G T A A C T G C G T A C T A G T C A G A C G T A C G T C T A G
p-value:1e-6
log p-value:-1.562e+01
Information Content per bp:1.824
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif47.5
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets138.0 +/- 47.3bp
Average Position of motif in Background100.0 +/- 73.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFATC1/MA0624.1/Jaspar

Match Rank:1
Score:0.63
Offset:5
Orientation:forward strand
Alignment:YAMYCTMTKTCC---
-----ATTTTCCATT
G A T C C G T A G T C A A G C T A G T C A C G T G T A C A C G T C A G T A C G T A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G C A T C G A T G A C T G A C T T G A C G A T C C T G A G A C T G C A T

NFATC3/MA0625.1/Jaspar

Match Rank:2
Score:0.63
Offset:5
Orientation:forward strand
Alignment:YAMYCTMTKTCC---
-----ATTTTCCATT
G A T C C G T A G T C A A G C T A G T C A C G T G T A C A C G T C A G T A C G T A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G A C T C G A T G C A T A G C T G T A C A T G C C T G A G A C T G C A T

PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:YAMYCTMTKTCC---
TGACCTTTGMCCTNB
G A T C C G T A G T C A A G C T A G T C A C G T G T A C A C G T C A G T A C G T A G T C A G T C A C G T A C G T A C G T
G C A T T C A G T G C A G T A C G A T C A G C T A G C T A C G T T A C G T G C A G A T C G A T C G A C T G C T A A C T G

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:YAMYCTMTKTCC---
TGACCTTTGCCCTAN
G A T C C G T A G T C A A G C T A G T C A C G T G T A C A C G T C A G T A C G T A G T C A G T C A C G T A C G T A C G T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

PRDM4/MA1647.1/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:forward strand
Alignment:YAMYCTMTKTCC-
--GTCTGTTTCTA
G A T C C G T A G T C A A G C T A G T C A C G T G T A C A C G T C A G T A C G T A G T C A G T C A C G T
A C G T A C G T C T A G C A G T T A G C C G A T T C A G G C A T A G C T G C A T G T A C G C A T G C T A

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:6
Score:0.60
Offset:3
Orientation:forward strand
Alignment:YAMYCTMTKTCC-
---YCTTTGTTCC
G A T C C G T A G T C A A G C T A G T C A C G T G T A C A C G T C A G T A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer

Match Rank:7
Score:0.59
Offset:4
Orientation:forward strand
Alignment:YAMYCTMTKTCC----
----NNAYTTCCTGHN
G A T C C G T A G T C A A G C T A G T C A C G T G T A C A C G T C A G T A C G T A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C C T G A A G T C C G A T A C G T A G T C A G T C A C G T A T C G G A C T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:YAMYCTMTKTCC--
TGACCTTTGCCCTA
G A T C C G T A G T C A A G C T A G T C A C G T G T A C A C G T C A G T A C G T A G T C A G T C A C G T A C G T
A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:YAMYCTMTKTCC--
TGACCTTTGCCCCA
G A T C C G T A G T C A A G C T A G T C A C G T G T A C A C G T C A G T A C G T A G T C A G T C A C G T A C G T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A

NFATC4/MA1525.1/Jaspar

Match Rank:10
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:YAMYCTMTKTCC---
-----ATTTTCCATN
G A T C C G T A G T C A A G C T A G T C A C G T G T A C A C G T C A G T A C G T A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A C G T C A G T A C G T A C G T A G T C A G T C C T G A G A C T A G C T