Information for 25-AAGGGATTTTCA (Motif 29)

C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T A C G T A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A C G T A C G T A C G T A A C G T A G T C A G T C A G T C A C G T A C G T
p-value:1e-3
log p-value:-8.872e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets110.0 +/- 0.0bp
Average Position of motif in Background5.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AAGGGATTTTCA
NGGGGATTTCCC
C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T A C G T A C G T A G T C C G T A
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:2
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:AAGGGATTTTCA
--GGGAATTTCC
C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T A C G T A C G T A G T C C G T A
A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:AAGGGATTTTCA
--GGGGATTTCC
C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T A C G T A C G T A G T C C G T A
A C G T A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.65
Offset:2
Orientation:forward strand
Alignment:AAGGGATTTTCA
--GGGAATTTCC
C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T A C G T A C G T A G T C C G T A
A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C

PH0137.1_Pitx1/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AAGGGATTTTCA--
TTAGAGGGATTAACAAT
A C G T A C G T A C G T C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

PH0121.1_Obox1/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AAGGGATTTTCA--
TTAAGGGGATTAACTAC
A C G T A C G T A C G T C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T
C A G T C G A T T C G A T C G A C T A G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C G T A G T A C C G A T G C T A A G T C

REL/MA0101.1/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AAGGGATTTTCA
-GGGGATTTCC-
C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T A C G T A C G T A G T C C G T A
A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AAGGGATTTTCA
-NGGGATTA---
C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T A C G T A C G T A G T C C G T A
A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T A C G T

OTX2/MA0712.2/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AAGGGATTTTCA
AAGGGATTAGAA
C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T A C G T A C G T A G T C C G T A
G C T A C G T A C T A G C T A G C T A G G T C A C A G T G C A T C G T A C T A G C G T A C G T A

DPRX/MA1480.1/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AAGGGATTTTCA
--NGGATTATCT
C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T A C G T A C G T A G T C C G T A
A C G T A C G T T A C G T C A G C A T G G T C A A C G T A C G T C G T A C A G T A T G C A G C T