Information for 4-GAAATTCG (Motif 36)

A C T G C G T A C G T A C G T A A C G T A C G T A G T C A C T G
Reverse Opposite:
A G T C A C T G C G T A C G T A A C G T A C G T A C G T A G T C
p-value:1e-2
log p-value:-5.070e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif477.8
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets97.0 +/- 0.0bp
Average Position of motif in Background102.5 +/- 165.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0136.1_IRC900814_2/Jaspar

Match Rank:1
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---GAAATTCG-----
ATGGAAAGTCGTAAAA
A C G T A C G T A C G T A C T G C G T A C G T A C G T A A C G T A C G T A G T C A C T G A C G T A C G T A C G T A C G T A C G T
C T G A A G C T A C T G C T A G C T G A T C G A G T C A A C T G G A C T A G T C C A T G A C G T C T G A C G T A T C G A G C T A

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:2
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GAAATTCG-
GGAAATTCCC
A C G T A C T G C G T A C G T A C G T A A C G T A C G T A G T C A C T G A C G T
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GAAATTCG-
GGAAATTCCC
A C G T A C T G C G T A C G T A C G T A A C G T A C G T A G T C A C T G A C G T
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

PB0169.1_Sox15_2/Jaspar

Match Rank:4
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------GAAATTCG-
TTGAATGAAATTCGA
A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G T A A C G T A C G T A G T C A C T G A C G T
A C G T A C G T T C A G C T G A G T C A A G C T A C T G C G T A G T C A C T G A C A G T G A C T G A T C T A C G T C G A

PAX4/MA0068.2/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GAAATTCG
CTAATTAG
A C T G C G T A C G T A C G T A A C G T A C G T A G T C A C T G
A G T C C A G T C G T A G T C A A C G T C G A T G T C A T C A G

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:6
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----GAAATTCG
NACAGGAAAT---
A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G T A A C G T A C G T A G T C A C T G
T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T

PB0171.1_Sox18_2/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GAAATTCG----
NNNNTGAATTCANNNC
A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G T A A C G T A C G T A G T C A C T G A C G T A C G T A C G T A C G T
A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C

NFATC3/MA0625.1/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GAAATTCG
AATGGAAAAT--
A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G T A A C G T A C G T A G T C A C T G
C G T A C T G A G A C T T A C G C A T G T C G A C G T A G C T A C T G A G C A T A C G T A C G T

HOXD3/MA0912.2/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GAAATTCG
GTAATTAG
A C T G C G T A C G T A C G T A A C G T A C G T A G T C A C T G
T A C G A G C T G T C A C G T A A C G T A C G T C T G A T C A G

NFATC1/MA0624.1/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GAAATTCG
NNTGGAAANN--
A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G T A A C G T A C G T A G T C A C T G
C G T A C T G A G A C T C T A G A C T G C T G A C T G A G C T A C G T A G C A T A C G T A C G T