Information for 9-AGCACACGAT (Motif 19)

C G T A A C T G A G T C C G T A A G T C C G T A A G T C A C T G C G T A A C G T
Reverse Opposite:
C G T A A C G T A G T C A C T G A C G T A C T G A C G T A C T G A G T C A C G T
p-value:1e-9
log p-value:-2.140e+01
Information Content per bp:1.530
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets151.0 +/- 18.3bp
Average Position of motif in Background75.2 +/- 37.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---AGCACACGAT---
CGAAGCACACAAAATA
A C G T A C G T A C G T C G T A A C T G A G T C C G T A A G T C C G T A A G T C A C T G C G T A A C G T A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PB0044.1_Mtf1_1/Jaspar

Match Rank:2
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----AGCACACGAT--
NNTTTGCACACGGCCC
A C G T A C G T A C G T A C G T C G T A A C T G A G T C C G T A A G T C C G T A A G T C A C T G C G T A A C G T A C G T A C G T
C G A T G A C T C A G T A C G T G A C T A C T G G A T C C T G A A G T C G C T A G A T C A C T G C T A G G A T C T A G C G T A C

PB0130.1_Gm397_2/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---AGCACACGAT---
AGCGGCACACACGCAA
A C G T A C G T A C G T C G T A A C T G A G T C C G T A A G T C C G T A A G T C A C T G C G T A A C G T A C G T A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AGCACACGAT--
ATTTGCATACAATGG
A C G T A C G T A C G T C G T A A C T G A G T C C G T A A G T C C G T A A G T C A C T G C G T A A C G T A C G T A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGCACACGAT--
NHRTCACGACDN
C G T A A C T G A G T C C G T A A G T C C G T A A G T C A C T G C G T A A C G T A C G T A C G T
T C A G G C T A T C A G C A G T T G A C G T C A A G T C A T C G T G C A G T A C C A G T G A T C

ZSCAN4/MA1155.1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGCACACGAT-----
TGCACACACTGAAAA
C G T A A C T G A G T C C G T A A G T C C G T A A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G A C T T C A G A T G C C G T A A G T C C G T A G A T C T G C A G T A C A C G T A C T G C G T A G T C A C T G A C T G A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AGCACACGAT
CCAGGAACAG---
A C G T A C G T A C G T C G T A A C T G A G T C C G T A A G T C C G T A A G T C A C T G C G T A A C G T
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGCACACGAT-----
CTCACACAATGGCGC
C G T A A C T G A G T C C G T A A G T C C G T A A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

MTF1/MA0863.1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AGCACACGAT--
TTTGCACACGGCAC
A C G T A C G T C G T A A C T G A G T C C G T A A G T C C G T A A G T C A C T G C G T A A C G T A C G T A C G T
C A G T A C G T G A C T T C A G G T A C C G T A T A G C G T C A A G T C C A T G C A T G A G T C T G C A G A T C

MXI1/MA1108.2/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGCACACGAT
GACACATGGC
C G T A A C T G A G T C C G T A A G T C C G T A A G T C A C T G C G T A A C G T
C T A G T C G A G A T C C T G A A G T C C T G A A G C T C T A G A C T G A T G C