Information for 9-GCATCCCTCA (Motif 18)

A C T G A G T C C G T A A G C T A G T C A G T C A T G C A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A T C G A C T G A C T G C T G A A C G T A C T G A G T C
p-value:1e-6
log p-value:-1.530e+01
Information Content per bp:1.954
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif36.0
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets81.6 +/- 51.5bp
Average Position of motif in Background122.3 +/- 49.6bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)2.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GCATCCCTCA
YCATCMATCA
A C T G A G T C C G T A A G C T A G T C A G T C A T G C A C G T A G T C C G T A
G A T C G T A C C T G A A C G T G A T C G T C A C T G A A C G T G A T C G C T A

Znf281/MA1630.1/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GCATCCCTCA--
-CCTCCCCCACC
A C T G A G T C C G T A A G C T A G T C A G T C A T G C A C G T A G T C C G T A A C G T A C G T
A C G T A G T C G T A C C A G T T G A C T A G C A T G C A T G C A T G C T C G A A T G C G A T C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GCATCCCTCA-
GYCATCMATCAT
A C G T A C T G A G T C C G T A A G C T A G T C A G T C A T G C A C G T A G T C C G T A A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

TEAD3/MA0808.1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCATCCCTCA
ACATTCCA--
A C T G A G T C C G T A A G C T A G T C A G T C A T G C A C G T A G T C C G T A
C T G A T G A C C G T A A C G T C G A T A G T C A G T C C G T A A C G T A C G T

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCATCCCTCA
RCATTCCWGG
A C T G A G T C C G T A A G C T A G T C A G T C A T G C A C G T A G T C C G T A
C T A G T G A C C G T A C G A T C G A T A G T C G T A C C G T A A T C G A T C G

TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GCATCCCTCA
CYRCATTCCA--
A C G T A C G T A C T G A G T C C G T A A G C T A G T C A G T C A T G C A C G T A G T C C G T A
T G A C A G T C C T G A T G A C C G T A A C G T A C G T A G T C A G T C C G T A A C G T A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCATCCCTCA-------
TCACCCATCAATAAACA
A C T G A G T C C G T A A G C T A G T C A G T C A T G C A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

Wt1/MA1627.1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GCATCCCTCA---
CCCCTCCCCCACAC
A C G T A C T G A G T C C G T A A G C T A G T C A G T C A T G C A C G T A G T C C G T A A C G T A C G T A C G T
G A T C A G T C G T A C T A G C C A G T A T G C A G T C A G T C G T A C A T G C C T G A A T G C T G C A A G T C

MEIS1(var.2)/MA1639.1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GCATCCCTCA--
GTCATCAATCATT
A C G T A C T G A G T C C G T A A G C T A G T C A G T C A T G C A C G T A G T C C G T A A C G T A C G T
C T A G G A C T G A T C C T G A C A G T G T A C G T C A G C T A G C A T G T A C G C T A G C A T G C A T

PBX1/MA0070.1/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCATCCCTCA--
CCATCAATCAAA
A C T G A G T C C G T A A G C T A G T C A G T C A T G C A C G T A G T C C G T A A C G T A C G T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A