Information for 24-VACATAKTATGR (Motif 36)

T A C G G C T A G A T C C G T A C G A T C G T A A C T G G A C T C G T A C G A T A C T G C T A G
Reverse Opposite:
G A T C A G T C C G T A C G A T C T G A T G A C G C A T G C T A A C G T C A T G C A G T A T G C
p-value:1e-3
log p-value:-7.210e+00
Information Content per bp:1.622
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif21.43%
Number of Background Sequences with motif803.9
Percentage of Background Sequences with motif1.31%
Average Position of motif in Targets114.7 +/- 14.8bp
Average Position of motif in Background96.8 +/- 75.6bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:VACATAKTATGR----
-CCATTGTATGCAAAT
T A C G G C T A G A T C C G T A C G A T C G T A A C T G G A C T C G T A C G A T A C T G C T A G A C G T A C G T A C G T A C G T
A C G T A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

ZKSCAN1/MA1585.1/Jaspar

Match Rank:2
Score:0.59
Offset:3
Orientation:forward strand
Alignment:VACATAKTATGR-
---ATAGTAGGTG
T A C G G C T A G A T C C G T A C G A T C G T A A C T G G A C T C G T A C G A T A C T G C T A G A C G T
A C G T A C G T A C G T T C G A A G C T T G C A C T A G A C G T G T C A A T C G C A T G A G C T T A C G

SOX2/MA0143.4/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-VACATAKTATGR
NNCCATTGTNN--
A C G T T A C G G C T A G A T C C G T A C G A T C G T A A C T G G A C T C G T A C G A T A C T G C T A G
C G A T G C A T G A T C G A T C G C T A A G C T C G A T C T A G C G A T G C A T G C A T A C G T A C G T

ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-VACATAKTATGR--
GCACAYAGTAGGKCY
A C G T T A C G G C T A G A T C C G T A C G A T C G T A A C T G G A C T C G T A C G A T A C T G C T A G A C G T A C G T
C T A G G A T C T C G A A T G C T C G A A G C T C T G A A C T G A C G T C T G A A C T G A C T G A C G T A G T C G A T C

SOX13/MA1120.1/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-VACATAKTATGR
NNCCATTGTNN--
A C G T T A C G G C T A G A T C C G T A C G A T C G T A A C T G G A C T C G T A C G A T A C T G C T A G
C G A T A C T G A G T C G A T C C G T A G A C T C G A T T C A G G A C T A G C T G A C T A C G T A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-VACATAKTATGR----
ANTAATTTTATGGCCGN
A C G T T A C G G C T A G A T C C G T A C G A T C G T A A C T G G A C T C G T A C G A T A C T G C T A G A C G T A C G T A C G T A C G T
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T

SOX14/MA1562.1/Jaspar

Match Rank:7
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:VACATAKTATGR
--CATTGTTCGG
T A C G G C T A G A T C C G T A C G A T C G T A A C T G G A C T C G T A C G A T A C T G C T A G
A C G T A C G T G T A C T G C A C A G T A C G T T C A G C G A T G C A T G T A C C T A G A C T G

Dmrt1/MA1603.1/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--VACATAKTATGR
GATACAAAGTATC-
A C G T A C G T T A C G G C T A G A T C C G T A C G A T C G T A A C T G G A C T C G T A C G A T A C T G C T A G
C T A G G C T A G C A T C G T A G A T C G C T A G C T A C G T A C T A G C G A T C G T A C G A T G T A C A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:9
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:VACATAKTATGR-
---NTTTTATGAC
T A C G G C T A G A T C C G T A C G A T C G T A A C T G G A C T C G T A C G A T A C T G C T A G A C G T
A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:VACATAKTATGR
-CCATTGTTYB-
T A C G G C T A G A T C C G T A C G A T C G T A A C T G G A C T C G T A C G A T A C T G C T A G
A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T