Information for 19-CCATCATATA (Motif 28)

A G T C A G T C C G T A A C G T A G T C C G T A A C G T C G T A A C G T C G T A
Reverse Opposite:
A C G T C G T A A C G T C G T A A C G T A C T G C G T A A C G T A C T G A C T G
p-value:1e-2
log p-value:-6.646e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif77.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets8.0 +/- 0.0bp
Average Position of motif in Background112.0 +/- 124.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0134.1_Pbx1/Jaspar

Match Rank:1
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CCATCATATA---
TCACCCATCAATAAACA
A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A G T C C G T A A C G T C G T A A C G T C G T A A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

PB0098.1_Zfp410_1/Jaspar

Match Rank:2
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CCATCATATA---
NNNTCCATCCCATAANN
A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A G T C C G T A A C G T C G T A A C G T C G T A A C G T A C G T A C G T
A C G T G C A T G T C A A C G T T G A C G A T C G C T A A G C T G A T C G A T C G A T C C G T A C A G T G C T A G T C A A G C T G C T A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:3
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CCATCATATA
GYCATCMATCAT---
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A G T C C G T A A C G T C G T A A C G T C G T A
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T A C G T

PB0176.1_Sox5_2/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CCATCATATA---
TATCATAATTAAGGA
A C G T A C G T A G T C A G T C C G T A A C G T A G T C C G T A A C G T C G T A A C G T C G T A A C G T A C G T A C G T
C G A T G C T A C G A T A G T C C T G A C A G T T G C A G C T A G C A T G A C T C G T A T G C A T A C G C A T G C G T A

OLIG2/MA0678.1/Jaspar

Match Rank:5
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CCATCATATA--
--ACCATATGGT
A G T C A G T C C G T A A C G T A G T C C G T A A C G T C G T A A C G T C G T A A C G T A C G T
A C G T A C G T C T G A T G A C T G A C C T G A A C G T T G C A G A C T C A T G A C T G G A C T

OLIG1/MA0826.1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CCATCATATA--
--AACATATGTT
A G T C A G T C C G T A A C G T A G T C C G T A A C G T C G T A A C G T C G T A A C G T A C G T
A C G T A C G T T C G A T G C A G T A C C T G A A C G T T G C A G C A T A C T G A C G T G A C T

OLIG3/MA0827.1/Jaspar

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CCATCATATA--
--ACCATATGTT
A G T C A G T C C G T A A C G T A G T C C G T A A C G T C G T A A C G T C G T A A C G T A C G T
A C G T A C G T T C G A T G A C G T A C C T G A A C G T T G C A G A C T A C T G A C G T G A C T

Dux/MA0611.1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCATCATATA
CCAATCAA---
A C G T A G T C A G T C C G T A A C G T A G T C C G T A A C G T C G T A A C G T C G T A
A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T

BHLHE22/MA0818.1/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CCATCATATA--
--ACCATATGTT
A G T C A G T C C G T A A C G T A G T C C G T A A C G T C G T A A C G T C G T A A C G T A C G T
A C G T A C G T T C G A T G A C G T A C C T G A A G C T G T C A G A C T A C T G A G C T G A C T

ZNF410/MA0752.1/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCATCATATA------
TCCATCCCATAATACTC
A C G T A G T C A G T C C G T A A C G T A G T C C G T A A C G T C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T G A C G A T C G C T A C A G T G T A C G T A C A T G C G T C A A G C T G T C A T C G A G A C T C T G A G T A C A G C T G T A C