Information for 9-CTTCAACTAGGC (Motif 10)

A G T C A C G T A C G T A G T C C G T A C G T A A G T C A C G T C G T A A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C A C G T C G T A A C T G A C G T A C G T A C T G C G T A C G T A A C T G
p-value:1e-4
log p-value:-1.073e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets195.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HMBOX1/MA0895.1/Jaspar

Match Rank:1
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CTTCAACTAGGC
-GTTAACTAGN-
A G T C A C G T A C G T A G T C C G T A C G T A A G T C A C G T C G T A A C T G A C T G A G T C
A C G T A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T A C G T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTTCAACTAGGC
CCAAAAATAG--
A G T C A C G T A C G T A G T C C G T A C G T A A G T C A C G T C G T A A C T G A C T G A G T C
G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:CTTCAACTAGGC--
------CTAGGCCT
A G T C A C G T A C G T A G T C C G T A C G T A A G T C A C G T C G T A A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T

PH0040.1_Hmbox1/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CTTCAACTAGGC---
GANGTTAACTAGTTTNN
A C G T A C G T A G T C A C G T A C G T A G T C C G T A C G T A A G T C A C G T C G T A A C T G A C T G A G T C A C G T A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

PH0168.1_Hnf1b/Jaspar

Match Rank:5
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CTTCAACTAGGC--
AGCTGTTAACTAGCCGT
A C G T A C G T A C G T A G T C A C G T A C G T A G T C C G T A C G T A A G T C A C G T C G T A A C T G A C T G A G T C A C G T A C G T
C G T A A C T G A G T C A C G T C T A G G C A T G A C T C G T A G C T A A G T C A G C T C G T A T C A G A G T C G A T C A T C G A G C T

NR6A1/MA1541.1/Jaspar

Match Rank:6
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----CTTCAACTAGGC
NTGACCTTGAACTTGAN
A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A G T C C G T A C G T A A G T C A C G T C G T A A C T G A C T G A G T C
G C A T G A C T T C A G T G C A G T A C G T A C C A G T G C A T T C A G T C G A G T C A G T A C A C G T G A C T T A C G T C G A T G A C

POL008.1_DCE_S_I/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CTTCAACTAGGC
GCTTCC-------
A C G T A G T C A C G T A C G T A G T C C G T A C G T A A G T C A C G T C G T A A C T G A C T G A G T C
A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:8
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----CTTCAACTAGGC
TGACCTTGACCT----
A C G T A C G T A C G T A C G T A G T C A C G T A C G T A G T C C G T A C G T A A G T C A C G T C G T A A C T G A C T G A G T C
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T A C G T

LBX1/MA0618.1/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CTTCAACTAGGC
--TTAATTAG--
A G T C A C G T A C G T A G T C C G T A C G T A A G T C A C G T C G T A A C T G A C T G A G T C
A C G T A C G T C G A T A G C T C G T A C G T A A G C T C G A T C T G A A T C G A C G T A C G T

TLX2/MA1577.1/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CTTCAACTAGGC
--CTAATTAG--
A G T C A C G T A C G T A G T C C G T A C G T A A G T C A C G T C G T A A C T G A C T G A G T C
A C G T A C G T A G T C G A C T C T G A C G T A A C G T A C G T C G T A T C A G A C G T A C G T