Information for 2-YCRKGTTRGRCT (Motif 2)

A G C T A G T C C T A G C A G T C T A G A C G T A C G T C T A G A C T G C T A G A G T C A C G T
Reverse Opposite:
C G T A A C T G A G T C A G T C A G T C C G T A C G T A A G T C G T A C A G T C A C T G C T G A
p-value:1e-7
log p-value:-1.744e+01
Information Content per bp:1.832
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif37.50%
Number of Background Sequences with motif76.0
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets147.3 +/- 29.9bp
Average Position of motif in Background117.9 +/- 77.9bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF449/MA1656.1/Jaspar

Match Rank:1
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:YCRKGTTRGRCT---
-NNGGTTGGGCTTNN
A G C T A G T C C T A G C A G T C T A G A C G T A C G T C T A G A C T G C T A G A G T C A C G T A C G T A C G T A C G T
A C G T A T G C C A G T C A T G A C T G G A C T C G A T C A T G A C T G A T C G A G T C C G A T A C G T A C T G C A T G

PB0134.1_Hnf4a_2/Jaspar

Match Rank:2
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:YCRKGTTRGRCT------
--NNATTGGACTTTNGNN
A G C T A G T C C T A G C A G T C T A G A C G T A C G T C T A G A C T G C T A G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C

SIX1/MA1118.1/Jaspar

Match Rank:3
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--YCRKGTTRGRCT
TATCAGGTTAC---
A C G T A C G T A G C T A G T C C T A G C A G T C T A G A C G T A C G T C T A G A C T G C T A G A G T C A C G T
C A G T T G C A G C A T G A T C C G T A C A T G C T A G G C A T C G A T G C T A G T A C A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.52
Offset:6
Orientation:forward strand
Alignment:YCRKGTTRGRCT--
------TWGTCTGV
A G C T A G T C C T A G C A G T C T A G A C G T A C G T C T A G A C T G C T A G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:5
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-YCRKGTTRGRCT--
GTCATGCHTGRCTGS
A C G T A G C T A G T C C T A G C A G T C T A G A C G T A C G T C T A G A C T G C T A G A G T C A C G T A C G T A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

HNF4A/MA0114.4/Jaspar

Match Rank:6
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:YCRKGTTRGRCT-----
----NNTGGACTTTGNN
A G C T A G T C C T A G C A G T C T A G A C G T A C G T C T A G A C T G C T A G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G A C T G C A T C T A G C T A G G T C A T G A C G A C T A G C T A C G T C T A G C T A G G T C A

HNF4G/MA0484.2/Jaspar

Match Rank:7
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:YCRKGTTRGRCT-----
----NNTGGACTTTGNN
A G C T A G T C C T A G C A G T C T A G A C G T A C G T C T A G A C T G C T A G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T A G T C G C A T C T A G C T A G G T C A T G A C G A C T A G C T A G C T C T A G T C A G G T C A

PB0121.1_Foxj3_2/Jaspar

Match Rank:8
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--YCRKGTTRGRCT---
NNCTTTGTTTTGNTNNN
A C G T A C G T A G C T A G T C C T A G C A G T C T A G A C G T A C G T C T A G A C T G C T A G A G T C A C G T A C G T A C G T A C G T
G C A T A T G C G T A C C G A T G C A T C G A T C T A G C G A T C A G T C G A T A C G T C T A G C A T G G A C T T A C G G C A T A C G T

RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer

Match Rank:9
Score:0.51
Offset:5
Orientation:forward strand
Alignment:YCRKGTTRGRCT---
-----TTGAMCTTTG
A G C T A G T C C T A G C A G T C T A G A C G T A C G T C T A G A C T G C T A G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T A G C T C A T G C T G A G T A C A G T C A G C T A G C T C A G T C T A G

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--YCRKGTTRGRCT--
NGTCACGCTTGGCTGC
A C G T A C G T A G C T A G T C C T A G C A G T C T A G A C G T A C G T C T A G A C T G C T A G A G T C A C G T A C G T A C G T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C