Information for 1-AAGCMTGATGTA (Motif 1)

C G T A C G T A A C T G G T A C G T A C A C G T C T A G C T G A A C G T C T A G G A C T C G T A
Reverse Opposite:
A C G T C G T A A G T C G T C A A G C T G A T C C G T A C A G T A C T G A G T C G A C T A C G T
p-value:1e-7
log p-value:-1.639e+01
Information Content per bp:1.686
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif40.00%
Number of Background Sequences with motif392.9
Percentage of Background Sequences with motif0.44%
Average Position of motif in Targets100.5 +/- 59.9bp
Average Position of motif in Background105.3 +/- 86.1bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:AAGCMTGATGTA
AAGCTTG-----
C G T A C G T A A C T G G T A C G T A C A C G T C T A G C T G A A C G T C T A G G A C T C G T A
C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T A C G T A C G T A C G T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AAGCMTGATGTA-
WYATGCATWATGCAT
A C G T A C G T C G T A C G T A A C T G G T A C G T A C A C G T C T A G C T G A A C G T C T A G G A C T C G T A A C G T
C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AAGCMTGATGTA
AGGCCTNG----
C G T A C G T A A C T G G T A C G T A C A C G T C T A G C T G A A C G T C T A G G A C T C G T A
C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:4
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----AAGCMTGATGTA
AAAATATGCATAATAAA
A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G G T A C G T A C A C G T C T A G C T G A A C G T C T A G G A C T C G T A
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

MEIS1(var.2)/MA1639.1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AAGCMTGATGTA
NNTGATTGATGNN
A C G T C G T A C G T A A C T G G T A C G T A C A C G T C T A G C T G A A C G T C T A G G A C T C G T A
C G T A C G T A C G A T C A T G C G T A C G A T C A G T C A T G G T C A G A C T C T A G C T G A G A T C

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AAGCMTGATGTA
ATGCATAATTCA
C G T A C G T A A C T G G T A C G T A C A C G T C T A G C T G A A C G T C T A G G A C T C G T A
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AAGCMTGATGTA---
ATGAATWATTCATGA
C G T A C G T A A C T G G T A C G T A C A C G T C T A G C T G A A C G T C T A G G A C T C G T A A C G T A C G T A C G T
G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A

PAX6/MA0069.1/Jaspar

Match Rank:8
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----AAGCMTGATGTA
AANTCATGCGTGAA---
A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G G T A C G T A C A C G T C T A G C T G A A C G T C T A G G A C T C G T A
G T C A T C G A A G T C G A C T A T G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A T C G A A C G T A C G T A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AAGCMTGATGTA---
NNNNNATTGATGNGTGN
A C G T A C G T C G T A C G T A A C T G G T A C G T A C A C G T C T A G C T G A A C G T C T A G G A C T C G T A A C G T A C G T A C G T
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

PBX1/MA0070.1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AAGCMTGATGTA
TTTGATTGATGN-
A C G T C G T A C G T A A C T G G T A C G T A C A C G T C T A G C T G A A C G T C T A G G A C T C G T A
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G A C G T