Information for 2-GGBAGCCAABCT (Motif 2)

A C T G A T C G A G T C C G T A A T C G A T G C A G T C C G T A C T G A A C T G A G T C A G C T
Reverse Opposite:
C T G A A C T G T A G C A G C T A C G T C T A G A T C G A T G C A C G T T A C G A T G C A G T C
p-value:1e-6
log p-value:-1.438e+01
Information Content per bp:1.741
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif26.67%
Number of Background Sequences with motif274.4
Percentage of Background Sequences with motif0.46%
Average Position of motif in Targets85.8 +/- 17.7bp
Average Position of motif in Background97.0 +/- 71.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0139.1_Pitx3/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GGBAGCCAABCT----
GNNAGCTAATCCCCCN
A C T G A T C G A G T C C G T A A T C G A T G C A G T C C G T A C T G A A C T G A G T C A G C T A C G T A C G T A C G T A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GGBAGCCAABCT----
-SCAGYCADGCATGAC
A C T G A T C G A G T C C G T A A T C G A T G C A G T C C G T A C T G A A C T G A G T C A G C T A C G T A C G T A C G T A C G T
A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

ZFP42/MA1651.1/Jaspar

Match Rank:3
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GGBAGCCAABCT-----
NNNNGGCAGCCATTTTGNNNN
A C G T A C G T A C G T A C G T A C T G A T C G A G T C C G T A A T C G A T G C A G T C C G T A C T G A A C T G A G T C A G C T A C G T A C G T A C G T A C G T A C G T
A G T C T A C G T A C G C T G A T C A G C T A G T A G C T G C A C A T G T G A C A G T C T C G A G A C T A G C T G C A T G A C T C A T G C A T G C G T A C G T A T A G C

Nr2e3/MA0164.1/Jaspar

Match Rank:4
Score:0.55
Offset:6
Orientation:forward strand
Alignment:GGBAGCCAABCT-
------CAAGCTT
A C T G A T C G A G T C C G T A A T C G A T G C A G T C C G T A C T G A A C T G A G T C A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:5
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GGBAGCCAABCT
----GCTAATCC
A C T G A T C G A G T C C G T A A T C G A T G C A G T C C G T A C T G A A C T G A G T C A G C T
A C G T A C G T A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GGBAGCCAABCT
CTGGCAGNCTGCCA
A C G T A C G T A C T G A T C G A G T C C G T A A T C G A T G C A G T C C G T A C T G A A C T G A G T C A G C T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GGBAGCCAABCT
-CGTGCCAAG--
A C T G A T C G A G T C C G T A A T C G A T G C A G T C C G T A C T G A A C T G A G T C A G C T
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GGBAGCCAABCT
-BCAGACWA---
A C T G A T C G A G T C C G T A A T C G A T G C A G T C C G T A C T G A A C T G A G T C A G C T
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

PH0026.1_Duxbl/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GGBAGCCAABCT------
-CGACCCAATCAACGGTG
A C T G A T C G A G T C C G T A A T C G A T G C A G T C C G T A C T G A A C T G A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

GATA1/MA0035.4/Jaspar

Match Rank:10
Score:0.52
Offset:3
Orientation:forward strand
Alignment:GGBAGCCAABCT--
---TTCTAATCTAT
A C T G A T C G A G T C C G T A A T C G A T G C A G T C C G T A C T G A A C T G A G T C A G C T A C G T A C G T
A C G T A C G T A C G T C G A T G C A T G T A C C G A T C G T A G C T A G C A T G T A C G C A T C G T A G C A T