Information for 10-YRCAGACCTTSA (Motif 10)

A G T C C T G A A G T C C G T A A C T G C G T A A T G C G T A C A C G T A G C T A T G C C G T A
Reverse Opposite:
C G A T A T C G C T G A C G T A C A T G A T C G C G A T A G T C A C G T A C T G A G C T C T A G
p-value:1e-10
log p-value:-2.450e+01
Information Content per bp:1.771
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets125.3 +/- 15.4bp
Average Position of motif in Background84.1 +/- 55.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:YRCAGACCTTSA
-CCAGACRSVB-
A G T C C T G A A G T C C G T A A C T G C G T A A T G C G T A C A C G T A G C T A T G C C G T A
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:YRCAGACCTTSA----
-GCTGACCTTGAACTN
A G T C C T G A A G T C C G T A A C T G C G T A A T G C G T A C A C G T A G C T A T G C C G T A A C G T A C G T A C G T A C G T
A C G T T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:3
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:YRCAGACCTTSA-
---TGACCTTGAN
A G T C C T G A A G T C C G T A A C T G C G T A A T G C G T A C A C G T A G C T A T G C C G T A A C G T
A C G T A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:YRCAGACCTTSA
CACAGN------
A G T C C T G A A G T C C G T A A C T G C G T A A T G C G T A C A C G T A G C T A T G C C G T A
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:YRCAGACCTTSA
-GCAGTGATTT-
A G T C C T G A A G T C C G T A A C T G C G T A A T G C G T A C A C G T A G C T A T G C C G T A
A C G T C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:YRCAGACCTTSA-
---TGACCTTGAV
A G T C C T G A A G T C C G T A A C T G C G T A A T G C G T A C A C G T A G C T A T G C C G T A A C G T
A C G T A C G T A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:YRCAGACCTTSA
-CCAGACAG---
A G T C C T G A A G T C C G T A A C T G C G T A A T G C G T A C A C G T A G C T A T G C C G T A
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:YRCAGACCTTSA
--ATGACCTTGA
A G T C C T G A A G T C C G T A A C T G C G T A A T G C G T A C A C G T A G C T A T G C C G T A
A C G T A C G T C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:YRCAGACCTTSA
--NTGACCTTGA
A G T C C T G A A G T C C G T A A C T G C G T A A T G C G T A C A C G T A G C T A T G C C G T A
A C G T A C G T C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A

NR5A1/MA1540.1/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:YRCAGACCTTSA-
--NTGACCTTGAN
A G T C C T G A A G T C C G T A A C T G C G T A A T G C G T A C A C G T A G C T A T G C C G T A A C G T
A C G T A C G T C T A G G A C T T C A G C T G A A G T C G T A C G C A T G A C T T A C G C T G A T G A C