Information for 7-AGCAATCATATA (Motif 7)

C G T A A C T G A G T C C G T A C G T A A C G T G T A C C G T A A C G T C G T A A G C T C G T A
Reverse Opposite:
A C G T C T G A C G A T C G T A C G A T A C T G G T C A A C G T C G A T A C T G G T A C A C G T
p-value:1e-5
log p-value:-1.222e+01
Information Content per bp:1.837
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif15.00%
Number of Background Sequences with motif79.7
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets117.2 +/- 51.7bp
Average Position of motif in Background92.9 +/- 64.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1/MA0070.1/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--AGCAATCATATA
CCATCAATCAAA--
A C G T A C G T C G T A A C T G A G T C C G T A C G T A A C G T G T A C C G T A A C G T C G T A A G C T C G T A
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:2
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---AGCAATCATATA
GYCATCMATCAT---
A C G T A C G T A C G T C G T A A C T G A G T C C G T A C G T A A C G T G T A C C G T A A C G T C G T A A G C T C G T A
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T A C G T

MEIS1(var.2)/MA1639.1/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---AGCAATCATATA
GTCATCAATCATT--
A C G T A C G T A C G T C G T A A C T G A G T C C G T A C G T A A C G T G T A C C G T A A C G T C G T A A G C T C G T A
C T A G G A C T G A T C C T G A C A G T G T A C G T C A G C T A G C A T G T A C G C T A G C A T G C A T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:4
Score:0.66
Offset:1
Orientation:forward strand
Alignment:AGCAATCATATA
-CCAATCAA---
C G T A A C T G A G T C C G T A C G T A A C G T G T A C C G T A A C G T C G T A A G C T C G T A
A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T

PB0144.1_Lef1_2/Jaspar

Match Rank:5
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----AGCAATCATATA
GAAGATCAATCACTTA
A C G T A C G T A C G T A C G T C G T A A C T G A G T C C G T A C G T A A C G T G T A C C G T A A C G T C G T A A G C T C G T A
T A C G C G T A T C G A T A C G G C T A C G A T A G T C C G T A C T G A C A G T G A T C C T G A G T A C A G C T G C A T C G T A

PH0037.1_Hdx/Jaspar

Match Rank:6
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----AGCAATCATATA-
AAGGCGAAATCATCGCA
A C G T A C G T A C G T A C G T C G T A A C T G A G T C C G T A C G T A A C G T G T A C C G T A A C G T C G T A A G C T C G T A A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AGCAATCATATA
YCATCMATCA----
A C G T A C G T C G T A A C T G A G T C C G T A C G T A A C G T G T A C C G T A A C G T C G T A A G C T C G T A
G A T C G T A C C T G A A C G T G A T C G T C A C T G A A C G T G A T C G C T A A C G T A C G T A C G T A C G T

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:8
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----AGCAATCATATA
GAAGATCAATCACTAA
A C G T A C G T A C G T A C G T C G T A A C T G A G T C C G T A C G T A A C G T G T A C C G T A A C G T C G T A A G C T C G T A
T A C G C T A G T C G A T A C G G C T A G C A T A G T C C G T A C T G A C A G T G A T C C T G A A T G C A C G T G C T A C G T A

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGCAATCATATA
TCATCAATCA----
A C G T A C G T C G T A A C T G A G T C C G T A C G T A A C G T G T A C C G T A A C G T C G T A A G C T C G T A
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T A C G T A C G T A C G T

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:10
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---AGCAATCATATA
NCYATMAATCAY---
A C G T A C G T A C G T C G T A A C T G A G T C C G T A C G T A A C G T G T A C C G T A A C G T C G T A A G C T C G T A
T A C G G A T C G A T C C T G A A G C T G T C A G C T A T C G A C G A T G A T C G C T A G A C T A C G T A C G T A C G T