Information for 18-AAACCCTAAA (Motif 27)

T C G A T C G A G T C A T A G C G T A C G A T C G A C T T C G A C T G A C T G A
Reverse Opposite:
A G C T G A C T A G C T C T G A C T A G C A T G A T C G C A G T A G C T A G C T
p-value:1e-6
log p-value:-1.540e+01
Information Content per bp:1.705
Number of Target Sequences with motif65.0
Percentage of Target Sequences with motif7.89%
Number of Background Sequences with motif1905.5
Percentage of Background Sequences with motif3.96%
Average Position of motif in Targets102.4 +/- 54.3bp
Average Position of motif in Background99.9 +/- 56.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.41
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MZF1/MA0056.2/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AAACCCTAAA-
CAAATCCCCACTT
A C G T A C G T T C G A T C G A G T C A T A G C G T A C G A T C G A C T T C G A C T G A C T G A A C G T
G T A C G C T A T G C A T G C A C G A T T A G C G T A C G A T C G A T C G C T A G A T C G C A T A G C T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:2
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AAACCCTAAA---
-NGYCATAAAWCH
T C G A T C G A G T C A T A G C G T A C G A T C G A C T T C G A C T G A C T G A A C G T A C G T A C G T
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AAACCCTAAA-
-VGCCATAAAA
T C G A T C G A G T C A T A G C G T A C G A T C G A C T T C G A C T G A C T G A A C G T
A C G T T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A

PH0064.1_Hoxb9/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AAACCCTAAA-----
AGAGCCATAAAATTCG
A C G T T C G A T C G A G T C A T A G C G T A C G A T C G A C T T C G A C T G A C T G A A C G T A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

NKX2-5/MA0063.2/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AAACCCTAAA--
-ACCACTCAAAA
T C G A T C G A G T C A T A G C G T A C G A T C G A C T T C G A C T G A C T G A A C G T A C G T
A C G T T C G A T G A C G A T C C T G A G A T C G C A T G A T C C G T A G C T A T C G A G C T A

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AAACCCTAAA
TAATCCCN---
A C G T T C G A T C G A G T C A T A G C G T A C G A T C G A C T T C G A C T G A C T G A
C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T A C G T A C G T

Nkx3-2/MA0122.3/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AAACCCTAAA-
ATAACCACTTAAA
A C G T A C G T T C G A T C G A G T C A T A G C G T A C G A T C G A C T T C G A C T G A C T G A A C G T
C G T A C G A T C G T A C G T A T G A C G A T C G C T A G T A C G C A T G A C T G C T A C G T A G C T A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AAACCCTAAA
AASCACTCAA
T C G A T C G A G T C A T A G C G T A C G A T C G A C T T C G A C T G A C T G A
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

PH0130.1_Otx2/Jaspar

Match Rank:9
Score:0.58
Offset:-7
Orientation:reverse strand
Alignment:-------AAACCCTAAA
GANNATTAATCCCTNNN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A G T C A T A G C G T A C G A T C G A C T T C G A C T G A C T G A
C A T G G T C A G A T C C T G A T C G A G A C T C G A T C G T A C G T A C A G T G A T C A G T C A G T C A G C T G C T A G A T C G T C A

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AAACCCTAAA-
AGCCACTCAAG
T C G A T C G A G T C A T A G C G T A C G A T C G A C T T C G A C T G A C T G A A C G T
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G