Homer de novo Motif Results (motif_results/SRR12081063//)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 832
Total background sequences = 47730
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 C G T A A G T C A C G T A G C T A C G T C G T A C T G A C T A G A C T G A C G T C G T A A C G T 1e-16-3.782e+011.20%0.01%42.5bp (44.0bp)PH0088.1_Isl2/Jaspar(0.558)
More Information | Similar Motifs Found
motif file (matrix)
2 C G T A G T A C C G T A C G T A A C T G A C G T A C T G C G T A A C G T A C T G C A T G C G T A 1e-16-3.691e+010.84%0.00%54.9bp (0.0bp)HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer(0.642)
More Information | Similar Motifs Found
motif file (matrix)
3 A G T C A G T C A T G C A C G T C T G A G A T C A G C T C G A T A C G T A G T C A C G T A G T C 1e-13-3.090e+010.72%0.00%35.4bp (0.0bp)PRDM1/MA0508.3/Jaspar(0.717)
More Information | Similar Motifs Found
motif file (matrix)
4 * C G A T C G T A C G T A G T A C G T A C A G T C A G T C G T A C A C G T C T G A C G T A G T A C 1e-11-2.654e+011.44%0.08%35.4bp (56.6bp)PH0121.1_Obox1/Jaspar(0.637)
More Information | Similar Motifs Found
motif file (matrix)
5 * G T A C G T C A G T A C C G A T A C G T C T G A A G C T G T C A 1e-11-2.564e+0112.39%6.04%59.5bp (63.8bp)Nkx3-2/MA0122.3/Jaspar(0.836)
More Information | Similar Motifs Found
motif file (matrix)
6 * C T G A A C G T A T C G C A T G C T G A A C T G C G T A A C T G C T G A A T C G 1e-10-2.482e+015.05%1.48%40.8bp (63.2bp)Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer(0.660)
More Information | Similar Motifs Found
motif file (matrix)
7 * C G T A A T G C G T C A A G C T G T C A C G T A C G T A C G T A C T G A A G T C A G T C A C G T 1e-10-2.476e+010.96%0.02%54.3bp (43.6bp)Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer(0.659)
More Information | Similar Motifs Found
motif file (matrix)
8 * A C G T G T C A A G T C A G T C A G T C C G T A A C T G A C G T A C G T A G T C C G T A A G T C 1e-10-2.444e+010.84%0.01%55.4bp (62.1bp)NR1I3/MA1534.1/Jaspar(0.673)
More Information | Similar Motifs Found
motif file (matrix)
9 * A G T C A G T C C G A T A G T C A G T C A C G T A C T G G T C A C G T A A G T C A C G T A G T C 1e-10-2.434e+010.72%0.01%49.0bp (42.9bp)E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer(0.685)
More Information | Similar Motifs Found
motif file (matrix)
10 * T A C G A G T C A C G T A C G T C T G A A C G T G T A C A C G T A C T G C A G T 1e-10-2.399e+012.89%0.52%56.3bp (55.6bp)Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer(0.842)
More Information | Similar Motifs Found
motif file (matrix)
11 * A G T C G A T C A C T G A C G T A C G T T C A G A G C T A G T C G C A T A G T C A C G T C T G A 1e-10-2.308e+011.08%0.04%60.7bp (65.3bp)Sox3/MA0514.1/Jaspar(0.672)
More Information | Similar Motifs Found
motif file (matrix)
12 * A G T C A C G T A G T C A G T C A G T C C G T A G T C A A C G T A C G T A G T C C G T A A C T G 1e-9-2.263e+010.72%0.01%22.3bp (54.1bp)PB0201.1_Zfp281_2/Jaspar(0.568)
More Information | Similar Motifs Found
motif file (matrix)
13 * C A T G C T A G C A G T C T A G T A C G C G A T A G C T C T G A A C T G C G A T 1e-9-2.253e+015.05%1.60%50.1bp (62.9bp)RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer(0.675)
More Information | Similar Motifs Found
motif file (matrix)
14 * C A G T A C T G C T A G T C A G A G T C G T C A A C G T A T C G C G T A C T A G 1e-9-2.101e+013.01%0.66%58.8bp (62.2bp)HIC2/MA0738.1/Jaspar(0.728)
More Information | Similar Motifs Found
motif file (matrix)
15 * A G C T C A G T A G T C C G T A C T A G A C G T C A G T A C G T G C T A C G A T A C G T A C G T 1e-8-2.070e+011.68%0.19%47.5bp (56.8bp)Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer(0.669)
More Information | Similar Motifs Found
motif file (matrix)
16 * A C G T A G T C G T C A A C T G A C G T C G T A A G T C C G T A C G T A A C T G 1e-8-2.027e+010.84%0.02%54.4bp (30.4bp)RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer(0.581)
More Information | Similar Motifs Found
motif file (matrix)
17 * C T G A A C T G A G T C A G T C A C G T C T G A C G A T A C T G A G T C C G T A A C T G A G T C 1e-8-2.023e+010.72%0.01%48.1bp (59.4bp)POL010.1_DCE_S_III/Jaspar(0.567)
More Information | Similar Motifs Found
motif file (matrix)
18 * A C G T A C T G A C G T A C G T A C T G A G T C A G T C A G C T A C G T A C G T 1e-8-1.944e+011.56%0.17%57.4bp (55.5bp)Nr2e1/MA0676.1/Jaspar(0.676)
More Information | Similar Motifs Found
motif file (matrix)
19 * C G T A C G T A C T G A A G T C C G A T A T G C A G T C T G C A A G T C A G T C 1e-8-1.927e+012.77%0.61%60.4bp (59.5bp)POL003.1_GC-box/Jaspar(0.653)
More Information | Similar Motifs Found
motif file (matrix)
20 * C G A T G A T C A G C T C G A T G T A C A C G T G T C A G C A T C A G T G T A C 1e-8-1.910e+015.54%2.09%56.9bp (57.2bp)POL008.1_DCE_S_I/Jaspar(0.612)
More Information | Similar Motifs Found
motif file (matrix)
21 * A C T G A G T C A G C T A G T C G T A C A C G T C G T A A C G T A C G T C T G A A C G T C G T A 1e-8-1.863e+010.84%0.03%51.4bp (41.6bp)POL013.1_MED-1/Jaspar(0.635)
More Information | Similar Motifs Found
motif file (matrix)
22 * C G T A G A T C C G T A A T G C C G T A G A T C C G T A A C G T C T G A G T A C G T C A A G T C 1e-7-1.780e+016.02%2.48%52.9bp (64.9bp)PB0198.1_Zfp128_2/Jaspar(0.653)
More Information | Similar Motifs Found
motif file (matrix)
23 * A C T G A G T C C G T A A G T C A C T G C G A T A C G T A C G T C G T A A C G T 1e-7-1.707e+010.60%0.01%46.5bp (51.9bp)HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer(0.727)
More Information | Similar Motifs Found
motif file (matrix)
24 * A G C T A C G T A G T C G T C A A C G T G T C A T C A G T G C A G T C A C G T A 1e-7-1.699e+0110.35%5.57%54.8bp (57.5bp)PB0006.1_Bcl6b_1/Jaspar(0.778)
More Information | Similar Motifs Found
motif file (matrix)
25 * T A C G A C G T G T C A C G T A C G T A C G T A A C T G A C G T A C G T A C G T A C G T C G T A 1e-7-1.643e+011.20%0.12%45.8bp (45.4bp)BARX2/MA1471.1/Jaspar(0.631)
More Information | Similar Motifs Found
motif file (matrix)
26 * T G C A C G A T C A T G T A C G G T C A C T G A A C G T A G T C G C T A G T C A 1e-6-1.562e+013.01%0.87%53.2bp (57.6bp)PH0014.1_Cphx/Jaspar(0.703)
More Information | Similar Motifs Found
motif file (matrix)
27 * G T C A C G T A C G T A G T C A G T A C A C G T C G T A C G T A G T A C C G T A C A G T G A T C 1e-6-1.503e+010.48%0.01%30.1bp (64.2bp)Foxd3/MA0041.1/Jaspar(0.728)
More Information | Similar Motifs Found
motif file (matrix)
28 * T C A G A T C G C G T A C T G A C T G A T A C G T C G A C G T A C A T G A C T G T C G A T C G A 1e-5-1.360e+013.37%1.18%50.8bp (57.4bp)EWSR1-FLI1/MA0149.1/Jaspar(0.733)
More Information | Similar Motifs Found
motif file (matrix)
29 * A C T G A C T G C G T A A C T G A T C G A C G T C G T A A C T G C G T A A C T G 1e-5-1.297e+011.08%0.13%58.4bp (59.4bp)ZNF135/MA1587.1/Jaspar(0.805)
More Information | Similar Motifs Found
motif file (matrix)
30 * A C G T A T G C A C G T A G T C A G T C A C G T A T C G A C G T A C T G A C G T A C T G A G T C 1e-4-9.940e+000.48%0.02%45.6bp (29.9bp)PB0130.1_Gm397_2/Jaspar(0.658)
More Information | Similar Motifs Found
motif file (matrix)
31 * A C T G C G T A A C T G C G A T C T A G G A C T T A C G C G A T 1e-3-8.446e+0010.23%6.89%53.4bp (76.4bp)PB0130.1_Gm397_2/Jaspar(0.778)
More Information | Similar Motifs Found
motif file (matrix)
32 * A T C G A C T G A C G T C T G A A C G T C G T A A C G T A C T G 1e-3-8.183e+001.68%0.55%49.3bp (66.8bp)NEUROG2/MA0669.1/Jaspar(0.685)
More Information | Similar Motifs Found
motif file (matrix)
33 * A T C G C T A G A C T G C G T A A C T G A G T C C G T A A G T C 1e-3-8.106e+002.65%1.14%54.4bp (62.8bp)Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer(0.849)
More Information | Similar Motifs Found
motif file (matrix)
34 * A C T G A G T C A C T G A G T C A C T G A G T C A C T G A G T C A C T G A G T C 1e-2-6.642e+000.36%0.03%36.6bp (49.9bp)PB0095.1_Zfp161_1/Jaspar(0.892)
More Information | Similar Motifs Found
motif file (matrix)
35 * A C G T C G A T A C G T C G A T G C A T T C A G A T C G C T A G 1e-1-4.411e+002.65%1.55%59.0bp (58.4bp)HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer(0.692)
More Information | Similar Motifs Found
motif file (matrix)