Information for 18-TGCAAAGTACCT (Motif 20)

A C G T A C T G A G T C C G T A C G T A C G T A A C T G A C G T C G T A A G T C A G T C A C G T
Reverse Opposite:
C G T A A C T G A C T G A C G T C G T A A G T C A C G T A C G T A C G T A C T G A G T C C G T A
p-value:1e-4
log p-value:-1.025e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets65.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TGCAAAGTACCT-----
TTCNAAGTACTTNNNNN
A C G T A C T G A G T C C G T A C G T A C G T A A C T G A C G T C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A C G T A G T C T G A C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A T C G T A C G G C T A C A T G A G C T

Dmrt1/MA1603.1/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TGCAAAGTACCT
GATACAAAGTATC-
A C G T A C G T A C G T A C T G A G T C C G T A C G T A C G T A A C T G A C G T C G T A A G T C A G T C A C G T
C T A G G C T A G C A T C G T A G A T C G C T A G C T A C G T A C T A G C G A T C G T A C G A T G T A C A C G T

PH0117.1_Nkx3-1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TGCAAAGTACCT-----
TACTAAGTACTTAAATG
A C G T A C T G A G T C C G T A C G T A C G T A A C T G A C G T C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

HNF4G/MA0484.2/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TGCAAAGTACCT-
TCCAAAGTCCAGA
A C G T A C T G A G T C C G T A C G T A C G T A A C T G A C G T C G T A A G T C A G T C A C G T A C G T
C A G T A G T C G A T C T C G A T C G A C T G A A C T G C A G T G A T C G A T C C G T A T C A G C T G A

HNF4A/MA0114.4/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TGCAAAGTACCT-
TCCAAAGTCCAAA
A C G T A C T G A G T C C G T A C G T A C G T A A C T G A C G T C G T A A G T C A G T C A C G T A C G T
C A G T G A T C G A T C T G C A T C G A C T G A A C T G C A G T G A T C G A T C C G T A C T G A C T G A

NFIC/MA0161.2/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TGCAAAGTACCT
NNTGCCAAGNN---
A C G T A C G T A C G T A C T G A G T C C G T A C G T A C G T A A C T G A C G T C G T A A G T C A G T C A C G T
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A A C G T A C G T A C G T

POU5F1/MA1115.1/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TGCAAAGTACCT
ATATGCAAATT----
A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A C G T A A C T G A C G T C G T A A G T C A G T C A C G T
C G T A G C A T T C G A G A C T C T A G A G T C G C T A C T G A G C T A G C A T C A G T A C G T A C G T A C G T A C G T

POU2F3/MA0627.2/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----TGCAAAGTACCT
AATATGCAAATAA---
A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A C G T A A C T G A C G T C G T A A G T C A G T C A C G T
G C T A C G T A G C A T C G T A C A G T C A T G A G T C C G T A C G T A C G T A C G A T C G T A G C T A A C G T A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:9
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----TGCAAAGTACCT
CANAGNNCAAAGTCCA-
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A C G T A A C T G A C G T C G T A A G T C A G T C A C G T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T

PH0116.1_Nkx2-9/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TGCAAAGTACCT-----
TTTTAAGTACTTAAATT
A C G T A C T G A G T C C G T A C G T A C G T A A C T G A C G T C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C G A T G A C T G C A T C G A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C G T A G C T A C G A T G A C T