Information for 1-GAKKCMAGGCWG (Motif 1)

A C T G C G T A A C T G A C T G A G T C G T C A C G T A A C T G A C T G A G T C C G T A A C T G
Reverse Opposite:
A G T C C G A T A C T G A G T C A G T C C G A T A C G T A C T G G T A C G T A C A C G T A G T C
p-value:1e-7
log p-value:-1.634e+01
Information Content per bp:1.866
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif56.3
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets74.3 +/- 14.3bp
Average Position of motif in Background104.3 +/- 75.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GAKKCMAGGCWG--
TGACANARRCCAGRC
A C G T A C T G C G T A A C T G A C T G A G T C G T C A C G T A A C T G A C T G A G T C C G T A A C T G A C G T A C G T
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAKKCMAGGCWG
GAGSCCGAGC--
A C T G C G T A A C T G A C T G A G T C G T C A C G T A A C T G A C T G A G T C C G T A A C T G
A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GAKKCMAGGCWG
----CCAGACAG
A C T G C G T A A C T G A C T G A G T C G T C A C G T A A C T G A C T G A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GAKKCMAGGCWG----
CAAATCCAGACATCACA
A C G T A C T G C G T A A C T G A C T G A G T C G T C A C G T A A C T G A C T G A G T C C G T A A C T G A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GAKKCMAGGCWG
-ATGCCAGACN-
A C T G C G T A A C T G A C T G A G T C G T C A C G T A A C T G A C T G A G T C C G T A A C T G
A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T

NR5A1/MA1540.1/Jaspar

Match Rank:6
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GAKKCMAGGCWG-
--GTCAAGGTCAC
A C T G C G T A A C T G A C T G A G T C G T C A C G T A A C T G A C T G A G T C C G T A A C T G A C G T
A C G T A C G T A C T G G A C T A T G C C T G A C G T A A C T G A C T G G A C T A G T C C T G A G A T C

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:7
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GAKKCMAGGCWG
----CTAGGCCT
A C T G C G T A A C T G A C T G A G T C G T C A C G T A A C T G A C T G A G T C C G T A A C T G
A C G T A C G T A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T

Smad4/MA1153.1/Jaspar

Match Rank:8
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GAKKCMAGGCWG
---TCTAGACA-
A C T G C G T A A C T G A C T G A G T C G T C A C G T A A C T G A C T G A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T

ETV4/MA0764.2/Jaspar

Match Rank:9
Score:0.52
Offset:4
Orientation:forward strand
Alignment:GAKKCMAGGCWG--
----ACAGGAAGTG
A C T G C G T A A C T G A C T G A G T C G T C A C G T A A C T G A C T G A G T C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T T C G A T A G C G T C A A T C G A C T G C G T A G T C A A C T G A G C T T C A G

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GAKKCMAGGCWG
AAGGCAAGTGT-
A C T G C G T A A C T G A C T G A G T C G T C A C G T A A C T G A C T G A G T C C G T A A C T G
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T