Information for 1-CCCTCTTAAACT (Motif 2)

A G T C A T G C A G T C A C G T A G T C A G C T A C G T G T C A C G T A C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G A C G T A C G T A C G T C G T A C T G A A C T G C G T A A C T G A T C G A C T G
p-value:1e-15
log p-value:-3.587e+01
Information Content per bp:1.942
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets113.6 +/- 41.7bp
Average Position of motif in Background155.0 +/- 41.7bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0048.1_Hoxa13/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CCCTCTTAAACT--
AAACCTCGTAAAATTT
A C G T A C G T A G T C A T G C A G T C A C G T A G T C A G C T A C G T G T C A C G T A C G T A A G T C A C G T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

PH0068.1_Hoxc13/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CCCTCTTAAACT--
AAAGCTCGTAAAATTT
A C G T A C G T A G T C A T G C A G T C A C G T A G T C A G C T A C G T G T C A C G T A C G T A A G T C A C G T A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

HOXC13/MA0907.1/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CCCTCTTAAACT
-GCTCGTAAAAA
A G T C A T G C A G T C A C G T A G T C A G C T A C G T G T C A C G T A C G T A A G T C A C G T
A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PH0114.1_Nkx2-5/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CCCTCTTAAACT-
TAAGCCACTTGAATTT
A C G T A C G T A C G T A G T C A T G C A G T C A C G T A G T C A G C T A C G T G T C A C G T A C G T A A G T C A C G T A C G T
G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T

PH0171.1_Nkx2-1/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CCCTCTTAAACT-
TAAGCCACTTGAAATT
A C G T A C G T A C G T A G T C A T G C A G T C A C G T A G T C A G C T A C G T G T C A C G T A C G T A A G T C A C G T A C G T
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

PH0115.1_Nkx2-6/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CCCTCTTAAACT-
TAAGCCACTTAACATT
A C G T A C G T A C G T A G T C A T G C A G T C A C G T A G T C A G C T A C G T G T C A C G T A C G T A A G T C A C G T A C G T
C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

PH0113.1_Nkx2-4/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CCCTCTTAAACT-
TAAGCCACTTGAAATT
A C G T A C G T A C G T A G T C A T G C A G T C A C G T A G T C A G C T A C G T G T C A C G T A C G T A A G T C A C G T A C G T
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

Nkx3-1/MA0124.2/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCCTCTTAAACT
ACCACTTAA---
A G T C A T G C A G T C A C G T A G T C A G C T A C G T G T C A C G T A C G T A A G T C A C G T
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T

PB0092.1_Zbtb7b_1/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CCCTCTTAAACT
AAGCCCCCCAAAAAT
A C G T A C G T A C G T A G T C A T G C A G T C A C G T A G T C A G C T A C G T G T C A C G T A C G T A A G T C A C G T
C T G A C T G A T C A G T A G C T A G C G T A C G T A C A G T C G A T C G C T A G C T A G C T A C G T A G T C A A G C T

NKX2-3/MA0672.1/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCCTCTTAAACT
ACCACTTGAA--
A G T C A T G C A G T C A C G T A G T C A G C T A C G T G T C A C G T A C G T A A G T C A C G T
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T A C G T