Information for 18-TCCAGGAACATA (Motif 20)

A C G T A G T C A G T C C G T A A C T G A C T G C G T A C G T A A G T C C G T A A C G T C G T A
Reverse Opposite:
A C G T C G T A A C G T A C T G A C G T A C G T A G T C A G T C A C G T A C T G A C T G C G T A
p-value:1e-3
log p-value:-8.899e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.0 +/- 0.0bp
Average Position of motif in Background177.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.72
Offset:1
Orientation:forward strand
Alignment:TCCAGGAACATA
-CCAGGAACAG-
A C G T A G T C A G T C C G T A A C T G A C T G C G T A C G T A A G T C C G T A A C G T C G T A
A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:2
Score:0.72
Offset:-6
Orientation:forward strand
Alignment:------TCCAGGAACATA
NNNCTTTCCAGGAAA---
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G A C T G C G T A C G T A A G T C C G T A A C G T C G T A
G A C T C G A T T C A G G A T C G A C T A G C T A G C T A G T C G A T C C G T A C T A G C T A G T C G A T C G A C T G A A C G T A C G T A C G T

Stat5a/MA1624.1/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TCCAGGAACATA
TTTCCAAGAAAT--
A C G T A C G T A C G T A G T C A G T C C G T A A C T G A C T G C G T A C G T A A G T C C G T A A C G T C G T A
C G A T G A C T C G A T G T A C G A T C G C T A C T G A A C T G C G T A C T G A G C T A G A C T A C G T A C G T

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TCCAGGAACATA
CTTCCNGGAA----
A C G T A C G T A C G T A G T C A G T C C G T A A C T G A C T G C G T A C G T A A G T C C G T A A C G T C G T A
A G T C G A C T C A G T G T A C A G T C A T C G T C A G A C T G G T C A C G T A A C G T A C G T A C G T A C G T

STAT1/MA0137.3/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TCCAGGAACATA
TTTCCAGGAAA---
A C G T A C G T A C G T A G T C A G T C C G T A A C T G A C T G C G T A C G T A A G T C C G T A A C G T C G T A
A C G T A G C T A C G T T G A C G A T C C T G A C T A G C A T G C T G A G T C A C T G A A C G T A C G T A C G T

STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer

Match Rank:6
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---TCCAGGAACATA
NTTTCCNGGAAA---
A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G A C T G C G T A C G T A A G T C C G T A A C G T C G T A
T C A G A G C T A C G T A C G T G T A C G A T C C G T A C T A G C A T G G T C A C G T A T C G A A C G T A C G T A C G T

Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer

Match Rank:7
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TCCAGGAACATA
NNCTTCCNGGAAGN--
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G A C T G C G T A C G T A A G T C C G T A A C G T C G T A
A T G C T C G A A G T C A G C T A C G T G T A C A G T C G C T A C T A G C A T G G T C A C T G A T C A G A G T C A C G T A C G T

STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer

Match Rank:8
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----TCCAGGAACATA
NATTTCCNGGAAAT--
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G A C T G C G T A C G T A A G T C C G T A A C G T C G T A
A T G C C T G A G A C T A C G T A C G T G T A C G A T C C G A T C T A G C A T G C G T A C G T A C T G A G A C T A C G T A C G T

PB0006.1_Bcl6b_1/Jaspar

Match Rank:9
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----TCCAGGAACATA
TCTTTCGAGGAATTTG
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G A C T G C G T A C G T A A G T C C G T A A C G T C G T A
C G A T G A T C G A C T C G A T C G A T A G T C A C T G C G T A T C A G C A T G C G T A G C T A G A C T G C A T G A C T T A C G

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:10
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TCCAGGAACATA
ATTTCCAAGAA----
A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G A C T G C G T A C G T A A G T C C G T A A C G T C G T A
C T G A A G C T A C G T A G C T A G T C G A T C G T C A C T G A A C T G G C T A C T G A A C G T A C G T A C G T A C G T