Information for 25-TGCCCTCTGCAC (Motif 40)

A C G T A C T G A G T C A G T C A G T C A C G T A G T C A C G T A C T G A G T C C G T A A G T C
Reverse Opposite:
A C T G A C G T A C T G A G T C C G T A A C T G C G T A A C T G A C T G A C T G A G T C C G T A
p-value:1e-1
log p-value:-3.153e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif0.09%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets34.0 +/- 19.8bp
Average Position of motif in Background104.9 +/- 66.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)5.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TGCCCTCTGCAC--
TGACCTTTGCCCTA
A C G T A C T G A G T C A G T C A G T C A C G T A G T C A C G T A C T G A G T C C G T A A G T C A C G T A C G T
A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:2
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TGCCCTCTGCAC---
TGACCTTTGCCCTAN
A C G T A C T G A G T C A G T C A G T C A C G T A G T C A C G T A C T G A G T C C G T A A G T C A C G T A C G T A C G T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TGCCCTCTGCAC--
TGACCTTTGCCCCA
A C G T A C T G A G T C A G T C A G T C A C G T A G T C A C G T A C T G A G T C C G T A A G T C A C G T A C G T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A

PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer

Match Rank:4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TGCCCTCTGCAC---
TGACCTTTGMCCTNB
A C G T A C T G A G T C A G T C A G T C A C G T A G T C A C G T A C T G A G T C C G T A A G T C A C G T A C G T A C G T
G C A T T C A G T G C A G T A C G A T C A G C T A G C T A C G T T A C G T G C A G A T C G A T C G A C T G C T A A C T G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TGCCCTCTGCAC
CTGACCTTTG---
A C G T A C G T A C T G A G T C A G T C A G T C A C G T A G T C A C G T A C T G A G T C C G T A A G T C
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T

CTCFL/MA1102.2/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TGCCCTCTGCAC
GCGCCCCCTGNN-
A C G T A C G T A C T G A G T C A G T C A G T C A C G T A G T C A C G T A C T G A G T C C G T A A G T C
T A C G A G T C C T A G G T A C T A G C T A G C A G T C T A G C A C G T T A C G A T G C A G C T A C G T

NR2C2/MA0504.1/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TGCCCTCTGCAC---
TGACCTCTGACCCCN
A C G T A C T G A G T C A G T C A G T C A C G T A G T C A C G T A C T G A G T C C G T A A G T C A C G T A C G T A C G T
G A C T T C A G T G C A G T A C A G T C A G C T A G T C G A C T T A C G G T C A G T A C T G A C A G T C A G T C A C G T

HNF4A(var.2)/MA1494.1/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TGCCCTCTGCAC--
NTGACCTTTGGACCC
A C G T A C G T A C T G A G T C A G T C A G T C A C G T A G T C A C G T A C T G A G T C C G T A A G T C A C G T A C G T
C A T G G A C T T C A G T G C A G T A C G T A C A G C T G C A T A G C T C T A G C T A G G T C A G T A C A G T C A G T C

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:9
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TGCCCTCTGCAC----
TGGACTTTGNNCTNTG
A C G T A C T G A G T C A G T C A G T C A C G T A G T C A C G T A C T G A G T C C G T A A G T C A C G T A C G T A C G T A C G T
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer

Match Rank:10
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TGCCCTCTGCAC
TGACCTYTGVMC
A C G T A C T G A G T C A G T C A G T C A C G T A G T C A C G T A C T G A G T C C G T A A G T C
G C A T T C A G T G C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A T G A C A T G C