Information for 3-TGCACTTG (Motif 12)

A C G T A T C G A G T C C G T A A G T C A C G T A C G T A C T G
Reverse Opposite:
A G T C C G T A C G T A A C T G A C G T A C T G A T G C C G T A
p-value:1e-4
log p-value:-9.528e+00
Information Content per bp:1.949
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif27.27%
Number of Background Sequences with motif597.9
Percentage of Background Sequences with motif0.77%
Average Position of motif in Targets86.0 +/- 44.7bp
Average Position of motif in Background95.3 +/- 84.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX2-8/MA0673.1/Jaspar

Match Rank:1
Score:0.82
Offset:1
Orientation:forward strand
Alignment:TGCACTTG--
-CCACTTGAA
A C G T A T C G A G T C C G T A A G T C A C G T A C G T A C T G A C G T A C G T
A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A

NKX2-3/MA0672.1/Jaspar

Match Rank:2
Score:0.81
Offset:0
Orientation:forward strand
Alignment:TGCACTTG--
ACCACTTGAA
A C G T A T C G A G T C C G T A A G T C A C G T A C G T A C T G A C G T A C G T
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

SNAI3/MA1559.1/Jaspar

Match Rank:3
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:TGCACTTG--
TGCACCTGTT
A C G T A T C G A G T C C G T A A G T C A C G T A C G T A C T G A C G T A C G T
A G C T T C A G G A T C T G C A A T G C G A T C G A C T C T A G G A C T G A C T

SNAI1/MA1558.1/Jaspar

Match Rank:4
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:TGCACTTG--
NGCACCTGCN
A C G T A T C G A G T C C G T A A G T C A C G T A C G T A C T G A C G T A C G T
G A C T T C A G G A T C G T C A G A T C A G T C C G A T C A T G G A T C G A T C

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:5
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----TGCACTTG-----
NNTNCGCACCTGTNGAN
A C G T A C G T A C G T A C G T A C G T A T C G A G T C C G T A A G T C A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T
G C A T C A G T G C A T A G C T G A T C T C A G G T A C C T G A A T G C T A G C A C G T A C T G A C G T C A T G C A T G G T C A A G C T

PH0111.1_Nkx2-2/Jaspar

Match Rank:6
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---TGCACTTG------
ATAACCACTTGAAAATT
A C G T A C G T A C G T A C G T A T C G A G T C C G T A A G T C A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-TGCACTTG-
MRSCACTYAA
A C G T A C G T A T C G A G T C C G T A A G T C A C G T A C G T A C T G A C G T
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

PH0114.1_Nkx2-5/Jaspar

Match Rank:8
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---TGCACTTG-----
TAAGCCACTTGAATTT
A C G T A C G T A C G T A C G T A T C G A G T C C G T A A G T C A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T
G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T

Npas2/MA0626.1/Jaspar

Match Rank:9
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TGCACTTG--
GGCACGTGTC
A C G T A T C G A G T C C G T A A G T C A C G T A C G T A C T G A C G T A C G T
C T A G T A C G A G T C C G T A G T A C C T A G A C G T C T A G A C G T G T A C

NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TGCACTTG
NVCACGTG
A C G T A T C G A G T C C G T A A G T C A C G T A C G T A C T G
C G A T T G C A G T A C C G T A A G T C C T A G G A C T C A T G