Information for 3-GATKCCTTGTCT (Motif 3)

A C T G C G T A A C G T A C T G G T A C G A T C C G A T C G A T A T C G C G A T A G T C A C G T
Reverse Opposite:
C G T A A C T G C G T A A T G C C G T A C G T A C A T G A C T G G T A C C G T A G A C T G T A C
p-value:1e-7
log p-value:-1.669e+01
Information Content per bp:1.739
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif45.45%
Number of Background Sequences with motif789.4
Percentage of Background Sequences with motif1.05%
Average Position of motif in Targets84.2 +/- 53.1bp
Average Position of motif in Background99.2 +/- 79.6bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GATKCCTTGTCT----
ANTCCTTTGTCTNNNN
A C T G C G T A A C G T A C T G G T A C G A T C C G A T C G A T A T C G C G A T A G T C A C G T A C G T A C G T A C G T A C G T
C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T

GATA4/MA0482.2/Jaspar

Match Rank:2
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GATKCCTTGTCT--
--TTCCTTATCTTT
A C T G C G T A A C G T A C T G G T A C G A T C C G A T C G A T A T C G C G A T A G T C A C G T A C G T A C G T
A C G T A C G T G C A T G C A T A G T C G A T C G C A T G C A T G T C A G C A T A G T C G C A T A G C T G C A T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.65
Offset:6
Orientation:forward strand
Alignment:GATKCCTTGTCT--
------TWGTCTGV
A C T G C G T A A C G T A C T G G T A C G A T C C G A T C G A T A T C G C G A T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

Sox6/MA0515.1/Jaspar

Match Rank:4
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GATKCCTTGTCT-
---CCATTGTTTT
A C T G C G T A A C G T A C T G G T A C G A T C C G A T C G A T A T C G C G A T A G T C A C G T A C G T
A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

PRDM1/MA0508.3/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GATKCCTTGTCT-
--TTCTTTCTCTT
A C T G C G T A A C G T A C T G G T A C G A T C C G A T C G A T A T C G C G A T A G T C A C G T A C G T
A C G T A C G T G A C T G C A T G T A C C G A T G C A T C G A T G T A C C G A T G T A C G A C T G A C T

Smad4/MA1153.1/Jaspar

Match Rank:6
Score:0.59
Offset:7
Orientation:forward strand
Alignment:GATKCCTTGTCT---
-------TGTCTAGA
A C T G C G T A A C G T A C T G G T A C G A T C C G A T C G A T A T C G C G A T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.58
Offset:6
Orientation:forward strand
Alignment:GATKCCTTGTCT--
------CTGTCTGG
A C T G C G T A A C G T A C T G G T A C G A T C C G A T C G A T A T C G C G A T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GATKCCTTGTCT-------
--NNTNNTGTCTGGNNTNG
A C T G C G T A A C G T A C T G G T A C G A T C C G A T C G A T A T C G C G A T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

GATA2/MA0036.3/Jaspar

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GATKCCTTGTCT--
---TTCTTATCTTT
A C T G C G T A A C G T A C T G G T A C G A T C C G A T C G A T A T C G C G A T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C G A T A G C T A G T C G C A T G C A T C G T A G C A T A G T C G C A T A G C T G A C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GATKCCTTGTCT--
----VBSYGTCTGG
A C T G C G T A A C G T A C T G G T A C G A T C C G A T C G A T A T C G C G A T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G