Information for 12-AATCACCTACAT (Motif 16)

G T C A C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A G T C G T C A A C G T
Reverse Opposite:
C G T A A C G T A C T G A C G T C G T A A C T G A C T G A C G T A C T G C G T A A C G T A C G T
p-value:1e-3
log p-value:-8.552e+00
Information Content per bp:1.962
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets177.0 +/- 0.0bp
Average Position of motif in Background153.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORC/MA1151.1/Jaspar

Match Rank:1
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:AATCACCTACAT--
--TGACCTANTTAN
G T C A C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A G T C G T C A A C G T A C G T A C G T
A C G T A C G T G A C T T C A G T G C A G A T C G T A C A G C T T G C A T A G C G C A T C G A T G C T A G A C T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AATCACCTACAT---
-TTGACCTANTTATN
G T C A C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A G T C G T C A A C G T A C G T A C G T A C G T
A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RORB/MA1150.1/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AATCACCTACAT
-NTGACCTAATT
G T C A C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A G T C G T C A A C G T
A C G T C T A G G A C T C T A G T C G A G A T C T G A C G A C T T G C A G C T A C G A T G C A T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:AATCACCTACAT
--TGACCTARTT
G T C A C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A G T C G T C A A C G T
A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:AATCACCTACAT
--TGACCTARTT
G T C A C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A G T C G T C A A C G T
A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

NR1H4/MA1110.1/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AATCACCTACAT
TCAATGACCTA---
A C G T A C G T G T C A C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A G T C G T C A A C G T
A C G T A G T C C G T A C T G A A G C T C T A G G T C A G T A C G T A C A G C T G C T A A C G T A C G T A C G T

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AATCACCTACAT-
NNHYTGACCTAGWTT
A C G T A C G T G T C A C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A G T C G T C A A C G T A C G T
A C G T G A T C G A C T G A T C A C G T A C T G T C G A A G T C A G T C A G C T C T G A T C A G C G A T C G A T G C A T

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AATCACCTACAT
--TGACCTTGAT
G T C A C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A G T C G T C A A C G T
A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AATCACCTACAT-
-BTGACCTAVTTW
G T C A C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A G T C G T C A A C G T A C G T
A C G T A G T C A C G T T C A G T C G A A G T C A G T C A G C T C T G A T C A G C G A T G C A T G C A T

ZKSCAN5/MA1652.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AATCACCTACAT-
NNCTCACCTCCTNN
A C G T G T C A C G T A A C G T A G T C C G T A A G T C A G T C A C G T C G T A A G T C G T C A A C G T A C G T
A G C T A G C T G T A C A G C T A G T C T C G A G A T C A G T C A C G T A G T C G A T C G A C T A G T C G A T C