Information for 5-AGCMCACTYTGC (Motif 5)

C G T A A C T G A G T C G T C A A G T C C T G A G T A C A C G T A G T C A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C C G T A C T A G C G T A A C T G A G C T C T A G A C G T A C T G A G T C C G A T
p-value:1e-7
log p-value:-1.637e+01
Information Content per bp:1.899
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif23.08%
Number of Background Sequences with motif40.8
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets40.7 +/- 25.5bp
Average Position of motif in Background70.6 +/- 80.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZSCAN4/MA1155.1/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGCMCACTYTGC---
TGCACACACTGAAAA
C G T A A C T G A G T C G T C A A G T C C T G A G T A C A C G T A G T C A C G T A C T G A G T C A C G T A C G T A C G T
G A C T T C A G A T G C C G T A A G T C C G T A G A T C T G C A G T A C A C G T A C T G C G T A G T C A C T G A C T G A

PB0130.1_Gm397_2/Jaspar

Match Rank:2
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AGCMCACTYTGC-
AGCGGCACACACGCAA
A C G T A C G T A C G T C G T A A C T G A G T C G T C A A G T C C T G A G T A C A C G T A G T C A C G T A C T G A G T C A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AGCMCACTYTGC--
VAGRACAKWCTGTYC
A C G T C G T A A C T G A G T C G T C A A G T C C T G A G T A C A C G T A G T C A C G T A C T G A G T C A C G T A C G T
T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGCMCACTYTGC--
VAGRACAKNCTGTBC
A C G T C G T A A C T G A G T C G T C A A G T C C T G A G T A C A C G T A G T C A C G T A C T G A G T C A C G T A C G T
T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AGCMCACTYTGC---
NAGAACAGNCTGTNCT
A C G T C G T A A C T G A G T C G T C A A G T C C T G A G T A C A C G T A G T C A C G T A C T G A G T C A C G T A C G T A C G T
T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AGCMCACTYTGC--
AAGAACATWHTGTTC
A C G T C G T A A C T G A G T C G T C A A G T C C T G A G T A C A C G T A G T C A C G T A C T G A G T C A C G T A C G T
C G T A C T G A C T A G C G T A C G T A A G T C C G T A C A G T G C A T G T C A C G A T A C T G A C G T G C A T G A T C

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AGCMCACTYTGC
-MRSCACTYAA-
C G T A A C T G A G T C G T C A A G T C C T G A G T A C A C G T A G T C A C G T A C T G A G T C
A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T

PB0114.1_Egr1_2/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---AGCMCACTYTGC-
NNAGTCCCACTCNNNN
A C G T A C G T A C G T C G T A A C T G A G T C G T C A A G T C C T G A G T A C A C G T A G T C A C G T A C T G A G T C A C G T
T G A C G A T C C G T A C T A G G C A T G T A C G A T C G A T C G T C A A G T C A G C T G A T C T A G C C T A G T G A C T G C A

ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-AGCMCACTYTGC--
RGMCCTACTRTGTGC
A C G T C G T A A C T G A G T C G T C A A G T C C T G A G T A C A C G T A G T C A C G T A C T G A G T C A C G T A C G T
C T A G T C A G T G C A A G T C A G T C A G C T C G T A G T A C A G C T T C G A A G C T A T C G A G C T C T A G G A T C

ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:AGCMCACTYTGC--
--VCCTCTCTGDDY
C G T A A C T G A G T C G T C A A G T C C T G A G T A C A C G T A G T C A C G T A C T G A G T C A C G T A C G T
A C G T A C G T T G A C T A G C G T A C G C A T A G T C A C G T A T G C C G A T T A C G C G A T C A G T A G T C