Information for 2-AACAGGTTGCCT (Motif 2)

C T G A C G T A A G T C C G T A A T C G A T C G C G A T C G A T A T C G A G T C G T A C A C G T
Reverse Opposite:
C G T A A C T G A C T G A T G C C G T A C G T A T A G C A T G C A C G T A C T G C G A T A G C T
p-value:1e-7
log p-value:-1.800e+01
Information Content per bp:1.821
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif30.00%
Number of Background Sequences with motif44.9
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets129.0 +/- 47.5bp
Average Position of motif in Background119.2 +/- 68.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GRHL2/MA1105.2/Jaspar

Match Rank:1
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--AACAGGTTGCCT
AAAACAGGTTTT--
A C G T A C G T C T G A C G T A A G T C C G T A A T C G A T C G C G A T C G A T A T C G A G T C G T A C A C G T
T G C A T C G A C T G A C T G A T A G C G C T A C T A G T A C G G A C T G A C T A G C T C A G T A C G T A C G T

SIX1/MA1118.1/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-AACAGGTTGCCT
TATCAGGTTAC--
A C G T C T G A C G T A A G T C C G T A A T C G A T C G C G A T C G A T A T C G A G T C G T A C A C G T
C A G T T G C A G C A T G A T C C G T A C A T G C T A G G C A T C G A T G C T A G T A C A C G T A C G T

SIX2/MA1119.1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AACAGGTTGCCT--
GTATCAGGTTTCAGNN
A C G T A C G T C T G A C G T A A G T C C G T A A T C G A T C G C G A T C G A T A T C G A G T C G T A C A C G T A C G T A C G T
C T A G C A G T T G C A G C A T G A T C C G T A C A T G C T A G G A C T C A G T C G A T G T A C G C T A A C T G C G A T C G A T

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AACAGGTTGCCT
CACAGN------
C T G A C G T A A G T C C G T A A T C G A T C G C G A T C G A T A T C G A G T C G T A C A C G T
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AACAGGTTGCCT
ANCAGGATGT--
C T G A C G T A A G T C C G T A A T C G A T C G C G A T C G A T A T C G A G T C G T A C A C G T
C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T A C G T A C G T

SCRT2/MA0744.2/Jaspar

Match Rank:6
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----AACAGGTTGCCT
AAAGCAACAGGTGGTT-
A C G T A C G T A C G T A C G T A C G T C T G A C G T A A G T C C G T A A T C G A T C G C G A T C G A T A T C G A G T C G T A C A C G T
C T G A T C G A C G T A A C T G G A T C G T C A C T G A T A G C G C T A C T A G C A T G G A C T C A T G C A T G G A C T G C A T A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AACAGGTTGCCT
GKVTCADRTTWC--
A C G T A C G T C T G A C G T A A G T C C G T A A T C G A T C G C G A T C G A T A T C G A G T C G T A C A C G T
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T A C G T

SCRT1/MA0743.2/Jaspar

Match Rank:8
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----AACAGGTTGCCT
AATTCAACAGGTGGTT-
A C G T A C G T A C G T A C G T A C G T C T G A C G T A A G T C C G T A A T C G A T C G C G A T C G A T A T C G A G T C G T A C A C G T
C G T A C T G A C G A T A C G T G A T C G T C A C T G A A T G C G C T A C T A G C T A G G A C T C A T G C A T G A G C T G C A T A C G T

Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer

Match Rank:9
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----AACAGGTTGCCT
VGGTVTCAGRTTWCA-
A C G T A C G T A C G T A C G T C T G A C G T A A G T C C G T A A T C G A T C G C G A T C G A T A T C G A G T C G T A C A C G T
T A G C T C A G T C A G C A G T T C A G A C G T A G T C T C G A C T A G C T A G A C G T A C G T C G A T G T A C G T C A A C G T

PB0047.1_Myf6_1/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----AACAGGTTGCCT
GAAGAACAGGTGTCCG
A C G T A C G T A C G T A C G T C T G A C G T A A G T C C G T A A T C G A T C G C G A T C G A T A T C G A G T C G T A C A C G T
T C A G T C G A C T G A A T C G T C G A C T G A A G T C C G T A A T C G A C T G G A C T A C T G A C G T A G T C G A T C A C T G