Information for 25-WMYYTRTYAGAS (Motif 31)

C G T A G T A C A G C T A G T C A C G T C T G A C G A T A G C T C G T A A C T G C G T A A T C G
Reverse Opposite:
T A C G A C G T A G T C A C G T C T G A C G T A A G C T C G T A C T A G C T G A A C T G C G A T
p-value:1e-3
log p-value:-8.736e+00
Information Content per bp:1.776
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif737.5
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets88.7 +/- 73.1bp
Average Position of motif in Background94.4 +/- 126.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0187.1_Tcf7_2/Jaspar

Match Rank:1
Score:0.60
Offset:1
Orientation:forward strand
Alignment:WMYYTRTYAGAS----
-CCGTATTATAAACAA
C G T A G T A C A G C T A G T C A C G T C T G A C G A T A G C T C G T A A C T G C G T A A T C G A C G T A C G T A C G T A C G T
A C G T G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:2
Score:0.58
Offset:3
Orientation:forward strand
Alignment:WMYYTRTYAGAS
---YTGWCADY-
C G T A G T A C A G C T A G T C A C G T C T G A C G A T A G C T C G T A A C T G C G T A A T C G
A C G T A C G T A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C A C G T

PB0022.1_Gata5_1/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---WMYYTRTYAGAS--
NTNTTCTTATCAGTNTN
A C G T A C G T A C G T C G T A G T A C A G C T A G T C A C G T C T G A C G A T A G C T C G T A A C T G C G T A A T C G A C G T A C G T
G C T A G C A T G T A C A G C T A G C T A T G C C G A T C G A T C G T A A C G T A G T C C G T A T C A G G A C T G C A T G C A T C G T A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:WMYYTRTYAGAS-
-AGGTGHCAGACA
C G T A G T A C A G C T A G T C A C G T C T G A C G A T A G C T C G T A A C T G C G T A A T C G A C G T
A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

MEIS1/MA0498.2/Jaspar

Match Rank:5
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:WMYYTRTYAGAS
---NTGTCAN--
C G T A G T A C A G C T A G T C A C G T C T G A C G A T A G C T C G T A A C T G C G T A A T C G
A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:WMYYTRTYAGAS--
------BCAGACWA
C G T A G T A C A G C T A G T C A C G T C T G A C G A T A G C T C G T A A C T G C G T A A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:WMYYTRTYAGAS--
-AGGTGNCAGACAG
C G T A G T A C A G C T A G T C A C G T C T G A C G A T A G C T C G T A A C T G C G T A A T C G A C G T A C G T
A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:WMYYTRTYAGAS
--VBTGWCAGCB
C G T A G T A C A G C T A G T C A C G T C T G A C G A T A G C T C G T A A C T G C G T A A T C G
A C G T A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

MEIS2/MA0774.1/Jaspar

Match Rank:9
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:WMYYTRTYAGAS
--GCTGTCAA--
C G T A G T A C A G C T A G T C A C G T C T G A C G A T A G C T C G T A A C T G C G T A A T C G
A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:WMYYTRTYAGAS-
-NTTTCTNAGAAA
C G T A G T A C A G C T A G T C A C G T C T G A C G A T A G C T C G T A A C T G C G T A A T C G A C G T
A C G T C T G A A C G T A C G T A C G T A G T C G A C T C G A T C T G A A C T G C G T A C G T A T C G A