Information for 1-GAAGTTCAAGAC (Motif 3)

A C T G C G T A C G T A A C T G A C G T A C G T A G T C C G T A C G T A A C T G C G T A A G T C
Reverse Opposite:
A C T G A C G T A G T C A C G T A C G T A C T G C G T A C G T A A G T C A C G T A C G T A G T C
p-value:1e-4
log p-value:-1.036e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets93.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR6A1/MA1541.1/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GAAGTTCAAGAC---
GTCAAGTTCAAGGTCAA
A C G T A C G T A C T G C G T A C G T A A C T G A C G T A C G T A G T C C G T A C G T A A C T G C G T A A G T C A C G T A C G T A C G T
A C T G A G C T A T G C C T G A T G C A C A T G C A G T A G C T A G T C C G T A G T C A C A T G C A T G A C G T A G T C C T G A C G T A

RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer

Match Rank:2
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GAAGTTCAAGAC
CAAAGKTCAA---
A C G T A C T G C G T A C G T A A C T G A C G T A C G T A G T C C G T A C G T A A C T G C G T A A G T C
G A T C G T C A T C G A T C G A C T A G C A T G A G C T G T A C T C G A T C G A A C G T A C G T A C G T

NR1I3/MA1534.1/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GAAGTTCAAGAC
AAAGTTCAT---
A C T G C G T A C G T A A C T G A C G T A C G T A G T C C G T A C G T A A C T G C G T A A G T C
C G T A C T G A C T G A A C T G A C G T C A G T A G T C C T G A G A C T A C G T A C G T A C G T

ZBTB12/MA1649.1/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GAAGTTCAAGAC
-NNGTTCCAGNN
A C T G C G T A C G T A A C T G A C G T A C G T A G T C C G T A C G T A A C T G C G T A A G T C
A C G T T C A G C A T G C T A G G A C T A C G T G T A C A G T C T C G A A T C G T C G A A G C T

RARG(var.3)/MA1553.1/Jaspar

Match Rank:5
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GAAGTTCAAGAC---
-AAGGTCATGACCTT
A C T G C G T A C G T A A C T G A C G T A C G T A G T C C G T A C G T A A C T G C G T A A G T C A C G T A C G T A C G T
A C G T C T G A T C G A C A T G C A T G C G A T A G T C C T G A G A C T T C A G G C T A G T A C G T A C A G C T G A C T

RARB(var.3)/MA1552.1/Jaspar

Match Rank:6
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GAAGTTCAAGAC---
-AAGGTCATGACCTT
A C T G C G T A C G T A A C T G A C G T A C G T A G T C C G T A C G T A A C T G C G T A A G T C A C G T A C G T A C G T
A C G T C T G A T C G A C T A G C A T G A C G T A G T C C T G A G A C T T C A G T C G A G T A C T G A C A G C T G A C T

RXRG(var.2)/MA1556.1/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GAAGTTCAAGAC---
-GAGGTCATGACCTC
A C T G C G T A C G T A A C T G A C G T A C G T A G T C C G T A C G T A A C T G C G T A A G T C A C G T A C G T A C G T
A C G T T C A G T C G A A T C G A C T G C A G T A G T C G T C A A G C T T C A G G T C A G T A C T A G C A G C T A G T C

PB0090.1_Zbtb12_1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GAAGTTCAAGAC---
CTAAGGTTCTAGATCAC
A C G T A C G T A C T G C G T A C G T A A C T G A C G T A C G T A G T C C G T A C G T A A C T G C G T A A G T C A C G T A C G T A C G T
A T G C A C G T G C T A T C G A A C T G C T A G C G A T C G A T A G T C A G C T T C G A C T A G T C G A G C A T A G T C T G C A A G T C

RXRB(var.2)/MA1555.1/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GAAGTTCAAGAC---
-GAGGTCATGACCTC
A C T G C G T A C G T A A C T G A C G T A C G T A G T C C G T A C G T A A C T G C G T A A G T C A C G T A C G T A C G T
A C G T T C A G C T G A C A T G C A T G A C G T A G T C C T G A A G C T T C A G T G C A T G A C G T A C A G C T A G T C

VDR/MA0693.2/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GAAGTTCAAGAC
TGAGTTCA----
A C T G C G T A C G T A A C T G A C G T A C G T A G T C C G T A C G T A A C T G C G T A A G T C
G A C T T C A G C T G A A C T G A C G T C A G T G A T C C T G A A C G T A C G T A C G T A C G T