Information for 2-TAACCTACATTC (Motif 4)

A C G T C G T A C G T A A G T C A G T C A C G T C G T A A G T C C G T A A C G T A C G T A G T C
Reverse Opposite:
A C T G C G T A C G T A A C G T A C T G A C G T C G T A A C T G A C T G A C G T A C G T C G T A
p-value:1e-4
log p-value:-1.048e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets23.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORC/MA1151.1/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TAACCTACATTC
TGACCTANTTAN
A C G T C G T A C G T A A G T C A G T C A C G T C G T A A G T C C G T A A C G T A C G T A G T C
G A C T T C A G T G C A G A T C G T A C A G C T T G C A T A G C G C A T C G A T G C T A G A C T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TAACCTACATTC-
TTGACCTANTTATN
A C G T A C G T C G T A C G T A A G T C A G T C A C G T C G T A A G T C C G T A A C G T A C G T A G T C A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RORB/MA1150.1/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TAACCTACATTC
NTGACCTAATT--
A C G T A C G T C G T A C G T A A G T C A G T C A C G T C G T A A G T C C G T A A C G T A C G T A G T C
C T A G G A C T C T A G T C G A G A T C T G A C G A C T T G C A G C T A C G A T G C A T A C G T A C G T

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:4
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TAACCTACATTC
NNHYTGACCTAGWTT-
A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G T C A G T C A C G T C G T A A G T C C G T A A C G T A C G T A G T C
A C G T G A T C G A C T G A T C A C G T A C T G T C G A A G T C A G T C A G C T C T G A T C A G C G A T C G A T G C A T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TAACCTACATTC
TGACCTARTT--
A C G T C G T A C G T A A G T C A G T C A C G T C G T A A G T C C G T A A C G T A C G T A G T C
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TAACCTACATTC
TGACCTARTT--
A C G T C G T A C G T A A G T C A G T C A C G T C G T A A G T C C G T A A C G T A C G T A G T C
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T A C G T

TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer

Match Rank:7
Score:0.64
Offset:4
Orientation:forward strand
Alignment:TAACCTACATTC--
----CYRCATTCCA
A C G T C G T A C G T A A G T C A G T C A C G T C G T A A G T C C G T A A C G T A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T T G A C A G T C C T G A T G A C C G T A A C G T A C G T A G T C A G T C C G T A

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:8
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TAACCTACATTC
BTGACCTAVTTW-
A C G T A C G T C G T A C G T A A G T C A G T C A C G T C G T A A G T C C G T A A C G T A C G T A G T C
A G T C A C G T T C A G T C G A A G T C A G T C A G C T C T G A T C A G C G A T G C A T G C A T A C G T

TEAD2/MA1121.1/Jaspar

Match Rank:9
Score:0.63
Offset:4
Orientation:forward strand
Alignment:TAACCTACATTC-----
----TCACATTCCAGCC
A C G T C G T A C G T A A G T C A G T C A C G T C G T A A G T C C G T A A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G A T C T C G A T G A C C T G A A G C T C G A T A G T C G A T C G C T A C A T G A T G C T A G C

TEAD4/MA0809.2/Jaspar

Match Rank:10
Score:0.61
Offset:4
Orientation:forward strand
Alignment:TAACCTACATTC----
----CCACATTCCAGG
A C G T C G T A C G T A A G T C A G T C A C G T C G T A A G T C C G T A A C G T A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C G A T C C T G A T G A C G C T A A G C T C G A T A G T C G A T C G C T A C T A G T A C G