Information for 2-CYGTCTCG (Motif 8)

T G A C A G C T A C T G C G A T A T G C A C G T A G T C A C T G
Reverse Opposite:
G T A C A C T G C G T A A T C G G C T A A G T C T C G A A C T G
p-value:1e-11
log p-value:-2.587e+01
Information Content per bp:1.769
Number of Target Sequences with motif265.0
Percentage of Target Sequences with motif3.69%
Number of Background Sequences with motif1008.5
Percentage of Background Sequences with motif2.37%
Average Position of motif in Targets108.0 +/- 56.6bp
Average Position of motif in Background101.0 +/- 56.3bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.76
Offset:0
Orientation:forward strand
Alignment:CYGTCTCG
CTGTCTGG
T G A C A G C T A C T G C G A T A T G C A C G T A G T C A C T G
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Smad4/MA1153.1/Jaspar

Match Rank:2
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CYGTCTCG-
-TGTCTAGA
T G A C A G C T A C T G C G A T A T G C A C G T A G T C A C T G A C G T
A C G T G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----CYGTCTCG-----
NNTNNTGTCTGGNNTNG
A C G T A C G T A C G T A C G T T G A C A G C T A C T G C G A T A T G C A C G T A G T C A C T G A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CYGTCTCG
VBSYGTCTGG
A C G T A C G T T G A C A G C T A C T G C G A T A T G C A C G T A G T C A C T G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

PRDM4/MA1647.1/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CYGTCTCG-
GTCTGTTTCTA
A C G T A C G T T G A C A G C T A C T G C G A T A T G C A C G T A G T C A C T G A C G T
C T A G C A G T T A G C C G A T T C A G G C A T A G C T G C A T G T A C G C A T G C T A

SMAD5/MA1557.1/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CYGTCTCG---
-TGTCTAGACA
T G A C A G C T A C T G C G A T A T G C A C G T A G T C A C T G A C G T A C G T A C G T
A C G T C G A T C T A G C A G T A T G C A C G T T G C A A C T G G T C A A G T C C T G A

Smad2::Smad3/MA1622.1/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CYGTCTCG---
ATGATGACTCATAA
A C G T A C G T A C G T T G A C A G C T A C T G C G A T A T G C A C G T A G T C A C T G A C G T A C G T A C G T
C T G A G A C T C A T G T C G A G C A T C A T G C G T A A T G C C G A T G T A C G C T A A G C T G C T A T G C A

PB0203.1_Zfp691_2/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CYGTCTCG------
TACGAGACTCCTCTAAC
A C G T A C G T A C G T T G A C A G C T A C T G C G A T A T G C A C G T A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C A G T C T G A A T G C A C T G C G T A C A T G C T G A A T G C A C G T A G T C T G A C A G C T G A T C C G A T T G C A G T C A T A G C

PB0139.1_Irf5_2/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CYGTCTCG-----
NNAATTCTCGNTNAN
A C G T A C G T T G A C A G C T A C T G C G A T A T G C A C G T A G T C A C T G A C G T A C G T A C G T A C G T A C G T
A T C G T A C G C T G A C T G A G A C T G A C T T A G C A G C T A G T C C A T G C T A G G C A T G A T C C G T A T C G A

BATF3/MA0835.2/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CYGTCTCG--
TATGACTCATA
A C G T T G A C A G C T A C T G C G A T A T G C A C G T A G T C A C T G A C G T A C G T
C G A T G T C A G C A T C A T G G C T A A T G C C G A T G T A C C G T A C G A T G C T A