Information for 1-GRARWCTCYCTA (Motif 1)

A C T G C T G A C G T A C T A G C G T A A G T C A C G T A G T C A G T C G T A C A C G T C G T A
Reverse Opposite:
A C G T C G T A C A T G C T A G A C T G C G T A A C T G C G A T A G T C A C G T A G C T A G T C
p-value:1e-9
log p-value:-2.097e+01
Information Content per bp:1.865
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif28.57%
Number of Background Sequences with motif57.0
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets107.8 +/- 43.3bp
Average Position of motif in Background92.6 +/- 76.6bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GRARWCTCYCTA
GGAAATTCCC--
A C T G C T G A C G T A C T A G C G T A A G T C A C G T A G T C A G T C G T A C A C G T C G T A
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GRARWCTCYCTA
GGAAATTCCC--
A C T G C T G A C G T A C T A G C G T A A G T C A C G T A G T C A G T C G T A C A C G T C G T A
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GRARWCTCYCTA
GGGAAATCCCCN-
A C G T A C T G C T G A C G T A C T A G C G T A A G T C A C G T A G T C A G T C G T A C A C G T C G T A
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T

PB0203.1_Zfp691_2/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GRARWCTCYCTA---
TACGAGACTCCTCTAAC
A C G T A C G T A C T G C T G A C G T A C T A G C G T A A G T C A C G T A G T C A G T C G T A C A C G T C G T A A C G T A C G T A C G T
C A G T C T G A A T G C A C T G C G T A C A T G C T G A A T G C A C G T A G T C T G A C A G C T G A T C C G A T T G C A G T C A T A G C

MF0003.1_REL_class/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GRARWCTCYCTA
GGAAATCCCC--
A C T G C T G A C G T A C T A G C G T A A G T C A C G T A G T C A G T C G T A C A C G T C G T A
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GRARWCTCYCTA
GGAAANCCCC--
A C T G C T G A C G T A C T A G C G T A A G T C A C G T A G T C A G T C G T A C A C G T C G T A
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T

PB0139.1_Irf5_2/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GRARWCTCYCTA--
NNAATTCTCGNTNAN
A C G T A C T G C T G A C G T A C T A G C G T A A G T C A C G T A G T C A G T C G T A C A C G T C G T A A C G T A C G T
A T C G T A C G C T G A C T G A G A C T G A C T T A G C A G C T A G T C C A T G C T A G G C A T G A T C C G T A T C G A

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:8
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GRARWCTCYCTA---
---AGGTCTCTAACC
A C T G C T G A C G T A C T A G C G T A A G T C A C G T A G T C A G T C G T A C A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C T G A T C A G A C T G C A G T A G T C G A C T A G T C A C G T C G T A G C T A A T G C G A T C

PH0152.1_Pou6f1_2/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GRARWCTCYCTA-----
GCAACCTCATTATNNNN
A C T G C T G A C G T A C T A G C G T A A G T C A C G T A G T C A G T C G T A C A C G T C G T A A C G T A C G T A C G T A C G T A C G T
C A T G G T A C G T C A C G T A A T G C G T A C A C G T G T A C C G T A A C G T C G A T C G T A C G A T A T C G C G A T C A G T A G C T

PB0201.1_Zfp281_2/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GRARWCTCYCTA----
AGGAGACCCCCAATTTG
A C G T A C T G C T G A C G T A C T A G C G T A A G T C A C G T A G T C A G T C G T A C A C G T C G T A A C G T A C G T A C G T A C G T
C G T A C A T G C A T G C G T A C A T G C T G A T G A C G T A C T A G C A G T C G T A C G C T A G C T A C G A T C G A T C G A T T C A G