Information for 3-TTTRGTAT (Motif 33)

G C A T C A G T C A G T C T A G C A T G A C G T C G T A C G A T
Reverse Opposite:
C G T A G C A T T G C A G T A C G A T C G T C A G T C A C G T A
p-value:1e-2
log p-value:-6.548e+00
Information Content per bp:1.607
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif60.00%
Number of Background Sequences with motif16113.6
Percentage of Background Sequences with motif21.64%
Average Position of motif in Targets118.6 +/- 51.3bp
Average Position of motif in Background99.7 +/- 72.3bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.56
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0119.1_Foxa2_2/Jaspar

Match Rank:1
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TTTRGTAT----
NCNTTTGTTATTTNN
A C G T A C G T A C G T G C A T C A G T C A G T C T A G C A T G A C G T C G T A C G A T A C G T A C G T A C G T A C G T
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T

PB0148.1_Mtf1_2/Jaspar

Match Rank:2
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TTTRGTAT--
NNTTTTTCTTATNT
A C G T A C G T A C G T A C G T G C A T C A G T C A G T C T A G C A T G A C G T C G T A C G A T A C G T A C G T
A C T G G C A T A C G T C G A T C G A T C G A T C A G T G T A C C G A T C G A T G T C A C G A T G C A T C A G T

PB0106.1_Arid5a_2/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TTTRGTAT------
TNNTTTCGTATTNNANN
A C G T A C G T A C G T G C A T C A G T C A G T C T A G C A T G A C G T C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G C T T C G A G C A T G A C T G A C T A T G C A T C G A C G T T G C A A C G T C G A T A C T G G C A T C T G A G A C T T A C G

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TTTRGTAT-
NNHTGTGGTTWN
A C G T A C G T A C G T G C A T C A G T C A G T C T A G C A T G A C G T C G T A C G A T A C G T
C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TTTRGTAT-
CTGTGGTTTN
A C G T G C A T C A G T C A G T C T A G C A T G A C G T C G T A C G A T A C G T
G A T C A C G T A C T G A G C T A C T G A C T G A G C T A G C T C G A T A T C G

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TTTRGTAT
GCTGTGGTTT
A C G T A C G T G C A T C A G T C A G T C T A G C A T G A C G T C G T A C G A T
A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T

RUNX1/MA0002.2/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TTTRGTAT
GTCTGTGGTTT
A C G T A C G T A C G T G C A T C A G T C A G T C T A G C A T G A C G T C G T A C G A T
A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T

PH0165.1_Six6_1/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TTTRGTAT-------
AATAGGGTATCAATTAT
A C G T A C G T G C A T C A G T C A G T C T A G C A T G A C G T C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A G C T A C G A T T C G A T C A G A C T G T C A G A C G T C T G A A C G T G A T C C G T A G T C A C G A T G C A T G C T A A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TTTRGTAT
NNTGTGGTTT
A C G T A C G T G C A T C A G T C A G T C T A G C A T G A C G T C G T A C G A T
A C G T G A C T C A G T A C T G G A C T A C T G A C T G A G C T A G C T C G A T

PH0161.1_Six1/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TTTRGTAT-------
GATGGGGTATCATTTTT
A C G T A C G T G C A T C A G T C A G T C T A G C A T G A C G T C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G G C T A C A G T T C A G C T A G A T C G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C A G T G C A T A C G T C A G T