Information for 3-AGCATTGCTT (Motif 11)

C T G A A T C G G T A C G T C A G C A T C G A T A T C G T G A C G A C T A C G T
Reverse Opposite:
T G C A C T G A A C T G A T G C C G T A C G T A A C G T C A T G T A G C A G C T
p-value:1e-9
log p-value:-2.090e+01
Information Content per bp:1.688
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif5.03%
Number of Background Sequences with motif724.6
Percentage of Background Sequences with motif1.51%
Average Position of motif in Targets86.6 +/- 54.7bp
Average Position of motif in Background100.3 +/- 59.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:1
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:AGCATTGCTT---
---ATTGATTYND
C T G A A T C G G T A C G T C A G C A T C G A T A T C G T G A C G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.70
Offset:1
Orientation:forward strand
Alignment:AGCATTGCTT-
-CCATTGTTYB
C T G A A T C G G T A C G T C A G C A T C G A T A T C G T G A C G A C T A C G T A C G T
A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

SOX9/MA0077.1/Jaspar

Match Rank:3
Score:0.69
Offset:1
Orientation:forward strand
Alignment:AGCATTGCTT
-CCATTGTTC
C T G A A T C G G T A C G T C A G C A T C G A T A T C G T G A C G A C T A C G T
A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer

Match Rank:4
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:AGCATTGCTT---
-CCATTGTTYYBB
C T G A A T C G G T A C G T C A G C A T C G A T A T C G T G A C G A C T A C G T A C G T A C G T A C G T
A C G T A T G C G A T C C G T A A C G T A C G T A C T G A C G T A G C T A G C T A G T C A T C G A C T G

SOX13/MA1120.1/Jaspar

Match Rank:5
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-AGCATTGCTT
NNCCATTGTNN
A C G T C T G A A T C G G T A C G T C A G C A T C G A T A T C G T G A C G A C T A C G T
C G A T A C T G A G T C G A T C C G T A G A C T C G A T T C A G G A C T A G C T G A C T

Sox5/MA0087.1/Jaspar

Match Rank:6
Score:0.66
Offset:3
Orientation:forward strand
Alignment:AGCATTGCTT
---ATTGTTA
C T G A A T C G G T A C G T C A G C A T C G A T A T C G T G A C G A C T A C G T
A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AGCATTGCTT
NCCATTGTTY
C T G A A T C G G T A C G T C A G C A T C G A T A T C G T G A C G A C T A C G T
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.66
Offset:1
Orientation:forward strand
Alignment:AGCATTGCTT-
-CCATTGTTTT
C T G A A T C G G T A C G T C A G C A T C G A T A T C G T G A C G A C T A C G T A C G T
A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

SOX2/MA0143.4/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AGCATTGCTT
NNCCATTGTNN
A C G T C T G A A T C G G T A C G T C A G C A T C G A T A T C G T G A C G A C T A C G T
C G A T G C A T G A T C G A T C G C T A A G C T C G A T C T A G C G A T G C A T G C A T

SOX8/MA0868.2/Jaspar

Match Rank:10
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AGCATTGCTT-
-CCATTGTTCT
C T G A A T C G G T A C G T C A G C A T C G A T A T C G T G A C G A C T A C G T A C G T
A C G T A T G C G A T C C G T A C A G T C G A T T C A G C G A T G A C T G A T C A C G T