Information for 6-RGTGATTGGACA (Motif 11)

C T G A C A T G A C G T A C T G C G T A A G C T A C G T A C T G C T A G C G T A G T A C C G T A
Reverse Opposite:
A C G T A C T G C G A T A G T C A G T C C G T A C T G A A C G T A G T C C G T A G A T C A G C T
p-value:1e-8
log p-value:-1.876e+01
Information Content per bp:1.846
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets100.5 +/- 41.3bp
Average Position of motif in Background88.6 +/- 57.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFYC/MA1644.1/Jaspar

Match Rank:1
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:RGTGATTGGACA
NCTGATTGGNN-
C T G A C A T G A C G T A C T G C G T A A G C T A C G T A C T G C T A G C G T A G T A C C G T A
A C G T A T G C A G C T A T C G C T G A A G C T C G A T C A T G T C A G G A T C A G C T A C G T

NFYA/MA0060.3/Jaspar

Match Rank:2
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:RGTGATTGGACA
NCTGATTGGNN-
C T G A C A T G A C G T A C T G C G T A A G C T A C G T A C T G C T A G C G T A G T A C C G T A
A C G T A T G C A G C T A T C G C T G A A G C T C G A T C T A G T C A G G A C T A G C T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:RGTGATTGGACA--
--TGATTGGCTANN
C T G A C A T G A C G T A C T G C G T A A G C T A C G T A C T G C T A G C G T A G T A C C G T A A C G T A C G T
A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

Dux/MA0611.1/Jaspar

Match Rank:4
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:RGTGATTGGACA
-TTGATTGN---
C T G A C A T G A C G T A C T G C G T A A G C T A C G T A C T G C T A G C G T A G T A C C G T A
A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G A C G T A C G T A C G T

MSANTD3/MA1523.1/Jaspar

Match Rank:5
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:RGTGATTGGACA
-GTGAGTGNAC-
C T G A C A T G A C G T A C T G C G T A A G C T A C G T A C T G C T A G C G T A G T A C C G T A
A C G T C A T G C A G T C T A G C G T A C T A G G C A T C T A G A C G T T G C A T A G C A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:6
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:RGTGATTGGACA
-CCGATTGGCT-
C T G A C A T G A C G T A C T G C G T A A G C T A C G T A C T G C T A G C G T A G T A C C G T A
A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T

PH0026.1_Duxbl/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----RGTGATTGGACA-
NNNNGTTGATTGGGTCG
A C G T A C G T A C G T A C G T C T G A C A T G A C G T A C T G C G T A A G C T A C G T A C T G C T A G C G T A G T A C C G T A A C G T
A T G C C G T A A G T C A G T C T C A G G A C T C G A T C T A G C T G A A C G T A C G T C T A G T C A G T C A G G A C T G A T C T C A G

GFI1/MA0038.2/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---RGTGATTGGACA
TGCAGTGATTTN---
A C G T A C G T A C G T C T G A C A T G A C G T A C T G C G T A A G C T A C G T A C T G C T A G C G T A G T A C C G T A
C A G T C T A G G A T C G T C A A T C G C G A T C A T G C G T A C G A T A C G T A C G T T C A G A C G T A C G T A C G T

NKX2-2/MA1645.1/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--RGTGATTGGACA
NNNTTGAGTGGNNN
A C G T A C G T C T G A C A T G A C G T A C T G C G T A A G C T A C G T A C T G C T A G C G T A G T A C C G T A
C G A T C G A T A G T C A G C T C A G T T A C G C G T A C A T G C G A T C T A G A C T G G C A T C G A T C T G A

NFYB/MA0502.2/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:RGTGATTGGACA-
-CTCATTGGCCAG
C T G A C A T G A C G T A C T G C G T A A G C T A C G T A C T G C T A G C G T A G T A C C G T A A C G T
A C G T A T G C A G C T A T G C G C T A A G C T C A G T C A T G C T A G A G T C G A T C T G C A T C A G