Information for 13-ACAAAACACTCC (Motif 26)

C G T A A G T C C G T A C G T A C G T A C G T A A G T C C G T A A G T C A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C T G A C G T
p-value:1e-3
log p-value:-7.714e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif7.14%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.0 +/- 0.0bp
Average Position of motif in Background143.5 +/- 36.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0121.1_Foxj3_2/Jaspar

Match Rank:1
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----ACAAAACACTCC-
AACACCAAAACAAAGGA
A C G T A C G T A C G T A C G T C G T A A G T C C G T A C G T A C G T A C G T A A G T C C G T A A G T C A C G T A G T C A G T C A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

PB0141.1_Isgf3g_2/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ACAAAACACTCC--
GCAAAACATTACTA
C G T A A G T C C G T A C G T A C G T A C G T A A G T C C G T A A G T C A C G T A G T C A G T C A C G T A C G T
A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A

GFI1/MA0038.2/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:forward strand
Alignment:ACAAAACACTCC-
-CAAATCACTGCA
C G T A A G T C C G T A C G T A C G T A C G T A A G T C C G T A A G T C A C G T A G T C A G T C A C G T
A C G T A G T C T G C A G T C A C G T A A C G T G T A C C G T A T A G C C A G T C T A G G A T C G T C A

Foxd3/MA0041.1/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-ACAAAACACTCC
AAACAAACATTC-
A C G T C G T A A G T C C G T A C G T A C G T A C G T A A G T C C G T A A G T C A C G T A G T C A G T C
C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:5
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:ACAAAACACTCC-
---MRSCACTYAA
C G T A A G T C C G T A C G T A C G T A C G T A A G T C C G T A A G T C A C G T A G T C A G T C A C G T
A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:ACAAAACACTCC
ACAAAGGNBCCT
C G T A A G T C C G T A C G T A C G T A C G T A A G T C C G T A A G T C A C G T A G T C A G T C
G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

RREB1/MA0073.1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--ACAAAACACTCC------
CCCCAAACCACCCCCCCCCA
A C G T A C G T C G T A A G T C C G T A C G T A C G T A C G T A A G T C C G T A A G T C A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G T A C G T A C G T A C A G T C G T C A G T C A G T C A G T A C A G T C C G T A G T A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C T A G C T G A C

TEAD2/MA1121.1/Jaspar

Match Rank:8
Score:0.58
Offset:3
Orientation:forward strand
Alignment:ACAAAACACTCC----
---TCACATTCCAGCC
C G T A A G T C C G T A C G T A C G T A C G T A A G T C C G T A A G T C A C G T A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T G A T C T C G A T G A C C T G A A G C T C G A T A G T C G A T C G C T A C A T G A T G C T A G C

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:ACAAAACACTCC-
---AAGCACTTAA
C G T A A G T C C G T A C G T A C G T A C G T A A G T C C G T A A G T C A C G T A G T C A G T C A C G T
A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.57
Offset:3
Orientation:forward strand
Alignment:ACAAAACACTCC-
---AASCACTCAA
C G T A A G T C C G T A C G T A C G T A C G T A A G T C C G T A A G T C A C G T A G T C A G T C A C G T
A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A