Information for 2-GAGACACATTGG (Motif 3)

A C T G C G T A A C T G C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A C G T A A C G T A C T G A C G T C T A G A C G T A G T C A C G T A G T C
p-value:1e-13
log p-value:-3.176e+01
Information Content per bp:1.969
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets153.5 +/- 32.4bp
Average Position of motif in Background159.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFYB/MA0502.2/Jaspar

Match Rank:1
Score:0.62
Offset:4
Orientation:forward strand
Alignment:GAGACACATTGG----
----CTCATTGGCCAG
A C T G C G T A A C T G C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G C T A T G C G C T A A G C T C A G T C A T G C T A G A G T C G A T C T G C A T C A G

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GAGACACATTGG--
----CCGATTGGCT
A C T G C G T A A C T G C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T

SOX2/MA0143.4/Jaspar

Match Rank:3
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GAGACACATTGG--
---AAACAATGGAA
A C T G C G T A A C T G C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T C G T A C G T A G C T A G A T C G C T A T C G A C G A T C T A G C T A G C G T A G C T A

SOX13/MA1120.1/Jaspar

Match Rank:4
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GAGACACATTGG--
---AAACAATGGCA
A C T G C G T A A C T G C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T C T G A T C G A C T G A A G T C G C T A C T G A G C A T C T A G T C A G T G A C G C T A

PB0168.1_Sox14_2/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GAGACACATTGG---
CTCACACAATGGCGC
A C T G C G T A A C T G C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C T G A C T G A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GAGACACATTGG
VVRRAACAATGG
A C T G C G T A A C T G C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C T G A C T G
T G A C T A G C T C A G T C G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T A C G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GAGACACATTGG
--VRAACAATGG
A C T G C G T A A C T G C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C T G A C T G
A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

DMRT3/MA0610.1/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GAGACACATTGG
NTTGATACATT--
A C G T A C T G C G T A A C T G C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C T G A C T G
C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:9
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GAGACACATTGG-
---RAACAATGGN
A C T G C G T A A C T G C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C T G A C T G A C G T
A C G T A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

PB0117.1_Eomes_2/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GAGACACATTGG-
NNGGCGACACCTCNNN
A C G T A C G T A C G T A C T G C G T A A C T G C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C T G A C T G A C G T
A T C G T C G A T C A G A T C G T G A C C T A G G C T A A G T C C T G A A T G C A G T C G A C T G A T C A G T C T A C G A G T C