Information for 3-RARCTAYAAACY (Motif 4)

C T G A C G T A C T A G G T A C A C G T G T C A A G C T C G T A C G T A C G T A A G T C A G T C
Reverse Opposite:
C T A G A C T G A C G T A C G T A C G T C T G A A C G T C G T A A C T G A G T C A C G T A G C T
p-value:1e-5
log p-value:-1.270e+01
Information Content per bp:1.858
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif185.4
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets76.2 +/- 66.0bp
Average Position of motif in Background106.0 +/- 74.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.2/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:RARCTAYAAACY
AAGCAATAAAAA
C T G A C G T A C T A G G T A C A C G T G T C A A G C T C G T A C G T A C G T A A G T C A G T C
C T G A C G T A C T A G G A T C G T C A C T G A A G C T C G T A C G T A G C T A C G T A G C T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:2
Score:0.63
Offset:1
Orientation:forward strand
Alignment:RARCTAYAAACY-
-NGYCATAAAWCH
C T G A C G T A C T A G G T A C A C G T G T C A A G C T C G T A C G T A C G T A A G T C A G T C A C G T
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

CDX1/MA0878.2/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:forward strand
Alignment:RARCTAYAAACY
-GGCCATAAAAC
C T G A C G T A C T A G G T A C A C G T G T C A A G C T C G T A C G T A C G T A A G T C A G T C
A C G T C A T G C T A G A G T C T G A C C G T A A C G T C T G A C G T A C T G A G T C A A G T C

Foxq1/MA0040.1/Jaspar

Match Rank:4
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:RARCTAYAAACY---
----AATAAACAATN
C T G A C G T A C T A G G T A C A C G T G T C A A G C T C G T A C G T A C G T A A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A T G C A A G C T C G T A C G T A C G T A A G T C C G T A C G T A A G C T C G T A

HOXD13/MA0909.2/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:RARCTAYAAACY
-CCCAATAAAAC
C T G A C G T A C T A G G T A C A C G T G T C A A G C T C G T A C G T A C G T A A G T C A G T C
A C G T T A G C T A G C A G T C G T C A C T G A C G A T C G T A C T G A G T C A T G C A T G A C

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:RARCTAYAAACY-
-WWATRTAAACAN
C T G A C G T A C T A G G T A C A C G T G T C A A G C T C G T A C G T A C G T A A G T C A G T C A C G T
A C G T G C A T G C A T C T G A A C G T C T G A A C G T C G T A C G T A C G T A A G T C G T C A G T C A

CDX4/MA1473.1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:RARCTAYAAACY
-GGCAATAAAAC
C T G A C G T A C T A G G T A C A C G T G T C A A G C T C G T A C G T A C G T A A G T C A G T C
A C G T C A T G T C A G A G T C T G C A C G T A A C G T C G T A C G T A G T C A G T C A A G T C

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:8
Score:0.59
Offset:2
Orientation:forward strand
Alignment:RARCTAYAAACY--
--WWTRTAAACAVG
C T G A C G T A C T A G G T A C A C G T G T C A A G C T C G T A C G T A C G T A A G T C A G T C A C G T A C G T
A C G T A C G T C G T A G C T A C G A T C T A G A C G T G T C A C G T A C G T A A G T C C G T A T G C A T A C G

PH0064.1_Hoxb9/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-RARCTAYAAACY---
AGAGCCATAAAATTCG
A C G T C T G A C G T A C T A G G T A C A C G T G T C A A G C T C G T A C G T A C G T A A G T C A G T C A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

HOXA13/MA0650.2/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:RARCTAYAAACY
-CCCAATAAAAC
C T G A C G T A C T A G G T A C A C G T G T C A A G C T C G T A C G T A C G T A A G T C A G T C
A C G T T G A C T A G C A G T C G T C A C G T A A C G T C T G A C T G A C G T A G T C A G T A C