Information for 2-GGACCTAATTAG (Motif 2)

A C T G A C T G C G T A A G T C A G T C A C G T G T C A G T C A A C G T A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A C G T A A C G T A C G T C G T A A C T G A C T G A C G T A G T C A G T C
p-value:1e-16
log p-value:-3.697e+01
Information Content per bp:1.954
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets94.3 +/- 59.5bp
Average Position of motif in Background128.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer

Match Rank:1
Score:0.76
Offset:4
Orientation:reverse strand
Alignment:GGACCTAATTAG--
----CTAATTAGCN
A C T G A C T G C G T A A G T C A G T C A C G T G T C A G T C A A C G T A C G T C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G A C T T G C A C T G A G A C T A C G T C T G A T C A G A T G C T A C G

PH0058.1_Hoxb3/Jaspar

Match Rank:2
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GGACCTAATTAG-----
TGAGCTAATTAGTTGGA
A C T G A C T G C G T A A G T C A G T C A C G T G T C A G T C A A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
C G A T T C A G T G C A T A C G A T G C G A C T G T C A C G T A C G A T A C G T C T G A T A C G A G C T C A G T T C A G C T A G C G T A

PAX4/MA0068.2/Jaspar

Match Rank:3
Score:0.74
Offset:4
Orientation:reverse strand
Alignment:GGACCTAATTAG
----CTAATTAG
A C T G A C T G C G T A A G T C A G T C A C G T G T C A G T C A A C G T A C G T C G T A A C T G
A C G T A C G T A C G T A C G T A G T C C A G T C G T A G T C A A C G T C G A T G T C A T C A G

PH0175.1_Vax2/Jaspar

Match Rank:4
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:GGACCTAATTAG-----
-GNCTTAATTAGTGNNN
A C T G A C T G C G T A A G T C A G T C A C G T G T C A G T C A A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C T G A G C T T G A C A G C T G A C T G T C A C G T A C G A T A C G T C T G A T C A G A G C T T A C G A G T C G C T A T G A C

VSX2/MA0726.1/Jaspar

Match Rank:5
Score:0.73
Offset:4
Orientation:reverse strand
Alignment:GGACCTAATTAG
----NTAATTAG
A C T G A C T G C G T A A G T C A G T C A C G T G T C A G T C A A C G T A C G T C G T A A C T G
A C G T A C G T A C G T A C G T T G A C G A C T C G T A C T G A A C G T C G A T C T G A T C A G

PH0154.1_Prrx1/Jaspar

Match Rank:6
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-GGACCTAATTAG----
ANNAGTTAATTAGTTAN
A C G T A C T G A C T G C G T A A G T C A G T C A C G T G T C A G T C A A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T
T C G A A T C G G A C T G T C A T C A G A G C T G A C T C T G A C T G A A G C T A C G T C T G A C T A G A G C T C A G T T G C A A T G C

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:7
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:GGACCTAATTAG
---NCTAATTA-
A C T G A C T G C G T A A G T C A G T C A C G T G T C A G T C A A C G T A C G T C G T A A C T G
A C G T A C G T A C G T T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T

PH0034.1_Gbx2/Jaspar

Match Rank:8
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GGACCTAATTAG-----
AGCGCTAATTAGCGATT
A C T G A C T G C G T A A G T C A G T C A C G T G T C A G T C A A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
C G T A T A C G T G A C T C A G A T G C A G C T G T C A G C T A C A G T A C G T C T G A T A C G A G T C T A C G C T G A A C G T C A G T

LHX6/MA0658.1/Jaspar

Match Rank:9
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:GGACCTAATTAG-
---NCTAATTAGT
A C T G A C T G C G T A A G T C A G T C A C G T G T C A G T C A A C G T A C G T C G T A A C T G A C G T
A C G T A C G T A C G T T C A G A G T C G A C T T C G A T C G A A C G T A G C T T C G A T C A G A G C T

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:10
Score:0.72
Offset:2
Orientation:forward strand
Alignment:GGACCTAATTAG
--ADBTAATTAR
A C T G A C T G C G T A A G T C A G T C A C G T G T C A G T C A A C G T A C G T C G T A A C T G
A C G T A C G T C G T A C G T A A G C T G A C T T G C A G T C A A C G T A G C T C T G A T C A G