Information for 22-TTTGTAGGGCAG (Motif 29)

A C G T A C G T A C G T A C T G A C G T C G T A A C T G A C T G A C T G A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A G T C A G T C A G T C A C G T C G T A A G T C C G T A C G T A C G T A
p-value:1e-3
log p-value:-8.363e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets72.0 +/- 0.0bp
Average Position of motif in Background152.0 +/- 51.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TTTGTAGGGCAG---
AAWCTAGGTCARDNN
A C G T A C G T A C G T A C T G A C G T C G T A A C T G A C T G A C T G A G T C C G T A A C T G A C G T A C G T A C G T
C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A

RORC/MA1151.1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TTTGTAGGGCAG
ATAAGTAGGTCA-
A C G T A C G T A C G T A C G T A C T G A C G T C G T A A C T G A C T G A C T G A G T C C G T A A C T G
C T G A C G A T G C T A C G T A A C T G A C G T T C G A C A T G C T A G A C G T A G T C C T G A A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TTTGTAGGGCAG----
NNNNTTGGGCACNNCN
A C G T A C G T A C G T A C T G A C G T C G T A A C T G A C T G A C T G A G T C C G T A A C T G A C G T A C G T A C G T A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

THAP1/MA0597.1/Jaspar

Match Rank:4
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:TTTGTAGGGCAG
---TNNGGGCAG
A C G T A C G T A C G T A C T G A C G T C G T A A C T G A C T G A C T G A G T C C G T A A C T G
A C G T A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TTTGTAGGGCAG
TTTTATKRGG---
A C G T A C G T A C G T A C G T A C T G A C G T C G T A A C T G A C T G A C T G A G T C C G T A A C T G
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TTTGTAGGGCAG
TATAAGTAGGTCAA
A C G T A C G T A C G T A C G T A C G T A C T G A C G T C G T A A C T G A C T G A C T G A G T C C G T A A C T G
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

E2F8/MA0865.1/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TTTGTAGGGCAG
TTTGGCGGGAAA
A C G T A C G T A C G T A C T G A C G T C G T A A C T G A C T G A C T G A G T C C G T A A C T G
C G A T A C G T A G C T A T C G C T A G A T G C A T C G C T A G C T A G G T C A C T G A C G T A

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TTTGTAGGGCAG
-ATCAAGGTCA-
A C G T A C G T A C G T A C T G A C G T C G T A A C T G A C T G A C T G A G T C C G T A A C T G
A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T

NR1D1/MA1531.1/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---TTTGTAGGGCAG
GGGTCAGTAGGTCAG
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T C G T A A C T G A C T G A C T G A G T C C G T A A C T G
T C A G C A T G C T A G A C G T A G T C C G T A T A C G A C G T T C G A A C T G C T A G A C G T A G T C C T G A C T A G

E2F7/MA0758.1/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TTTGTAGGGCAG-
TTTTGGCGGGAAAA
A C G T A C G T A C G T A C G T A C T G A C G T C G T A A C T G A C T G A C T G A G T C C G T A A C T G A C G T
C G A T C G A T G C A T C G A T T A C G A C T G A G T C A C T G A T C G A T C G C T G A C T G A G C T A G C T A