Information for 1-AACTCCTGATGG (Motif 3)

C G T A C G T A A G T C A C G T A G T C A G T C A C G T A C T G C G T A A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A A C G T A G T C C G T A A C T G A C T G C G T A A C T G A C G T A C G T
p-value:1e-4
log p-value:-1.099e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets6.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:1
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AACTCCTGATGG-
--NNCCTGCTGNG
C G T A C G T A A G T C A C G T A G T C A G T C A C G T A C T G C G T A A C G T A C T G A C T G A C G T
A C G T A C G T A G T C A T G C T G A C T A G C A G C T T C A G A T G C A C G T T C A G A G C T A T C G

Isl1/MA1608.1/Jaspar

Match Rank:2
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:AACTCCTGATGG--
---NNCTAATGGNN
C G T A C G T A A G T C A C G T A G T C A G T C A C G T A C T G C G T A A C G T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T T C A G G A T C C G A T C T G A C G T A G A C T C A T G C T A G T G C A G A C T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AACTCCTGATGG-
-CCCCCTGCTGTG
C G T A C G T A A G T C A C G T A G T C A G T C A C G T A C T G C G T A A C G T A C T G A C T G A C G T
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

SREBF1(var.2)/MA0829.2/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AACTCCTGATGG
AGATCACCTGATCT
A C G T A C G T C G T A C G T A A G T C A C G T A G T C A G T C A C G T A C T G C G T A A C G T A C T G A C T G
C T G A T C A G T C G A G C A T A T G C G C T A A T G C T A G C G C A T A T C G G C T A A G C T A G T C G A C T

TWIST1/MA1123.2/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AACTCCTGATGG--
-ATTCCAGATGTTT
C G T A C G T A A G T C A C G T A G T C A G T C A C G T A C T G C G T A A C G T A C T G A C T G A C G T A C G T
A C G T C G T A C G A T C G A T T G A C G T A C C G T A A C T G T G C A G A C T A C T G A C G T A G C T G C A T

FIGLA/MA0820.1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AACTCCTGATGG
ACCACCTGTT--
C G T A C G T A A G T C A C G T A G T C A G T C A C G T A C T G C G T A A C G T A C T G A C T G
G C T A G T A C A G T C G T C A A T G C T A G C C G A T C A T G A C G T C G A T A C G T A C G T

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AACTCCTGATGG-----
AAGGCCAGATGGTCCGG
C G T A C G T A A G T C A C G T A G T C A G T C A C G T A C T G C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
G C T A T C G A C T A G C A T G T A G C G T A C C T G A A C T G T C G A C G A T A C T G C A T G A G C T G A T C A T G C A T C G T C A G

TFAP4/MA0691.1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AACTCCTGATGG
AACAGCTGAT--
C G T A C G T A A G T C A C G T A G T C A G T C A C G T A C T G C G T A A C G T A C T G A C T G
T G C A G C T A A G T C G T C A A T C G T A G C G A C T A T C G C G T A A G C T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AACTCCTGATGG--
GGCCYCCTGCTGDGH
A C G T C G T A C G T A A G T C A C G T A G T C A G T C A C G T A C T G C G T A A C G T A C T G A C T G A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AACTCCTGATGG----
-TCNCCTGCTGNGNNN
C G T A C G T A A G T C A C G T A G T C A G T C A C G T A C T G C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G