Information for 18-ACTAGGGCAC (Motif 37)

C G T A A G T C A C G T C G T A A C T G A C T G A C T G A G T C C G T A A G T C
Reverse Opposite:
A C T G A C G T A C T G A G T C A G T C A G T C A C G T C G T A A C T G A C G T
p-value:1e-3
log p-value:-7.110e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif7.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets193.0 +/- 0.0bp
Average Position of motif in Background141.8 +/- 21.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0133.1_Hic1_2/Jaspar

Match Rank:1
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--ACTAGGGCAC----
NNNNTTGGGCACNNCN
A C G T A C G T C G T A A G T C A C G T C G T A A C T G A C T G A C T G A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:2
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--ACTAGGGCAC
WAABTAGGTCAV
A C G T A C G T C G T A A G T C A C G T C G T A A C T G A C T G A C T G A G T C C G T A A G T C
C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G

PB0200.1_Zfp187_2/Jaspar

Match Rank:3
Score:0.70
Offset:-6
Orientation:reverse strand
Alignment:------ACTAGGGCAC
NNAGGGACAAGGGCNC
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T C G T A A C T G A C T G A C T G A G T C C G T A A G T C
A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-ACTAGGGCAC
AAYTAGGTCA-
A C G T C G T A A G T C A C G T C G T A A C T G A C T G A C T G A G T C C G T A A G T C
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-ACTAGGGCAC
AAYTAGGTCA-
A C G T C G T A A G T C A C G T C G T A A C T G A C T G A C T G A G T C C G T A A G T C
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:6
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--ACTAGGGCAC---
AAWCTAGGTCARDNN
A C G T A C G T C G T A A G T C A C G T C G T A A C T G A C T G A C T G A G T C C G T A A G T C A C G T A C G T A C G T
C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A

RORC/MA1151.1/Jaspar

Match Rank:7
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---ACTAGGGCAC
ATAAGTAGGTCA-
A C G T A C G T A C G T C G T A A G T C A C G T C G T A A C T G A C T G A C T G A G T C C G T A A G T C
C T G A C G A T G C T A C G T A A C T G A C G T T C G A C A T G C T A G A C G T A G T C C T G A A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:8
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----ACTAGGGCAC
TATAAGTAGGTCAA
A C G T A C G T A C G T A C G T C G T A A G T C A C G T C G T A A C T G A C T G A C T G A G T C C G T A A G T C
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:9
Score:0.63
Offset:1
Orientation:forward strand
Alignment:ACTAGGGCAC-
-CAAGGHCANV
C G T A A G T C A C G T C G T A A C T G A C T G A C T G A G T C C G T A A G T C A C G T
A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

RORB/MA1150.1/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-ACTAGGGCAC
AATTAGGTCAC
A C G T C G T A A G T C A C G T C G T A A C T G A C T G A C T G A G T C C G T A A G T C
C G T A G C T A C G A T A C G T C T G A A C T G C T A G A G C T G A T C C T G A G A T C