Information for 2-CAAGACAGTATG (Motif 3)

A G T C G T C A C G T A A C T G G T C A A G T C C G T A A C T G C G A T C G T A A C G T A C T G
Reverse Opposite:
A G T C C G T A A C G T C G T A A G T C A C G T A C T G A C G T A G T C A C G T A C G T A C T G
p-value:1e-8
log p-value:-1.903e+01
Information Content per bp:1.945
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif27.27%
Number of Background Sequences with motif28.2
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets100.3 +/- 6.9bp
Average Position of motif in Background91.0 +/- 98.9bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CAAGACAGTATG
CCAGACAG----
A G T C G T C A C G T A A C T G G T C A A G T C C G T A A C T G C G A T C G T A A C G T A C T G
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

Smad4/MA1153.1/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CAAGACAGTATG
TCTAGACA-----
A C G T A G T C G T C A C G T A A C T G G T C A A G T C C G T A A C T G C G A T C G T A A C G T A C T G
A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CAAGACAGTATG
CAAATCCAGACATCACA
A C G T A C G T A C G T A C G T A C G T A G T C G T C A C G T A A C T G G T C A A G T C C G T A A C T G C G A T C G T A A C G T A C T G
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

ZKSCAN1/MA1585.1/Jaspar

Match Rank:4
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CAAGACAGTATG--
----ATAGTAGGTG
A G T C G T C A C G T A A C T G G T C A A G T C C G T A A C T G C G A T C G T A A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T T C G A A G C T T G C A C T A G A C G T G T C A A T C G C A T G A G C T T A C G

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CAAGACAGTATG---
CCACACAGCAGGAGA
A G T C G T C A C G T A A C T G G T C A A G T C C G T A A C T G C G A T C G T A A C G T A C T G A C G T A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CAAGACAGTATG---
GAGCACAGCAGGACA
A G T C G T C A C G T A A C T G G T C A A G T C C G T A A C T G C G A T C G T A A C G T A C T G A C G T A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CAAGACAGTATG
CCAGACRSVB--
A G T C G T C A C G T A A C T G G T C A A G T C C G T A A C T G C G A T C G T A A C G T A C T G
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

ZBTB32/MA1580.1/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CAAGACAGTATG
-TGTACAGTAT-
A G T C G T C A C G T A A C T G G T C A A G T C C G T A A C T G C G A T C G T A A C G T A C T G
A C G T G C A T C T A G C G A T G T C A A T G C C G T A A C T G A G C T C T G A C G A T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CAAGACAGTATG---
CCACACAGCAGGAGA
A G T C G T C A C G T A A C T G G T C A A G T C C G T A A C T G C G A T C G T A A C G T A C T G A C G T A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CAAGACAGTATG---
VAGRACAKWCTGTYC
A G T C G T C A C G T A A C T G G T C A A G T C C G T A A C T G C G A T C G T A A C G T A C T G A C G T A C G T A C G T
T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C