Information for 7-SWGAMWAMCMKG (Motif 8)

A T G C G C A T A T C G G T C A G T A C C G A T G T C A G T C A A G T C G T A C C A G T A T C G
Reverse Opposite:
A T G C G T C A A C T G C T A G A C G T A C G T C G T A A C T G A C G T A T G C C G T A A T C G
p-value:1e-5
log p-value:-1.282e+01
Information Content per bp:1.747
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif18.75%
Number of Background Sequences with motif108.8
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets74.3 +/- 25.9bp
Average Position of motif in Background96.7 +/- 67.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Prdm15/MA1616.1/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:SWGAMWAMCMKG---
AGGAAAACCTGGAGC
A T G C G C A T A T C G G T C A G T A C C G A T G T C A G T C A A G T C G T A C C A G T A T C G A C G T A C G T A C G T
C T G A C T A G A C T G T C G A T C G A C T G A C T G A A G T C T G A C G A C T C T A G C T A G T G C A T C A G G A T C

GRHL1/MA0647.1/Jaspar

Match Rank:2
Score:0.56
Offset:4
Orientation:forward strand
Alignment:SWGAMWAMCMKG----
----AAAACCGGTTTT
A T G C G C A T A T C G G T C A G T A C C G A T G T C A G T C A A G T C G T A C C A G T A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T C A C G T A C T G A C G T A A G T C G T A C C T A G A T C G G C A T G A C T G C A T C G A T

PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer

Match Rank:3
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:SWGAMWAMCMKG------
---AAAACCTGGANHGGR
A T G C G C A T A T C G G T C A G T A C C G A T G T C A G T C A A G T C G T A C C A G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C T G A T C G A T C G A A G T C T G A C G A C T A C T G C T A G G T C A T A G C G C A T T C A G C T A G T C A G

TFCP2/MA0145.3/Jaspar

Match Rank:4
Score:0.55
Offset:5
Orientation:forward strand
Alignment:SWGAMWAMCMKG---
-----AAACCGGTTT
A T G C G C A T A T C G G T C A G T A C C G A T G T C A G T C A A G T C G T A C C A G T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A C G T A C G T A T A G C G A T C C T A G A T C G G C A T G A C T G A C T

PBX3/MA1114.1/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--SWGAMWAMCMKG---
GGGTGAGTGACAGGCGG
A C G T A C G T A T G C G C A T A T C G G T C A G T A C C G A T G T C A G T C A A G T C G T A C C A G T A T C G A C G T A C G T A C G T
T A C G A C T G A C T G C G A T T C A G C G T A A C T G C A G T T A C G C T G A T A G C C T G A A C T G T A C G A T G C T C A G A T C G

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---SWGAMWAMCMKG--
CATAAGACCACCATTAC
A C G T A C G T A C G T A T G C G C A T A T C G G T C A G T A C C G A T G T C A G T C A A G T C G T A C C A G T A T C G A C G T A C G T
A G T C C G A T C A G T C T G A T G C A A C T G G T C A G A T C A T G C G T C A G A T C G A T C G C T A A C G T C A G T C T G A A G C T

GRHL2/MA1105.2/Jaspar

Match Rank:7
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:SWGAMWAMCMKG----
----NAAACCTGTTTN
A T G C G C A T A T C G G T C A G T A C C G A T G T C A G T C A A G T C G T A C C A G T A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T C A T C G A C T G A C T G A A T G C G A T C C G A T A T C G G A C T G A C T A G C T A C G T

GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer

Match Rank:8
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----SWGAMWAMCMKG---
VAAACYKGTHWAACMRGTTT
A C G T A C G T A C G T A C G T A C G T A T G C G C A T A T C G G T C A G T A C C G A T G T C A G T C A A G T C G T A C C A G T A T C G A C G T A C G T A C G T
T C G A C T G A C T G A C G T A T A G C G A C T C A T G T C A G G C A T G C A T C G T A C T G A C T G A A G T C G T A C C T A G A T C G G A C T G A C T A G C T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:SWGAMWAMCMKG-
-TGAGTGACAGSC
A T G C G C A T A T C G G T C A G T A C C G A T G T C A G T C A A G T C G T A C C A G T A T C G A C G T
A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:SWGAMWAMCMKG
NTGATTGACAGN
A T G C G C A T A T C G G T C A G T A C C G A T G T C A G T C A A G T C G T A C C A G T A T C G
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G