Information for 17-ATAGTCAGAC (Motif 35)

C G T A A C G T C G T A A C T G A C G T A G T C C G T A A C T G C G T A A G T C
Reverse Opposite:
A C T G A C G T A G T C A C G T A C T G C G T A A G T C A C G T C G T A A C G T
p-value:1e-3
log p-value:-7.038e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif54.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets187.0 +/- 0.0bp
Average Position of motif in Background103.3 +/- 126.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-ATAGTCAGAC------
CAAATCCAGACATCACA
A C G T C G T A A C G T C G T A A C T G A C G T A G T C C G T A A C T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:ATAGTCAGAC--
----BCAGACWA
C G T A A C G T C G T A A C T G A C G T A G T C C G T A A C T G C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:ATAGTCAGAC--
----CCAGACAG
C G T A A C G T C G T A A C T G A C G T A G T C C G T A A C T G C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:ATAGTCAGAC----
----CCAGACRSVB
C G T A A C G T C G T A A C T G A C G T A G T C C G T A A C T G C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-ATAGTCAGAC-
AGGTGHCAGACA
A C G T C G T A A C G T C G T A A C T G A C G T A G T C C G T A A C T G C G T A A G T C A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

Nr2e1/MA0676.1/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-ATAGTCAGAC
AAAAGTCAA--
A C G T C G T A A C G T C G T A A C T G A C G T A G T C C G T A A C T G C G T A A G T C
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:ATAGTCAGAC-
-ATGCCAGACN
C G T A A C G T C G T A A C T G A C G T A G T C C G T A A C T G C G T A A G T C A C G T
A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer

Match Rank:8
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---ATAGTCAGAC
CYWSTGGTCARA-
A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C G T A G T C C G T A A C T G C G T A A G T C
G A T C G A C T C G T A T A G C C G A T A C T G A C T G G A C T T G A C C G T A T C A G C T G A A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-ATAGTCAGAC--
AGGTGNCAGACAG
A C G T C G T A A C G T C G T A A C T G A C G T A G T C C G T A A C T G C G T A A G T C A C G T A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

POL002.1_INR/Jaspar

Match Rank:10
Score:0.54
Offset:4
Orientation:forward strand
Alignment:ATAGTCAGAC--
----TCAGTCTT
C G T A A C G T C G T A A C T G A C G T A G T C C G T A A C T G C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T