Information for 4-GCTGCCAAAGCA (Motif 6)

A C T G A G T C A C G T A C T G A G T C A G T C C G T A C G T A C G T A A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C T G A G T C
p-value:1e-4
log p-value:-9.307e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets31.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCTGCCAAAGCA
GGTGCCAAGT--
A C T G A G T C A C G T A C T G A G T C A G T C C G T A C G T A C G T A A C T G A G T C C G T A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCTGCCAAAGCA
CGTGCCAAG---
A C T G A G T C A C G T A C T G A G T C A G T C C G T A C G T A C G T A A C T G A G T C C G T A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

MAFA/MA1521.1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GCTGCCAAAGCA-
NTGCTGACTCAGCAN
A C G T A C G T A C T G A G T C A C G T A C T G A G T C A G T C C G T A C G T A C G T A A C T G A G T C C G T A A C G T
C G A T G A C T T C A G G T A C G C A T C A T G G T C A T A G C C A G T G T A C C T G A C A T G A G T C C T G A G C T A

MAF/MA1520.1/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GCTGCCAAAGCA-
NTGCTGACTCAGCAN
A C G T A C G T A C T G A G T C A C G T A C T G A G T C A G T C C G T A C G T A C G T A A C T G A G T C C G T A A C G T
C G A T G A C T T C A G G T A C G C A T C A T G G C T A A T G C C G A T G T A C C G T A C A T G A G T C C T G A G C A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GCTGCCAAAGCA
-TTGCCAAG---
A C T G A G T C A C G T A C T G A G T C A G T C C G T A C G T A C G T A A C T G A G T C C G T A
A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GCTGCCAAAGCA------
--TGCCAAAATAAACANN
A C T G A G T C A C G T A C T G A G T C A G T C C G T A C G T A C G T A A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

PH0170.1_Tgif2/Jaspar

Match Rank:7
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----GCTGCCAAAGCA
AACTAGCTGTCAATAC-
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C T G A G T C A G T C C G T A C G T A C G T A A C T G A G T C C G T A
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C A C G T

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCTGCCAAAGCA
VGCTGGCA-----
A C G T A C T G A G T C A C G T A C T G A G T C A G T C C G T A C G T A C G T A A C T G A G T C C G T A
T A G C T A C G A T G C C A G T T C A G T A C G G A T C C T G A A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCTGCCAAAGCA
GCTGTCAA----
A C T G A G T C A C G T A C T G A G T C A G T C C G T A C G T A C G T A A C T G A G T C C G T A
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCTGCCAAAGCA-
NGTTGCCATGGCAA
A C G T A C T G A G T C A C G T A C T G A G T C A G T C C G T A C G T A C G T A A C T G A G T C C G T A A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A