Information for 19-GGCTAGGTAC (Motif 33)

A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T C G T A A G T C
Reverse Opposite:
A C T G A C G T C G T A A G T C A G T C A C G T C G T A A C T G A G T C A G T C
p-value:1e-3
log p-value:-7.101e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif86.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets107.0 +/- 0.0bp
Average Position of motif in Background91.7 +/- 185.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0159.1_Rfx4_2/Jaspar

Match Rank:1
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GGCTAGGTAC---
TACCCTAGTTACCGA
A C G T A C G T A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T C G T A A G T C A C G T A C G T A C G T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

HMBOX1/MA0895.1/Jaspar

Match Rank:2
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GGCTAGGTAC-
-ACTAGTTAAC
A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T C G T A A G T C A C G T
A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GGCTAGGTAC-------
TTCNAAGTACTTNNNNN
A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A C G T A G T C T G A C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A T C G T A C G G C T A C A T G A G C T

PH0168.1_Hnf1b/Jaspar

Match Rank:4
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GGCTAGGTAC-----
ANNNCTAGTTAACNGNN
A C G T A C G T A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

POL006.1_BREu/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GGCTAGGTAC
GGCGCGCT--
A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T C G T A A G T C
C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T

PH0040.1_Hmbox1/Jaspar

Match Rank:6
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GGCTAGGTAC----
GAAAACTAGTTAACATC
A C G T A C G T A C G T A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T C G T A A G T C A C G T A C G T A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GGCTAGGTAC--
--CCAGGAACAG
A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T C G T A A G T C A C G T A C G T
A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:8
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GGCTAGGTAC--
--VCAGGTRDRY
A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T C G T A A G T C A C G T A C G T
A C G T A C G T T G C A G T A C C G T A A T C G A C T G A C G T C T A G C G A T T C G A A G T C

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GGCTAGGTAC--
GGTTAGAGACCT
A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T C G T A A G T C A C G T A C G T
C T A G T A C G C G A T A C G T C G T A T C A G C T G A T C A G G T C A T G A C A G T C G A C T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GGCTAGGTAC
TWGTCTGV----
A C G T A C G T A C T G A C T G A G T C A C G T C G T A A C T G A C T G A C G T C G T A A G T C
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T