| p-value: | 1e-3 |
| log p-value: | -8.489e+00 |
| Information Content per bp: | 1.788 |
| Number of Target Sequences with motif | 3.0 |
| Percentage of Target Sequences with motif | 3.00% |
| Number of Background Sequences with motif | 54.1 |
| Percentage of Background Sequences with motif | 0.11% |
| Average Position of motif in Targets | 112.6 +/- 45.5bp |
| Average Position of motif in Background | 94.3 +/- 57.6bp |
| Strand Bias (log2 ratio + to - strand density) | 1.3 |
| Multiplicity (# of sites on avg that occur together) | 2.33 |
| Motif File: | file (matrix) reverse opposite |
| SVG Files for Logos: | forward logo reverse opposite |
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer
| Match Rank: | 1 |
| Score: | 0.71 |
| Offset: | -2 |
| Orientation: | reverse strand |
| Alignment: | --ATCCCTCACK YCATCMATCA-- |
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|
|
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer
| Match Rank: | 2 |
| Score: | 0.67 |
| Offset: | -3 |
| Orientation: | forward strand |
| Alignment: | ---ATCCCTCACK GYCATCMATCAT- |
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|
|
MSANTD3/MA1523.1/Jaspar
| Match Rank: | 3 |
| Score: | 0.64 |
| Offset: | -1 |
| Orientation: | forward strand |
| Alignment: | -ATCCCTCACK GTACACTCAC- |
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|
|
PB0114.1_Egr1_2/Jaspar
| Match Rank: | 4 |
| Score: | 0.63 |
| Offset: | -3 |
| Orientation: | reverse strand |
| Alignment: | ---ATCCCTCACK--- NNAGTCCCACTCNNNN |
|
|
|
NKX2-5/MA0063.2/Jaspar
| Match Rank: | 5 |
| Score: | 0.62 |
| Offset: | 0 |
| Orientation: | forward strand |
| Alignment: | ATCCCTCACK- ACCACTCAAAA |
|
|
|
Nkx2-5(var.2)/MA0503.1/Jaspar
| Match Rank: | 6 |
| Score: | 0.62 |
| Offset: | -1 |
| Orientation: | forward strand |
| Alignment: | -ATCCCTCACK AGCCACTCAAG |
|
|
|
Znf281/MA1630.1/Jaspar
| Match Rank: | 7 |
| Score: | 0.62 |
| Offset: | -1 |
| Orientation: | reverse strand |
| Alignment: | -ATCCCTCACK CCTCCCCCACC |
|
|
|
NKX2-2/MA1645.1/Jaspar
| Match Rank: | 8 |
| Score: | 0.62 |
| Offset: | -2 |
| Orientation: | forward strand |
| Alignment: | --ATCCCTCACK-- TAACCACTCAAGAA |
|
|
|
PH0137.1_Pitx1/Jaspar
| Match Rank: | 9 |
| Score: | 0.61 |
| Offset: | -7 |
| Orientation: | reverse strand |
| Alignment: | -------ATCCCTCACK NTTGTTAATCCCTCTNN |
|
|
|
ZNF75D/MA1601.1/Jaspar
| Match Rank: | 10 |
| Score: | 0.61 |
| Offset: | -1 |
| Orientation: | reverse strand |
| Alignment: | -ATCCCTCACK TTTCCCACAN- |
|
|
|