Information for 3-TCGAATTT (Motif 19)

A C G T A G T C A T C G C G T A C G T A A C G T A C G T A G C T
Reverse Opposite:
C T G A C G T A C G T A A C G T A C G T A T G C A C T G G T C A
p-value:1e-7
log p-value:-1.799e+01
Information Content per bp:1.913
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif2.79%
Number of Background Sequences with motif391.2
Percentage of Background Sequences with motif0.82%
Average Position of motif in Targets121.3 +/- 44.9bp
Average Position of motif in Background95.9 +/- 55.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0136.1_IRC900814_2/Jaspar

Match Rank:1
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----TCGAATTT----
TTTTACGACTTTCCAT
A C G T A C G T A C G T A C G T A C G T A G T C A T C G C G T A C G T A A C G T A C G T A G C T A C G T A C G T A C G T A C G T
C G A T A G C T G C A T A G C T T C G A G A T C C T A G C T G A G T A C C A G T A G C T G A C T G A T C T G A C T C G A G A C T

PAX4/MA0068.2/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TCGAATTT-
-CTAATTAG
A C G T A G T C A T C G C G T A C G T A A C G T A C G T A G C T A C G T
A C G T A G T C C A G T G C T A C G T A A C G T G C A T G T C A T C A G

ALX3/MA0634.1/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TCGAATTT--
TCTAATTAAA
A C G T A G T C A T C G C G T A C G T A A C G T A C G T A G C T A C G T A C G T
G A C T A G T C G A C T C T G A G T C A G C A T G A C T G C T A T C G A T G C A

PB0171.1_Sox18_2/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TCGAATTT-----
NNNNTGAATTCANNNC
A C G T A C G T A C G T A C G T A G T C A T C G C G T A C G T A A C G T A C G T A G C T A C G T A C G T A C G T A C G T A C G T
A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C

VSX1/MA0725.1/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TCGAATTT-
-CTAATTAT
A C G T A G T C A T C G C G T A C G T A A C G T A C G T A G C T A C G T
A C G T G A T C G A C T G T C A T C G A G A C T C A G T C T G A A C G T

VSX2/MA0726.1/Jaspar

Match Rank:6
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TCGAATTT-
-CTAATTAG
A C G T A G T C A T C G C G T A C G T A A C G T A C G T A G C T A C G T
A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G

PB0169.1_Sox15_2/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TCGAATTT-------
TNGAATTTCATTNAN
A C G T A G T C A T C G C G T A C G T A A C G T A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T G C C T A G C T G A G T C A G A C T C A G T G C A T T G A C C T G A C A G T G A C T A G T C T G C A T G C A

LHX9/MA0701.2/Jaspar

Match Rank:8
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TCGAATTT-
-CTAATTAA
A C G T A G T C A T C G C G T A C G T A A C G T A C G T A G C T A C G T
A C G T A G T C A G C T G T C A C G T A A C G T A C G T C T G A T C G A

PB0106.1_Arid5a_2/Jaspar

Match Rank:9
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TCGAATTT----
TNNTTTCGTATTNNANN
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A T C G C G T A C G T A A C G T A C G T A G C T A C G T A C G T A C G T A C G T
A C G T A G C T T C G A G C A T G A C T G A C T A T G C A T C G A C G T T G C A A C G T C G A T A C T G G C A T C T G A G A C T T A C G

PRRX2/MA0075.3/Jaspar

Match Rank:10
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TCGAATTT-
-CTAATTAA
A C G T A G T C A T C G C G T A C G T A A C G T A C G T A G C T A C G T
A C G T A G T C A G C T T G C A C G T A A C G T A C G T T C G A C T G A