Information for 12-TNWAADCCWSTH (Motif 16)

C G A T C A G T G C A T G C T A G C T A C G T A G T A C G A T C G C T A T A G C G C A T G T A C
Reverse Opposite:
C A T G C G T A A T C G C G A T C T A G C A T G G C A T C G A T C G A T C G T A G T C A G C T A
p-value:1e-7
log p-value:-1.774e+01
Information Content per bp:1.497
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif23.7
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets95.3 +/- 36.8bp
Average Position of motif in Background90.4 +/- 44.3bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.38
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Crx/MA0467.1/Jaspar

Match Rank:1
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:TNWAADCCWSTH
-CTAATCCTCTT
C G A T C A G T G C A T G C T A G C T A C G T A G T A C G A T C G C T A T A G C G C A T G T A C
A C G T G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.71
Offset:2
Orientation:forward strand
Alignment:TNWAADCCWSTH
--TAATCCCN--
C G A T C A G T G C A T G C T A G C T A C G T A G T A C G A T C G C T A T A G C G C A T G T A C
A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T A C G T

OTX2/MA0712.2/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TNWAADCCWSTH
NNCTAATCCCNN-
A C G T C G A T C A G T G C A T G C T A G C T A C G T A G T A C G A T C G C T A T A G C G C A T G T A C
G C A T G C A T G A T C G C A T C G T A G T C A C A G T G A T C G A T C G A T C G C A T C G A T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TNWAADCCWSTH
NYTAATCCYB--
C G A T C A G T G C A T G C T A G C T A C G T A G T A C G A T C G C T A T A G C G C A T G T A C
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T A C G T

PITX1/MA0682.2/Jaspar

Match Rank:5
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TNWAADCCWSTH
-CTAATCCC---
C G A T C A G T G C A T G C T A G C T A C G T A G T A C G A T C G C T A T A G C G C A T G T A C
A C G T G A T C A C G T C G T A C G T A A C G T G T A C A G T C G T A C A C G T A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:6
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TNWAADCCWSTH
-YTAATCCY---
C G A T C A G T G C A T G C T A G C T A C G T A G T A C G A T C G C T A T A G C G C A T G T A C
A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:7
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TNWAADCCWSTH
GCTAATCC----
C G A T C A G T G C A T G C T A G C T A C G T A G T A C G A T C G C T A T A G C G C A T G T A C
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TNWAADCCWSTH
CTTAATCCC---
C G A T C A G T G C A T G C T A G C T A C G T A G T A C G A T C G C T A T A G C G C A T G T A C
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T A C G T A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:9
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TNWAADCCWSTH
-ATAATCCC---
C G A T C A G T G C A T G C T A G C T A C G T A G T A C G A T C G C T A T A G C G C A T G T A C
A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T A C G T A C G T

PB0185.1_Tcf1_2/Jaspar

Match Rank:10
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TNWAADCCWSTH--
NNTAATCCNGNCNN
C G A T C A G T G C A T G C T A G C T A C G T A G T A C G A T C G C T A T A G C G C A T G T A C A C G T A C G T
G A T C G T A C G C A T T G C A G T C A G A C T G T A C A G T C T C A G A T C G C T A G A G T C T G C A C G T A