Information for 10-MRGKAAAKGACC (Motif 12)

G T A C C T G A C T A G A C T G C T G A C G T A C G T A A C T G A C T G T C G A A T G C A G T C
Reverse Opposite:
A C T G T A C G A G C T T G A C G T A C G A C T A C G T A G C T G T A C A G T C A G C T A C T G
p-value:1e-4
log p-value:-1.060e+01
Information Content per bp:1.690
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif36.36%
Number of Background Sequences with motif1482.4
Percentage of Background Sequences with motif1.70%
Average Position of motif in Targets87.6 +/- 26.4bp
Average Position of motif in Background101.5 +/- 79.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.68
Offset:2
Orientation:forward strand
Alignment:MRGKAAAKGACC
--GGAAATTCCC
G T A C C T G A C T A G A C T G C T G A C G T A C G T A A C T G A C T G T C G A A T G C A G T C
A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

NR1H4/MA1110.1/Jaspar

Match Rank:2
Score:0.67
Offset:3
Orientation:forward strand
Alignment:MRGKAAAKGACC--
---TCAATGACCTA
G T A C C T G A C T A G A C T G C T G A C G T A C G T A A C T G A C T G T C G A A T G C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A G T C C G T A C T G A A G C T C T A G G T C A G T A C G T A C A G C T G C T A

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:MRGKAAAKGACC--
AGGTCANTGACCTN
G T A C C T G A C T A G A C T G C T G A C G T A C G T A A C T G A C T G T C G A A T G C A G T C A C G T A C G T
T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:MRGKAAAKGACC-
-GGGAAATCCCCN
G T A C C T G A C T A G A C T G C T G A C G T A C G T A A C T G A C T G T C G A A T G C A G T C A C G T
A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

MF0003.1_REL_class/Jaspar

Match Rank:5
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:MRGKAAAKGACC
--GGAAATCCCC
G T A C C T G A C T A G A C T G C T G A C G T A C G T A A C T G A C T G T C G A A T G C A G T C
A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

PB0137.1_Irf3_2/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:MRGKAAAKGACC--
GGAGAAAGGTGCGA
G T A C C T G A C T A G A C T G C T G A C G T A C G T A A C T G A C T G T C G A A T G C A G T C A C G T A C G T
C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

NR1H4::RXRA/MA1146.1/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-MRGKAAAKGACC--
NAGGTCAATGACCTC
A C G T G T A C C T G A C T A G A C T G C T G A C G T A C G T A A C T G A C T G T C G A A T G C A G T C A C G T A C G T
T C G A T C G A C A T G C A T G A C G T A G T C T C G A C G T A G A C T T C A G T G C A G T A C G A T C A G C T A G T C

RELA/MA0107.1/Jaspar

Match Rank:8
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:MRGKAAAKGACC
--GGAAATTCCC
G T A C C T G A C T A G A C T G C T G A C G T A C G T A A C T G A C T G T C G A A T G C A G T C
A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

NR4A2::RXRA/MA1147.1/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-MRGKAAAKGACC--
GGGGTCAATGACCTN
A C G T G T A C C T G A C T A G A C T G C T G A C G T A C G T A A C T G A C T G T C G A A T G C A G T C A C G T A C G T
T C A G T C A G C A T G C A T G A C G T A T G C T C G A G C T A A G C T T C A G T C G A G T A C G T A C A G C T A G T C

NR2F6(var.3)/MA1539.1/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-MRGKAAAKGACC--
AAGGTCANTGACCTT
A C G T G T A C C T G A C T A G A C T G C T G A C G T A C G T A A C T G A C T G T C G A A T G C A G T C A C G T A C G T
C T G A T C G A C A T G C A T G A C G T A G T C T C G A T A C G G A C T T C A G T G C A G T A C G T A C A G C T G A C T