Information for 20-CAAAACAAATCT (Motif 28)

A G T C C G T A C G T A C G T A C G T A A G T C C G T A C G T A C G T A A C G T A G T C A C G T
Reverse Opposite:
C G T A A C T G C G T A A C G T A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C T G
p-value:1e-3
log p-value:-7.918e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif7.69%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets143.0 +/- 0.0bp
Average Position of motif in Background163.2 +/- 33.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0121.1_Foxj3_2/Jaspar

Match Rank:1
Score:0.76
Offset:-5
Orientation:forward strand
Alignment:-----CAAAACAAATCT
AACACCAAAACAAAGGA
A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A C G T A A G T C C G T A C G T A C G T A A C G T A G T C A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

PB0123.1_Foxl1_2/Jaspar

Match Rank:2
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----CAAAACAAATCT
ATATCAAAACAAAACA
A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A C G T A A G T C C G T A C G T A C G T A A C G T A G T C A C G T
G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

PB0165.1_Sox11_2/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CAAAACAAATCT
NNCNNAACAATTNT
A C G T A C G T A G T C C G T A C G T A C G T A C G T A A G T C C G T A C G T A C G T A A C G T A G T C A C G T
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T

ZNF384/MA1125.1/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CAAAACAAATCT
TTTAAAAAAAAA---
A C G T A C G T A C G T A G T C C G T A C G T A C G T A C G T A A G T C C G T A C G T A C G T A A C G T A G T C A C G T
C G A T G C A T C G A T G T C A C G T A G C T A C G T A C G T A G C T A G C T A G C T A G C T A A C G T A C G T A C G T

PB0141.1_Isgf3g_2/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CAAAACAAATCT-
GCAAAACATTACTA
A C G T A G T C C G T A C G T A C G T A C G T A A G T C C G T A C G T A C G T A A C G T A G T C A C G T A C G T
A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CAAAACAAATCT
-AAAACAAAGG-
A G T C C G T A C G T A C G T A C G T A A G T C C G T A C G T A C G T A A C G T A G T C A C G T
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T

SRY/MA0084.1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CAAAACAAATCT
GTAAACAAT---
A G T C C G T A C G T A C G T A C G T A A G T C C G T A C G T A C G T A A C G T A G T C A C G T
A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T A C G T A C G T A C G T

PB0116.1_Elf3_2/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CAAAACAAATCT--
GTTCAAAAAAAAAATTC
A C G T A C G T A C G T A G T C C G T A C G T A C G T A C G T A A G T C C G T A C G T A C G T A A C G T A G T C A C G T A C G T A C G T
C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C

PB0120.1_Foxj1_2/Jaspar

Match Rank:9
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CAAAACAAATCT
ATGTCACAACAACAC-
A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A C G T A A G T C C G T A C G T A C G T A A C G T A G T C A C G T
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:10
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CAAAACAAATCT
---AACAAT---
A G T C C G T A C G T A C G T A C G T A A G T C C G T A C G T A C G T A A C G T A G T C A C G T
A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T A C G T