Information for 9-TTGCTTAG (Motif 37)

A C G T G C A T C T A G A T G C A C G T C G A T C G T A A C T G
Reverse Opposite:
A G T C C G A T C G T A C G T A A T C G A G T C C G T A C G T A
p-value:1e-4
log p-value:-1.011e+01
Information Content per bp:1.869
Number of Target Sequences with motif137.0
Percentage of Target Sequences with motif9.13%
Number of Background Sequences with motif3084.8
Percentage of Background Sequences with motif6.46%
Average Position of motif in Targets91.0 +/- 54.3bp
Average Position of motif in Background101.5 +/- 55.6bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:1
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----TTGCTTAG---
NCCGTTGCTANGNGN
A C G T A C G T A C G T A C G T A C G T G C A T C T A G A T G C A C G T C G A T C G T A A C T G A C G T A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----TTGCTTAG---
NNCGTTGCTATGGNN
A C G T A C G T A C G T A C G T A C G T G C A T C T A G A T G C A C G T C G A T C G T A A C T G A C G T A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

PB0054.1_Rfx3_1/Jaspar

Match Rank:3
Score:0.70
Offset:-8
Orientation:reverse strand
Alignment:--------TTGCTTAG-------
NTNNNNNGTTGCTANGGNNCANA
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T A G A T G C A C G T C G A T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TTGCTTAG-
CTGTTGCTAGGS
A C G T A C G T A C G T A C G T G C A T C T A G A T G C A C G T C G A T C G T A A C T G A C G T
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

RFX1/MA0509.2/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TTGCTTAG---
CTGTTGCTATGGCA
A C G T A C G T A C G T A C G T G C A T C T A G A T G C A C G T C G A T C G T A A C T G A C G T A C G T A C G T
A G T C C A G T C T A G A G C T G A C T C T A G G A T C A G C T C T G A C A G T C T A G T C A G G T A C C T G A

FOXN3/MA1489.1/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TTGCTTAG
TTGTTTAC
A C G T G C A T C T A G A T G C A C G T C G A T C G T A A C T G
A C G T A C G T A C T G A C G T A C G T A C G T C G T A A G T C

Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TTGCTTAG
GATTTGCATA-
A C G T A C G T A C G T A C G T G C A T C T A G A T G C A C G T C G A T C G T A A C T G
A C T G G T C A A C G T G C A T C G A T T C A G G T A C G T C A A C G T C T G A A C G T

Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TTGCTTAG----
TTGATTRGRTTA
A C G T G C A T C T A G A T G C A C G T C G A T C G T A A C T G A C G T A C G T A C G T A C G T
G A C T C G A T A C T G C G T A A C G T A C G T C T A G C T A G C T A G A G C T A G C T C G T A

Foxq1/MA0040.1/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TTGCTTAG-
TATTGTTTATT
A C G T A C G T A C G T G C A T C T A G A T G C A C G T C G A T C G T A A C T G A C G T
G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T

PH0026.1_Duxbl/Jaspar

Match Rank:10
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TTGCTTAG----
NNNNGTTGATTGGGTCG
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T A G A T G C A C G T C G A T C G T A A C T G A C G T A C G T A C G T A C G T
A T G C C G T A A G T C A G T C T C A G G A C T C G A T C T A G C T G A A C G T A C G T C T A G T C A G T C A G G A C T G A T C T C A G