Information for 22-CATAAAAGATAT (Motif 32)

A G T C C G T A A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C G T C G T A A C G T
Reverse Opposite:
C G T A A C G T C G T A A C G T A G T C A C G T A C G T A C G T A C G T C G T A A C G T A C T G
p-value:1e-3
log p-value:-7.689e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif7.14%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets70.0 +/- 0.0bp
Average Position of motif in Background94.1 +/- 49.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:CATAAAAGATAT---
----AAGGATATNTN
A G T C C G T A A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CATAAAAGATAT
GTCATAAAAN----
A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C G T C G T A A C G T
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T A C G T

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CATAAAAGATAT
KGCCATAAAA-----
A C G T A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C G T C G T A A C G T
C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:4
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CATAAAAGATAT
NGYCATAAAWCH---
A C G T A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C G T C G T A A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T A C G T

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CATAAAAGATAT
VGCCATAAAA-----
A C G T A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C G T C G T A A C G T
T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A A C G T A C G T A C G T A C G T A C G T

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CATAAAAGATAT
NCYAATAAAA-----
A C G T A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C G T C G T A A C G T
C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:7
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CATAAAAGATAT
CCYMATAAAA-----
A C G T A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C G T C G T A A C G T
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:8
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CATAAAAGATAT
AATGCAATAAAATTTAT
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C G T C G T A A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

CDX1/MA0878.2/Jaspar

Match Rank:9
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CATAAAAGATAT
GGCCATAAAAC----
A C G T A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C G T C G T A A C G T
C A T G C T A G A G T C T G A C C G T A A C G T C T G A C G T A C T G A G T C A A G T C A C G T A C G T A C G T A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:10
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CATAAAAGATAT
ACGGCCATAAAATTAAT
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A C G T A A C T G C G T A A C G T C G T A A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T