Information for 1-SGGKTRGRTCAA (Motif 1)

A T G C C T A G A C T G A C T G C G A T T C G A A C T G C T G A A C G T A G T C C G T A C G T A
Reverse Opposite:
A C G T C G A T A C T G C G T A A G C T G T A C A G C T C G T A G T A C A G T C A G T C A T C G
p-value:1e-7
log p-value:-1.698e+01
Information Content per bp:1.839
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets119.0 +/- 15.0bp
Average Position of motif in Background84.4 +/- 82.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.64
Offset:5
Orientation:forward strand
Alignment:SGGKTRGRTCAA
-----AGGTCA-
A T G C C T A G A C T G A C T G C G A T T C G A A C T G C T G A A C G T A G T C C G T A C G T A
A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T

Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer

Match Rank:2
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:SGGKTRGRTCAA--
------RRTCAATA
A T G C C T A G A C T G A C T G C G A T T C G A A C T G C T G A A C G T A G T C C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G C T G A A G C T G T A C C T G A C G T A A C G T C G T A

PB0040.1_Lef1_1/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:SGGKTRGRTCAA-------
--NANAGATCAAAGGGNNN
A T G C C T A G A C T G A C T G C G A T T C G A A C T G C T G A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T

NR2C2(var.2)/MA1536.1/Jaspar

Match Rank:4
Score:0.61
Offset:4
Orientation:forward strand
Alignment:SGGKTRGRTCAA
----GAGGTCAT
A T G C C T A G A C T G A C T G C G A T T C G A A C T G C T G A A C G T A G T C C G T A C G T A
A C G T A C G T A C G T A C G T T C A G T C G A A C T G A C T G A C G T A G T C C T G A G C A T

RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:5
Score:0.61
Offset:5
Orientation:forward strand
Alignment:SGGKTRGRTCAA-----
-----AGGTCAAGGTCA
A T G C C T A G A C T G A C T G C G A T T C G A A C T G C T G A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

NR2C1/MA1535.1/Jaspar

Match Rank:6
Score:0.60
Offset:3
Orientation:forward strand
Alignment:SGGKTRGRTCAA
---CGAGGTCAC
A T G C C T A G A C T G A C T G C G A T T C G A A C T G C T G A A C G T A G T C C G T A C G T A
A C G T A C G T A C G T G T A C C T A G T C G A A C T G A C T G A C G T A T G C C T G A G A T C

PB0157.1_Rara_2/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-SGGKTRGRTCAA---
AGAGCGGGGTCAAGTA
A C G T A T G C C T A G A C T G A C T G C G A T T C G A A C T G C T G A A C G T A G T C C G T A C G T A A C G T A C G T A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:SGGKTRGRTCAA-------
--NNNAGATCAAAGGANNN
A T G C C T A G A C T G A C T G C G A T T C G A A C T G C T G A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C T A G C A T

RHOXF1/MA0719.1/Jaspar

Match Rank:9
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:SGGKTRGRTCAA
----NGGATTAN
A T G C C T A G A C T G A C T G C G A T T C G A A C T G C T G A A C G T A G T C C G T A C G T A
A C G T A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:10
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:SGGKTRGRTCAA---
-----DGATCRATAN
A T G C C T A G A C T G A C T G C G A T T C G A A C T G C T G A A C G T A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G C T A G C T G A A C G T A G T C C T A G C G T A A C G T G T C A G A T C