Information for 4-TDVVTGCAAAGG (Motif 5)

A C G T C A G T T A C G T A C G A G C T C T A G A G T C G T C A C T G A G T C A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T A G C T A C G T C T A G A G T C C T G A A C G T A G T C G C T A G T C A
p-value:1e-5
log p-value:-1.229e+01
Information Content per bp:1.688
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif3286.4
Percentage of Background Sequences with motif4.29%
Average Position of motif in Targets97.1 +/- 57.6bp
Average Position of motif in Background99.7 +/- 70.6bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.2/Jaspar

Match Rank:1
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:TDVVTGCAAAGG-
--NNTGCCAAGNN
A C G T C A G T T A C G T A C G A G C T C T A G A G T C G T C A C T G A G T C A A C T G A C T G A C G T
A C G T A C G T G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A

HNF4A(var.2)/MA1494.1/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TDVVTGCAAAGG----
-GGGTCCAAAGGTCAC
A C G T C A G T T A C G T A C G A G C T C T A G A G T C G T C A C T G A G T C A A C T G A C T G A C G T A C G T A C G T A C G T
A C G T T C A G C T A G C A T G C A G T G A T C G A T C C T G A C G T A C T G A A C T G C A T G A C G T A G T C C T G A G T A C

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:3
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TDVVTGCAAAGG
--ACWTCAAAGG
A C G T C A G T T A C G T A C G A G C T C T A G A G T C G T C A C T G A G T C A A C T G A C T G
A C G T A C G T C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.59
Offset:6
Orientation:forward strand
Alignment:TDVVTGCAAAGG----
------CAAAGGTCAG
A C G T C A G T T A C G T A C G A G C T C T A G A G T C G T C A C T G A G T C A A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

POU5F1/MA1115.1/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TDVVTGCAAAGG
-ATATGCAAATT
A C G T C A G T T A C G T A C G A G C T C T A G A G T C G T C A C T G A G T C A A C T G A C T G
A C G T C G T A G C A T T C G A G A C T C T A G A G T C G C T A C T G A G C T A G C A T C A G T

OVOL2/MA1545.1/Jaspar

Match Rank:6
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TDVVTGCAAAGG---
--NNNNTAACGGTNN
A C G T C A G T T A C G T A C G A G C T C T A G A G T C G T C A C T G A G T C A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T T A G C C T G A G T A C T C G A A G C T G T C A C T G A A G T C A T C G A T C G C G A T G C T A G A T C

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TDVVTGCAAAGG---
---ANGNAAAGGTCA
A C G T C A G T T A C G T A C G A G C T C T A G A G T C G T C A C T G A G T C A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

NR5A1/MA1540.1/Jaspar

Match Rank:8
Score:0.57
Offset:5
Orientation:forward strand
Alignment:TDVVTGCAAAGG----
-----GTCAAGGTCAC
A C G T C A G T T A C G T A C G A G C T C T A G A G T C G T C A C T G A G T C A A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C T G G A C T A T G C C T G A C G T A A C T G A C T G G A C T A G T C C T G A G A T C

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TDVVTGCAAAGG
--ACATCAAAGG
A C G T C A G T T A C G T A C G A G C T C T A G A G T C G T C A C T G A G T C A A C T G A C T G
A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TDVVTGCAAAGG
--AAAACAAAGG
A C G T C A G T T A C G T A C G A G C T C T A G A G T C G T C A C T G A G T C A A C T G A C T G
A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G