Information for 10-CAGCTTAA (Motif 32)

A T G C C T G A A C T G A G T C A G C T A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A C T G A A C T G A G T C A G C T A T C G
p-value:1e-4
log p-value:-9.905e+00
Information Content per bp:1.927
Number of Target Sequences with motif62.0
Percentage of Target Sequences with motif1.61%
Number of Background Sequences with motif429.1
Percentage of Background Sequences with motif0.94%
Average Position of motif in Targets105.2 +/- 56.5bp
Average Position of motif in Background102.2 +/- 54.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CAGCTTAA
CAGCC---
A T G C C T G A A C T G A G T C A G C T A C G T C G T A C G T A
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CAGCTTAA
CAAGCTT--
A C G T A T G C C T G A A C T G A G T C A G C T A C G T C G T A C G T A
G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:3
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CAGCTTAA
NAHCAGCTGD-
A C G T A C G T A C G T A T G C C T G A A C T G A G T C A G C T A C G T C G T A C G T A
G T C A T G C A G C T A A G T C C G T A A C T G T G A C G C A T T C A G C A G T A C G T

OTX1/MA0711.1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CAGCTTAA
CGGATTAN
A T G C C T G A A C T G A G T C A G C T A C G T C G T A C G T A
T A G C T A C G A T C G G T C A A C G T G C A T C G T A C T G A

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CAGCTTAA
ANCAGCTG--
A C G T A C G T A T G C C T G A A C T G A G T C A G C T A C G T C G T A C G T A
C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CAGCTTAA
CACAGN----
A C G T A C G T A T G C C T G A A C T G A G T C A G C T A C G T C G T A C G T A
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CAGCTTAA
AACAGCTG--
A C G T A C G T A T G C C T G A A C T G A G T C A G C T A C G T C G T A C G T A
T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G A C G T A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:8
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CAGCTTAA----
CTTAACCACTTAAGGAT
A C G T A C G T A C G T A C G T A C G T A T G C C T G A A C T G A G T C A G C T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

BHLHE22(var.2)/MA1635.1/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CAGCTTAA
NNCAGCTGNN
A C G T A C G T A T G C C T G A A C T G A G T C A G C T A C G T C G T A C G T A
A T G C T A C G A T G C T C G A A T C G T A G C A G C T T C A G A T G C T A C G

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:10
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CAGCTTAA-
-GGATTAGC
A T G C C T G A A C T G A G T C A G C T A C G T C G T A C G T A A C G T
A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C