Information for 3-TRTCACACTACA (Motif 3)

A C G T C T A G A C G T A T G C G C T A A G T C C G T A A G T C A C G T C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T C G T A A C T G A C G T A C T G C G A T A T C G C G T A A G T C C G T A
p-value:1e-17
log p-value:-4.019e+01
Information Content per bp:1.896
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif6.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets104.5 +/- 43.4bp
Average Position of motif in Background152.2 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0091.1_Zbtb3_1/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TRTCACACTACA-----
AATCGCACTGCATTCCG
A C G T C T A G A C G T A T G C G C T A A G T C C G T A A G T C A C G T C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TRTCACACTACA
KTTCACACCT--
A C G T C T A G A C G T A T G C G C T A A G T C C G T A A G T C A C G T C G T A A G T C C G T A
C A G T C A G T A C G T T A G C G C T A A G T C C T G A G T A C G A T C G C A T A C G T A C G T

ZNF282/MA1154.1/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TRTCACACTACA----
CTTTCCCACAACACGAC
A C G T A C G T C T A G A C G T A T G C G C T A A G T C C G T A A G T C A C G T C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A T G C G C A T C G A T C A G T A T G C A G T C A T G C G T C A G A T C C G T A C G T A A T G C G T C A A G T C C A T G C T G A A T G C

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TRTCACACTACA
CNGTCACGCCAC-
A C G T A C G T C T A G A C G T A T G C G C T A A G T C C G T A A G T C A C G T C G T A A G T C C G T A
G T A C C T A G T C A G A G C T T A G C C G T A A T G C T A C G A G T C G T A C G T C A A G T C A C G T

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TRTCACACTACA
-ATCACCCCAT-
A C G T C T A G A C G T A T G C G C T A A G T C C G T A A G T C A C G T C G T A A G T C C G T A
A C G T T C G A G C A T A T G C C T G A A T G C T A G C A G T C G T A C T C G A A G C T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:6
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TRTCACACTACA---
---NWAACCACADNN
A C G T C T A G A C G T A T G C G C T A A G T C C G T A A G T C A C G T C G T A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

PB0120.1_Foxj1_2/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TRTCACACTACA----
-ATGTCACAACAACAC
A C G T C T A G A C G T A T G C G C T A A G T C C G T A A G T C A C G T C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C

NKX2-8/MA0673.1/Jaspar

Match Rank:8
Score:0.56
Offset:4
Orientation:forward strand
Alignment:TRTCACACTACA-
----CCACTTGAA
A C G T C T A G A C G T A T G C G C T A A G T C C G T A A G T C A C G T C G T A A G T C C G T A A C G T
A C G T A C G T A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:TRTCACACTACA--
----AAACCACAGC
A C G T C T A G A C G T A T G C G C T A A G T C C G T A A G T C A C G T C G T A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:10
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TRTCACACTACA-
---NSCACTYVAV
A C G T C T A G A C G T A T G C G C T A A G T C C G T A A G T C A C G T C G T A A G T C C G T A A C G T
A C G T A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G