Information for 7-GCCGGTCATA (Motif 29)

A C T G A G T C A G T C A C T G A C T G A C G T A G T C C G T A A C G T C G T A
Reverse Opposite:
A C G T C G T A A C G T A C T G C G T A A G T C A G T C A C T G A C T G A G T C
p-value:1e-3
log p-value:-8.829e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif9.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets149.0 +/- 0.0bp
Average Position of motif in Background143.0 +/- 37.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR1H4/MA1110.1/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GCCGGTCATA--
-NAGGTCATTGA
A C T G A G T C A G T C A C T G A C T G A C G T A G T C C G T A A C G T C G T A A C G T A C G T
A C G T C G A T T C G A C A T G C A T G A C G T G A T C T C G A A G C T G C A T T C A G T G C A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GCCGGTCATA
--AGGTCA--
A C T G A G T C A G T C A C T G A C T G A C G T A G T C C G T A A C G T C G T A
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T

NR2C1/MA1535.1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCCGGTCATA
CGAGGTCAC-
A C T G A G T C A G T C A C T G A C T G A C G T A G T C C G T A A C G T C G T A
G T A C C T A G T C G A A C T G A C T G A C G T A T G C C T G A G A T C A C G T

NR2C2(var.2)/MA1536.1/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GCCGGTCATA
-GAGGTCAT-
A C T G A G T C A G T C A C T G A C T G A C G T A G T C C G T A A C G T C G T A
A C G T T C A G T C G A A C T G A C T G A C G T A G T C C T G A G C A T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GCCGGTCATA
-GCTGTCAA-
A C T G A G T C A G T C A C T G A C T G A C G T A G T C C G T A A C G T C G T A
A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GCCGGTCATA
-CCTGTCAA-
A C T G A G T C A G T C A C T G A C T G A C G T A G T C C G T A A C G T C G T A
A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GCCGGTCATA--
AAGCACCTGTCAATAT
A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C T G A C T G A C G T A G T C C G T A A C G T C G T A A C G T A C G T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GCCGGTCATA--
CGCGCCGGGTCACGTA
A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C T G A C T G A C G T A G T C C G T A A C G T C G T A A C G T A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

PH0013.1_Cdx2/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCCGGTCATA------
AAAGGTAATAAAATTT
A C T G A G T C A G T C A C T G A C T G A C G T A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GCCGGTCATA
AGRGGTCA--
A C T G A G T C A G T C A C T G A C T G A C G T A G T C C G T A A C G T C G T A
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T