Information for 24-TGCTTAAATGGC (Motif 22)

A C G T A C T G A G T C A C G T A C G T C G T A C G T A C G T A A C G T A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C C G T A A C G T A C G T A C G T C G T A C G T A A C T G A G T C C G T A
p-value:1e-4
log p-value:-9.631e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets180.0 +/- 0.0bp
Average Position of motif in Background91.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TGCTTAAATGGC----
NTNNTTAAGTGGNTNAN
A C G T A C G T A C T G A G T C A C G T A C G T C G T A C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

PB0184.1_Tbp_2/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TGCTTAAATGGC
GNNCGCTTAAATCGG
A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C G T C G T A C G T A C G T A A C G T A C T G A C T G A G T C
C A T G T A C G C A G T G T A C A T C G T A G C C G A T C A G T C G T A C G T A C T G A G C A T A T G C T A C G A C T G

BARHL2/MA0635.1/Jaspar

Match Rank:3
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TGCTTAAATGGC
--GCTAAACGGT
A C G T A C T G A G T C A C G T A C G T C G T A C G T A C G T A A C G T A C T G A C T G A G T C
A C G T A C G T T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T

PH0004.1_Nkx3-2/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TGCTTAAATGGC----
NTNNTTAAGTGGTTANN
A C G T A C G T A C T G A G T C A C G T A C G T C G T A C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G

Nkx3-1/MA0124.2/Jaspar

Match Rank:5
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TGCTTAAATGGC
---TTAAGTGGT
A C G T A C T G A G T C A C G T A C G T C G T A C G T A C G T A A C G T A C T G A C T G A G T C
A C G T A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T

ISL2/MA0914.1/Jaspar

Match Rank:6
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:TGCTTAAATGGC
---TTAAGTGC-
A C G T A C T G A G T C A C G T A C G T C G T A C G T A C G T A A C G T A C T G A C T G A G T C
A C G T A C G T A C G T G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:TGCTTAAATGGC-
---GTTAATGGCC
A C G T A C T G A G T C A C G T A C G T C G T A C G T A C G T A A C G T A C T G A C T G A G T C A C G T
A C G T A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

BARHL1/MA0877.2/Jaspar

Match Rank:8
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TGCTTAAATGGC
---CTAAACGG-
A C G T A C T G A G T C A C G T A C G T C G T A C G T A C G T A A C G T A C T G A C T G A G T C
A C G T A C G T A C G T T A G C C G A T C G T A G T C A C G T A A G T C C T A G C A T G A C G T

MSX2/MA0708.1/Jaspar

Match Rank:9
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TGCTTAAATGGC
---NTAATTGG-
A C G T A C T G A G T C A C G T A C G T C G T A C G T A C G T A A C G T A C T G A C T G A G T C
A C G T A C G T A C G T A G C T C A G T T C G A C G T A A C G T C A G T C T A G A T C G A C G T

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TGCTTAAATGGC-
-CCATATATGGNA
A C G T A C T G A G T C A C G T A C G T C G T A C G T A C G T A A C G T A C T G A C T G A G T C A C G T
A C G T A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A