Information for 13-GTCTCTCATATT (Motif 20)

A C T G A C G T A G T C A C G T A G T C A C G T A G T C C G T A A C G T C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A A C G T C G T A A C G T A C T G C G T A A C T G C G T A A C T G C G T A A G T C
p-value:1e-5
log p-value:-1.371e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.33%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets100.7 +/- 26.7bp
Average Position of motif in Background92.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)3.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GTCTCTCATATT
TGTCTGDCACCT-
A C G T A C T G A C G T A G T C A C G T A G T C A C G T A G T C C G T A A C G T C G T A A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T

PKNOX1/MA0782.2/Jaspar

Match Rank:2
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----GTCTCTCATATT
NNGCTGTCACTCANN--
A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T A G T C A C G T A G T C C G T A A C G T C G T A A C G T A C G T
G A C T T C G A A T C G T G A C G C A T C T A G G A C T T A G C G C T A T G A C G A C T A G T C G C T A C G T A G C T A A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GTCTCTCATATT
CTGTCTGTCACCT-
A C G T A C G T A C T G A C G T A G T C A C G T A G T C A C G T A G T C C G T A A C G T C G T A A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T

PB0106.1_Arid5a_2/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GTCTCTCATATT-----
TNNTTTCGTATTNNANN
A C T G A C G T A G T C A C G T A G T C A C G T A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G C T T C G A G C A T G A C T G A C T A T G C A T C G A C G T T G C A A C G T C G A T A C T G G C A T C T G A G A C T T A C G

Arid5a/MA0602.1/Jaspar

Match Rank:5
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GTCTCTCATATT------
----CTAATATTGCTAAA
A C T G A C G T A G T C A C G T A G T C A C G T A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:6
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GTCTCTCATATT------
----CTAATATTGCTAAA
A C T G A C G T A G T C A C G T A G T C A C G T A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PBX3/MA1114.1/Jaspar

Match Rank:7
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------GTCTCTCATATT
NNNCCTGTCACTCANNN-
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T A G T C A C G T A G T C C G T A A C G T C G T A A C G T A C G T
T A G C A G T C T A C G A T G C T G A C G A C T A T C G G A C T A T G C G T C A T G A C G C A T A G T C G C T A T G A C T G A C A T G C A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GTCTCTCATATT
NCTGTCAATCAN---
A C G T A C G T A C G T A C T G A C G T A G T C A C G T A G T C A C G T A G T C C G T A A C G T C G T A A C G T A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T A C G T

PAX3(var.2)/MA1546.1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GTCTCTCATATT--
CCGTCACGCTAATTAA
A C G T A C G T A C T G A C G T A G T C A C G T A G T C A C G T A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T
A G T C A T G C A C T G G C A T A G T C C T G A G A T C T C A G A T G C G A C T G C T A T C G A G C A T G A C T C G T A T C G A

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:10
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GTCTCTCATATT--
--GKVTCADRTTWC
A C T G A C G T A G T C A C G T A G T C A C G T A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C