Information for 1-TGGCTCTC (Motif 7)

A G C T A C T G T A C G A G T C C G A T A T G C A C G T A G T C
Reverse Opposite:
A C T G G T C A A T C G C G T A C T A G A T G C G T A C C T G A
p-value:1e-9
log p-value:-2.230e+01
Information Content per bp:1.857
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif15.00%
Number of Background Sequences with motif2155.7
Percentage of Background Sequences with motif4.71%
Average Position of motif in Targets101.9 +/- 58.6bp
Average Position of motif in Background98.9 +/- 61.7bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TGGCTCTC
NTTGGCANN-
A C G T A C G T A G C T A C T G T A C G A G T C C G A T A T G C A C G T A G T C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TGGCTCTC---
AGCCACTCAAG
A G C T A C T G T A C G A G T C C G A T A T G C A C G T A G T C A C G T A C G T A C G T
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

ZNF16/MA1654.1/Jaspar

Match Rank:3
Score:0.61
Offset:-11
Orientation:reverse strand
Alignment:-----------TGGCTCTC----
AAAACCTTCCATGGCTCCCTATT
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C T G T A C G A G T C C G A T A T G C A C G T A G T C A C G T A C G T A C G T A C G T
T C G A T C G A T G C A T C G A G A T C G A T C G A C T A G C T A G T C G T A C C T G A A C G T C T A G C T A G G A T C A G C T A T G C G T A C G A T C G A C T T G C A A G C T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TGGCTCTC---
-RSCACTYRAG
A G C T A C T G T A C G A G T C C G A T A T G C A C G T A G T C A C G T A C G T A C G T
A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

PKNOX1/MA0782.2/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TGGCTCTC---
NNGCTGTCACTCANN
A C G T A C G T A C G T A C G T A G C T A C T G T A C G A G T C C G A T A T G C A C G T A G T C A C G T A C G T A C G T
G A C T T C G A A T C G T G A C G C A T C T A G G A C T T A G C G C T A T G A C G A C T A G T C G C T A C G T A G C T A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TGGCTCTC--
AASCACTCAA
A G C T A C T G T A C G A G T C C G A T A T G C A C G T A G T C A C G T A C G T
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TGGCTCTC
-NGCTN--
A G C T A C T G T A C G A G T C C G A T A T G C A C G T A G T C
A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T

PBX3/MA1114.1/Jaspar

Match Rank:8
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----TGGCTCTC----
NNNCCTGTCACTCANNN
A C G T A C G T A C G T A C G T A C G T A G C T A C T G T A C G A G T C C G A T A T G C A C G T A G T C A C G T A C G T A C G T A C G T
T A G C A G T C T A C G A T G C T G A C G A C T A T C G G A C T A T G C G T C A T G A C G C A T A G T C G C T A T G A C T G A C A T G C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGGCTCTC----
CTGTCTGTCACCT
A C G T A G C T A C T G T A C G A G T C C G A T A T G C A C G T A G T C A C G T A C G T A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TGGCTCTC---
-NSCACTYVAV
A G C T A C T G T A C G A G T C C G A T A T G C A C G T A G T C A C G T A C G T A C G T
A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G