Information for 3-GAGAATTAATTC (Motif 4)

C A T G C G T A A C T G C G T A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C
Reverse Opposite:
A C T G C G T A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C C G A T G T A C
p-value:1e-6
log p-value:-1.455e+01
Information Content per bp:1.923
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif11.76%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets86.0 +/- 40.0bp
Average Position of motif in Background119.6 +/- 32.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx3/MA0135.1/Jaspar

Match Rank:1
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-GAGAATTAATTC
GATTAATTAATTT
A C G T C A T G C G T A A C T G C G T A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C
T C A G C T G A G C A T C G A T C T G A C G T A A C G T C G A T C G T A C G T A C G A T A C G T G C A T

PH0142.1_Pou1f1/Jaspar

Match Rank:2
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-GAGAATTAATTC----
GATTAATTAATTAAGTC
A C G T C A T G C G T A A C T G C G T A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C G T A C G T A C G T A C G T
C T A G T C G A C G A T C A G T G T C A G C T A C G A T C G A T C G T A C G T A C G A T C A G T G C T A C G T A C A T G C G A T A G T C

PH0149.1_Pou3f4/Jaspar

Match Rank:3
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-GAGAATTAATTC----
AATTAATTAATTAATTC
A C G T C A T G C G T A A C T G C G T A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C G T A C G T A C G T A C G T
C T G A T G C A G C A T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G C T A C T G A C A G T C G A T A G T C

PH0146.1_Pou3f1/Jaspar

Match Rank:4
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GAGAATTAATTC----
AATTAATTAATTAATTC
A C G T C A T G C G T A A C T G C G T A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C G T A C G T A C G T A C G T
C T G A T G C A A G C T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G T C A T C G A A C G T C G A T G T A C

PH0147.1_Pou3f2/Jaspar

Match Rank:5
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GAGAATTAATTC-----
GATAATTAATTAGTTTG
C A T G C G T A A C T G C G T A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T
T A C G C G A T C G A T C G T A G C T A G A C T A G C T G C T A C G T A C G A T A C G T G C T A C T A G A C G T C A G T G A C T C T A G

PH0118.1_Nkx6-1_1/Jaspar

Match Rank:6
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GAGAATTAATTC-----
GAAAATTAATTACTTCG
C A T G C G T A A C T G C G T A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T
C T A G T G C A G C T A C G T A C G T A C G A T A G C T C G T A C G T A C G A T A C G T C T G A G T A C G A C T A G C T A G T C A T C G

Arid3b/MA0601.1/Jaspar

Match Rank:7
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GAGAATTAATTC
-NTAATTAATAT
C A T G C G T A A C T G C G T A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C
A C G T A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T

PH0124.1_Obox5_1/Jaspar

Match Rank:8
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GAGAATTAATTC-----
NANANTTAATCCCNNNN
C A T G C G T A A C T G C G T A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T
C A T G C G T A C T G A C T G A C G A T G C A T C G A T C G T A C G T A C G A T G A T C A G T C A G T C A G C T A G T C G A C T C G T A

PH0120.1_Nkx6-3/Jaspar

Match Rank:9
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GAGAATTAATTC-----
GAAAATTAATTACTTTG
C A T G C G T A A C T G C G T A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T
C T A G T G C A G C A T C G T A G C T A C G A T G A C T C G T A C G T A C G A T A C G T C T G A T G A C A G C T A C G T A G C T A C T G

MF0010.1_Homeobox_class/Jaspar

Match Rank:10
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:GAGAATTAATTC
---AATTATT--
C A T G C G T A A C T G C G T A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C
A C G T A C G T A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T A C G T