Information for 21-TTATGTAGTTCA (Motif 34)

A C G T A C G T C G T A A C G T A C T G A C G T C G T A A C T G A C G T A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A C G T A A G T C A C G T C G T A A G T C C G T A A C G T C G T A C G T A
p-value:1e-3
log p-value:-7.445e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif6.25%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets110.0 +/- 0.0bp
Average Position of motif in Background66.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TTATGTAGTTCA-
TATAAGTAGGTCAA
A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A C T G A C G T A C G T A G T C C G T A A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

RORC/MA1151.1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TTATGTAGTTCA
ATAAGTAGGTCA
A C G T A C G T C G T A A C G T A C T G A C G T C G T A A C T G A C G T A C G T A G T C C G T A
C T G A C G A T G C T A C G T A A C T G A C G T T C G A C A T G C T A G A C G T A G T C C T G A

NFIL3/MA0025.2/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TTATGTAGTTCA
TATTATGCAATAT-
A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A C T G A C G T A C G T A G T C C G T A
C G A T T C G A G C A T C A G T C T G A G A C T C T A G G A T C G T C A C G T A A G C T G T C A G C A T A C G T

NR1I3/MA1534.1/Jaspar

Match Rank:4
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:TTATGTAGTTCA-
----AAAGTTCAT
A C G T A C G T C G T A A C G T A C T G A C G T C G T A A C T G A C G T A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T C G T A C T G A C T G A A C T G A C G T C A G T A G T C C T G A G A C T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TTATGTAGTTCA
--AAYTAGGTCA
A C G T A C G T C G T A A C G T A C T G A C G T C G T A A C T G A C G T A C G T A G T C C G T A
A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:6
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TTATGTAGTTCA
--AAYTAGGTCA
A C G T A C G T C G T A A C G T A C T G A C G T C G T A A C T G A C G T A C G T A G T C C G T A
A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TTATGTAGTTCA----
-AAWCTAGGTCARDNN
A C G T A C G T C G T A A C G T A C T G A C G T C G T A A C T G A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T
A C G T C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A

RORB/MA1150.1/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TTATGTAGTTCA-
--AATTAGGTCAC
A C G T A C G T C G T A A C G T A C T G A C G T C G T A A C T G A C G T A C G T A G T C C G T A A C G T
A C G T A C G T C G T A G C T A C G A T A C G T C T G A A C T G C T A G A G C T G A T C C T G A G A T C

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TTATGTAGTTCA-
-WAABTAGGTCAV
A C G T A C G T C G T A A C G T A C T G A C G T C G T A A C T G A C G T A C G T A G T C C G T A A C G T
A C G T C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G

TEF/MA0843.1/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TTATGTAGTTCA
NGTTACGTAATN--
A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A C T G A C G T A C G T A G T C C G T A
A C G T T C A G G A C T C G A T T C G A A G T C C T A G A G C T G C T A C G T A A G C T T C G A A C G T A C G T