Information for 3-TTCAVCCAAGHG (Motif 3)

C G A T A C G T G T A C C G T A T A C G G T A C G T A C C G T A C G T A A C T G G C T A A T C G
Reverse Opposite:
A T G C C A G T A G T C C G A T C G A T A C T G A C T G A G T C A C G T A C T G G T C A C G T A
p-value:1e-5
log p-value:-1.377e+01
Information Content per bp:1.689
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif40.00%
Number of Background Sequences with motif727.9
Percentage of Background Sequences with motif0.85%
Average Position of motif in Targets125.5 +/- 45.2bp
Average Position of motif in Background94.1 +/- 78.4bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF136/MA1588.1/Jaspar

Match Rank:1
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TTCAVCCAAGHG---
GTCAACCAAGAATTC
C G A T A C G T G T A C C G T A T A C G G T A C G T A C C G T A C G T A A C T G G C T A A T C G A C G T A C G T A C G T
C A T G G A C T G A T C G T C A C T G A A G T C G A T C G T C A T C G A C T A G C T G A C G T A A G C T G C A T A G T C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TTCAVCCAAGHG
-BCAGACWA---
C G A T A C G T G T A C C G T A T A C G G T A C G T A C C G T A C G T A A C T G G C T A A T C G
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TTCAVCCAAGHG-----
-GCAGCCAAGCGTGACN
C G A T A C G T G T A C C G T A T A C G G T A C G T A C C G T A C G T A A C T G G C T A A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:4
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----TTCAVCCAAGHG----
NGTGTTCAVTSAAGCGKAAA
A C G T A C G T A C G T A C G T C G A T A C G T G T A C C G T A T A C G G T A C G T A C C G T A C G T A A C T G G C T A A T C G A C G T A C G T A C G T A C G T
A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TTCAVCCAAGHG-
--AAGGCAAGTGT
C G A T A C G T G T A C C G T A T A C G G T A C G T A C C G T A C G T A A C T G G C T A A T C G A C G T
A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TTCAVCCAAGHG----
-SCAGYCADGCATGAC
C G A T A C G T G T A C C G T A T A C G G T A C G T A C C G T A C G T A A C T G G C T A A T C G A C G T A C G T A C G T A C G T
A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

SOX10/MA0442.2/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TTCAVCCAAGHG
-AAAACAAAGAA
C G A T A C G T G T A C C G T A T A C G G T A C G T A C C G T A C G T A A C T G G C T A A T C G
A C G T C T G A C T G A T G C A G C T A A G T C C G T A G C T A G C T A A C T G T C G A T G C A

SOX4/MA0867.2/Jaspar

Match Rank:8
Score:0.52
Offset:2
Orientation:forward strand
Alignment:TTCAVCCAAGHG
--GAACAAAGGG
C G A T A C G T G T A C C G T A T A C G G T A C G T A C C G T A C G T A A C T G G C T A A T C G
A C G T A C G T C T A G T C G A C G T A A T G C T C G A T C G A G C T A C T A G T C A G T C A G

PAX9/MA0781.1/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TTCAVCCAAGHG-----
TGCAGTCATGCGTGACG
C G A T A C G T G T A C C G T A T A C G G T A C G T A C C G T A C G T A A C T G G C T A A T C G A C G T A C G T A C G T A C G T A C G T
C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G

NFIC/MA0161.2/Jaspar

Match Rank:10
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:TTCAVCCAAGHG
-NNTGCCAAGNN
C G A T A C G T G T A C C G T A T A C G G T A C G T A C C G T A C G T A A C T G G C T A A T C G
A C G T G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A