Information for 2-GTTTTASGGT (Motif 6)

A T C G C G A T G A C T A C G T A C G T C G T A T A G C C T A G C A T G A G C T
Reverse Opposite:
C T G A G T A C A G T C A T C G G C A T T G C A C G T A C T G A C G T A T A G C
p-value:1e-10
log p-value:-2.335e+01
Information Content per bp:1.709
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif2.68%
Number of Background Sequences with motif238.0
Percentage of Background Sequences with motif0.50%
Average Position of motif in Targets97.4 +/- 57.2bp
Average Position of motif in Background100.4 +/- 52.1bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD12/MA0873.1/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GTTTTASGGT-
NTTTTACGACT
A T C G C G A T G A C T A C G T A C G T C G T A T A G C C T A G C A T G A G C T A C G T
C A G T C G A T G C A T A G C T G C A T C T G A A G T C A T C G T C G A A G T C A G C T

HOXC9/MA0485.2/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GTTTTASGGT
NTTTTACGAC
A T C G C G A T G A C T A C G T A C G T C G T A T A G C C T A G C A T G A G C T
C T G A C G A T A C G T A C G T C G A T G T C A A G T C A C T G C T G A A G T C

HOXD10/MA1506.1/Jaspar

Match Rank:3
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GTTTTASGGT-
NTTTTACGACC
A T C G C G A T G A C T A C G T A C G T C G T A T A G C C T A G C A T G A G C T A C G T
C T A G C G A T C A G T A C G T G C A T G T C A A G T C A C T G T C G A A G T C A G T C

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:GTTTTASGGT-
-TTTTATGGCB
A T C G C G A T G A C T A C G T A C G T C G T A T A G C C T A G C A T G A G C T A C G T
A C G T G C A T C G A T G C A T G A C T G C T A A G C T C A T G C T A G A T G C A G T C

HOXC12/MA0906.1/Jaspar

Match Rank:5
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GTTTTASGGT-
NTTTTACGACC
A T C G C G A T G A C T A C G T A C G T C G T A T A G C C T A G C A T G A G C T A C G T
C G A T C A G T C G A T G C A T C G A T T C G A A G T C C A T G C T G A A G T C G A T C

HOXB9/MA1503.1/Jaspar

Match Rank:6
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GTTTTASGGT
NTTTTACGAC
A T C G C G A T G A C T A C G T A C G T C G T A T A G C C T A G C A T G A G C T
C T G A C G A T C A G T A C G T C G A T G T C A A G T C A C T G C T G A A G T C

HOXC11/MA0651.1/Jaspar

Match Rank:7
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GTTTTASGGT-
NTTTTACGACC
A T C G C G A T G A C T A C G T A C G T C G T A T A G C C T A G C A T G A G C T A C G T
C G T A C G A T C A G T C G A T G C A T C G T A A G T C C T A G C T G A A G T C G A T C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:8
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GTTTTASGGT-
DGWTTTATGRCN
A C G T A T C G C G A T G A C T A C G T A C G T C G T A T A G C C T A G C A T G A G C T A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GTTTTASGGT-
-TTTTATGGCM
A T C G C G A T G A C T A C G T A C G T C G T A T A G C C T A G C A T G A G C T A C G T
A C G T C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C

HOXD11/MA0908.1/Jaspar

Match Rank:10
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GTTTTASGGT
NTTTTACGAC
A T C G C G A T G A C T A C G T A C G T C G T A T A G C C T A G C A T G A G C T
C G A T C G A T C G A T C G A T C G A T C G T A A G T C C T A G C G T A A G T C