Information for 4-CCAACCAGGCTA (Motif 4)

A G T C A G T C C G T A C G T A A G T C A G T C C G T A A C T G A C T G A G T C A C G T C G T A
Reverse Opposite:
A C G T C G T A A C T G G T A C A G T C C G A T A C T G A C T G A C G T C G A T A C T G A C T G
p-value:1e-6
log p-value:-1.437e+01
Information Content per bp:1.948
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif13.33%
Number of Background Sequences with motif6.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.8 +/- 27.6bp
Average Position of motif in Background90.9 +/- 80.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFYA/MA0060.3/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCAACCAGGCTA
AACCAATCAGA---
A C G T A C G T A G T C A G T C C G T A C G T A A G T C A G T C C G T A A C T G A C T G A G T C A C G T C G T A
T C G A C T G A A G T C G A T C G C T A T C G A G A C T T A G C T C G A T A C G T G C A A C G T A C G T A C G T

NFYC/MA1644.1/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCAACCAGGCTA
AGCCAATCAGA---
A C G T A C G T A G T C A G T C C G T A C G T A A G T C A G T C C G T A A C T G A C T G A G T C A C G T C G T A
T C G A C T A G A G T C G T A C G C T A T C G A G A C T T A G C T C G A T A C G T G C A A C G T A C G T A C G T

ZNF449/MA1656.1/Jaspar

Match Rank:3
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------CCAACCAGGCTA
CCAAGCCCAACCAG----
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A G T C A G T C C G T A A C T G A C T G A G T C A C G T C G T A
G T A C T G A C T G C A G C T A C T A G T A G C G T A C G T A C G C T A C T G A T G A C G T A C G T C A T A C G A C G T A C G T A C G T A C G T

Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer

Match Rank:4
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CCAACCAGGCTA
AGACCACCCASR---
A C G T A C G T A C G T A G T C A G T C C G T A C G T A A G T C A G T C C G T A A C T G A C T G A G T C A C G T C G T A
C T G A A C T G T C G A T G A C G A T C G C T A T A G C T G A C G T A C C G T A T A G C T C A G A C G T A C G T A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:5
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CCAACCAGGCTA
GGACCACCCACG---
A C G T A C G T A C G T A G T C A G T C C G T A C G T A A G T C A G T C C G T A A C T G A C T G A G T C A C G T C G T A
C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:6
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------CCAACCAGGCTA
ACTATGCCAACCTACC--
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A G T C A G T C C G T A A C T G A C T G A G T C A C G T C G T A
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CCAACCAGGCTA
AGCCAATCGG----
A C G T A C G T A G T C A G T C C G T A C G T A A G T C A G T C C G T A A C T G A C T G A G T C A C G T C G T A
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CCAACCAGGCTA
----BCAGACWA
A G T C A G T C C G T A C G T A A G T C A G T C C G T A A C T G A C T G A G T C A C G T C G T A
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

GRHL2/MA1105.2/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CCAACCAGGCTA-
-AAAACAGGTTTT
A G T C A G T C C G T A C G T A A G T C A G T C C G T A A C T G A C T G A G T C A C G T C G T A A C G T
A C G T T G C A T C G A C T G A C T G A T A G C G C T A C T A G T A C G G A C T G A C T A G C T C A G T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:10
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----CCAACCAGGCTA
ATTTCCCAGVAKSCY-
A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A G T C A G T C C G T A A C T G A C T G A G T C A C G T C G T A
T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C A C G T