Information for 20-TAAAGTCCATGA (Motif 24)

A C G T C G T A C G T A C G T A A C T G A C G T A G T C A G T C C G T A A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A A C G T A C T G A C T G C G T A A G T C A C G T A C G T A C G T C G T A
p-value:1e-3
log p-value:-8.428e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets108.0 +/- 0.0bp
Average Position of motif in Background154.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0134.1_Hnf4a_2/Jaspar

Match Rank:1
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---TAAAGTCCATGA-
GGCAAAAGTCCAATAA
A C G T A C G T A C G T A C G T C G T A C G T A C G T A A C T G A C G T A G T C A G T C C G T A A C G T A C T G C G T A A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

HNF4A/MA0114.4/Jaspar

Match Rank:2
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--TAAAGTCCATGA
TCCAAAGTCCAAA-
A C G T A C G T A C G T C G T A C G T A C G T A A C T G A C G T A G T C A G T C C G T A A C G T A C T G C G T A
C A G T G A T C G A T C T G C A T C G A C T G A A C T G C A G T G A T C G A T C C G T A C T G A C T G A A C G T

HNF4G/MA0484.2/Jaspar

Match Rank:3
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--TAAAGTCCATGA
TCCAAAGTCCAGA-
A C G T A C G T A C G T C G T A C G T A C G T A A C T G A C G T A G T C A G T C C G T A A C G T A C T G C G T A
C A G T A G T C G A T C T C G A T C G A C T G A A C T G C A G T G A T C G A T C C G T A T C A G C T G A A C G T

NR1I3/MA1534.1/Jaspar

Match Rank:4
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TAAAGTCCATGA
-AAAGTTCAT--
A C G T C G T A C G T A C G T A A C T G A C G T A G T C A G T C C G T A A C G T A C T G C G T A
A C G T C G T A C T G A C T G A A C T G A C G T C A G T A G T C C T G A G A C T A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:5
Score:0.62
Offset:-7
Orientation:forward strand
Alignment:-------TAAAGTCCATGA
CANAGNNCAAAGTCCA---
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G T A A C T G A C G T A G T C A G T C C G T A A C G T A C T G C G T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TAAAGTCCATGA
AAAAGTCAA---
A C G T C G T A C G T A C G T A A C T G A C G T A G T C A G T C C G T A A C G T A C T G C G T A
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T

RARG(var.3)/MA1553.1/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TAAAGTCCATGA----
--AAGGTCATGACCTT
A C G T C G T A C G T A C G T A A C T G A C G T A G T C A G T C C G T A A C G T A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C T G A T C G A C A T G C A T G C G A T A G T C C T G A G A C T T C A G G C T A G T A C G T A C A G C T G A C T

PH0116.1_Nkx2-9/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TAAAGTCCATGA---
TTTTAAGTACTTAAATT
A C G T A C G T A C G T C G T A C G T A C G T A A C T G A C G T A G T C A G T C C G T A A C G T A C T G C G T A A C G T A C G T A C G T
C G A T G A C T G C A T C G A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C G T A G C T A C G A T G A C T

PH0112.1_Nkx2-3/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TAAAGTCCATGA--
CTTTAAGTACTTAATG
A C G T A C G T A C G T C G T A C G T A C G T A A C T G A C G T A G T C A G T C C G T A A C G T A C T G C G T A A C G T A C G T
G A T C A G C T A G C T G C A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C T G A G A C T C T A G

RARB(var.3)/MA1552.1/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TAAAGTCCATGA----
--AAGGTCATGACCTT
A C G T C G T A C G T A C G T A A C T G A C G T A G T C A G T C C G T A A C G T A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C T G A T C G A A C T G C A T G A G C T A G T C C T G A G A C T T C A G T G C A G T A C G A T C A G C T G A C T