Information for 4-GGAGAGKTTCAA (Motif 5)

A T C G C T A G C T G A A T C G G T C A A C T G A C G T C G A T C G A T A G T C G T C A G T C A
Reverse Opposite:
A C G T A C G T A C T G C G T A C G T A G T C A T A G C A C G T A T G C G A C T G A T C A T G C
p-value:1e-4
log p-value:-1.080e+01
Information Content per bp:1.690
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif481.4
Percentage of Background Sequences with motif0.63%
Average Position of motif in Targets146.0 +/- 54.2bp
Average Position of motif in Background102.3 +/- 72.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GGAGAGKTTCAA-
---CGGTTTCAAA
A T C G C T A G C T G A A T C G G T C A A C T G A C G T C G A T C G A T A G T C G T C A G T C A A C G T
A C G T A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A

NFATC4/MA1525.1/Jaspar

Match Rank:2
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GGAGAGKTTCAA--
----ATTTTCCATN
A T C G C T A G C T G A A T C G G T C A A C T G A C G T C G A T C G A T A G T C G T C A G T C A A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A C G T C A G T A C G T A C G T A G T C A G T C C T G A G A C T A G C T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:3
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GGAGAGKTTCAA--
----ATTTTCCATT
A T C G C T A G C T G A A T C G G T C A A C T G A C G T C G A T C G A T A G T C G T C A G T C A A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A G T C A G T C C T G A A G C T A G C T

NFAT5/MA0606.1/Jaspar

Match Rank:4
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GGAGAGKTTCAA--
----ATTTTCCATT
A T C G C T A G C T G A A T C G G T C A A C T G A C G T C G A T C G A T A G T C G T C A G T C A A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C G A T A C G T A C G T G C A T A G T C A G T C G C T A G A C T C G A T

RELA/MA0107.1/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GGAGAGKTTCAA
-GGGAATTTCC-
A T C G C T A G C T G A A T C G G T C A A C T G A C G T C G A T C G A T A G T C G T C A G T C A
A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T

NFATC1/MA0624.1/Jaspar

Match Rank:6
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GGAGAGKTTCAA--
----ATTTTCCATT
A T C G C T A G C T G A A T C G G T C A A C T G A C G T C G A T C G A T A G T C G T C A G T C A A C G T A C G T
A C G T A C G T A C G T A C G T C G T A G C A T C G A T G A C T G A C T T G A C G A T C C T G A G A C T G C A T

NFATC3/MA0625.1/Jaspar

Match Rank:7
Score:0.53
Offset:4
Orientation:forward strand
Alignment:GGAGAGKTTCAA--
----ATTTTCCATT
A T C G C T A G C T G A A T C G G T C A A C T G A C G T C G A T C G A T A G T C G T C A G T C A A C G T A C G T
A C G T A C G T A C G T A C G T C G T A G A C T C G A T G C A T A G C T G T A C A T G C C T G A G A C T G C A T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:8
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GGAGAGKTTCAA
-GGGAATTTCC-
A T C G C T A G C T G A A T C G G T C A A C T G A C G T C G A T C G A T A G T C G T C A G T C A
A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T

ZBTB12/MA1649.1/Jaspar

Match Rank:9
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GGAGAGKTTCAA---
----NNGTTCCAGNN
A T C G C T A G C T G A A T C G G T C A A C T G A C G T C G A T C G A T A G T C G T C A G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C A G C A T G C T A G G A C T A C G T G T A C A G T C T C G A A T C G T C G A A G C T

NR6A1/MA1541.1/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:forward strand
Alignment:GGAGAGKTTCAA------
-GTCAAGTTCAAGGTCAA
A T C G C T A G C T G A A T C G G T C A A C T G A C G T C G A T C G A T A G T C G T C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C T G A G C T A T G C C T G A T G C A C A T G C A G T A G C T A G T C C G T A G T C A C A T G C A T G A C G T A G T C C T G A C G T A