Information for 6-CGSATAGA (Motif 27)

A G T C A T C G A T C G T C G A C A G T C T G A A C T G C T G A
Reverse Opposite:
A G C T T G A C G A C T G T C A A G C T T A G C A T G C A C T G
p-value:1e-4
log p-value:-1.021e+01
Information Content per bp:1.707
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif66.6
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets118.3 +/- 43.6bp
Average Position of motif in Background95.1 +/- 54.7bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.45
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SPDEF/MA0686.1/Jaspar

Match Rank:1
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CGSATAGA
ACCCGGATGTA
A C G T A C G T A C G T A G T C A T C G A T C G T C G A C A G T C T G A A C T G C T G A
C G T A T G A C T A G C G T A C T A C G C A T G C T G A G C A T T C A G G A C T C T G A

ZSCAN29/MA1602.1/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CGSATAGA--
NCNGTGTAGACG
A C G T A C G T A G T C A T C G A T C G T C G A C A G T C T G A A C T G C T G A A C G T A C G T
A T G C G A T C A G T C T A C G A G C T C T A G C A G T C T G A A C T G T C G A A G T C T C A G

Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer

Match Rank:3
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CGSATAGA--
--TATTGAYY
A G T C A T C G A T C G T C G A C A G T C T G A A C T G C T G A A C G T A C G T
A C G T A C G T G C A T C G T A C G A T G A C T A C T G C T G A G A C T G A T C

PB0077.1_Spdef_1/Jaspar

Match Rank:4
Score:0.58
Offset:-7
Orientation:reverse strand
Alignment:-------CGSATAGA-
AANNATCCGGATGTNN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A T C G A T C G T C G A C A G T C T G A A C T G C T G A A C G T
T C G A C T G A C T G A C G T A C G T A G A C T T A G C T G A C A C T G A C T G C G T A G C A T T C A G G A C T C T G A A G T C

PB0106.1_Arid5a_2/Jaspar

Match Rank:5
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------CGSATAGA---
TNNTTTCGTATTNNANN
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A T C G A T C G T C G A C A G T C T G A A C T G C T G A A C G T A C G T A C G T
A C G T A G C T T C G A G C A T G A C T G A C T A T G C A T C G A C G T T G C A A C G T C G A T A C T G G C A T C T G A G A C T T A C G

PB0024.1_Gcm1_1/Jaspar

Match Rank:6
Score:0.57
Offset:-7
Orientation:forward strand
Alignment:-------CGSATAGA-
TCGTACCCGCATCATT
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A T C G A T C G T C G A C A G T C T G A A C T G C T G A A C G T
G C A T T G A C T C A G C G A T T C G A G T A C G T A C G T A C A T C G A G T C C G T A A G C T T A G C C G T A G A C T C A G T

Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CGSATAGA
RCCGGAARYN
A C G T A C G T A G T C A T C G A T C G T C G A C A G T C T G A A C T G C T G A
T C G A T A G C T G A C C T A G C A T G G C T A G C T A T C A G G A C T C T A G

GCM2/MA0767.1/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CGSATAGA
TACCCGCATN--
A C G T A C G T A C G T A C G T A G T C A T C G A T C G T C G A C A G T C T G A A C T G C T G A
G A C T C T G A A G T C G T A C G T A C T A C G A G T C T C G A A G C T T G C A A C G T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CGSATAGA--
CGTCTAGACA
A G T C A T C G A T C G T C G A C A G T C T G A A C T G C T G A A C G T A C G T
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A

Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CGSATAGA
DCCGGAARYN
A C G T A C G T A G T C A T C G A T C G T C G A C A G T C T G A A C T G C T G A
C T G A T A G C T G A C T A C G C T A G G T C A G C T A T C A G G A C T T C A G