Information for 1-ATWTRTWMCKGC (Motif 1)

C G T A A C G T C G A T A C G T C T A G A C G T C G T A G T A C A G T C A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C G T C A A C T G A C T G C G A T C G T A A G T C C G T A G C A T G T C A A C G T
p-value:1e-7
log p-value:-1.718e+01
Information Content per bp:1.832
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif42.86%
Number of Background Sequences with motif109.2
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets84.7 +/- 34.4bp
Average Position of motif in Background105.7 +/- 75.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0080.1_Tbp_1/Jaspar

Match Rank:1
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----ATWTRTWMCKGC
TCTTTATATATAAATA-
A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G A T A C G T C T A G A C G T C G T A G T A C A G T C A C G T A C T G A G T C
A G C T A G T C G C A T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A G T C A C A G T T C G A A C G T

PB0163.1_Six6_2/Jaspar

Match Rank:2
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------ATWTRTWMCKGC
ANNNGGATATATCCNNN-
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G A T A C G T C T A G A C G T C G T A G T A C A G T C A C G T A C T G A G T C
G T C A C T A G C T A G A G T C T C A G C A T G T C G A A C G T T G C A A G C T C T G A A G C T T G A C A T G C T A G C G C T A A C G T A C G T

Twist2/MA0633.1/Jaspar

Match Rank:3
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---ATWTRTWMCKGC
ACCATATGTT-----
A C G T A C G T A C G T C G T A A C G T C G A T A C G T C T A G A C G T C G T A G T A C A G T C A C G T A C T G A G T C
C T G A G T A C A G T C C G T A A G C T C T G A A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:ATWTRTWMCKGC
--CTGTTCCTGG
C G T A A C G T C G A T A C G T C T A G A C G T C G T A G T A C A G T C A C G T A C T G A G T C
A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-ATWTRTWMCKGC
NTTTTATGAC---
A C G T C G T A A C G T C G A T A C G T C T A G A C G T C G T A G T A C A G T C A C G T A C T G A G T C
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:6
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---ATWTRTWMCKGC-
NAATTTTATTACCNNN
A C G T A C G T A C G T C G T A A C G T C G A T A C G T C T A G A C G T C G T A G T A C A G T C A C G T A C T G A G T C A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:7
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:ATWTRTWMCKGC-
-----YAACBGCC
C G T A A C G T C G A T A C G T C T A G A C G T C G T A G T A C A G T C A C G T A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A G C T C G T A C G T A A G T C A G T C A C T G G A T C G A T C

POL012.1_TATA-Box/Jaspar

Match Rank:8
Score:0.54
Offset:-7
Orientation:reverse strand
Alignment:-------ATWTRTWMCKGC
NNNNNNCTTTTATAN----
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G A T A C G T C T A G A C G T C G T A G T A C A G T C A C G T A C T G A G T C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T A C G T

TBP/MA0108.2/Jaspar

Match Rank:9
Score:0.54
Offset:-7
Orientation:reverse strand
Alignment:-------ATWTRTWMCKGC
NNNNNNCTTTTATAN----
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G A T A C G T C T A G A C G T C G T A G T A C A G T C A C G T A C T G A G T C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T A C G T

Bhlha15/MA0607.1/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--ATWTRTWMCKGC
CCATATGT------
A C G T A C G T C G T A A C G T C G A T A C G T C T A G A C G T C G T A G T A C A G T C A C G T A C T G A G T C
T A G C A G T C C G T A A C G T G T C A A C G T A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T