Information for 3-CTCCTAAY (Motif 26)

A G T C A C G T A G T C A T G C A C G T C G T A C G T A A G C T
Reverse Opposite:
C T G A C G A T A C G T G T C A A T C G A C T G C G T A A C T G
p-value:1e-5
log p-value:-1.195e+01
Information Content per bp:1.851
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif3.93%
Number of Background Sequences with motif751.2
Percentage of Background Sequences with motif1.56%
Average Position of motif in Targets110.6 +/- 58.3bp
Average Position of motif in Background99.2 +/- 54.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0048.1_Hoxa13/Jaspar

Match Rank:1
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----CTCCTAAY----
AAACCTCGTAAAATTT
A C G T A C G T A C G T A C G T A G T C A C G T A G T C A T G C A C G T C G T A C G T A A G C T A C G T A C G T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

HOXC13/MA0907.1/Jaspar

Match Rank:2
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CTCCTAAY--
GCTCGTAAAAA
A C G T A G T C A C G T A G T C A T G C A C G T C G T A C G T A A G C T A C G T A C G T
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----CTCCTAAY----
AAAGCTCGTAAAATTT
A C G T A C G T A C G T A C G T A G T C A C G T A G T C A T G C A C G T C G T A C G T A A G C T A C G T A C G T A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

HOXA9/MA0594.2/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CTCCTAAY--
GTCGTAAACG
A G T C A C G T A G T C A T G C A C G T C G T A C G T A A G C T A C G T A C G T
T C A G G A C T G T A C T C A G A G C T G C T A G C T A G C T A G A T C T A C G

PB0203.1_Zfp691_2/Jaspar

Match Rank:5
Score:0.62
Offset:-7
Orientation:forward strand
Alignment:-------CTCCTAAY--
TACGAGACTCCTCTAAC
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C A T G C A C G T C G T A C G T A A G C T A C G T A C G T
C A G T C T G A A T G C A C T G C G T A C A T G C T G A A T G C A C G T A G T C T G A C A G C T G A T C C G A T T G C A G T C A T A G C

HOXD12/MA0873.1/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTCCTAAY--
AGTCGTAAAAA
A C G T A G T C A C G T A G T C A T G C A C G T C G T A C G T A A G C T A C G T A C G T
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

Hoxa11/MA0911.1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTCCTAAY---
GGTCGTAAAATT
A C G T A G T C A C G T A G T C A T G C A C G T C G T A C G T A A G C T A C G T A C G T A C G T
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T

POL013.1_MED-1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTCCTAAY
GCTCCG---
A C G T A G T C A C G T A G T C A T G C A C G T C G T A C G T A A G C T
A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T

MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CTCCTAAY-----
GACTTTTAWTTTGAA
A C G T A C G T A G T C A C G T A G T C A T G C A C G T C G T A C G T A A G C T A C G T A C G T A C G T A C G T A C G T
C T A G C T G A A G T C G A C T G A C T G A C T A C G T C T G A G C A T C A G T G A C T C G A T T C A G C T G A G T C A

PB0181.1_Spdef_2/Jaspar

Match Rank:10
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CTCCTAAY--
GATAACATCCTAGTAG
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C A T G C A C G T C G T A C G T A A G C T A C G T A C G T
C T A G C G T A A C G T G C T A C T G A A G T C C G T A C G A T G A T C A G T C A G C T G C T A A C T G G C A T C G T A T C A G