Information for 17-TCAGTACACCAA (Motif 25)

A C G T A G T C C G T A A C T G A C G T C G T A A G T C G T C A A G T C A G T C C G T A G T C A
Reverse Opposite:
A C G T A C G T A C T G A C T G A C G T C T A G A C G T C G T A A G T C A C G T A C T G C G T A
p-value:1e-5
log p-value:-1.173e+01
Information Content per bp:1.941
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif5.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets65.6 +/- 39.1bp
Average Position of motif in Background88.7 +/- 34.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXN3/MA1489.1/Jaspar

Match Rank:1
Score:0.55
Offset:3
Orientation:forward strand
Alignment:TCAGTACACCAA
---GTAAACAA-
A C G T A G T C C G T A A C T G A C G T C G T A A G T C G T C A A G T C A G T C C G T A G T C A
A C G T A C G T A C G T A C T G A C G T C G T A C G T A C G T A A G T C C G T A C G T A A C G T

POU6F1(var.2)/MA1549.1/Jaspar

Match Rank:2
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---TCAGTACACCAA
NNCTCATTAT-----
A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C G T C G T A A G T C G T C A A G T C A G T C C G T A G T C A
G C T A A T G C T G A C C G A T T G A C G T C A A C G T A G C T C T G A G A C T A C G T A C G T A C G T A C G T A C G T

PH0116.1_Nkx2-9/Jaspar

Match Rank:3
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TCAGTACACCAA--
TTTTAAGTACTTAAATT
A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C G T C G T A A G T C G T C A A G T C A G T C C G T A G T C A A C G T A C G T
C G A T G A C T G C A T C G A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C G T A G C T A C G A T G A C T

PB0094.1_Zfp128_1/Jaspar

Match Rank:4
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--TCAGTACACCAA---
TTNGGGTACGCCNNANN
A C G T A C G T A C G T A G T C C G T A A C T G A C G T C G T A A G T C G T C A A G T C A G T C C G T A G T C A A C G T A C G T A C G T
G A C T C A G T C T G A T C A G A T C G A C T G A C G T C G T A A G T C C T A G G A T C G T A C G T C A G T C A C G T A C T A G T G C A

PB0016.1_Foxj1_1/Jaspar

Match Rank:5
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TCAGTACACCAA----
AAAGTAAACAAAAATT
A C G T A G T C C G T A A C T G A C G T C G T A A G T C G T C A A G T C A G T C C G T A G T C A A C G T A C G T A C G T A C G T
G C T A C G A T G C T A C T A G G A C T G T C A G C T A C G T A G A T C C G T A G T C A C G T A G T C A C G T A C A G T C A G T

PB0015.1_Foxa2_1/Jaspar

Match Rank:6
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--TCAGTACACCAA---
AAAAAGTAAACAAAGAC
A C G T A C G T A C G T A G T C C G T A A C T G A C G T C G T A A G T C G T C A A G T C A G T C C G T A G T C A A C G T A C G T A C G T
G C T A C G T A G C T A C G T A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A G C T A C G T A T A C G C T G A A G T C

PH0079.1_Hoxd3/Jaspar

Match Rank:7
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----TCAGTACACCAA
ANGNTAATTANCNCAN
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C G T C G T A A G T C G T C A A G T C A G T C C G T A G T C A
T C G A T A C G C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G C A G A T C G A C T G T A C C G T A C T G A

PB0096.1_Zfp187_1/Jaspar

Match Rank:8
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---TCAGTACACCAA
TTATTAGTACATAN-
A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C G T C G T A A G T C G T C A A G T C A G T C C G T A G T C A
C A G T C G A T C G T A G A C T C G A T T C G A C T A G G A C T G C T A A G T C C T G A A G C T C T G A T C G A A C G T

PB0156.1_Plagl1_2/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--TCAGTACACCAA---
NNNNGGTACCCCCCANN
A C G T A C G T A C G T A G T C C G T A A C T G A C G T C G T A A G T C G T C A A G T C A G T C C G T A G T C A A C G T A C G T A C G T
G C T A C T G A C T A G C A T G C A T G C A T G G A C T C G T A A G T C T A G C A G T C A G T C G A T C G A T C C G T A T A C G G A T C

Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--TCAGTACACCAA
TTTCATTRCC----
A C G T A C G T A C G T A G T C C G T A A C T G A C G T C G T A A G T C G T C A A G T C A G T C C G T A G T C A
G A C T A G C T G A C T A T G C G C T A A C G T A C G T C T G A A T G C G A T C A C G T A C G T A C G T A C G T