Information for 2-CAGTATGTAKGT (Motif 2)

A G T C C G T A C T A G A G C T G T C A A C G T A C T G C G A T C T G A C A T G A T C G A C G T
Reverse Opposite:
G T C A A T G C G T A C A G C T C G T A A G T C G T C A A C G T C T G A A G T C G C A T A C T G
p-value:1e-15
log p-value:-3.575e+01
Information Content per bp:1.781
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.71%
Number of Background Sequences with motif40.1
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets85.5 +/- 48.6bp
Average Position of motif in Background82.8 +/- 67.5bp
Strand Bias (log2 ratio + to - strand density)-2.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZKSCAN1/MA1585.1/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CAGTATGTAKGT
ATAGTAGGTG---
A C G T A G T C C G T A C T A G A G C T G T C A A C G T A C T G C G A T C T G A C A T G A T C G A C G T
T C G A A G C T T G C A C T A G A C G T G T C A A T C G C A T G A G C T T A C G A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CAGTATGTAKGT
CCACACAGCAGGAGA--
A C G T A C G T A C G T A C G T A C G T A G T C C G T A C T A G A G C T G T C A A C G T A C T G C G A T C T G A C A T G A T C G A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CAGTATGTAKGT
DCTCAGCAGG-----
A C G T A C G T A C G T A G T C C G T A C T A G A G C T G T C A A C G T A C T G C G A T C T G A C A T G A T C G A C G T
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CAGTATGTAKGT
CCACACAGCAGGAGA--
A C G T A C G T A C G T A C G T A C G T A G T C C G T A C T A G A G C T G T C A A C G T A C T G C G A T C T G A C A T G A T C G A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CAGTATGTAKGT
GAGCACAGCAGGACA--
A C G T A C G T A C G T A C G T A C G T A G T C C G T A C T A G A G C T G T C A A C G T A C T G C G A T C T G A C A T G A T C G A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CAGTATGTAKGT
CACAGCAGGGG---
A C G T A C G T A G T C C G T A C T A G A G C T G T C A A C G T A C T G C G A T C T G A C A T G A T C G A C G T
T A G C T C G A A G T C T G C A T A C G A G T C T C G A A T C G A C T G T A C G T C A G A C G T A C G T A C G T

ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CAGTATGTAKGT
ACAGGATGTGGT-
A C G T A G T C C G T A C T A G A G C T G T C A A C G T A C T G C G A T C T G A C A T G A T C G A C G T
T C G A T A G C G T C A A C T G C T A G C G T A C G A T A C T G A C G T A C T G A C T G A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CAGTATGTAKGT----
NTTNTATGAATGTGNNC
A C G T A G T C C G T A C T A G A G C T G T C A A C G T A C T G C G A T C T G A C A T G A T C G A C G T A C G T A C G T A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

Zic2/MA1629.1/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CAGTATGTAKGT
CTCACAGCAGGGGG--
A C G T A C G T A C G T A C G T A G T C C G T A C T A G A G C T G T C A A C G T A C T G C G A T C T G A C A T G A T C G A C G T
T G A C C A G T T G A C G C T A T A G C G T C A T A C G A G T C C T G A C A T G A T C G C T A G T C A G T C A G A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CAGTATGTAKGT
CACAGCAGGGGG--
A C G T A C G T A G T C C G T A C T A G A G C T G T C A A C G T A C T G C G A T C T G A C A T G A T C G A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T