Information for 3-CGAGCGGC (Motif 43)

A G T C A C T G C G T A A C T G A G T C A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C A C T G A G T C A C G T A G T C A C T G
p-value:1e-2
log p-value:-5.888e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif7.14%
Number of Background Sequences with motif12.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets165.0 +/- 0.0bp
Average Position of motif in Background112.7 +/- 81.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZFP57/MA1583.1/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CGAGCGGC-----
NNTGCGGCAANNN
A G T C A C T G C G T A A C T G A G T C A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T
T C G A A T G C A G C T T A C G G A T C A T C G C T A G A T G C T G C A T G C A A G C T T A C G T A G C

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CGAGCGGC
-CAGCC--
A G T C A C T G C G T A A C T G A G T C A C T G A C T G A G T C
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T

Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer

Match Rank:3
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CGAGCGGC----
--TGCSGCANTN
A G T C A C T G C G T A A C T G A G T C A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A G C T T C A G G A T C A T C G T C A G A T G C T G C A G T C A C G A T C T A G

MAZ/MA1522.1/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CGAGCGGC-
GGGGAGGGGNN
A C G T A C G T A G T C A C T G C G T A A C T G A G T C A C T G A C T G A G T C A C G T
T C A G T C A G A T C G A C T G G T C A A T C G A T C G A T C G T A C G T A G C T A C G

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CGAGCGGC
GAGSCCGAGC---
A C G T A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C T G A G T C A C T G A C T G A G T C
A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CGAGCGGC
BTBRAGTGSN
A C G T A C G T A G T C A C T G C G T A A C T G A G T C A C T G A C T G A G T C
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CGAGCGGC--
HAWGRGGCCM
A G T C A C T G C G T A A C T G A G T C A C T G A C T G A G T C A C G T A C G T
G A C T T C G A C G A T T A C G C T A G T A C G A C T G A T G C G T A C G T A C

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CGAGCGGC-
TTGAGTGSTT
A C G T A G T C A C T G C G T A A C T G A G T C A C T G A C T G A G T C A C G T
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CGAGCGGC-
CTTGAGTGGCT
A C G T A C G T A G T C A C T G C G T A A C T G A G T C A C T G A C T G A G T C A C G T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

POL013.1_MED-1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CGAGCGGC
CGGAGC---
A C G T A G T C A C T G C G T A A C T G A G T C A C T G A C T G A G T C
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T