Information for 3-ACAATATATGTA (Motif 3)

C G T A A G T C C G T A C G T A A C G T C G T A A C G T C G T A A C G T A C T G A C G T C G T A
Reverse Opposite:
A C G T C G T A A G T C C G T A A C G T C G T A A C G T C G T A A C G T A C G T A C T G A C G T
p-value:1e-4
log p-value:-1.063e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0183.1_Sry_2/Jaspar

Match Rank:1
Score:0.67
Offset:-7
Orientation:forward strand
Alignment:-------ACAATATATGTA
TCACGGAACAATAGGTG--
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A C G T A A C G T C G T A A C G T C G T A A C G T A C T G A C G T C G T A
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G A C G T A C G T

PH0082.1_Irx2/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:ACAATATATGTA-----
TAAATACATGTAAAATT
C G T A A G T C C G T A C G T A A C G T C G T A A C G T C G T A A C G T A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T
C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T

PH0084.1_Irx3_2/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-ACAATATATGTA----
NNTATTACATGTANNNT
A C G T C G T A A G T C C G T A C G T A A C G T C G T A A C G T C G T A A C G T A C T G A C G T C G T A A C G T A C G T A C G T A C G T
G C A T C T G A G C A T G C T A A C G T C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A C G A T G C T A G C A T G C A T

PB0074.1_Sox8_1/Jaspar

Match Rank:4
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------ACAATATATGTA
TNNAGAACAATANATNN-
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A C G T A A C G T C G T A A C G T C G T A A C G T A C T G A C G T C G T A
G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C A C G T

PH0087.1_Irx6/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:ACAATATATGTA-----
AAAATACATGTAAAAAT
C G T A A G T C C G T A C G T A A C G T C G T A A C G T C G T A A C G T A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T
G C T A G C T A G C T A C T G A C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G T C A C G T A C G T A G C T A C G A T

PH0083.1_Irx3_1/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:ACAATATATGTA-----
AAAATACATGTAATACT
C G T A A G T C C G T A C G T A A C G T C G T A A C G T C G T A A C G T A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T
C G T A C T G A C G A T C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A T G C A C G A T C G T A G A T C C G A T

PH0085.1_Irx4/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ACAATATATGTA-----
AATATACATGTAAAACA
C G T A A G T C C G T A C G T A A C G T C G T A A C G T C G T A A C G T A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T
C G T A C G T A G C A T C T G A C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G T C A C G T A C G T A A G T C C G T A

PB0065.1_Sox15_1/Jaspar

Match Rank:8
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------ACAATATATGTA
TAGTGAACAATAGATTT-
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A C G T A A C G T C G T A A C G T C G T A A C G T A C T G A C G T C G T A
G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-ACAATATATGTA
GACAATGNN----
A C G T C G T A A G T C C G T A C G T A A C G T C G T A A C G T C G T A A C G T A C T G A C G T C G T A
T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T A C G T A C G T A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:10
Score:0.63
Offset:-7
Orientation:reverse strand
Alignment:-------ACAATATATGTA
NNNNNGAACAATTGANN--
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A C G T A A C G T C G T A A C G T C G T A A C G T A C T G A C G T C G T A
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T A C G T A C G T