Information for 2-ACAGGGCA (Motif 3)

C G T A G T A C C G T A A C T G A C T G A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C A G T C A G T C A C G T A C T G A C G T
p-value:1e-4
log p-value:-1.029e+01
Information Content per bp:1.950
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif42.86%
Number of Background Sequences with motif1223.7
Percentage of Background Sequences with motif1.00%
Average Position of motif in Targets118.3 +/- 40.6bp
Average Position of motif in Background103.4 +/- 94.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A1/MA1112.2/Jaspar

Match Rank:1
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--ACAGGGCA--
TTAAAGGTCAAA
A C G T A C G T C G T A G T A C C G T A A C T G A C T G A C T G A G T C C G T A A C G T A C G T
C A G T G C A T C T G A C T G A T C G A C A T G C A T G A C G T A G T C C T G A T C G A C T G A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-ACAGGGCA-
CAAAGGTCAG
A C G T C G T A G T A C C G T A A C T G A C T G A C T G A G T C C G T A A C G T
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

PB0049.1_Nr2f2_1/Jaspar

Match Rank:3
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----ACAGGGCA----
TCTCAAAGGTCACGAG
A C G T A C G T A C G T A C G T C G T A G T A C C G T A A C T G A C T G A C T G A G T C C G T A A C G T A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

HIC2/MA0738.1/Jaspar

Match Rank:4
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:ACAGGGCA-
NGTGGGCAT
C G T A G T A C C G T A A C T G A C T G A C T G A G T C C G T A A C G T
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:5
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----ACAGGGCA
ANGNAAAGGTCA
A C G T A C G T A C G T A C G T C G T A G T A C C G T A A C T G A C T G A C T G A G T C C G T A
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

PB0053.1_Rara_1/Jaspar

Match Rank:6
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----ACAGGGCA----
TCTCAAAGGTCACCTG
A C G T A C G T A C G T A C G T C G T A G T A C C G T A A C T G A C T G A C T G A G T C C G T A A C G T A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--ACAGGGCA
WDNCTGGGCA
A C G T A C G T C G T A G T A C C G T A A C T G A C T G A C T G A G T C C G T A
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:8
Score:0.71
Offset:0
Orientation:forward strand
Alignment:ACAGGGCA
TRAGGTCA
C G T A G T A C C G T A A C T G A C T G A C T G A G T C C G T A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A

PB0133.1_Hic1_2/Jaspar

Match Rank:9
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---ACAGGGCA-----
NNNNTTGGGCACNNCN
A C G T A C G T A C G T C G T A G T A C C G T A A C T G A C T G A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:ACAGGGCA-
TNNGGGCAG
C G T A G T A C C G T A A C T G A C T G A C T G A G T C C G T A A C G T
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G