Information for 7-GCAGCAGC (Motif 29)

A C T G A G T C C G T A A C T G A G T C C G T A T C A G A G T C
Reverse Opposite:
A C T G A G T C A C G T A C T G A G T C A C G T A C T G G T A C
p-value:1e-6
log p-value:-1.570e+01
Information Content per bp:1.907
Number of Target Sequences with motif240.0
Percentage of Target Sequences with motif3.34%
Number of Background Sequences with motif1005.2
Percentage of Background Sequences with motif2.36%
Average Position of motif in Targets102.9 +/- 55.9bp
Average Position of motif in Background99.9 +/- 57.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:1
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GCAGCAGC--
CACAGCAGGGG
A C G T A C T G A G T C C G T A A C T G A G T C C G T A T C A G A G T C A C G T A C G T
T A G C T C G A A G T C T G C A T A C G A G T C T C G A A T C G A C T G T A C G T C A G

OSR2/MA1646.1/Jaspar

Match Rank:2
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--GCAGCAGC--
AAACAGAAGCAG
A C G T A C G T A C T G A G T C C G T A A C T G A G T C C G T A T C A G A G T C A C G T A C G T
G T C A G T C A T G C A T A G C C T G A T A C G C G T A T C G A C T A G A G T C G T C A T C A G

NHLH1/MA0048.2/Jaspar

Match Rank:3
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GCAGCAGC-
CGCAGCTGCG
A C G T A C T G A G T C C G T A A C T G A G T C C G T A T C A G A G T C A C G T
T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:4
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GCAGCAGC---
AGCAGCTGCTNN
A C G T A C T G A G T C C G T A A C T G A G T C C G T A T C A G A G T C A C G T A C G T A C G T
C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C

Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer

Match Rank:5
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---GCAGCAGC-
SSRGCAGCTGCH
A C G T A C G T A C G T A C T G A G T C C G T A A C T G A G T C C G T A T C A G A G T C A C G T
T A C G T A C G C T A G T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G T C G A C T

MYOG/MA0500.2/Jaspar

Match Rank:6
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--GCAGCAGC--
CAGCAGCTGCTG
A C G T A C G T A C T G A G T C C G T A A C T G A G T C C G T A T C A G A G T C A C G T A C G T
T A G C C T G A T C A G A G T C T C G A A C T G T G A C A G C T T C A G A G T C G A C T A T C G

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GCAGCAGC--
NCAGCTGCTG
A C T G A G T C C G T A A C T G A G T C C G T A T C A G A G T C A C G T A C G T
T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G

ASCL1/MA1100.2/Jaspar

Match Rank:8
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GCAGCAGC-
NGCAGCTGCN
A C G T A C T G A G T C C G T A A C T G A G T C C G T A T C A G A G T C A C G T
T C A G T C A G G A T C G T C A A T C G T A G C C G A T C T A G A G T C A G T C

Ascl2/MA0816.1/Jaspar

Match Rank:9
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-GCAGCAGC-
AGCAGCTGCT
A C G T A C T G A G T C C G T A A C T G A G T C C G T A T C A G A G T C A C G T
C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GCAGCAGC-
-CAGCTGNT
A C T G A G T C C G T A A C T G A G T C C G T A T C A G A G T C A C G T
A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T