Information for 23-CTCAAGCACTCA (Motif 29)

A G T C A C G T A G T C C G T A C G T A A C T G A G T C C G T A A G T C A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A C T G A C G T A C T G A G T C A C G T A C G T A C T G C G T A A C T G
p-value:1e-3
log p-value:-8.729e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets8.0 +/- 0.0bp
Average Position of motif in Background171.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:1
Score:0.75
Offset:3
Orientation:forward strand
Alignment:CTCAAGCACTCA-
---AAGCACTTAA
A G T C A C G T A G T C C G T A C G T A A C T G A G T C C G T A A G T C A C G T A G T C C G T A A C G T
A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.71
Offset:3
Orientation:forward strand
Alignment:CTCAAGCACTCA--
---AGCCACTCAAG
A G T C A C G T A G T C C G T A C G T A A C T G A G T C C G T A A G T C A C G T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:3
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CTCAAGCACTCA-
---MRSCACTYAA
A G T C A C G T A G T C C G T A C G T A A C T G A G T C C G T A A G T C A C G T A G T C C G T A A C G T
A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CTCAAGCACTCA-
---AASCACTCAA
A G T C A C G T A G T C C G T A C G T A A C T G A G T C C G T A A G T C A C G T A G T C C G T A A C G T
A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

PH0112.1_Nkx2-3/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTCAAGCACTCA---
CTTTAAGTACTTAATG
A C G T A G T C A C G T A G T C C G T A C G T A A C T G A G T C C G T A A G T C A C G T A G T C C G T A A C G T A C G T A C G T
G A T C A G C T A G C T G C A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C T G A G A C T C T A G

NKX2-5/MA0063.2/Jaspar

Match Rank:6
Score:0.66
Offset:4
Orientation:forward strand
Alignment:CTCAAGCACTCA---
----ACCACTCAAAA
A G T C A C G T A G T C C G T A C G T A A C T G A G T C C G T A A G T C A C G T A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A T G A C G A T C C T G A G A T C G C A T G A T C C G T A G C T A T C G A G C T A

NKX2-2/MA1645.1/Jaspar

Match Rank:7
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CTCAAGCACTCA----
--TAACCACTCAAGAA
A G T C A C G T A G T C C G T A C G T A A C T G A G T C C G T A A G T C A C G T A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G A C T G C T A C G T A T G A C G A T C G C T A G T A C G C A T A T G C G T C A T C G A T C A G G C T A G C T A

ZBTB6/MA1581.1/Jaspar

Match Rank:8
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CTCAAGCACTCA
NNGGCTCAAGGNN---
A C G T A C G T A C G T A C G T A G T C A C G T A G T C C G T A C G T A A C T G A G T C C G T A A G T C A C G T A G T C C G T A
A T G C A C T G C T A G C A T G A G T C C A G T A T G C G T C A T C G A C A T G A T C G T C G A G T A C A C G T A C G T A C G T

ZNF274/MA1592.1/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTCAAGCACTCA----
NNCGAGAACTCATACN
A G T C A C G T A G T C C G T A C G T A A C T G A G T C C G T A A G T C A C G T A G T C C G T A A C G T A C G T A C G T A C G T
G T C A T C A G G A T C C T A G C G T A C A T G C T G A G T C A A T G C G A C T A G T C T G C A G A C T T C G A A G T C G A T C

PH0116.1_Nkx2-9/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CTCAAGCACTCA---
NATTTAAGTACTTNAAA
A C G T A C G T A G T C A C G T A G T C C G T A C G T A A C T G A G T C C G T A A G T C A C G T A G T C C G T A A C G T A C G T A C G T
C T G A G C T A C G A T G C A T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T G C T A C G T A C T G A G C T A