Information for 1-GAAGACCTDACA (Motif 1)

A C T G C G T A C G T A C A T G C G T A A G T C A G T C C G A T C G T A C G T A A G T C C G T A
Reverse Opposite:
C G A T A C T G A C G T G A C T C G T A A C T G A C T G C G A T G T A C C G A T C G A T G T A C
p-value:1e-6
log p-value:-1.448e+01
Information Content per bp:1.756
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1066.3
Percentage of Background Sequences with motif0.93%
Average Position of motif in Targets127.2 +/- 44.1bp
Average Position of motif in Background100.8 +/- 88.1bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GAAGACCTDACA-----
CAAATCCAGACATCACA
A C T G C G T A C G T A C A T G C G T A A G T C A G T C C G A T C G T A C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GAAGACCTDACA
--TGACCTYA--
A C T G C G T A C G T A C A T G C G T A A G T C A G T C C G A T C G T A C G T A A G T C C G T A
A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:GAAGACCTDACA-
-----CCAGACAG
A C T G C G T A C G T A C A T G C G T A A G T C A G T C C G A T C G T A C G T A A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

SOX12/MA1561.1/Jaspar

Match Rank:4
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GAAGACCTDACA---
----ACCGAACAATG
A C T G C G T A C G T A C A T G C G T A A G T C A G T C C G A T C G T A C G T A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T C A G T A C G A T C C A T G T G C A T C G A A G T C C G T A T G C A G A C T T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:GAAGACCTDACA---
-----CCAGACRSVB
A C T G C G T A C G T A C A T G C G T A A G T C A G T C C G A T C G T A C G T A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad4/MA1153.1/Jaspar

Match Rank:6
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GAAGACCTDACA
----TCTAGACA
A C T G C G T A C G T A C A T G C G T A A G T C A G T C C G A T C G T A C G T A A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GAAGACCTDACA
--TGACCT----
A C T G C G T A C G T A C A T G C G T A A G T C A G T C C G A T C G T A C G T A A G T C C G T A
A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T

Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GAAGACCTDACA--
--AGACCACCCASR
A C T G C G T A C G T A C A T G C G T A A G T C A G T C C G A T C G T A C G T A A G T C C G T A A C G T A C G T
A C G T A C G T C T G A A C T G T C G A T G A C G A T C G C T A T A G C T G A C G T A C C G T A T A G C T C A G

PB0121.1_Foxj3_2/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAAGACCTDACA-----
AACACCAAAACAAAGGA
A C T G C G T A C G T A C A T G C G T A A G T C A G T C C G A T C G T A C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

PH0140.1_Pknox1/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAAGACCTDACA----
AAAGACCTGTCAATCC
A C T G C G T A C G T A C A T G C G T A A G T C A G T C C G A T C G T A C G T A A G T C C G T A A C G T A C G T A C G T A C G T
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C