Information for 1-ACATAGTTCTGC (Motif 1)

C T G A G A T C C G T A A C G T C T G A A C T G A C G T G A C T G T A C A G C T C A T G A G T C
Reverse Opposite:
C T A G G T A C C T G A A C T G C G T A G T C A G T A C A G C T G T C A C G A T C A T G A G C T
p-value:1e-8
log p-value:-1.859e+01
Information Content per bp:1.675
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif62.50%
Number of Background Sequences with motif1063.4
Percentage of Background Sequences with motif1.09%
Average Position of motif in Targets64.2 +/- 53.6bp
Average Position of motif in Background103.3 +/- 78.5bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX8/MA0868.2/Jaspar

Match Rank:1
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:ACATAGTTCTGC
CCATTGTTCT--
C T G A G A T C C G T A A C G T C T G A A C T G A C G T G A C T G T A C A G C T C A T G A G T C
A T G C G A T C C G T A C A G T C G A T T C A G C G A T G A C T G A T C A C G T A C G T A C G T

PB0063.1_Sox13_1/Jaspar

Match Rank:2
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---ACATAGTTCTGC-
AANTTATTGTTCTNNA
A C G T A C G T A C G T C T G A G A T C C G T A A C G T C T G A A C T G A C G T G A C T G T A C A G C T C A T G A G T C A C G T
C G T A C G T A G C A T G C A T G C A T C G T A A G C T C G A T C T A G C G A T G A C T G T A C A G C T G C A T C T G A G C T A

SOX14/MA1562.1/Jaspar

Match Rank:3
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:ACATAGTTCTGC
-CATTGTTCGG-
C T G A G A T C C G T A A C G T C T G A A C T G A C G T G A C T G T A C A G C T C A T G A G T C
A C G T G T A C T G C A C A G T A C G T T C A G C G A T G C A T G T A C C T A G A C T G A C G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:4
Score:0.55
Offset:1
Orientation:forward strand
Alignment:ACATAGTTCTGC----
-CTTTGTTATGCAAAT
C T G A G A T C C G T A A C G T C T G A A C T G A C G T G A C T G T A C A G C T C A T G A G T C A C G T A C G T A C G T A C G T
A C G T A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:ACATAGTTCTGC----
-CATTGTTATGCAAAT
C T G A G A T C C G T A A C G T C T G A A C T G A C G T G A C T G T A C A G C T C A T G A G T C A C G T A C G T A C G T A C G T
A C G T G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

PB0062.1_Sox12_1/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:forward strand
Alignment:ACATAGTTCTGC--
TAATTGTTCTAAAC
C T G A G A T C C G T A A C G T C T G A A C T G A C G T G A C T G T A C A G C T C A T G A G T C A C G T A C G T
G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C

PB0070.1_Sox30_1/Jaspar

Match Rank:7
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----ACATAGTTCTGC
ANNTCCATTGTTCNNN
A C G T A C G T A C G T A C G T C T G A G A T C C G T A A C G T C T G A A C T G A C G T G A C T G T A C A G C T C A T G A G T C
C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T

PB0072.1_Sox5_1/Jaspar

Match Rank:8
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---ACATAGTTCTGC-
NNTTTATTGTTCTNNN
A C G T A C G T A C G T C T G A G A T C C G T A A C G T C T G A A C T G A C G T G A C T G T A C A G C T C A T G A G T C A C G T
G C T A C G A T G C A T G A C T G C A T C G T A G A C T G C A T C T A G G A C T A G C T G A T C G A C T G C T A C G T A G C T A

Sox5/MA0087.1/Jaspar

Match Rank:9
Score:0.52
Offset:2
Orientation:forward strand
Alignment:ACATAGTTCTGC
--ATTGTTA---
C T G A G A T C C G T A A C G T C T G A A C T G A C G T G A C T G T A C A G C T C A T G A G T C
A C G T A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:ACATAGTTCTGC
CCATTGTTTT--
C T G A G A T C C G T A A C G T C T G A A C T G A C G T G A C T G T A C A G C T C A T G A G T C
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T A C G T