Information for 2-AATTCGCTAG (Motif 8)

C G T A C G T A A C G T A C G T A G T C A C T G A G T C A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A A C T G A G T C A C T G C G T A C G T A A C G T A C G T
p-value:1e-3
log p-value:-9.074e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets29.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX4/MA0068.2/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AATTCGCTAG
CTAATTAG----
A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C T G A G T C A C G T C G T A A C T G
A G T C C A G T C G T A G T C A A C G T C G A T G T C A T C A G A C G T A C G T A C G T A C G T

PH0074.1_Hoxd1/Jaspar

Match Rank:2
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------AATTCGCTAG-
TAAACTAATTAGCTGTA
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C T G A G T C A C G T C G T A A C T G A C G T
C G A T T C G A G C T A T C A G A G T C G A C T T G C A C G T A C G A T A C G T C T G A T C A G A G T C A C G T A C T G C A G T G C T A

PH0024.1_Dlx5/Jaspar

Match Rank:3
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----AATTCGCTAG-
GGGGTAATTAGCTCTG
A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C T G A G T C A C G T C G T A A C T G A C G T
A T C G A T C G T C A G T C A G G A C T G T C A C G T A G A C T C A G T C T G A T A C G A G T C A C G T T G A C A C G T A T C G

PH0154.1_Prrx1/Jaspar

Match Rank:4
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------AATTCGCTAG-
GTAACTAATTAACTACT
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C T G A G T C A C G T C G T A A C T G A C G T
T A C G A C G T G T C A T C G A A G T C G A C T T C G A C T G A A G C T A G C T C T G A T C G A A G T C C A G T C T G A T A G C A G C T

PH0094.1_Lhx4/Jaspar

Match Rank:5
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------AATTCGCTAG-
TAAACTAATTAGCTTTG
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C T G A G T C A C G T C G T A A C T G A C G T
C A G T G T C A C G T A T C G A A T G C G A C T T C G A C T G A A G C T A G C T C T G A A T C G A T G C A C G T C G A T A C G T C T A G

PB0171.1_Sox18_2/Jaspar

Match Rank:6
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------AATTCGCTAG
NNNNTGAATTCANNNC
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C T G A G T C A C G T C G T A A C T G
A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C

PB0068.1_Sox1_1/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----AATTCGCTAG--
AATCAATTCAATAATT
A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C T G A G T C A C G T C G T A A C T G A C G T A C G T
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

PH0032.1_Evx2/Jaspar

Match Rank:8
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------AATTCGCTAG-
ANCGCTAATTAGCGGTN
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C T G A G T C A C G T C G T A A C T G A C G T
C G T A T G A C T G A C T A C G T A G C A G C T T G C A C G T A A C G T A C G T C T G A T A C G A G T C C A T G C T A G A C G T T C A G

VSX2/MA0726.1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AATTCGCTAG
NTAATTAG----
A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C T G A G T C A C G T C G T A A C T G
T G A C G A C T C G T A C T G A A C G T C G A T C T G A T C A G A C G T A C G T A C G T A C G T

VSX1/MA0725.1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AATTCGCTAG
NTAATTAG----
A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C T G A G T C A C G T C G T A A C T G
T G C A G A C T G T C A C T G A A G C T C A G T C T G A C T A G A C G T A C G T A C G T A C G T