Information for 17-CCTGSTGRCACT (Motif 28)

A G T C G A T C A C G T A C T G A T C G C G A T A T C G T C A G A G T C G T C A A G T C A C G T
Reverse Opposite:
C G T A A C T G A C G T A C T G A G T C A T G C C G T A T A G C G T A C C G T A C T A G A C T G
p-value:1e-7
log p-value:-1.628e+01
Information Content per bp:1.801
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif21.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets94.3 +/- 52.0bp
Average Position of motif in Background112.0 +/- 64.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.71
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CCTGSTGRCACT
NNCCTGCTGNG---
A C G T A C G T A G T C G A T C A C G T A C T G A T C G C G A T A T C G T C A G A G T C G T C A A G T C A C G T
A G T C A T G C T G A C T A G C A G C T T C A G A T G C A C G T T C A G A G C T A T C G A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.58
Offset:5
Orientation:forward strand
Alignment:CCTGSTGRCACT---
-----AASCACTCAA
A G T C G A T C A C G T A C T G A T C G C G A T A T C G T C A G A G T C G T C A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

Zic2/MA1629.1/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCTGSTGRCACT
CCCCCTGCTGTGNN-
A C G T A C G T A C G T A G T C G A T C A C G T A C T G A T C G C G A T A T C G T C A G A G T C G T C A A G T C A C G T
A G T C A G T C G A T C T A G C G T A C G A C T T C A G A T G C C A G T A T C G C G A T A C T G G T C A A C T G A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:4
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:CCTGSTGRCACT---
-----MRSCACTYAA
A G T C G A T C A C G T A C T G A T C G C G A T A T C G T C A G A G T C G T C A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.58
Offset:6
Orientation:forward strand
Alignment:CCTGSTGRCACT----
------RSCACTYRAG
A G T C G A T C A C G T A C T G A T C G C G A T A T C G T C A G A G T C G T C A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

PKNOX1/MA0782.2/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CCTGSTGRCACT----
-NNGCTGTCACTCANN
A G T C G A T C A C G T A C T G A T C G C G A T A T C G T C A G A G T C G T C A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T G A C T T C G A A T C G T G A C G C A T C T A G G A C T T A G C G C T A T G A C G A C T A G T C G C T A C G T A G C T A

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCTGSTGRCACT
CNTGTTTACATA
A G T C G A T C A C G T A C T G A T C G C G A T A T C G T C A G A G T C G T C A A G T C A C G T
A T G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CCTGSTGRCACT
CCCCCTGCTGTG---
A C G T A C G T A C G T A G T C G A T C A C G T A C T G A T C G C G A T A T C G T C A G A G T C G T C A A G T C A C G T
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T

SCRT2/MA0744.2/Jaspar

Match Rank:9
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----CCTGSTGRCACT
NNNCACCTGTTGCTNN-
A C G T A C G T A C G T A C G T A C G T A G T C G A T C A C G T A C T G A T C G C G A T A T C G T C A G A G T C G T C A A G T C A C G T
C G T A C T G A G T A C G T A C C T G A G T A C G A T C C G A T A T C G G A C T C A G T C T A G T G A C G C A T A G C T G A C T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:10
Score:0.57
Offset:7
Orientation:forward strand
Alignment:CCTGSTGRCACT----
-------CCACTTGAA
A G T C G A T C A C G T A C T G A T C G C G A T A T C G T C A G A G T C G T C A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A