Information for 5-AATACATCGC (Motif 18)

C G T A C G T A A C G T C G T A A G T C C G T A A C G T A G T C A C T G A G T C
Reverse Opposite:
A C T G A G T C A C T G C G T A A C G T A C T G A C G T C G T A A C G T A C G T
p-value:1e-3
log p-value:-8.488e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets170.0 +/- 0.0bp
Average Position of motif in Background129.2 +/- 0.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rhox11/MA0629.1/Jaspar

Match Rank:1
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----AATACATCGC---
TCNNTTTACAGCGNNNT
A C G T A C G T A C G T A C G T C G T A C G T A A C G T C G T A A G T C C G T A A C G T A G T C A C T G A G T C A C G T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

PH0157.1_Rhox11_1/Jaspar

Match Rank:2
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----AATACATCGC---
TCNNTTTACAGCGNNNT
A C G T A C G T A C G T A C G T C G T A C G T A A C G T C G T A A G T C C G T A A C G T A G T C A C T G A G T C A C G T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

DMRT3/MA0610.1/Jaspar

Match Rank:3
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---AATACATCGC
NTTGATACATT--
A C G T A C G T A C G T C G T A C G T A A C G T C G T A A G T C C G T A A C G T A G T C A C T G A G T C
C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:4
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AATACATCGC
GYCATCMATCAT
A C G T A C G T C G T A C G T A A C G T C G T A A G T C C G T A A C G T A G T C A C T G A G T C
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

PH0158.1_Rhox11_2/Jaspar

Match Rank:5
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----AATACATCGC---
TCNCTTTACAGCGNNNT
A C G T A C G T A C G T A C G T C G T A C G T A A C G T C G T A A G T C C G T A A C G T A G T C A C T G A G T C A C G T A C G T A C G T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T

PH0044.1_Homez/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AATACATCGC-------
AAAACATCGTTTTTAAG
C G T A C G T A A C G T C G T A A G T C C G T A A C G T A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G T A G C A T G C T A G C T A T G A C G C T A A C G T G T A C A C T G C G A T C G A T G C A T G A C T A G C T G C T A C T G A C T A G

PB0098.1_Zfp410_1/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AATACATCGC------
NNNTCCATCCCATAANN
A C G T C G T A C G T A A C G T C G T A A G T C C G T A A C G T A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T G T C A A C G T T G A C G A T C G C T A A G C T G A T C G A T C G A T C C G T A C A G T G C T A G T C A A G C T G C T A

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AATACATCGC
YCATCMATCA-
A C G T C G T A C G T A A C G T C G T A A G T C C G T A A C G T A G T C A C T G A G T C
G A T C G T A C C T G A A C G T G A T C G T C A C T G A A C G T G A T C G C T A A C G T

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AATACATCGC--
NNCCATAAATCATNN
A C G T A C G T A C G T C G T A C G T A A C G T C G T A A G T C C G T A A C G T A G T C A C T G A G T C A C G T A C G T
C T G A T C A G G A T C G T A C T C G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G C A T G C A T G A C T

PB0163.1_Six6_2/Jaspar

Match Rank:10
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----AATACATCGC--
ANNNGGATATATCCNNN
A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T C G T A A G T C C G T A A C G T A G T C A C T G A G T C A C G T A C G T
G T C A C T A G C T A G A G T C T C A G C A T G T C G A A C G T T G C A A G C T C T G A A G C T T G A C A T G C T A G C G C T A A C G T