Information for 18-CCTAGACACA (Motif 32)

A G T C A G T C A C G T C G T A A C T G C G T A A G T C C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T A C T G A C G T A G T C A C G T C G T A A C T G A C T G
p-value:1e-3
log p-value:-7.140e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif22.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets88.0 +/- 0.0bp
Average Position of motif in Background84.2 +/- 72.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4/MA1153.1/Jaspar

Match Rank:1
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:CCTAGACACA
TCTAGACA--
A G T C A G T C A C G T C G T A A C T G C G T A A G T C C G T A A G T C C G T A
A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CCTAGACACA
CGTCTAGACA--
A C G T A C G T A G T C A G T C A C G T C G T A A C T G C G T A A G T C C G T A A G T C C G T A
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T A C G T

SMAD5/MA1557.1/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CCTAGACACA
TGTCTAGACA--
A C G T A C G T A G T C A G T C A C G T C G T A A C T G C G T A A G T C C G T A A G T C C G T A
G A C T T C A G C A G T T G A C A C G T T G C A T A C G G T C A G A T C G C T A A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CCTAGACACA-
SCCTAGCAACAG
A C G T A G T C A G T C A C G T C G T A A C T G C G T A A G T C C G T A A G T C C G T A A C G T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CCTAGACACA
-CCAGACAG-
A G T C A G T C A C G T C G T A A C T G C G T A A G T C C G T A A G T C C G T A
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CCTAGACACA---
CAAATCCAGACATCACA
A C G T A C G T A C G T A C G T A G T C A G T C A C G T C G T A A C T G C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

PB0159.1_Rfx4_2/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CCTAGACACA--
TACCCTAGTTACCGA
A C G T A C G T A C G T A G T C A G T C A C G T C G T A A C T G C G T A A G T C C G T A A G T C C G T A A C G T A C G T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CCTAGACACA
-BCAGACWA-
A G T C A G T C A C G T C G T A A C T G C G T A A G T C C G T A A G T C C G T A
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CCTAGACACA-
-CCAGACRSVB
A G T C A G T C A C G T C G T A A C T G C G T A A G T C C G T A A G T C C G T A A C G T
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PRDM4/MA1647.1/Jaspar

Match Rank:10
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCTAGACACA---
--NAGAAACAGNN
A G T C A G T C A C G T C G T A A C T G C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T C G A T C G T A C A T G C G T A T C G A C G T A A G T C G C T A A T C G G T C A G A T C