Information for 2-CTHAMRCCAG (Motif 9)

A T G C C G A T G A C T C G T A G T C A T C G A G T A C A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A C T G A G C T A C G T A C G T C T G A C G T A A T C G
p-value:1e-11
log p-value:-2.577e+01
Information Content per bp:1.775
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.48%
Number of Background Sequences with motif337.8
Percentage of Background Sequences with motif0.71%
Average Position of motif in Targets91.0 +/- 52.5bp
Average Position of motif in Background96.4 +/- 64.1bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:CTHAMRCCAG---
---ATGCCAGACN
A T G C C G A T G A C T C G T A G T C A T C G A G T A C A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CTHAMRCCAG
CNGTCACGCCAC
A C G T A C G T A T G C C G A T G A C T C G T A G T C A T C G A G T A C A G T C C G T A A C T G
G T A C C T A G T C A G A G C T T A G C C G T A A T G C T A C G A G T C G T A C G T C A A G T C

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTHAMRCCAG
ATCACCCCAT
A T G C C G A T G A C T C G T A G T C A T C G A G T A C A G T C C G T A A C T G
T C G A G C A T A T G C C T G A A T G C T A G C A G T C G T A C T C G A A G C T

SREBF2/MA0596.1/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CTHAMRCCAG
ATCACCCCAT
A T G C C G A T G A C T C G T A G T C A T C G A G T A C A G T C C G T A A C T G
C T G A A C G T A G T C C G T A A T G C T A G C A G T C A T G C C G T A A G C T

SREBF1/MA0595.1/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CTHAMRCCAG
ATCACCCCAC
A T G C C G A T G A C T C G T A G T C A T C G A G T A C A G T C C G T A A C T G
T C G A A C G T A G T C C G T A A T G C T A G C A G T C T A G C C G T A A G T C

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CTHAMRCCAG--
TGACANARRCCAGRC
A C G T A C G T A C G T A T G C C G A T G A C T C G T A G T C A T C G A G T A C A G T C C G T A A C T G A C G T A C G T
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:CTHAMRCCAG-
-----CACAGN
A T G C C G A T G A C T C G T A G T C A T C G A G T A C A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

ZNF317/MA1593.1/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CTHAMRCCAG---
-TAACAGCAGACT
A T G C C G A T G A C T C G T A G T C A T C G A G T A C A G T C C G T A A C T G A C G T A C G T A C G T
A C G T C G A T T C G A C G T A T G A C C G T A C T A G G T A C C G T A C T A G G C T A G A T C G C A T

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CTHAMRCCAG--------
-CAAATCCAGACATCACA
A T G C C G A T G A C T C G T A G T C A T C G A G T A C A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CTHAMRCCAG-
-AAACCACAGC
A T G C C G A T G A C T C G T A G T C A T C G A G T A C A G T C C G T A A C T G A C G T
A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C