Information for 3-CACGHTGVDGGG (Motif 3)

G T A C C G T A A G T C C T A G G A C T C G A T A T C G T A C G C A G T A C T G A C T G A C T G
Reverse Opposite:
G T A C A G T C A G T C G C T A A G T C A T G C C G T A C A G T A G T C A C T G A C G T A C T G
p-value:1e-4
log p-value:-1.124e+01
Information Content per bp:1.720
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif462.3
Percentage of Background Sequences with motif0.54%
Average Position of motif in Targets134.2 +/- 29.9bp
Average Position of motif in Background94.6 +/- 71.8bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CACGHTGVDGGG--
GCACAYAGTAGGKCY
A C G T G T A C C G T A A G T C C T A G G A C T C G A T A T C G T A C G C A G T A C T G A C T G A C T G A C G T A C G T
C T A G G A T C T C G A A T G C T C G A A G C T C T G A A C T G A C G T C T G A A C T G A C T G A C G T A G T C G A T C

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CACGHTGVDGGG
GCACGTNC-----
A C G T G T A C C G T A A G T C C T A G G A C T C G A T A T C G T A C G C A G T A C T G A C T G A C T G
A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C A C G T A C G T A C G T A C G T A C G T

Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer

Match Rank:3
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CACGHTGVDGGG--
--CHCAGCRGGRGG
G T A C C G T A A G T C C T A G G A C T C G A T A T C G T A C G C A G T A C T G A C T G A C T G A C G T A C G T
A C G T A C G T T G A C G T C A A G T C G C T A C T A G A G T C C T G A C A T G A C T G C T A G T A C G T C A G

SOX18/MA1563.1/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CACGHTGVDGGG
CACAATGC----
G T A C C G T A A G T C C T A G G A C T C G A T A T C G T A C G C A G T A C T G A C T G A C T G
T A G C C T G A A G T C T C G A T G C A A G C T C T A G T A G C A C G T A C G T A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CACGHTGVDGGG
CACGCA------
G T A C C G T A A G T C C T A G G A C T C G A T A T C G T A C G C A G T A C T G A C T G A C T G
A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CACGHTGVDGGG----
-NCGCAGCGGGGGGTC
G T A C C G T A A G T C C T A G G A C T C G A T A T C G T A C G C A G T A C T G A C T G A C T G A C G T A C G T A C G T A C G T
A C G T C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CACGHTGVDGGG
GCACGTAY-----
A C G T G T A C C G T A A G T C C T A G G A C T C G A T A T C G T A C G C A G T A C T G A C T G A C T G
C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T A C G T A C G T A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CACGHTGVDGGG
GCACGTACCC---
A C G T G T A C C G T A A G T C C T A G G A C T C G A T A T C G T A C G C A G T A C T G A C T G A C T G
C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CACGHTGVDGGG----
-DCHCAGCAGGRGGCC
G T A C C G T A A G T C C T A G G A C T C G A T A T C G T A C G C A G T A C T G A C T G A C T G A C G T A C G T A C G T A C G T
A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

ZIC5/MA1584.1/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CACGHTGVDGGG---
GCNCAGCGGGGGGTCN
A C G T G T A C C G T A A G T C C T A G G A C T C G A T A T C G T A C G C A G T A C T G A C T G A C T G A C G T A C G T A C G T
C A T G T G A C C T G A A G T C T C G A T C A G G A T C C T A G A C T G C A T G A C T G A C T G C A T G A G C T T G A C A C T G