Information for 25-CAATTCAAGT (Motif 33)

A G T C C G T A C G T A A C G T A C G T A G T C C G T A C G T A A C T G A C G T
Reverse Opposite:
C G T A A G T C A C G T A C G T A C T G C G T A C G T A A C G T A C G T A C T G
p-value:1e-2
log p-value:-6.894e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif113.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets57.0 +/- 0.0bp
Average Position of motif in Background103.8 +/- 155.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0068.1_Sox1_1/Jaspar

Match Rank:1
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---CAATTCAAGT---
AATCAATTCAATAATT
A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C G T A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

PH0114.1_Nkx2-5/Jaspar

Match Rank:2
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CAATTCAAGT------
AAATTCAAGTGGNTTN
A G T C C G T A C G T A A C G T A C G T A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A

NKX2-8/MA0673.1/Jaspar

Match Rank:3
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:CAATTCAAGT--
---NTCAAGTGG
A G T C C G T A C G T A A C G T A C G T A G T C C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G

PH0171.1_Nkx2-1/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CAATTCAAGT------
AANTTCAAGTGGCTTN
A G T C C G T A C G T A A C G T A C G T A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A

PH0111.1_Nkx2-2/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CAATTCAAGT------
NANTTTCAAGTGGTTAN
A C G T A G T C C G T A C G T A A C G T A C G T A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T

PB0066.1_Sox17_1/Jaspar

Match Rank:6
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CAATTCAAGT
ATAAACAATTAAACA
A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C G T A G T C C G T A C G T A A C T G A C G T
T G C A C G A T C T G A C G T A C G T A A G T C C G T A C G T A C G A T C G A T T C G A G C T A G C A T G A T C C G T A

LIN54/MA0619.1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CAATTCAAGT
-NATTCAAAT
A G T C C G T A C G T A A C G T A C G T A G T C C G T A C G T A A C T G A C G T
A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

NKX2-3/MA0672.1/Jaspar

Match Rank:8
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CAATTCAAGT---
---NTCAAGTGGN
A G T C C G T A C G T A A C G T A C G T A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CAATTCAAGT------
AATTTCAAGTGGCTTN
A G T C C G T A C G T A A C G T A C G T A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A

PB0178.1_Sox8_2/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CAATTCAAGT----
ACATTCATGACACG
A G T C C G T A C G T A A C G T A C G T A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G