Information for 4-CWTGKWWRMMAC (Motif 4)

A T G C G C A T A C G T A C T G A C T G G C T A C G T A C T A G G T C A G T A C C G T A A G T C
Reverse Opposite:
A C T G A C G T A C T G A C G T A G T C C G A T C G A T G T A C G T A C C G T A C G A T A T C G
p-value:1e-5
log p-value:-1.290e+01
Information Content per bp:1.762
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif37.50%
Number of Background Sequences with motif366.1
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets108.0 +/- 33.4bp
Average Position of motif in Background102.0 +/- 80.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0158.1_Rfx3_2/Jaspar

Match Rank:1
Score:0.64
Offset:-7
Orientation:forward strand
Alignment:-------CWTGKWWRMMAC----
ACTGACCCTTGGTTACCACAAAG
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G C A T A C G T A C T G A C T G G C T A C G T A C T A G G T C A G T A C C G T A A G T C A C G T A C G T A C G T A C G T
T G C A A G T C A C G T A T C G G C T A A T G C T A C G A T G C G C A T C G A T T C A G A C T G C G A T C A G T C G T A G A T C T G A C T C G A T G A C T C G A T C G A C G T A A T C G

PH0085.1_Irx4/Jaspar

Match Rank:2
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------CWTGKWWRMMAC
AATATACATGTAAAACA-
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G C A T A C G T A C T G A C T G G C T A C G T A C T A G G T C A G T A C C G T A A G T C
C G T A C G T A G C A T C T G A C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G T C A C G T A C G T A A G T C C G T A A C G T

PH0086.1_Irx5/Jaspar

Match Rank:3
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------CWTGKWWRMMAC
AATATACATGTAAAATT-
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G C A T A C G T A C T G A C T G G C T A C G T A C T A G G T C A G T A C C G T A A G T C
C G A T C G T A C G A T G C T A C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A G T C A C G T A C G T A A C G T C G A T A C G T

PH0083.1_Irx3_1/Jaspar

Match Rank:4
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------CWTGKWWRMMAC
AAAATACATGTAATACT-
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G C A T A C G T A C T G A C T G G C T A C G T A C T A G G T C A G T A C C G T A A G T C
C G T A C T G A C G A T C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A T G C A C G A T C G T A G A T C C G A T A C G T

PH0082.1_Irx2/Jaspar

Match Rank:5
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------CWTGKWWRMMAC
TAAATACATGTAAAATT-
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G C A T A C G T A C T G A C T G G C T A C G T A C T A G G T C A G T A C C G T A A G T C
C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T A C G T

PH0084.1_Irx3_2/Jaspar

Match Rank:6
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------CWTGKWWRMMAC
AATATACATGTAATATA-
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G C A T A C G T A C T G A C T G G C T A C G T A C T A G G T C A G T A C C G T A A G T C
C G T A C G T A C G A T C G T A C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A T C G A C G A T C G T A G A C T C G A T A C G T

FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CWTGKWWRMMAC
SCHTGTTTACAT-
A C G T A T G C G C A T A C G T A C T G A C T G G C T A C G T A C T A G G T C A G T A C C G T A A G T C
T A C G T A G C G C T A C G A T C T A G A C G T C A G T C A G T G C T A A G T C G T C A G C A T A C G T

PB0159.1_Rfx4_2/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CWTGKWWRMMAC
TACCCTAGTTACCGA
A C G T A C G T A C G T A T G C G C A T A C G T A C T G A C T G G C T A C G T A C T A G G T C A G T A C C G T A A G T C
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

FOXK1/MA0852.2/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CWTGKWWRMMAC
NNCTTGTTTACNNN
A C G T A C G T A T G C G C A T A C G T A C T G A C T G G C T A C G T A C T A G G T C A G T A C C G T A A G T C
A C T G A T G C A T G C A G C T C A G T T C A G C A G T A C G T A C G T G C T A A G T C G T C A G A C T G C A T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CWTGKWWRMMAC--
--TGTCTGDCACCT
A T G C G C A T A C G T A C T G A C T G G C T A C G T A C T A G G T C A G T A C C G T A A G T C A C G T A C G T
A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T