Information for 2-GVAATVCCCCAT (Motif 2)

A C T G T A G C C G T A C T G A C G A T T C G A A G T C A G T C A G T C A G T C G T C A A G C T
Reverse Opposite:
C T G A A C G T A C T G C T A G A C T G A C T G A C G T C G T A A G C T A C G T A C T G G T A C
p-value:1e-5
log p-value:-1.371e+01
Information Content per bp:1.741
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif40.00%
Number of Background Sequences with motif790.7
Percentage of Background Sequences with motif0.86%
Average Position of motif in Targets91.8 +/- 35.5bp
Average Position of motif in Background97.6 +/- 80.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-GVAATVCCCCAT
GGGAAATCCCCN-
A C G T A C T G T A G C C G T A C T G A C G A T T C G A A G T C A G T C A G T C A G T C G T C A A G C T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GVAATVCCCCAT
GGAAATCCCC--
A C T G T A G C C G T A C T G A C G A T T C G A A G T C A G T C A G T C A G T C G T C A A G C T
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T

Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer

Match Rank:3
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:GVAATVCCCCAT-
---KGGCCYCWTD
A C T G T A G C C G T A C T G A C G A T T C G A A G T C A G T C A G T C A G T C G T C A A G C T A C G T
A C G T A C G T A C G T C A T G C A T G T A C G G T A C A T G C G A T C A T G C G C T A A G C T C T G A

REL/MA0101.1/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GVAATVCCCCAT
GGAAANCCCC--
A C T G T A G C C G T A C T G A C G A T T C G A A G T C A G T C A G T C A G T C G T C A A G C T
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T

PB0201.1_Zfp281_2/Jaspar

Match Rank:5
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GVAATVCCCCAT----
AGGAGACCCCCAATTTG
A C G T A C T G T A G C C G T A C T G A C G A T T C G A A G T C A G T C A G T C A G T C G T C A A G C T A C G T A C G T A C G T A C G T
C G T A C A T G C A T G C G T A C A T G C T G A T G A C G T A C T A G C A G T C G T A C G C T A G C T A C G A T C G A T C G A T T C A G

RELB/MA1117.1/Jaspar

Match Rank:6
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GVAATVCCCCAT
-GAATTCCCCGG
A C T G T A G C C G T A C T G A C G A T T C G A A G T C A G T C A G T C A G T C G T C A A G C T
A C G T C T A G C T G A C G T A C G A T G A C T G A T C G T A C G T A C T A G C C A T G T A C G

MZF1/MA0056.2/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GVAATVCCCCAT--
-CAAATCCCCACTT
A C T G T A G C C G T A C T G A C G A T T C G A A G T C A G T C A G T C A G T C G T C A A G C T A C G T A C G T
A C G T G T A C G C T A T G C A T G C A C G A T T A G C G T A C G A T C G A T C G C T A G A T C G C A T A G C T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GVAATVCCCCAT
GGGGGAATCCCC---
A C G T A C G T A C G T A C T G T A G C C G T A C T G A C G A T T C G A A G T C A G T C A G T C A G T C G T C A A G C T
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C A C G T A C G T A C G T

PB0092.1_Zbtb7b_1/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GVAATVCCCCAT-----
--AAGCCCCCCAAAAAT
A C T G T A G C C G T A C T G A C G A T T C G A A G T C A G T C A G T C A G T C G T C A A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C T G A T C A G T A G C T A G C G T A C G T A C A G T C G A T C G C T A G C T A G C T A C G T A G T C A A G C T

RELA/MA0107.1/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GVAATVCCCCAT
GGAAATTCCC--
A C T G T A G C C G T A C T G A C G A T T C G A A G T C A G T C A G T C A G T C G T C A A G C T
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T