Information for 3-ATAGGWCS (Motif 25)

T C G A A G C T T G C A A T C G A T C G C G A T A G T C A T C G
Reverse Opposite:
T A G C C T A G C G T A A T G C A T G C A C G T C T G A A G C T
p-value:1e-6
log p-value:-1.519e+01
Information Content per bp:1.724
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.48%
Number of Background Sequences with motif130.1
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets122.7 +/- 47.7bp
Average Position of motif in Background103.3 +/- 60.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORC/MA1151.1/Jaspar

Match Rank:1
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----ATAGGWCS
ATAAGTAGGTCA
A C G T A C G T A C G T A C G T T C G A A G C T T G C A A T C G A T C G C G A T A G T C A T C G
C T G A C G A T G C T A C G T A A C T G A C G T T C G A C A T G C T A G A C G T A G T C C T G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.60
Offset:2
Orientation:forward strand
Alignment:ATAGGWCS
--AGGTCA
T C G A A G C T T G C A A T C G A T C G C G A T A G T C A T C G
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A

RORA(var.2)/MA0072.1/Jaspar

Match Rank:3
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----ATAGGWCS-
TATAAGTAGGTCAA
A C G T A C G T A C G T A C G T A C G T T C G A A G C T T G C A A T C G A T C G C G A T A G T C A T C G A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--ATAGGWCS
NTATYGATCH
A C G T A C G T T C G A A G C T T G C A A T C G A T C G C G A T A G T C A T C G
C T A G C A G T C G T A A C G T A G T C A C T G C G T A A G C T A G T C G A T C

PB0049.1_Nr2f2_1/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----ATAGGWCS----
TCTCAAAGGTCACGAG
A C G T A C G T A C G T A C G T T C G A A G C T T G C A A T C G A T C G C G A T A G T C A T C G A C G T A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--ATAGGWCS
AAYTAGGTCA
A C G T A C G T T C G A A G C T T G C A A T C G A T C G C G A T A G T C A T C G
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--ATAGGWCS
AAYTAGGTCA
A C G T A C G T T C G A A G C T T G C A A T C G A T C G C G A T A G T C A T C G
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

NFY(CCAAT)/Promoter/Homer

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---ATAGGWCS
CCGATTGGCT-
A C G T A C G T A C G T T C G A A G C T T G C A A T C G A T C G C G A T A G T C A T C G
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---ATAGGWCS----
AAWCTAGGTCARDNN
A C G T A C G T A C G T T C G A A G C T T G C A A T C G A T C G C G A T A G T C A T C G A C G T A C G T A C G T A C G T
C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A

NFYB/MA0502.2/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---ATAGGWCS-
CTCATTGGCCAG
A C G T A C G T A C G T T C G A A G C T T G C A A T C G A T C G C G A T A G T C A T C G A C G T
A T G C A G C T A T G C G C T A A G C T C A G T C A T G C T A G A G T C G A T C T G C A T C A G