Information for 3-ATAGATTAAT (Motif 10)

C G T A G A C T C G T A T C A G C T G A G A C T C A G T T G C A C T G A A C G T
Reverse Opposite:
T G C A G A C T A C G T G T C A C T G A G A C T A G T C G C A T C T G A G C A T
p-value:1e-8
log p-value:-1.862e+01
Information Content per bp:1.655
Number of Target Sequences with motif53.0
Percentage of Target Sequences with motif6.66%
Number of Background Sequences with motif1318.7
Percentage of Background Sequences with motif2.76%
Average Position of motif in Targets112.9 +/- 55.8bp
Average Position of motif in Background98.4 +/- 60.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3b/MA0601.1/Jaspar

Match Rank:1
Score:0.73
Offset:2
Orientation:forward strand
Alignment:ATAGATTAAT---
--ATATTAATTAA
C G T A G A C T C G T A T C A G C T G A G A C T C A G T T G C A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

PH0138.1_Pitx2/Jaspar

Match Rank:2
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---ATAGATTAAT----
TGAAGGGATTAATCATC
A C G T A C G T A C G T C G T A G A C T C G T A T C A G C T G A G A C T C A G T T G C A C T G A A C G T A C G T A C G T A C G T A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

GATA1/MA0035.4/Jaspar

Match Rank:3
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:ATAGATTAAT-
NNAGATTAGAN
C G T A G A C T C G T A T C A G C T G A G A C T C A G T T G C A C T G A A C G T A C G T
C G T A G C A T C G T A C A T G C G T A C G A T G C A T G C T A C A T G C G T A G C T A

PH0130.1_Otx2/Jaspar

Match Rank:4
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---ATAGATTAAT----
TGTAGGGATTAATTGTC
A C G T A C G T A C G T C G T A G A C T C G T A T C A G C T G A G A C T C A G T T G C A C T G A A C G T A C G T A C G T A C G T A C G T
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

CUX1/MA0754.1/Jaspar

Match Rank:5
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--ATAGATTAAT
NTATCGATTA--
A C G T A C G T C G T A G A C T C G T A T C A G C T G A G A C T C A G T T G C A C T G A A C G T
C A G T A C G T C G T A G C A T A G T C T C A G T C G A G A C T G A C T C T G A A C G T A C G T

PH0172.1_Tlx2/Jaspar

Match Rank:6
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--ATAGATTAAT-----
TAATTAATTAATAACTA
A C G T A C G T C G T A G A C T C G T A T C A G C T G A G A C T C A G T T G C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C T A C T G A C G A T G A C T C G T A C G T A G A C T G A C T C T G A C G T A G C A T C G T A C T G A G A T C C G A T C G A T

CUX2/MA0755.1/Jaspar

Match Rank:7
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--ATAGATTAAT
TTATCGATTA--
A C G T A C G T C G T A G A C T C G T A T C A G C T G A G A C T C A G T T G C A C T G A A C G T
C G A T C G A T C G T A G C A T G A T C T C A G T C G A G A C T G A C T C G T A A C G T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:8
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:ATAGATTAAT--
--TGATTGATGA
C G T A G A C T C G T A T C A G C T G A G A C T C A G T T G C A C T G A A C G T A C G T A C G T
A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

PH0129.1_Otx1/Jaspar

Match Rank:9
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---ATAGATTAAT----
AGAGGGGATTAATTTAT
A C G T A C G T A C G T C G T A G A C T C G T A T C A G C T G A G A C T C A G T T G C A C T G A A C G T A C G T A C G T A C G T A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:10
Score:0.70
Offset:1
Orientation:forward strand
Alignment:ATAGATTAAT
-RGGATTAR-
C G T A G A C T C G T A T C A G C T G A G A C T C A G T T G C A C T G A A C G T
A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T