Information for 1-AATTGGGT (Motif 17)

C T G A C G T A C G A T A G C T A C T G C T A G A T C G A G C T
Reverse Opposite:
C T G A A T G C A G T C A G T C C T G A C G T A A C G T A G C T
p-value:1e-6
log p-value:-1.565e+01
Information Content per bp:1.828
Number of Target Sequences with motif53.0
Percentage of Target Sequences with motif5.68%
Number of Background Sequences with motif1257.1
Percentage of Background Sequences with motif2.58%
Average Position of motif in Targets97.8 +/- 57.1bp
Average Position of motif in Background101.4 +/- 55.7bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LHX2/MA0700.2/Jaspar

Match Rank:1
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---AATTGGGT
NNTAATTGGNN
A C G T A C G T A C G T C T G A C G T A C G A T A G C T A C T G C T A G A T C G A G C T
C G T A G C A T C G A T C G T A G C T A C G A T C G A T C T A G T A C G G C A T G C A T

MSX2/MA0708.1/Jaspar

Match Rank:2
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--AATTGGGT
NTAATTGG--
A C G T A C G T C T G A C G T A C G A T A G C T A C T G C T A G A T C G A G C T
A G C T C A G T T C G A C G T A A C G T C A G T C T A G A T C G A C G T A C G T

MSX1/MA0666.1/Jaspar

Match Rank:3
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--AATTGGGT
NTAATTGG--
A C G T A C G T C T G A C G T A C G A T A G C T A C T G C T A G A T C G A G C T
A G T C A C G T T G C A G T C A A C G T A C G T C T A G T A C G A C G T A C G T

Msx3/MA0709.1/Jaspar

Match Rank:4
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--AATTGGGT
NTAATTGN--
A C G T A C G T C T G A C G T A C G A T A G C T A C T G C T A G A T C G A G C T
A G C T G C A T C T G A C G T A A C G T A G C T C T A G A T C G A C G T A C G T

EN2/MA0642.1/Jaspar

Match Rank:5
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---AATTGGGT
GNTAATTGGN-
A C G T A C G T A C G T C T G A C G T A C G A T A G C T A C T G C T A G A T C G A G C T
T A C G A T G C A G C T T C G A C G T A A C G T A C G T T C A G T A C G A T C G A C G T

PH0005.1_Barhl1/Jaspar

Match Rank:6
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----AATTGGGT---
GNNTTAATTGGTTGTT
A C G T A C G T A C G T A C G T A C G T C T G A C G T A C G A T A G C T A C T G C T A G A T C G A G C T A C G T A C G T A C G T
C A T G G C T A T G C A G A C T C G A T C G T A C G T A C G A T A G C T C T A G T A C G G A C T A G C T C A T G G A C T C A G T

RAX2/MA0717.1/Jaspar

Match Rank:7
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--AATTGGGT
NTAATTGG--
A C G T A C G T C T G A C G T A C G A T A G C T A C T G C T A G A T C G A G C T
A G C T C G A T T C G A C T G A C A G T A G C T C T A G T C A G A C G T A C G T

LBX2/MA0699.1/Jaspar

Match Rank:8
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---AATTGGGT
NNTAATTGGN-
A C G T A C G T A C G T C T G A C G T A C G A T A G C T A C T G C T A G A T C G A G C T
A T C G G A T C G C A T T G C A T G C A A C G T A C G T C T A G T C A G A G T C A C G T

PH0089.1_Isx/Jaspar

Match Rank:9
Score:0.70
Offset:-6
Orientation:forward strand
Alignment:------AATTGGGT--
ACTCCTAATTAGTCGT
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G T A C G A T A G C T A C T G C T A G A T C G A G C T A C G T A C G T
G C T A T G A C A G C T T G A C G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C G T A G T C T A C G C G A T

NFY(CCAAT)/Promoter/Homer

Match Rank:10
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--AATTGGGT
CCGATTGGCT
A C G T A C G T C T G A C G T A C G A T A G C T A C T G C T A G A T C G A G C T
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T