Information for 7-ATGTYTGKTCTC (Motif 12)

C G T A A C G T C T A G A G C T A G C T A C G T A T C G A C T G A C G T G T A C A C G T A G T C
Reverse Opposite:
A C T G C G T A A C T G G T C A G T A C A T G C C G T A T C G A C T G A A G T C C G T A A C G T
p-value:1e-9
log p-value:-2.288e+01
Information Content per bp:1.829
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets118.3 +/- 31.0bp
Average Position of motif in Background137.7 +/- 43.9bp
Strand Bias (log2 ratio + to - strand density)1.9
Multiplicity (# of sites on avg that occur together)1.75
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----ATGTYTGKTCTC-
NNTNNTGTCTGGNNTNG
A C G T A C G T A C G T A C G T C G T A A C G T C T A G A G C T A G C T A C G T A T C G A C T G A C G T G T A C A C G T A G T C A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

ZNF274/MA1592.1/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-ATGTYTGKTCTC---
GGTATGAGTTCTCGCT
A C G T C G T A A C G T C T A G A G C T A G C T A C G T A T C G A C T G A C G T G T A C A C G T A G T C A C G T A C G T A C G T
C T A G T C A G A G C T C T G A A C G T T C A G C T G A T A C G C A G T G A C T G T A C A C G T G A T C C T A G A G T C C A G T

Foxd3/MA0041.1/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--ATGTYTGKTCTC
GAATGTTTGTTT--
A C G T A C G T C G T A A C G T C T A G A G C T A G C T A C G T A T C G A C T G A C G T G T A C A C G T A G T C
C T A G G C T A G C T A G A C T C T A G A C G T C G A T C A G T C T A G G A C T A C G T A G C T A C G T A C G T

Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer

Match Rank:4
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-ATGTYTGKTCTC
YSTGGGTGGTCT-
A C G T C G T A A C G T C T A G A G C T A G C T A C G T A T C G A C T G A C G T G T A C A C G T A G T C
A G T C A T C G G C A T C A T G A C T G A T C G C G A T C T A G A C T G A G C T T G A C G A C T A C G T

PB0172.1_Sox1_2/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--ATGTYTGKTCTC-
CTATAATTGTTAGCG
A C G T A C G T C G T A A C G T C T A G A G C T A G C T A C G T A T C G A C T G A C G T G T A C A C G T A G T C A C G T
G T A C A G C T C T G A G A C T G C T A C T G A G A C T A G C T T A C G A C G T A C G T T G C A A C G T A G T C T A C G

PB0036.1_Irf6_1/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:ATGTYTGKTCTC------
-NNNTTGGTTTCGNTNNN
C G T A A C G T C T A G A G C T A G C T A C G T A T C G A C T G A C G T G T A C A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C T A G T A C G C A T A C G T A G C T C T A G A C T G A C G T G C A T A C G T A G T C C T A G C T G A G A C T G A T C G C T A C A T G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--ATGTYTGKTCTC
VBSYGTCTGG----
A C G T A C G T C G T A A C G T C T A G A G C T A G C T A C G T A T C G A C T G A C G T G T A C A C G T A G T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.53
Offset:0
Orientation:forward strand
Alignment:ATGTYTGKTCTC
CTGTCTGG----
C G T A A C G T C T A G A G C T A G C T A C G T A T C G A C T G A C G T G T A C A C G T A G T C
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:ATGTYTGKTCTC---
-----TGGTTTCAGT
C G T A A C G T C T A G A G C T A G C T A C G T A T C G A C T G A C G T G T A C A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T

PB0062.1_Sox12_1/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:forward strand
Alignment:ATGTYTGKTCTC---
-TAATTGTTCTAAAC
C G T A A C G T C T A G A G C T A G C T A C G T A T C G A C T G A C G T G T A C A C G T A G T C A C G T A C G T A C G T
A C G T G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C