Information for 3-BHCATGGBCTAA (Motif 3)

A C G T G C T A A T G C C G T A A G C T A T C G A C T G A C G T G T A C A C G T C G T A C T G A
Reverse Opposite:
A G C T A C G T G T C A A C T G T C G A A G T C A T G C T C G A A C G T T A C G C A G T T C G A
p-value:1e-5
log p-value:-1.301e+01
Information Content per bp:1.684
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif42.86%
Number of Background Sequences with motif439.5
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets116.3 +/- 62.1bp
Average Position of motif in Background108.4 +/- 88.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:1
Score:0.54
Offset:0
Orientation:forward strand
Alignment:BHCATGGBCTAA
NTCAAGGTCA--
A C G T G C T A A T G C C G T A A G C T A T C G A C T G A C G T G T A C A C G T C G T A C T G A
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T

NFYB/MA0502.2/Jaspar

Match Rank:2
Score:0.53
Offset:0
Orientation:forward strand
Alignment:BHCATGGBCTAA
CTCATTGGCCAG
A C G T G C T A A T G C C G T A A G C T A T C G A C T G A C G T G T A C A C G T C G T A C T G A
A T G C A G C T A T G C G C T A A G C T C A G T C A T G C T A G A G T C G A T C T G C A T C A G

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-BHCATGGBCTAA
GTTAATGGCC---
A C G T A C G T G C T A A T G C C G T A A G C T A T C G A C T G A C G T G T A C A C G T C G T A C T G A
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T A C G T

NR5A1/MA1540.1/Jaspar

Match Rank:4
Score:0.52
Offset:0
Orientation:forward strand
Alignment:BHCATGGBCTAA
GTCAAGGTCAC-
A C G T G C T A A T G C C G T A A G C T A T C G A C T G A C G T G T A C A C G T C G T A C T G A
A C T G G A C T A T G C C T G A C G T A A C T G A C T G G A C T A G T C C T G A G A T C A C G T

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-BHCATGGBCTAA
TTTNATTGCY---
A C G T A C G T G C T A A T G C C G T A A G C T A T C G A C T G A C G T G T A C A C G T C G T A C T G A
A C G T A C G T C G A T A C G T G T C A A C G T C A G T C T A G A T G C G A T C A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:6
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:BHCATGGBCTAA-
-TGATTGGCTANN
A C G T G C T A A T G C C G T A A G C T A T C G A C T G A C G T G T A C A C G T C G T A C T G A A C G T
A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

PB0096.1_Zfp187_1/Jaspar

Match Rank:7
Score:0.51
Offset:1
Orientation:forward strand
Alignment:BHCATGGBCTAA---
-TTATGTACTAATAA
A C G T G C T A A T G C C G T A A G C T A T C G A C T G A C G T G T A C A C G T C G T A C T G A A C G T A C G T A C G T
A C G T A G C T G A C T T C G A G A C T C T A G C G A T C T G A A G T C A G C T G C T A C G T A C G A T C G T A G T C A

NFIL3/MA0025.2/Jaspar

Match Rank:8
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:BHCATGGBCTAA--
-NNATTGCATAANN
A C G T G C T A A T G C C G T A A G C T A T C G A C T G A C G T G T A C A C G T C G T A C T G A A C G T A C G T
A C G T C G T A C A G T T C G A G C A T C A G T C T A G G A T C C T G A G A C T G T C A C G T A A G C T G C T A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:9
Score:0.51
Offset:0
Orientation:forward strand
Alignment:BHCATGGBCTAA
BTCAAGGTCA--
A C G T G C T A A T G C C G T A A G C T A T C G A C T G A C G T G T A C A C G T C G T A C T G A
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:10
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:BHCATGGBCTAA
CCGATTGGCT--
A C G T G C T A A T G C C G T A A G C T A T C G A C T G A C G T G T A C A C G T C G T A C T G A
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T A C G T