Information for 3-CAGTCCTATAAA (Motif 3)

A G T C C G T A A C T G C G A T T A G C A G T C A C G T G T C A A G C T C T G A C G T A C G T A
Reverse Opposite:
A C G T A C G T A G C T C T G A A C G T G T C A C T A G A T C G C G T A A G T C A C G T A C T G
p-value:1e-7
log p-value:-1.674e+01
Information Content per bp:1.821
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif37.50%
Number of Background Sequences with motif96.6
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets70.7 +/- 24.9bp
Average Position of motif in Background113.7 +/- 69.3bp
Strand Bias (log2 ratio + to - strand density)-10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:1
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CAGTCCTATAAA--
----CYHATAAAAN
A G T C C G T A A C T G C G A T T A G C A G T C A C G T G T C A A G C T C T G A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C

POL002.1_INR/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CAGTCCTATAAA
TCAGTCTT-----
A C G T A G T C C G T A A C T G C G A T T A G C A G T C A C G T G T C A A G C T C T G A C G T A C G T A
C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T A C G T A C G T A C G T A C G T A C G T

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CAGTCCTATAAA-
---NCYAATAAAA
A G T C C G T A A C T G C G A T T A G C A G T C A C G T G T C A A G C T C T G A C G T A C G T A A C G T
A C G T A C G T A C G T C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

PB0099.1_Zfp691_1/Jaspar

Match Rank:4
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CAGTCCTATAAA-
CGAACAGTGCTCACTAT
A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G A T T A G C A G T C A C G T G T C A A G C T C T G A C G T A C G T A A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CAGTCCTATAAA-
---KGCCATAAAA
A G T C C G T A A C T G C G A T T A G C A G T C A C G T G T C A A G C T C T G A C G T A C G T A A C G T
A C G T A C G T A C G T C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CAGTCCTATAAA-
---VGCCATAAAA
A G T C C G T A A C T G C G A T T A G C A G T C A C G T G T C A A G C T C T G A C G T A C G T A A C G T
A C G T A C G T A C G T T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:7
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CAGTCCTATAAA-
---CCYMATAAAA
A G T C C G T A A C T G C G A T T A G C A G T C A C G T G T C A A G C T C T G A C G T A C G T A A C G T
A C G T A C G T A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

PH0075.1_Hoxd10/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CAGTCCTATAAA------
-AATGCAATAAAATTTAT
A G T C C G T A A C T G C G A T T A G C A G T C A C G T G T C A A G C T C T G A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CAGTCCTATAAA---
---NGYCATAAAWCH
A G T C C G T A A C T G C G A T T A G C A G T C A C G T G T C A A G C T C T G A C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

PH0057.1_Hoxb13/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CAGTCCTATAAA-----
-AACCCAATAAAATTCG
A G T C C G T A A C T G C G A T T A G C A G T C A C G T G T C A A G C T C T G A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G