Information for 2-GYAATGTTGTTA (Motif 2)

A C T G A G T C C G T A C T G A A C G T A C T G A C G T A C G T C T A G C A G T G A C T C G T A
Reverse Opposite:
C G A T C G T A G C T A A G T C C G T A G T C A G T A C G T C A A G C T A C G T T C A G A G T C
p-value:1e-6
log p-value:-1.537e+01
Information Content per bp:1.671
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif63.64%
Number of Background Sequences with motif4377.6
Percentage of Background Sequences with motif4.98%
Average Position of motif in Targets89.7 +/- 42.0bp
Average Position of motif in Background100.5 +/- 77.4bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0122.1_Foxk1_2/Jaspar

Match Rank:1
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GYAATGTTGTTA----
-NNNTGTTGTTGTTNG
A C T G A G T C C G T A C T G A A C G T A C T G A C G T A C G T C T A G C A G T G A C T C G T A A C G T A C G T A C G T A C G T
A C G T C T G A C A T G C T A G G C A T C T A G G C A T A C G T C T A G A G C T A C G T C T A G G A C T C A G T C G A T C A T G

PB0120.1_Foxj1_2/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GYAATGTTGTTA---
GTNTTGTTGTGANNT
A C T G A G T C C G T A C T G A A C G T A C T G A C G T A C G T C T A G C A G T G A C T C G T A A C G T A C G T A C G T
C A T G A G C T T A C G G A C T G C A T A C T G A C G T G A C T C T A G A G C T A C T G T G C A A G T C T C G A C G A T

PB0062.1_Sox12_1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GYAATGTTGTTA--
TAATTGTTCTAAAC
A C T G A G T C C G T A C T G A A C G T A C T G A C G T A C G T C T A G C A G T G A C T C G T A A C G T A C G T
G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C

Arid5a/MA0602.1/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GYAATGTTGTTA--
CTAATATTGCTAAA
A C T G A G T C C G T A C T G A A C G T A C T G A C G T A C G T C T A G C A G T G A C T C G T A A C G T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GYAATGTTGTTA--
CTAATATTGCTAAA
A C T G A G T C C G T A C T G A A C G T A C T G A C G T A C G T C T A G C A G T G A C T C G T A A C G T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PH0164.1_Six4/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GYAATGTTGTTA-----
TNNNNGGTGTCATNTNT
A C T G A G T C C G T A C T G A A C G T A C T G A C G T A C G T C T A G C A G T G A C T C G T A A C G T A C G T A C G T A C G T A C G T
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T

PB0067.1_Sox18_1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GYAATGTTGTTA--
TTCAATTGTTCTAAAA
A C G T A C G T A C T G A G T C C G T A C T G A A C G T A C T G A C G T A C G T C T A G C A G T G A C T C G T A A C G T A C G T
A G C T G C A T A G T C G T C A C G T A C G A T C G A T T C A G C G A T G C A T A G T C G C A T G T C A C G T A G T C A G C T A

TBX6/MA1567.1/Jaspar

Match Rank:8
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GYAATGTTGTTA-
---GAGGTGTGAA
A C T G A G T C C G T A C T G A A C G T A C T G A C G T A C G T C T A G C A G T G A C T C G T A A C G T
A C G T A C G T A C G T C T A G C T G A T A C G T A C G G A C T C T A G G A C T A C T G C T G A C G T A

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GYAATGTTGTTA-
---AAGGTGTKAA
A C T G A G T C C G T A C T G A A C G T A C T G A C G T A C G T C T A G C A G T G A C T C G T A A C G T
A C G T A C G T A C G T C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A

Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer

Match Rank:10
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GYAATGTTGTTA-
---DAGGTGTBAA
A C T G A G T C C G T A C T G A A C G T A C T G A C G T A C G T C T A G C A G T G A C T C G T A A C G T
A C G T A C G T A C G T C T A G C T G A T C A G A T C G A G C T C A T G G A C T A G T C C T G A T G C A