Information for 7-ATGGATGAATTT (Motif 9)

C G T A A C G T A C T G A C T G C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T
Reverse Opposite:
C G T A C G T A C G T A A C G T A C G T A G T C C G T A A C G T A G T C A G T C C G T A A C G T
p-value:1e-4
log p-value:-9.565e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0028.1_Hbp1_1/Jaspar

Match Rank:1
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---ATGGATGAATTT-
ACTATGAATGAATGAT
A C G T A C G T A C G T C G T A A C G T A C T G A C T G C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

ZNF24/MA1124.1/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--ATGGATGAATTT
GAATGAATGAATG-
A C G T A C G T C G T A A C G T A C T G A C T G C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T
C T A G T C G A C T G A A G C T C T A G C T G A T C G A A G C T C T A G T C G A C T G A A G C T C T A G A C G T

PH0125.1_Obox5_2/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---ATGGATGAATTT--
NANAGGGATTAATTATN
A C G T A C G T A C G T C G T A A C G T A C T G A C T G C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C

PH0129.1_Otx1/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---ATGGATGAATTT--
AGAGGGGATTAATTTAT
A C G T A C G T A C G T C G T A A C G T A C T G A C T G C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

PB0170.1_Sox17_2/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-ATGGATGAATTT----
NTTNTATGAATGTGNNC
A C G T C G T A A C G T A C T G A C T G C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

PH0124.1_Obox5_1/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---ATGGATGAATTT--
TAGAGGGATTAAATTTC
A C G T A C G T A C G T C G T A A C G T A C T G A C T G C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T
G C A T C T G A T C A G T C G A T C A G C T A G C A T G C G T A A C G T C G A T C G T A C G T A G C T A G A C T A G C T G C A T G T A C

PH0130.1_Otx2/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---ATGGATGAATTT--
TGTAGGGATTAATTGTC
A C G T A C G T A C G T C G T A A C G T A C T G A C T G C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

PB0171.1_Sox18_2/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:ATGGATGAATTT-----
-NNNNTGAATTCANNNC
C G T A A C G T A C T G A C T G C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C

PH0138.1_Pitx2/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---ATGGATGAATTT--
TGAAGGGATTAATCATC
A C G T A C G T A C G T C G T A A C G T A C T G A C T G C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--ATGGATGAATTT
TGATKGATGR----
A C G T A C G T C G T A A C G T A C T G A C T G C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T
C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G A C G T A C G T A C G T A C G T