Information for 2-GTCATAGA (Motif 7)

A C T G A C G T A G T C C G T A A C G T C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T C G T A A C G T A C T G C G T A A G T C
p-value:1e-5
log p-value:-1.227e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif37.50%
Number of Background Sequences with motif308.7
Percentage of Background Sequences with motif0.44%
Average Position of motif in Targets106.0 +/- 62.2bp
Average Position of motif in Background103.9 +/- 66.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0065.1_Hoxc10/Jaspar

Match Rank:1
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----GTCATAGA----
TAAAGTCGTAAAACGT
A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C G T C G T A A C T G C G T A A C G T A C G T A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:2
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GTCATAGA--
GTCATAAAAN
A C T G A C G T A G T C C G T A A C G T C G T A A C T G C G T A A C G T A C G T
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

NR1H4/MA1110.1/Jaspar

Match Rank:3
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---GTCATAGA
NAGGTCATTGA
A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C G T C G T A A C T G C G T A
C G A T T C G A C A T G C A T G A C G T G A T C T C G A A G C T G C A T T C A G T G C A

HOXC10/MA0905.1/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GTCATAGA--
GTCGTAAAAT
A C T G A C G T A G T C C G T A A C G T C G T A A C T G C G T A A C G T A C G T
T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

PH0066.1_Hoxc11/Jaspar

Match Rank:5
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GTCATAGA----
TAAAGTCGTAAAATAG
A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C G T C G T A A C T G C G T A A C G T A C G T A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

PH0047.1_Hoxa11/Jaspar

Match Rank:6
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GTCATAGA----
TAAAGTCGTAAAACAT
A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C G T C G T A A C T G C G T A A C G T A C G T A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

CDX1/MA0878.2/Jaspar

Match Rank:7
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GTCATAGA--
GGCCATAAAAC
A C G T A C T G A C G T A G T C C G T A A C G T C G T A A C T G C G T A A C G T A C G T
C A T G C T A G A G T C T G A C C G T A A C G T C T G A C G T A C T G A G T C A A G T C

HOXC9/MA0485.2/Jaspar

Match Rank:8
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GTCATAGA--
GTCGTAAAAT
A C T G A C G T A G T C C G T A A C G T C G T A A C T G C G T A A C G T A C G T
T C A G A G C T A G T C C T A G A C G T C G T A C G T A G T C A G C T A G A C T

HOXB9/MA1503.1/Jaspar

Match Rank:9
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GTCATAGA--
GTCGTAAAAT
A C T G A C G T A G T C C G T A A C G T C G T A A C T G C G T A A C G T A C G T
T C A G A G C T A G T C T C A G A C G T G C T A C G T A G T C A G C T A G A C T

HOXD10/MA1506.1/Jaspar

Match Rank:10
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GTCATAGA--
GGTCGTAAAAC
A C G T A C T G A C G T A G T C C G T A A C G T C G T A A C T G C G T A A C G T A C G T
T C A G T C A G A G C T G T A C T C A G A C G T C G T A C G T A G T C A G C T A G A T C