Information for 1-CATAGGAA (Motif 7)

A G T C C G T A A C G T C G T A A C T G A C T G C G T A C G T A
Reverse Opposite:
A C G T A C G T G T A C A G T C A C G T G T C A C G A T A C T G
p-value:1e-5
log p-value:-1.357e+01
Information Content per bp:1.902
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif60.00%
Number of Background Sequences with motif3398.6
Percentage of Background Sequences with motif4.39%
Average Position of motif in Targets103.0 +/- 62.2bp
Average Position of motif in Background102.7 +/- 73.1bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:1
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---CATAGGAA----
CCGCATAGCAACGGA
A C G T A C G T A C G T A G T C C G T A A C G T C G T A A C T G A C T G C G T A C G T A A C G T A C G T A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---CATAGGAA----
TACCATAGCAACGGT
A C G T A C G T A C G T A G T C C G T A A C G T C G T A A C T G A C T G C G T A C G T A A C G T A C G T A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

RFX1/MA0509.2/Jaspar

Match Rank:3
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---CATAGGAA---
TNCCATAGCAACNN
A C G T A C G T A C G T A G T C C G T A A C G T C G T A A C T G A C T G C G T A C G T A A C G T A C G T A C G T
G A C T C A T G A G T C G A T C G T C A G A C T T C G A C T A G G A T C C T G A T C G A G A T C G T C A T C A G

PB0115.1_Ehf_2/Jaspar

Match Rank:4
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CATAGGAA------
AAGATCGGAANTNNNA
A C G T A C G T A G T C C G T A A C G T C G T A A C T G A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
C G T A G C T A A T C G C G T A C G A T T G A C C A T G C T A G C G T A C G T A T G C A G A C T G T C A A G T C G C A T G C T A

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CATAGGAA--
AACAGGAAGT
A G T C C G T A A C G T C G T A A C T G A C T G C G T A C G T A A C G T A C G T
T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T

ETV4/MA0764.2/Jaspar

Match Rank:6
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CATAGGAA---
-ACAGGAAGTG
A G T C C G T A A C G T C G T A A C T G A C T G C G T A C G T A A C G T A C G T A C G T
A C G T T C G A T A G C G T C A A T C G A C T G C G T A G T C A A C T G A G C T T C A G

RFX3/MA0798.2/Jaspar

Match Rank:7
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CATAGGAA---
TNCCATAGCAACNN
A C G T A C G T A C G T A G T C C G T A A C G T C G T A A C T G A C T G C G T A C G T A A C G T A C G T A C G T
G A C T C A T G A G T C G A T C G T C A A G C T C T G A C T A G G A T C C T G A T C G A G A T C T G A C T C A G

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CATAGGAA---
SCCTAGCAACAG
A C G T A G T C C G T A A C G T C G T A A C T G A C T G C G T A C G T A A C G T A C G T A C G T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

PB0054.1_Rfx3_1/Jaspar

Match Rank:9
Score:0.69
Offset:-7
Orientation:forward strand
Alignment:-------CATAGGAA--------
TGTGACCCTTAGCAACCGATTAA
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T C G T A A C T G A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

IKZF1/MA1508.1/Jaspar

Match Rank:10
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CATAGGAA--
GAAACAGGAAGT
A C G T A C G T A G T C C G T A A C G T C G T A A C T G A C T G C G T A C G T A A C G T A C G T
T C A G T C G A T G C A T C G A T A G C C G T A C T A G T C A G T C G A C G T A T C A G A G C T