Information for 24-CATGAATATGAA (Motif 28)

A G T C C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A C T G C G T A C G T A
Reverse Opposite:
A C G T A C G T A G T C C G T A A C G T C G T A A C G T A C G T A G T C C G T A A C G T A C T G
p-value:1e-3
log p-value:-8.906e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets186.0 +/- 0.0bp
Average Position of motif in Background146.3 +/- 14.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--CATGAATATGAA-
CTCATGAATATTCAT
A C G T A C G T A G T C C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A C T G C G T A C G T A A C G T
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

PB0170.1_Sox17_2/Jaspar

Match Rank:2
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----CATGAATATGAA-
NTTNTATGAATGTGNNC
A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A C T G C G T A C G T A A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.73
Offset:-5
Orientation:reverse strand
Alignment:-----CATGAATATGAA
NNTNTCATGAATGT---
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A C T G C G T A C G T A
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CATGAATATGAA
-ATGMATATDC-
A G T C C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A C T G C G T A C G T A
A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CATGAATATGAA
-ATGAATATTC-
A G T C C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A C T G C G T A C G T A
A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:6
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CATGAATATGAA---
YATGCATATRCATRT
A G T C C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T
G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T

POU2F2/MA0507.1/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CATGAATATGAA
ATATGCAAATNNN
A C G T A G T C C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A C T G C G T A C G T A
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CATGAATATGAA
WATGCAAATGAG
A G T C C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A C T G C G T A C G T A
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:9
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CATGAATATGAA---
---GAAAGTGAAAGT
A G T C C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CATGAATATGAA
-AAGGATATNTN
A G T C C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A C T G C G T A C G T A
A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T