Information for 3-AWWTKKAYKWGA (Motif 3)

C G T A C G A T C G T A A C G T A C G T A C G T C G T A A G C T A C T G C G A T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A G T A C C T G A A C G T T G A C G T C A C G T A C G A T C G T A A C G T
p-value:1e-4
log p-value:-1.150e+01
Information Content per bp:1.782
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif408.3
Percentage of Background Sequences with motif0.50%
Average Position of motif in Targets97.5 +/- 74.1bp
Average Position of motif in Background97.3 +/- 70.5bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-AWWTKKAYKWGA---
NAATTTTACGAGNTNN
A C G T C G T A C G A T C G T A A C G T A C G T A C G T C G T A A G C T A C T G C G A T A C T G C G T A A C G T A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-AWWTKKAYKWGA---
ANATTTTACGAGNNNN
A C G T C G T A C G A T C G T A A C G T A C G T A C G T C G T A A G C T A C T G C G A T A C T G C G T A A C G T A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

HOXC13/MA0907.1/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AWWTKKAYKWGA
-NTTTTACGAGN
C G T A C G A T C G T A A C G T A C G T A C G T C G T A A G C T A C T G C G A T A C T G C G T A
A C G T C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AWWTKKAYKWGA
--TTTTATTRGN
C G T A C G A T C G T A A C G T A C G T A C G T C G T A A G C T A C T G C G A T A C T G C G T A
A C G T A C G T C G A T A C G T A C G T G C A T C G T A G A C T C A G T C T A G A T C G G A T C

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AWWTKKAYKWGA
-NTTTTATDRG-
C G T A C G A T C G T A A C G T A C G T A C G T C G T A A G C T A C T G C G A T A C T G C G T A
A C G T C T A G G C A T A C G T G C A T G A C T C G T A G A C T C A T G C T A G A T C G A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AWWTKKAYKWGA--
NNAATTTTATTGGNTN
A C G T A C G T C G T A C G A T C G T A A C G T A C G T A C G T C G T A A G C T A C T G C G A T A C T G C G T A A C G T A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:7
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AWWTKKAYKWGA
--TTTTATKRGG
C G T A C G A T C G T A A C G T A C G T A C G T C G T A A G C T A C T G C G A T A C T G C G T A
A C G T A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

PHOX2B/MA0681.2/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----AWWTKKAYKWGA
NNATAATTTGATTANN
A C G T A C G T A C G T A C G T C G T A C G A T C G T A A C G T A C G T A C G T C G T A A G C T A C T G C G A T A C T G C G T A
C G T A C G A T G C T A G C A T C G T A G C T A G C A T C G A T C G A T C T A G C G T A G C A T G C A T C G T A C G T A G C T A

PH0078.1_Hoxd13/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AWWTKKAYKWGA--
NNANTTTTATTGGNNN
A C G T A C G T C G T A C G A T C G T A A C G T A C G T A C G T C G T A A G C T A C T G C G A T A C T G C G T A A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

HOXB13/MA0901.2/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AWWTKKAYKWGA-
NNATTTTATTGGNN
A C G T C G T A C G A T C G T A A C G T A C G T A C G T C G T A A G C T A C T G C G A T A C T G C G T A A C G T
C G T A C G T A C G T A C G A T C G A T C G A T G C A T T G C A G C A T C G A T C T A G C A T G G C A T G C A T