Information for 17-GTTTATTACAAC (Motif 17)

A C T G A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G T C C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T A C T G A C G T C G T A C G T A A C G T C G T A C G T A C G T A A G T C
p-value:1e-4
log p-value:-9.547e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets159.0 +/- 0.0bp
Average Position of motif in Background38.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GTTTATTACAAC
NTTTTATGAC---
A C G T A C T G A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G T C C G T A C G T A A G T C
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:2
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GTTTATTACAAC
NTTTTATTACN--
A C G T A C T G A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G T C C G T A C G T A A G T C
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C A C G T A C G T

HOXD9/MA0913.2/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GTTTATTACAAC
NTTTTATTGC---
A C G T A C T G A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G T C C G T A C G T A A G T C
C T A G C A G T A C G T C G A T C G A T C G T A A G C T C A G T T C A G A G T C A C G T A C G T A C G T

CDX4/MA1473.1/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GTTTATTACAAC
GTTTTATTGCC--
A C G T A C T G A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G T C C G T A C G T A A G T C
T C A G C A G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G T C G T A C A C G T A C G T

PB0187.1_Tcf7_2/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GTTTATTACAAC---
CCGTATTATAAACAA
A C T G A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G T C C G T A C G T A A G T C A C G T A C G T A C G T
G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A

CDX2/MA0465.2/Jaspar

Match Rank:6
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GTTTATTACAAC
NTTTTATTGCNN-
A C G T A C T G A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G T C C G T A C G T A A G T C
C G A T G C A T C G A T G C A T G C A T T C G A G A C T C A G T C T A G G A T C G C A T G A C T A C G T

PH0046.1_Hoxa10/Jaspar

Match Rank:7
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----GTTTATTACAAC
TNAATTTTATTACCTN
A C G T A C G T A C G T A C G T A C T G A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G T C C G T A C G T A A G T C
G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A

CDX1/MA0878.2/Jaspar

Match Rank:8
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GTTTATTACAAC
GTTTTATGGCC--
A C G T A C T G A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G T C C G T A C G T A A G T C
T C A G C A G T A G C T A C G T A G C T C G T A A C G T A C T G T C A G G A T C G T A C A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GTTTATTACAAC-
NAATTTTATTACCNNN
A C G T A C G T A C G T A C T G A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G T C C G T A C G T A A G T C A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

Foxq1/MA0040.1/Jaspar

Match Rank:10
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GTTTATTACAAC
TATTGTTTATT-----
A C G T A C G T A C G T A C G T A C T G A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G T C C G T A C G T A A G T C
G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T A C G T A C G T A C G T A C G T A C G T