Information for 6-GGCTAGACTA (Motif 25)

A C T G A C T G A G T C A C G T C G T A A C T G C G T A A G T C A C G T C G T A
Reverse Opposite:
A C G T C G T A A C T G A C G T A G T C A C G T C G T A A C T G A G T C A G T C
p-value:1e-3
log p-value:-7.538e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif9.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets87.0 +/- 0.0bp
Average Position of motif in Background69.4 +/- 90.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD5/MA1557.1/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GGCTAGACTA
TGTCTAGACA-
A C G T A C T G A C T G A G T C A C G T C G T A A C T G C G T A A G T C A C G T C G T A
G A C T T C A G C A G T T G A C A C G T T G C A T A C G G T C A G A T C G C T A A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:2
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GGCTAGACTA
TGTCTAGACG-
A C G T A C T G A C T G A G T C A C G T C G T A A C T G C G T A A G T C A C G T C G T A
C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G A C G T

Smad4/MA1153.1/Jaspar

Match Rank:3
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:GGCTAGACTA
-TCTAGACA-
A C T G A C T G A G T C A C G T C G T A A C T G C G T A A G T C A C G T C G T A
A C G T A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GGCTAGACTA
--BCAGACWA
A C T G A C T G A G T C A C G T C G T A A C T G C G T A A G T C A C G T C G T A
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

ZSCAN29/MA1602.1/Jaspar

Match Rank:5
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GGCTAGACTA
NCNGTGTAGACG-
A C G T A C G T A C G T A C T G A C T G A G T C A C G T C G T A A C T G C G T A A G T C A C G T C G T A
A T G C G A T C A G T C T A C G A G C T C T A G C A G T C T G A A C T G T C G A A G T C T C A G A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GGCTAGACTA
--CCAGACAG
A C T G A C T G A G T C A C G T C G T A A C T G C G T A A G T C A C G T C G T A
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GGCTAGACTA--
--CCAGACRSVB
A C T G A C T G A G T C A C G T C G T A A C T G C G T A A G T C A C G T C G T A A C G T A C G T
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0185.1_Tcf1_2/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GGCTAGACTA--
TTGCCCGGATTAGG
A C G T A C G T A C T G A C T G A G T C A C G T C G T A A C T G C G T A A G T C A C G T C G T A A C G T A C G T
C G A T A C G T T C A G G A T C T A G C A G T C T A C G A C T G C T G A C A G T A C G T C G T A C A T G C T A G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GGCTAGACTA
AGGTGHCAGACA-
A C G T A C G T A C G T A C T G A C T G A G T C A C G T C G T A A C T G C G T A A G T C A C G T C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GGCTAGACTA
NGCTN-----
A C T G A C T G A G T C A C G T C G T A A C T G C G T A A G T C A C G T C G T A
T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T