Information for 18-CCACAGACGAGG (Motif 20)

A G T C A G T C C G T A A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T A G T C A C T G A C G T A G T C A C G T A C T G A C G T A C T G A C T G
p-value:1e-3
log p-value:-9.177e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets114.0 +/- 0.0bp
Average Position of motif in Background40.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX1/MA0002.2/Jaspar

Match Rank:1
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CCACAGACGAGG
AAACCACAGAN----
A C G T A C G T A C G T A G T C A G T C C G T A A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C T G A C T G
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:2
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CCACAGACGAGG
NWAACCACADNN----
A C G T A C G T A C G T A C G T A G T C A G T C C G T A A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C T G A C T G
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CCACAGACGAGG
--CCAGACRSVB
A G T C A G T C C G T A A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C T G A C T G
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCACAGACGAGG
AAACCACAGC-----
A C G T A C G T A C G T A G T C A G T C C G T A A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C T G A C T G
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T A C G T A C G T

GLI2/MA0734.2/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CCACAGACGAGG
AGACCACCCACGTCG
A C G T A C G T A C G T A G T C A G T C C G T A A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C T G A C T G
T G C A A C T G T G C A A G T C A G T C G T C A A G T C G T A C G T A C C T G A G T A C T A C G C G A T G A T C A T C G

GLI3/MA1491.1/Jaspar

Match Rank:6
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CCACAGACGAGG
AGACCACCCACGTCG
A C G T A C G T A C G T A G T C A G T C C G T A A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C T G A C T G
T G C A A C T G T G C A T G A C T G A C G T C A T A G C G T A C G T A C C T G A G T A C T A C G C G A T G A T C A T C G

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:7
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CCACAGACGAGG
NAAACCACAG------
A C G T A C G T A C G T A C G T A G T C A G T C C G T A A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C T G A C T G
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CCACAGACGAGG---
TCCCAGMCRAGCCCC
A G T C A G T C C G T A A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C T G A C T G A C G T A C G T A C G T
A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CCACAGACGAGG
AAACCACANN-----
A C G T A C G T A C G T A G T C A G T C C G T A A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C T G A C T G
G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CCACAGACGAGG
--CCAGACAG--
A G T C A G T C C G T A A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C T G A C T G
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T