Information for 3-GTGACAAATGGC (Motif 3)

A C T G A C G T A T C G C G T A A G T C C G T A C G T A C G T A A C G T A C T G A T C G A G T C
Reverse Opposite:
A C T G A T G C A G T C C G T A A C G T A C G T A C G T A C T G C G A T A T G C C G T A A G T C
p-value:1e-8
log p-value:-2.022e+01
Information Content per bp:1.945
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif6.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets74.7 +/- 25.2bp
Average Position of motif in Background94.1 +/- 42.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MSGN1/MA1524.1/Jaspar

Match Rank:1
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:GTGACAAATGGC-
-NNACATATGGCN
A C T G A C G T A T C G C G T A A G T C C G T A C G T A C G T A A C G T A C T G A T C G A G T C A C G T
A C G T A T C G T C A G T G C A A T G C T C G A G C A T C G T A A G C T A T C G T A C G A G T C T A C G

NEUROD1/MA1109.1/Jaspar

Match Rank:2
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GTGACAAATGGC--
-GGACAGATGGCAG
A C T G A C G T A T C G C G T A A G T C C G T A C G T A C G T A A C G T A C T G A T C G A G T C A C G T A C G T
A C G T C A T G T C A G T C G A T G A C C G T A A C T G T G C A G C A T C A T G A C T G A G T C T C G A T A C G

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:3
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GTGACAAATGGC-
-TGATTRATGGCY
A C T G A C G T A T C G C G T A A G T C C G T A C G T A C G T A A C G T A C T G A T C G A G T C A C G T
A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

NEUROG2(var.2)/MA1642.1/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GTGACAAATGGC-
GGAACAGATGGCA
A C T G A C G T A T C G C G T A A G T C C G T A C G T A C G T A A C G T A C T G A T C G A G T C A C G T
C T A G C T A G T C G A T G C A T A G C T C G A A C T G T G C A G A C T C A T G A C T G A G T C T G C A

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:5
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GTGACAAATGGC
ACCGTGACTAATTNN
A C G T A C G T A C G T A C T G A C G T A T C G C G T A A G T C C G T A C G T A C G T A A C G T A C T G A T C G A G T C
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GTGACAAATGGC
--AACAGATGGC
A C T G A C G T A T C G C G T A A G T C C G T A C G T A C G T A A C G T A C T G A T C G A G T C
A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C

Twist2/MA0633.1/Jaspar

Match Rank:7
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GTGACAAATGGC
--NACATATGGN
A C T G A C G T A T C G C G T A A G T C C G T A C G T A C G T A A C G T A C T G A T C G A G T C
A C G T A C G T G T C A G T C A A G T C C G T A A G C T C T G A A C G T A C T G A C T G A G C T

Bhlha15/MA0607.1/Jaspar

Match Rank:8
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GTGACAAATGGC
---ACATATGG-
A C T G A C G T A T C G C G T A A G T C C G T A C G T A C G T A A C G T A C T G A T C G A G T C
A C G T A C G T A C G T T C G A A G T C C G T A A C G T G T C A A C G T A C T G A T C G A C G T

TGIF2LY/MA1572.1/Jaspar

Match Rank:9
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GTGACAAATGGC-
-TGACAGCTGTCA
A C T G A C G T A T C G C G T A A G T C C G T A C G T A C G T A A C G T A C T G A T C G A G T C A C G T
A C G T G A C T T A C G C G T A G A T C C T G A A T C G T A G C G A C T C T A G G C A T A T G C C T G A

NEUROG2/MA0669.1/Jaspar

Match Rank:10
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GTGACAAATGGC
--AACATATGTC
A C T G A C G T A T C G C G T A A G T C C G T A C G T A C G T A A C G T A C T G A T C G A G T C
A C G T A C G T T C G A T G C A G A T C C T G A A C G T T G C A G C A T A C T G A G C T A G T C