Information for 11-CTAGTTATTCTA (Motif 11)

A G T C A C G T C G T A A C T G A C G T A C G T C G T A A C G T A C G T A G T C A C G T C G T A
Reverse Opposite:
A C G T C G T A A C T G C G T A C G T A A C G T C G T A C G T A A G T C A C G T C G T A A C T G
p-value:1e-4
log p-value:-9.751e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets177.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0040.1_Hmbox1/Jaspar

Match Rank:1
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CTAGTTATTCTA
GAAAACTAGTTAACATC
A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C T G A C G T A C G T C G T A A C G T A C G T A G T C A C G T C G T A
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

LBX1/MA0618.1/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CTAGTTATTCTA
CTAATTAA----
A G T C A C G T C G T A A C T G A C G T A C G T C G T A A C G T A C G T A G T C A C G T C G T A
T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A A C G T A C G T A C G T A C G T

HMBOX1/MA0895.1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTAGTTATTCTA
ACTAGTTAAC---
A C G T A G T C A C G T C G T A A C T G A C G T A C G T C G T A A C G T A C G T A G T C A C G T C G T A
T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C A C G T A C G T A C G T

PH0092.1_Lhx2/Jaspar

Match Rank:4
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CTAGTTATTCTA
NNNNNCTAATTAGTTTA
A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C T G A C G T A C G T C G T A A C G T A C G T A G T C A C G T C G T A
A T C G C A G T A C G T G T A C T C G A G A T C G A C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C A G T A C G T G C T A

PH0168.1_Hnf1b/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CTAGTTATTCTA-
ANNNCTAGTTAACNGNN
A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C T G A C G T A C G T C G T A A C G T A C G T A G T C A C G T C G T A A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

PH0033.1_Gbx1/Jaspar

Match Rank:6
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CTAGTTATTCTA
TGCCACTAATTAGTGTA
A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C T G A C G T A C G T C G T A A C G T A C G T A G T C A C G T C G T A
G C A T C T A G A T G C T G A C T C G A G T A C G A C T G T C A C T G A A G C T A C G T C T G A A C T G A C G T A C T G A C G T G C T A

VSX2/MA0726.1/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTAGTTATTCTA
CTAATTAG----
A G T C A C G T C G T A A C T G A C G T A C G T C G T A A C G T A C G T A G T C A C G T C G T A
A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G A C G T A C G T A C G T A C G T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CTAGTTATTCTA
NCTAATTA-----
A C G T A G T C A C G T C G T A A C T G A C G T A C G T C G T A A C G T A C G T A G T C A C G T C G T A
T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T A C G T A C G T A C G T A C G T

POU6F1/MA0628.1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CTAGTTATTCTA
ATTAATTAAT---
A C G T A G T C A C G T C G T A A C T G A C G T A C G T C G T A A C G T A C G T A G T C A C G T C G T A
T C G A G A C T G C A T G T C A G T C A A C G T C A G T C G T A C T G A A G C T A C G T A C G T A C G T

PH0001.1_Alx3/Jaspar

Match Rank:10
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----CTAGTTATTCTA
NTNAGCTAATTAGTTNA
A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C T G A C G T A C G T C G T A A C G T A C G T A G T C A C G T C G T A
A G T C C G A T A T G C T C G A C T A G G A T C A G C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C G A T A G C T G C T A