Information for 5-ATCACCTACCTA (Motif 6)

G T C A A C G T A G T C C G T A A G T C G T A C A C G T C G T A A T G C G T A C A G C T C G T A
Reverse Opposite:
A C G T C T G A A C T G A T C G C G A T C G T A A C T G C T A G A C G T A C T G C G T A A C G T
p-value:1e-11
log p-value:-2.622e+01
Information Content per bp:1.919
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets110.0 +/- 53.7bp
Average Position of motif in Background166.7 +/- 11.8bp
Strand Bias (log2 ratio + to - strand density)3.9
Multiplicity (# of sites on avg that occur together)2.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:ATCACCTACCTA--
TTGACCTANTTATN
G T C A A C G T A G T C C G T A A G T C G T A C A C G T C G T A A T G C G T A C A G C T C G T A A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

ZKSCAN5/MA1652.1/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--ATCACCTACCTA
NNCTCACCTCCTNN
A C G T A C G T G T C A A C G T A G T C C G T A A G T C G T A C A C G T C G T A A T G C G T A C A G C T C G T A
A G C T A G C T G T A C A G C T A G T C T C G A G A T C A G T C A C G T A G T C G A T C G A C T A G T C G A T C

RORC/MA1151.1/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:ATCACCTACCTA-
-TGACCTANTTAN
G T C A A C G T A G T C C G T A A G T C G T A C A C G T C G T A A T G C G T A C A G C T C G T A A C G T
A C G T G A C T T C A G T G C A G A T C G T A C A G C T T G C A T A G C G C A T C G A T G C T A G A C T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:ATCACCTACCTA
-NNACTTACCTN
G T C A A C G T A G T C C G T A A G T C G T A C A C G T C G T A A T G C G T A C A G C T C G T A
A C G T C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G

PB0154.1_Osr1_2/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:ATCACCTACCTA----
ACATGCTACCTAATAC
G T C A A C G T A G T C C G T A A G T C G T A C A C G T C G T A A T G C G T A C A G C T C G T A A C G T A C G T A C G T A C G T
C T G A G A T C G C T A G A C T T C A G G A T C A G C T C G T A G T A C G A T C G C A T T C G A G T C A C G A T G T C A T G A C

TCF12(var.2)/MA1648.1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:ATCACCTACCTA
CGCACCTGCCG-
G T C A A C G T A G T C C G T A A G T C G T A C A C G T C G T A A T G C G T A C A G C T C G T A
T A G C T A C G A G T C T C G A A T G C T A G C A G C T T C A G A G T C A G T C A T C G A C G T

ASCL1(var.2)/MA1631.1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-ATCACCTACCTA
CAGCACCTGCCCC
A C G T G T C A A C G T A G T C C G T A A G T C G T A C A C G T C G T A A T G C G T A C A G C T C G T A
A T G C C G T A T A C G A T G C C T G A A T G C T A G C A G C T T A C G A T G C G A T C A T G C A T G C

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:8
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:ATCACCTACCTA
-TGACCTARTT-
G T C A A C G T A G T C C G T A A G T C G T A C A C G T C G T A A T G C G T A C A G C T C G T A
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:ATCACCTACCTA
-TGACCTARTT-
G T C A A C G T A G T C C G T A A G T C G T A C A C G T C G T A A T G C G T A C A G C T C G T A
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T

TCF3/MA0522.3/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:ATCACCTACCTA
CGCACCTGCCC-
G T C A A C G T A G T C C G T A A G T C G T A C A C G T C G T A A T G C G T A C A G C T C G T A
T A G C T A C G A T G C T C G A A T G C T A G C A G C T T C A G A G T C T A G C A T G C A C G T