| p-value: | 1e-9 |
| log p-value: | -2.135e+01 |
| Information Content per bp: | 1.744 |
| Number of Target Sequences with motif | 34.0 |
| Percentage of Target Sequences with motif | 7.46% |
| Number of Background Sequences with motif | 1028.0 |
| Percentage of Background Sequences with motif | 2.13% |
| Average Position of motif in Targets | 104.6 +/- 57.9bp |
| Average Position of motif in Background | 98.8 +/- 55.0bp |
| Strand Bias (log2 ratio + to - strand density) | 0.7 |
| Multiplicity (# of sites on avg that occur together) | 1.29 |
| Motif File: | file (matrix) reverse opposite |
| SVG Files for Logos: | forward logo reverse opposite |
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer
| Match Rank: | 1 |
| Score: | 0.65 |
| Offset: | -1 |
| Orientation: | reverse strand |
| Alignment: | -TTTAGGGTTT TTTTATGGCB- |
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CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer
| Match Rank: | 2 |
| Score: | 0.64 |
| Offset: | -3 |
| Orientation: | reverse strand |
| Alignment: | ---TTTAGGGTTT DGWTTTATGRCN- |
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Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer
| Match Rank: | 3 |
| Score: | 0.62 |
| Offset: | 3 |
| Orientation: | reverse strand |
| Alignment: | TTTAGGGTTT- ---NGGGATTA |
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PH0064.1_Hoxb9/Jaspar
| Match Rank: | 4 |
| Score: | 0.61 |
| Offset: | -5 |
| Orientation: | reverse strand |
| Alignment: | -----TTTAGGGTTT- NGANTTTTATGGCTCN |
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|
|
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer
| Match Rank: | 5 |
| Score: | 0.60 |
| Offset: | -1 |
| Orientation: | forward strand |
| Alignment: | -TTTAGGGTTT TTTTATGGCM- |
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|
|
PH0047.1_Hoxa11/Jaspar
| Match Rank: | 6 |
| Score: | 0.60 |
| Offset: | -4 |
| Orientation: | reverse strand |
| Alignment: | ----TTTAGGGTTT-- NNGTTTTACGACTTTA |
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|
|
PH0066.1_Hoxc11/Jaspar
| Match Rank: | 7 |
| Score: | 0.59 |
| Offset: | -4 |
| Orientation: | reverse strand |
| Alignment: | ----TTTAGGGTTT-- NNNTTTTACGACNTTN |
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|
|
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer
| Match Rank: | 8 |
| Score: | 0.59 |
| Offset: | -1 |
| Orientation: | reverse strand |
| Alignment: | -TTTAGGGTTT TTTNATTGCY- |
|
|
|
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer
| Match Rank: | 9 |
| Score: | 0.58 |
| Offset: | -2 |
| Orientation: | reverse strand |
| Alignment: | --TTTAGGGTTT NTTTCATTRCHD |
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|
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PH0065.1_Hoxc10/Jaspar
| Match Rank: | 10 |
| Score: | 0.58 |
| Offset: | -4 |
| Orientation: | reverse strand |
| Alignment: | ----TTTAGGGTTT-- ANNTTTTACGACNTNN |
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