Information for 7-AATGTATAATCA (Motif 19)

C G T A C G T A A C G T A C T G A C G T C G T A A C G T C G T A C G T A A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A C G T A C G T C G T A A C G T C G T A A G T C C G T A A C G T A C G T
p-value:1e-3
log p-value:-8.372e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif7.14%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets72.0 +/- 0.0bp
Average Position of motif in Background80.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.73
Offset:1
Orientation:forward strand
Alignment:AATGTATAATCA
-ATGAATATTC-
C G T A C G T A A C G T A C T G A C G T C G T A A C G T C G T A C G T A A C G T A G T C C G T A
A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--AATGTATAATCA-
CTCATGAATATTCAT
A C G T A C G T C G T A C G T A A C G T A C T G A C G T C G T A A C G T C G T A C G T A A C G T A G T C C G T A A C G T
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.68
Offset:1
Orientation:forward strand
Alignment:AATGTATAATCA
-ATGMATATDC-
C G T A C G T A A C G T A C T G A C G T C G T A A C G T C G T A C G T A A C G T A G T C C G T A
A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AATGTATAATCA-
-WWATRTAAACAN
C G T A C G T A A C G T A C T G A C G T C G T A A C G T C G T A C G T A A C G T A G T C C G T A A C G T
A C G T G C A T G C A T C T G A A C G T C T G A A C G T C G T A C G T A C G T A A G T C G T C A G T C A

DMRT3/MA0610.1/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AATGTATAATCA
AATGTATCAAT-
C G T A C G T A A C G T A C T G A C G T C G T A A C G T C G T A C G T A A C G T A G T C C G T A
G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AATGTATAATCA-
-ATGCATAATTCA
C G T A C G T A A C G T A C T G A C G T C G T A A C G T C G T A C G T A A C G T A G T C C G T A A C G T
A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

PH0148.1_Pou3f3/Jaspar

Match Rank:7
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----AATGTATAATCA-
AAAATATGCATAATAAA
A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C T G A C G T C G T A A C G T C G T A C G T A A C G T A G T C C G T A A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AATGTATAATCA
TTAATGTTTAACC-
A C G T A C G T C G T A C G T A A C G T A C T G A C G T C G T A A C G T C G T A C G T A A C G T A G T C C G T A
A C G T G C A T C T G A G T C A G C A T T A C G C G A T C A G T G A C T G C T A C G T A G A T C G A T C A C G T

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AATGTATAATCA--
--WWTRTAAACAVG
C G T A C G T A A C G T A C T G A C G T C G T A A C G T C G T A C G T A A C G T A G T C C G T A A C G T A C G T
A C G T A C G T C G T A G C T A C G A T C T A G A C G T G T C A C G T A C G T A A G T C C G T A T G C A T A C G

POU4F2/MA0683.1/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AATGTATAATCA-----
-ATGCATAATTAATGAG
C G T A C G T A A C G T A C T G A C G T C G T A A C G T C G T A C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C T G A G A C T C T A G G T A C G C T A C G A T C G T A G C T A G C A T G C A T C T G A T C G A A C G T A C T G C T G A T C A G