| p-value: | 1e-3 |
| log p-value: | -7.445e+00 |
| Information Content per bp: | 1.530 |
| Number of Target Sequences with motif | 1.0 |
| Percentage of Target Sequences with motif | 6.25% |
| Number of Background Sequences with motif | 2.5 |
| Percentage of Background Sequences with motif | 0.00% |
| Average Position of motif in Targets | 110.0 +/- 0.0bp |
| Average Position of motif in Background | 66.0 +/- 0.0bp |
| Strand Bias (log2 ratio + to - strand density) | 10.0 |
| Multiplicity (# of sites on avg that occur together) | 1.00 |
| Motif File: | file (matrix) reverse opposite |
| SVG Files for Logos: | forward logo reverse opposite |
RORA(var.2)/MA0072.1/Jaspar
| Match Rank: | 1 |
| Score: | 0.70 |
| Offset: | -1 |
| Orientation: | forward strand |
| Alignment: | -TTATGTAGTTCA- TATAAGTAGGTCAA |
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RORC/MA1151.1/Jaspar
| Match Rank: | 2 |
| Score: | 0.66 |
| Offset: | 0 |
| Orientation: | forward strand |
| Alignment: | TTATGTAGTTCA ATAAGTAGGTCA |
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NFIL3/MA0025.2/Jaspar
| Match Rank: | 3 |
| Score: | 0.65 |
| Offset: | -2 |
| Orientation: | forward strand |
| Alignment: | --TTATGTAGTTCA TATTATGCAATAT- |
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NR1I3/MA1534.1/Jaspar
| Match Rank: | 4 |
| Score: | 0.64 |
| Offset: | 4 |
| Orientation: | reverse strand |
| Alignment: | TTATGTAGTTCA- ----AAAGTTCAT |
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RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer
| Match Rank: | 5 |
| Score: | 0.64 |
| Offset: | 2 |
| Orientation: | forward strand |
| Alignment: | TTATGTAGTTCA --AAYTAGGTCA |
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|
|
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer
| Match Rank: | 6 |
| Score: | 0.64 |
| Offset: | 2 |
| Orientation: | forward strand |
| Alignment: | TTATGTAGTTCA --AAYTAGGTCA |
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|
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer
| Match Rank: | 7 |
| Score: | 0.62 |
| Offset: | 1 |
| Orientation: | forward strand |
| Alignment: | TTATGTAGTTCA---- -AAWCTAGGTCARDNN |
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RORB/MA1150.1/Jaspar
| Match Rank: | 8 |
| Score: | 0.61 |
| Offset: | 2 |
| Orientation: | forward strand |
| Alignment: | TTATGTAGTTCA- --AATTAGGTCAC |
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|
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer
| Match Rank: | 9 |
| Score: | 0.61 |
| Offset: | 1 |
| Orientation: | forward strand |
| Alignment: | TTATGTAGTTCA- -WAABTAGGTCAV |
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TEF/MA0843.1/Jaspar
| Match Rank: | 10 |
| Score: | 0.61 |
| Offset: | -2 |
| Orientation: | reverse strand |
| Alignment: | --TTATGTAGTTCA NGTTACGTAATN-- |
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