Information for 3-GCAAGACGGC (Motif 8)

A C T G A G T C C G T A C G T A A C T G C G T A A G T C A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C A C T G A C G T A G T C A C G T A C G T A C T G A G T C
p-value:1e-3
log p-value:-8.645e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif7.69%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GCAAGACGGC---
-CAAGATGGCGGC
A C T G A G T C C G T A C G T A A C T G C G T A A G T C A C T G A C T G A G T C A C G T A C G T A C G T
A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

PROX1/MA0794.1/Jaspar

Match Rank:2
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GCAAGACGGC---
-CAAGACGCCTTA
A C T G A G T C C G T A C G T A A C T G C G T A A G T C A C T G A C T G A G T C A C G T A C G T A C G T
A C G T A G T C C T G A G C T A C T A G T C G A G A T C C A T G G A T C A G T C C A G T A G C T T C G A

YY1(Zf)/Promoter/Homer

Match Rank:3
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GCAAGACGGC---
-CAAGATGGCGGC
A C T G A G T C C G T A C G T A A C T G C G T A A G T C A C T G A C T G A G T C A C G T A C G T A C G T
A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GCAAGACGGC
-CCAGACAG-
A C T G A G T C C G T A C G T A A C T G C G T A A G T C A C T G A C T G A G T C
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GCAAGACGGC-
-CCAGACRSVB
A C T G A G T C C G T A C G T A A C T G C G T A A G T C A C T G A C T G A G T C A C G T
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

ZFP42/MA1651.1/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GCAAGACGGC--------
GTTCCAAAATGGCTGCCTCCG
A C G T A C G T A C G T A C T G A G T C C G T A C G T A A C T G C G T A A G T C A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A T C G G C A T G C A T G T A C G T A C C T G A C G T A T C G A C T G A A G C T T A C G A C T G G T A C A C G T A T C G G A T C A G T C G A C T A T G C A T G C T C A G

Smad4/MA1153.1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCAAGACGGC
TCTAGACA--
A C T G A G T C C G T A C G T A A C T G C G T A A G T C A C T G A C T G A G T C
A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GCAAGACGGC---
CAAATCCAGACATCACA
A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A A C T G C G T A A G T C A C T G A C T G A G T C A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

PB0124.1_Gabpa_2/Jaspar

Match Rank:9
Score:0.56
Offset:-7
Orientation:reverse strand
Alignment:-------GCAAGACGGC
NNNNGGGGGAAGANGG-
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A A C T G C G T A A G T C A C T G A C T G A G T C
C T A G A C G T A T C G T C G A C T A G C A T G T A C G C T A G C T A G C T G A C G T A C T A G T G C A G A T C C T A G A C T G A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GCAAGACGGC
ATGCCAGACN--
A C G T A C G T A C T G A G T C C G T A C G T A A C T G C G T A A G T C A C T G A C T G A G T C
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T