Information for 6-AGGTTGGCATCT (Motif 8)

C G T A A T C G A C T G A C G T A C G T A C T G A C T G A G T C C G T A A C G T A G T C A C G T
Reverse Opposite:
C G T A A C T G C G T A A C G T A C T G A G T C A G T C C G T A C G T A A G T C A T G C A C G T
p-value:1e-9
log p-value:-2.112e+01
Information Content per bp:1.962
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.54%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets32.0 +/- 20.9bp
Average Position of motif in Background89.1 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0029.1_Hic1_1/Jaspar

Match Rank:1
Score:0.82
Offset:-3
Orientation:reverse strand
Alignment:---AGGTTGGCATCT-
NGTAGGTTGGCATNNN
A C G T A C G T A C G T C G T A A T C G A C T G A C G T A C G T A C T G A C T G A G T C C G T A A C G T A G T C A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:AGGTTGGCATCT
-GGTTGGCAT--
C G T A A T C G A C T G A C G T A C G T A C T G A C T G A G T C C G T A A C G T A G T C A C G T
A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:AGGTTGGCATCT
-NNTTGGCANN-
C G T A A T C G A C T G A C G T A C G T A C T G A C T G A G T C C G T A A C G T A G T C A C G T
A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:AGGTTGGCATCT
--NTTGGCANN-
C G T A A T C G A C T G A C G T A C G T A C T G A C T G A G T C C G T A A C G T A G T C A C G T
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:5
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:AGGTTGGCATCT
-VGCTGGCA---
C G T A A T C G A C T G A C G T A C G T A C T G A C T G A G T C C G T A A C G T A G T C A C G T
A C G T T A G C T A C G A T G C C A G T T C A G T A C G G A T C C T G A A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:6
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:AGGTTGGCATCT
-NGTGGGCAT--
C G T A A T C G A C T G A C G T A C G T A C T G A C T G A G T C C G T A A C G T A G T C A C G T
A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AGGTTGGCATCT
--CTTGGCAA--
C G T A A T C G A C T G A C G T A C G T A C T G A C T G A G T C C G T A A C G T A G T C A C G T
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer

Match Rank:8
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:AGGTTGGCATCT-
---TTVACACCTH
C G T A A T C G A C T G A C G T A C G T A C T G A C T G A G T C C G T A A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T G A C T T C A G C T G A G T A C C T G A T A G C A G T C G A C T G A T C

NFIC/MA0161.2/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGGTTGGCATCT
TACTTGGCAGA-
C G T A A T C G A C T G A C G T A C G T A C T G A C T G A G T C C G T A A C G T A G T C A C G T
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A A C G T

HAND2/MA1638.1/Jaspar

Match Rank:10
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:AGGTTGGCATCT---
-----NNCATCTGNN
C G T A A T C G A C T G A C G T A C G T A C T G A C T G A G T C C G T A A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T G A C A G T C T C G A A G C T T G A C A G C T T A C G A C T G G A C T