Information for 12-TGGATAGTCG (Motif 24)

A C G T A C T G A C T G C G T A A C G T C G T A A C T G A C G T A G T C A C T G
Reverse Opposite:
A G T C A C T G C G T A A G T C A C G T C G T A A C G T A G T C A G T C C G T A
p-value:1e-3
log p-value:-8.404e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets67.0 +/- 0.0bp
Average Position of motif in Background120.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0136.1_IRC900814_2/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGGATAGTCG-----
ATGGAAAGTCGTAAAA
A C G T A C G T A C T G A C T G C G T A A C G T C G T A A C T G A C G T A G T C A C T G A C G T A C G T A C G T A C G T A C G T
C T G A A G C T A C T G C T A G C T G A T C G A G T C A A C T G G A C T A G T C C A T G A C G T C T G A C G T A T C G A G C T A

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGGATAGTCG
ATGAATATTC-
A C G T A C G T A C T G A C T G C G T A A C G T C G T A A C T G A C G T A G T C A C T G
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGGATAGTCG
ATGMATATDC-
A C G T A C G T A C T G A C T G C G T A A C G T C G T A A C T G A C G T A G T C A C T G
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TGGATAGTCG
CGTGGGTGGTCC
A C G T A C G T A C G T A C T G A C T G C G T A A C G T C G T A A C T G A C G T A G T C A C T G
A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:5
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TGGATAGTCG
AATGGAAAAT--
A C G T A C G T A C G T A C T G A C T G C G T A A C G T C G T A A C T G A C G T A G T C A C T G
T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T A C G T A C G T

ZNF354C/MA0130.1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TGGATAGTCG
GTGGAT-----
A C G T A C G T A C T G A C T G C G T A A C G T C G T A A C T G A C G T A G T C A C T G
A T C G A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T

GLI2/MA0734.2/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----TGGATAGTCG
CGNCGTGGGTGGTCN
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C G T C G T A A C T G A C G T A G T C A C T G
T A G C C T A G G C T A A T G C C A T G G A C T C A T G A C T G A C T G C A G T C T A G C T A G A C G T T G A C A C G T

GLI3/MA1491.1/Jaspar

Match Rank:8
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----TGGATAGTCG
CGNCGTGGGTGGTCN
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C G T C G T A A C T G A C G T A G T C A C T G
T A G C C T A G G C T A A T G C C A T G A G C T C A T G C A T G A T C G C A G T A C T G A C T G A C G T T G A C A C G T

ZKSCAN1/MA1585.1/Jaspar

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:TGGATAGTCG---
---ATAGTAGGTG
A C G T A C T G A C T G C G T A A C G T C G T A A C T G A C G T A G T C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T T C G A A G C T T G C A C T A G A C G T G T C A A T C G C A T G A G C T T A C G

NFATC4/MA1525.1/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TGGATAGTCG
AATGGAAAAT--
A C G T A C G T A C G T A C T G A C T G C G T A A C G T C G T A A C T G A C G T A G T C A C T G
T C G A C T G A G A C T A C T G A C T G G T C A C G T A G T C A T G C A G C A T A C G T A C G T