Information for 7-GCTGCCAAGGAC (Motif 7)

C T A G A G T C A C G T C A T G G A T C G T A C C T G A C T G A C A T G A C T G T G C A A T G C
Reverse Opposite:
A T C G A C G T A G T C G A T C A G C T A G C T A C T G C T A G G A T C C G T A C T A G A G T C
p-value:1e-5
log p-value:-1.223e+01
Information Content per bp:1.730
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif26.67%
Number of Background Sequences with motif472.7
Percentage of Background Sequences with motif0.79%
Average Position of motif in Targets121.4 +/- 44.3bp
Average Position of motif in Background102.2 +/- 69.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.2/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GCTGCCAAGGAC
NNTGCCAAGNN-
C T A G A G T C A C G T C A T G G A T C G T A C C T G A C T G A C A T G A C T G T G C A A T G C
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:2
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GCTGCCAAGGAC-
---NTCAAGGTCA
C T A G A G T C A C G T C A T G G A T C G T A C C T G A C T G A C A T G A C T G T G C A A T G C A C G T
A C G T A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GCTGCCAAGGAC
GGTGCCAAGT--
C T A G A G T C A C G T C A T G G A T C G T A C C T G A C T G A C A T G A C T G T G C A A T G C
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

NR5A1/MA1540.1/Jaspar

Match Rank:4
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GCTGCCAAGGAC--
---GTCAAGGTCAC
C T A G A G T C A C G T C A T G G A T C G T A C C T G A C T G A C A T G A C T G T G C A A T G C A C G T A C G T
A C G T A C G T A C G T A C T G G A C T A T G C C T G A C G T A A C T G A C T G G A C T A G T C C T G A G A T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCTGCCAAGGAC
-TTGCCAAG---
C T A G A G T C A C G T C A T G G A T C G T A C C T G A C T G A C A T G A C T G T G C A A T G C
A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:6
Score:0.63
Offset:5
Orientation:forward strand
Alignment:GCTGCCAAGGAC---
-----CAAGGHCANV
C T A G A G T C A C G T C A T G G A T C G T A C C T G A C T G A C A T G A C T G T G C A A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

BCL6/MA0463.2/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCTGCCAAGGAC--
ATGCTTTCGAGGAATT
A C G T A C G T C T A G A G T C A C G T C A T G G A T C G T A C C T G A C T G A C A T G A C T G T G C A A T G C A C G T A C G T
G C T A G A C T C T A G G T A C G C A T A C G T G C A T A G T C A C T G G C T A C T A G A C T G C T G A C G T A G A C T C A G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:8
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GCTGCCAAGGAC-
---BTCAAGGTCA
C T A G A G T C A C G T C A T G G A T C G T A C C T G A C T G A C A T G A C T G T G C A A T G C A C G T
A C G T A C G T A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A

MEIS2/MA0774.1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCTGCCAAGGAC
GCTGTCAA----
C T A G A G T C A C G T C A T G G A T C G T A C C T G A C T G A C A T G A C T G T G C A A T G C
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCTGCCAAGGAC
CGTGCCAAG---
C T A G A G T C A C G T C A T G G A T C G T A C C T G A C T G A C A T G A C T G T G C A A T G C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T