Information for 13-CGTGTATGCC (Motif 34)

A G T C A C T G A C G T A C T G A C G T C G T A A C G T A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C C G T A A C G T C G T A A G T C C G T A A G T C A C T G
p-value:1e-3
log p-value:-7.688e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets80.0 +/- 0.0bp
Average Position of motif in Background78.3 +/- 89.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---CGTGTATGCC---
NNGCGTGTGTGCNGCN
A C G T A C G T A C G T A G T C A C T G A C G T A C T G A C G T C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T

PB0094.1_Zfp128_1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CGTGTATGCC-----
TTNGGGTACGCCNNANN
A C G T A C G T A G T C A C T G A C G T A C T G A C G T C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T
G A C T C A G T C T G A T C A G A T C G A C T G A C G T C G T A A G T C C T A G G A T C G T A C G T C A G T C A C G T A C T A G T G C A

HIC2/MA0738.1/Jaspar

Match Rank:3
Score:0.60
Offset:5
Orientation:forward strand
Alignment:CGTGTATGCC----
-----ATGCCCACC
A G T C A C T G A C G T A C T G A C G T C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CGTGTATGCC---
NNNNTTGTGTGCTTNN
A C G T A C G T A C G T A G T C A C T G A C G T A C T G A C G T C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.58
Offset:5
Orientation:forward strand
Alignment:CGTGTATGCC----
-----ATGCCAACC
A G T C A C T G A C G T A C T G A C G T C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

PB0133.1_Hic1_2/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CGTGTATGCC-------
-GGGTGTGCCCAAAAGG
A G T C A C T G A C G T A C T G A C G T C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CGTGTATGCC
TGCGTG------
A C G T A C G T A G T C A C T G A C G T A C T G A C G T C G T A A C G T A C T G A G T C A G T C
G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CGTGTATGCC
GGACGTGC-----
A C G T A C G T A C G T A G T C A C T G A C G T A C T G A C G T C G T A A C G T A C T G A G T C A G T C
T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T A C G T A C G T A C G T A C G T

ZSCAN29/MA1602.1/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CGTGTATGCC--
CGTCTACACGGG
A G T C A C T G A C G T A C T G A C G T C G T A A C G T A C T G A G T C A G T C A C G T A C G T
A G T C C T A G A G C T G T A C A G C T G C T A G A T C C T G A A T G C T C A G C T A G T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CGTGTATGCC
VBSYGTCTGG-
A C G T A G T C A C T G A C G T A C T G A C G T C G T A A C G T A C T G A G T C A G T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T