Information for 17-TGCAATCAACCT (Motif 15)

A C G T A C T G A G T C C G T A C G T A A C G T A G T C C G T A C G T A A G T C A G T C A C G T
Reverse Opposite:
C G T A A C T G A C T G A C G T A C G T A C T G C G T A A C G T A C G T A C T G A G T C C G T A
p-value:1e-4
log p-value:-1.079e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets182.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Dux/MA0611.1/Jaspar

Match Rank:1
Score:0.73
Offset:1
Orientation:forward strand
Alignment:TGCAATCAACCT
-CCAATCAA---
A C G T A C T G A G T C C G T A C G T A A C G T A G T C C G T A C G T A A G T C A G T C A C G T
A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TGCAATCAACCT
RGCAATNAAA--
A C G T A C T G A G T C C G T A C G T A A C G T A G T C C G T A C G T A A G T C A G T C A C G T
C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A A C G T A C G T

PH0026.1_Duxbl/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TGCAATCAACCT--
CGACCCAATCAACGGTG
A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A A C G T A G T C C G T A C G T A A G T C A G T C A C G T A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

CDX2/MA0465.2/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TGCAATCAACCT
AAGCAATAAAAA-
A C G T A C G T A C T G A G T C C G T A C G T A A C G T A G T C C G T A C G T A A G T C A G T C A C G T
C T G A C G T A C T A G G A T C G T C A C T G A A G C T C G T A C G T A G C T A C G T A G C T A A C G T

PH0037.1_Hdx/Jaspar

Match Rank:5
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TGCAATCAACCT-
AAGGCGAAATCATCGCA
A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A A C G T A G T C C G T A C G T A A G T C A G T C A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

HOXD13/MA0909.2/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TGCAATCAACCT
CCCAATAAAAC-
A C G T A C T G A G T C C G T A C G T A A C G T A G T C C G T A C G T A A G T C A G T C A C G T
T A G C T A G C A G T C G T C A C T G A C G A T C G T A C T G A G T C A T G C A T G A C A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TGCAATCAACCT
GGCCATTAAC--
A C G T A C T G A G T C C G T A C G T A A C G T A G T C C G T A C G T A A G T C A G T C A C G T
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T

CDX1/MA0878.2/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TGCAATCAACCT
GGCCATAAAAC-
A C G T A C T G A G T C C G T A C G T A A C G T A G T C C G T A C G T A A G T C A G T C A C G T
C A T G C T A G A G T C T G A C C G T A A C G T C T G A C G T A C T G A G T C A A G T C A C G T

HOXD9/MA0913.2/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TGCAATCAACCT
-GCAATAAAAC-
A C G T A C T G A G T C C G T A C G T A A C G T A G T C C G T A C G T A A G T C A G T C A C G T
A C G T T C A G A G T C G T C A T C G A C G A T G C T A C G T A C G T A G T C A G A T C A C G T

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGCAATCAACCT
HDGYAATGAAAN-
A C G T A C G T A C T G A G T C C G T A C G T A A C G T A G T C C G T A C G T A A G T C A G T C A C G T
G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A A C G T