Information for 16-GCTTGATGGA (Motif 26)

A C T G A G T C A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A
Reverse Opposite:
A C G T A G T C A G T C C G T A C G A T A G T C C G T A C G T A A C T G A G T C
p-value:1e-5
log p-value:-1.188e+01
Information Content per bp:1.966
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif16.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets134.6 +/- 28.7bp
Average Position of motif in Background104.8 +/- 58.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0134.1_Pbx1/Jaspar

Match Rank:1
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----GCTTGATGGA---
NNNNNATTGATGNGTGN
A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C G T A C G T
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:2
Score:0.67
Offset:3
Orientation:forward strand
Alignment:GCTTGATGGA---
---TGATKGATGR
A C T G A G T C A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G

PBX1/MA0070.1/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GCTTGATGGA
TTTGATTGATGN-
A C G T A C G T A C G T A C T G A G T C A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:4
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GCTTGATGGA----
--ATGATKGATGRC
A C T G A G T C A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

MEIS1(var.2)/MA1639.1/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GCTTGATGGA
NNTGATTGATGNN
A C G T A C G T A C G T A C T G A G T C A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A
C G T A C G T A C G A T C A T G C G T A C G A T C A G T C A T G G T C A G A C T C T A G C T G A G A T C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCTTGATGGA
TGATTGATGA-
A C G T A C T G A G T C A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A
C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T

Dux/MA0611.1/Jaspar

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GCTTGATGGA
--TTGATTGN
A C T G A G T C A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A
A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCTTGATGGA-
-GTTAATGGCC
A C T G A G T C A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T
A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

PB0144.1_Lef1_2/Jaspar

Match Rank:9
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GCTTGATGGA-
NNANTGATTGATNTTN
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T
G C A T C G T A T C G A C A T G G A C T C T A G G T C A G A C T C G A T T A C G C G T A C G A T A T G C A G C T G C A T A T G C

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:10
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GCTTGATGGA--
--ATGATGCAAT
A C T G A G T C A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C G T
A C G T A C G T T G C A A G C T A C T G C G T A A G C T C A T G G A T C T G C A C G T A A G C T