Information for 4-CACCDCCDTTAG (Motif 5)

A G T C G T C A A G T C A G T C C A G T A G T C G T A C C A G T C G A T A C G T C G T A C T A G
Reverse Opposite:
A G T C C G A T G T C A C G T A G C T A A C T G A C T G G C T A A C T G C T A G A C G T A C T G
p-value:1e-5
log p-value:-1.187e+01
Information Content per bp:1.717
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif27.27%
Number of Background Sequences with motif257.7
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets109.3 +/- 71.5bp
Average Position of motif in Background93.8 +/- 68.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MAZ/MA1522.1/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CACCDCCDTTAG
CGCCCCTCCCC---
A C G T A C G T A G T C G T C A A G T C A G T C C A G T A G T C G T A C C A G T C G A T A C G T C G T A C T A G
A T G C A T C G A T G C T A G C T A G C T A G C C A G T T G A C T A G C A G T C A G T C A C G T A C G T A C G T

ZKSCAN5/MA1652.1/Jaspar

Match Rank:2
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CACCDCCDTTAG
NNCTCACCTCCTNN--
A C G T A C G T A C G T A C G T A G T C G T C A A G T C A G T C C A G T A G T C G T A C C A G T C G A T A C G T C G T A C T A G
A G C T A G C T G T A C A G C T A G T C T C G A G A T C A G T C A C G T A G T C G A T C G A C T A G T C G A T C A C G T A C G T

YY2/MA0748.2/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CACCDCCDTTAG
CGCCGCCATNN-
A G T C G T C A A G T C A G T C C A G T A G T C G T A C C A G T C G A T A C G T C G T A C T A G
A T G C C A T G A T G C T A G C C T A G A G T C A T G C T C G A A G C T A T G C C A G T A C G T

KLF5/MA0599.1/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CACCDCCDTTAG
GCCCCGCCCC---
A C G T A G T C G T C A A G T C A G T C C A G T A G T C G T A C C A G T C G A T A C G T C G T A C T A G
A C T G A G T C A G T C G T A C A G T C C T A G A G T C A G T C A G T C G A T C A C G T A C G T A C G T

PB0039.1_Klf7_1/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CACCDCCDTTAG
TCGACCCCGCCCCTAT
A C G T A C G T A C G T A C G T A G T C G T C A A G T C A G T C C A G T A G T C G T A C C A G T C G A T A C G T C G T A C T A G
G A C T A G T C C T A G T C G A G T A C G T A C T G A C G A T C C T A G A G T C A G T C A G T C G A T C G A C T G C T A C G A T

KLF4/MA0039.4/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CACCDCCDTTAG
CGCCCCACCCCC--
A C G T A C G T A G T C G T C A A G T C A G T C C A G T A G T C G T A C C A G T C G A T A C G T C G T A C T A G
T A G C A T C G G A T C G A T C G T A C G T A C C T G A A T G C T A G C G A T C G T A C A T G C A C G T A C G T

POL003.1_GC-box/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CACCDCCDTTAG
NAGCCCCGCCCCCN-
A C G T A C G T A C G T A G T C G T C A A G T C A G T C C A G T A G T C G T A C C A G T C G A T A C G T C G T A C T A G
G T A C T C G A T C A G G T A C G A T C T G A C G A T C C A T G A G T C A G T C A G T C G T A C G A T C G C A T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:8
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CACCDCCDTTAG
----BCMATTAG
A G T C G T C A A G T C A G T C C A G T A G T C G T A C C A G T C G A T A C G T C G T A C T A G
A C G T A C G T A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G

Isl1/MA1608.1/Jaspar

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CACCDCCDTTAG--
---ATCCATTAGCA
A G T C G T C A A G T C A G T C C A G T A G T C G T A C C A G T C G A T A C G T C G T A C T A G A C G T A C G T
A C G T A C G T A C G T C T G A A C G T G A T C G T A C C T G A G C A T G A C T G C T A C T A G A G T C T G C A

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CACCDCCDTTAG------
GCCTCCTCCMTCWGACTGKS
A C G T A C G T A G T C G T C A A G T C A G T C C A G T A G T C G T A C C A G T C G A T A C G T C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T
T A C G G A T C G A T C G A C T A G T C A G T C G C A T A G T C A G T C G T A C A G C T A G T C G C T A T C A G C T G A A G T C G A C T T A C G A C T G T A G C