Information for 1-ATGTTCCMTTGG (Motif 1)

C G T A C G A T A T C G A G C T A C G T A T G C G T A C G T C A C A G T C G A T A C T G C T A G
Reverse Opposite:
A G T C G T A C C G T A G C T A C A G T A C T G A T C G C G T A C T G A A T G C G C T A A C G T
p-value:1e-8
log p-value:-2.059e+01
Information Content per bp:1.671
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif77.78%
Number of Background Sequences with motif2885.6
Percentage of Background Sequences with motif3.19%
Average Position of motif in Targets65.1 +/- 47.4bp
Average Position of motif in Background100.9 +/- 75.6bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RFX1/MA0509.2/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ATGTTCCMTTGG--
CTGTTGCTATGGCA
C G T A C G A T A T C G A G C T A C G T A T G C G T A C G T C A C A G T C G A T A C T G C T A G A C G T A C G T
A G T C C A G T C T A G A G C T G A C T C T A G G A T C A G C T C T G A C A G T C T A G T C A G G T A C C T G A

FOXA1/MA0148.4/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--ATGTTCCMTTGG
NNATGTTTACAT--
A C G T A C G T C G T A C G A T A T C G A G C T A C G T A T G C G T A C G T C A C A G T C G A T A C T G C T A G
G C T A G T A C G C T A C G A T C T A G G C A T C A G T A C G T C T G A G A T C G C T A G C A T A C G T A C G T

RFX3/MA0798.2/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:ATGTTCCMTTGG--
CGGTTGCTATGGCA
C G T A C G A T A T C G A G C T A C G T A T G C G T A C G T C A C A G T C G A T A C T G C T A G A C G T A C G T
A G T C A C T G C T A G A G C T G A C T C T A G G A T C G A C T T C G A C A G T C T A G T C A G G T A C C T G A

DMRTA2/MA1478.1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-ATGTTCCMTTGG
AATGTAACAATT-
A C G T C G T A C G A T A T C G A G C T A C G T A T G C G T A C G T C A C A G T C G A T A C T G C T A G
T G C A G C T A G C A T C T A G G A C T C G T A C G T A T G A C T C G A C G T A G C A T C G A T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ATGTTCCMTTGG
CTGTTGCTAGGS
C G T A C G A T A T C G A G C T A C G T A T G C G T A C G T C A C A G T C G A T A C T G C T A G
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

Foxd3/MA0041.1/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--ATGTTCCMTTGG
GAATGTTTGTTT--
A C G T A C G T C G T A C G A T A T C G A G C T A C G T A T G C G T A C G T C A C A G T C G A T A C T G C T A G
C T A G G C T A G C T A G A C T C T A G A C G T C G A T C A G T C T A G G A C T A C G T A G C T A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:ATGTTCCMTTGG---
-GGTTGCCATGGCAA
C G T A C G A T A T C G A G C T A C G T A T G C G T A C G T C A C A G T C G A T A C T G C T A G A C G T A C G T A C G T
A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:ATGTTCCMTTGG-
-TGTTTAYTTAGC
C G T A C G A T A T C G A G C T A C G T A T G C G T A C G T C A C A G T C G A T A C T G C T A G A C G T
A C G T C G A T C T A G A C G T A C G T A C G T C G T A A G C T C G A T A G C T C G T A C T A G T A G C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:ATGTTCCMTTGG---
-NGTTGCCATGGCAA
C G T A C G A T A T C G A G C T A C G T A T G C G T A C G T C A C A G T C G A T A C T G C T A G A C G T A C G T A C G T
A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

NFATC4/MA1525.1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:ATGTTCCMTTGG
ATTTTCCATN--
C G T A C G A T A T C G A G C T A C G T A T G C G T A C G T C A C A G T C G A T A C T G C T A G
C G T A A C G T C A G T A C G T A C G T A G T C A G T C C T G A G A C T A G C T A C G T A C G T