Information for 1-TKCTCACC (Motif 3)

A C G T A C T G A G T C A C G T A G T C C G T A A G T C A G T C
Reverse Opposite:
A C T G A C T G A C G T A C T G C G T A A C T G G T A C C G T A
p-value:1e-5
log p-value:-1.173e+01
Information Content per bp:1.945
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif45.45%
Number of Background Sequences with motif2484.0
Percentage of Background Sequences with motif2.89%
Average Position of motif in Targets135.0 +/- 38.1bp
Average Position of motif in Background102.0 +/- 79.6bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-TKCTCACC--
NNACTTACCTN
A C G T A C G T A C T G A G T C A C G T A G T C C G T A A G T C A G T C A C G T A C G T
C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G

TBX18/MA1565.1/Jaspar

Match Rank:2
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-TKCTCACC---
NTTCACACCTCC
A C G T A C G T A C T G A G T C A C G T A G T C C G T A A G T C A G T C A C G T A C G T A C G T
A G C T G A C T G C A T A T G C G T C A A G T C C T G A A G T C A G T C A G C T G A T C G A T C

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:3
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TKCTCACC-
ATTAACACCT
A C G T A C G T A C T G A G T C A C G T A G T C C G T A A G T C A G T C A C G T
G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T

PB0013.1_Eomes_1/Jaspar

Match Rank:4
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----TKCTCACC-----
NNTTTTCACACCTTNNN
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T
C T G A C T G A C G A T C A G T C A G T A G C T T G A C C T G A A G T C C T G A T A G C G A T C G A C T G A C T C G A T A G C T T G A C

Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer

Match Rank:5
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TKCTCACC-
TTTCACACCT
A C G T A C G T A C T G A G T C A C G T A G T C C G T A A G T C A G T C A C G T
A C G T G C A T G A C T T A G C C G T A G A T C C G T A T G A C G A T C G A C T

TBR1/MA0802.1/Jaspar

Match Rank:6
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TKCTCACC-
TTTCACACCT
A C G T A C G T A C T G A G T C A C G T A G T C C G T A A G T C A G T C A C G T
C G A T C G A T G A C T T G A C C T G A T A G C T C G A T A G C G A T C G A C T

TBX21/MA0690.1/Jaspar

Match Rank:7
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TKCTCACC--
TTCACACCTT
A C G T A C T G A G T C A C G T A G T C C G T A A G T C A G T C A C G T A C G T
C G A T A G C T T G A C C T G A G T A C T C G A T G A C G A T C G A C T G A C T

EOMES/MA0800.1/Jaspar

Match Rank:8
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---TKCTCACC--
NTTTTCACACCTT
A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C C G T A A G T C A G T C A C G T A C G T
C T G A G C A T C A G T C G A T A G C T T G A C C T G A A G T C T C G A T G A C G A T C G A C T G A C T

TBX20/MA0689.1/Jaspar

Match Rank:9
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TKCTCACC--
CTTCACACCTA
A C G T A C G T A C T G A G T C A C G T A G T C C G T A A G T C A G T C A C G T A C G T
A G T C G C A T G C A T G T A C G T C A T G A C G T C A G T A C A G T C G A C T G C T A

Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer

Match Rank:10
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TKCTCACC--
TTVACACCTH
A C G T A C T G A G T C A C G T A G T C C G T A A G T C A G T C A C G T A C G T
A C G T G A C T T C A G C T G A G T A C C T G A T A G C A G T C G A C T G A T C