Information for 14-CTTTTACTGCAT (Motif 18)

A G T C A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C T G A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G A G T C C G T A A C T G A C G T C G T A C G T A C G T A C G T A A C T G
p-value:1e-4
log p-value:-9.599e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets171.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.2/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CTTTTACTGCAT
NTTTTATTGCNN
A G T C A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C T G A G T C C G T A A C G T
C G A T G C A T C G A T G C A T G C A T T C G A G A C T C A G T C T A G G A T C G C A T G A C T

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CTTTTACTGCAT
NTTTCATTRCHD
A G T C A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C T G A G T C C G T A A C G T
C G A T G C A T A C G T C G A T A G T C C G T A A C G T A C G T C T A G A G T C G A C T C A G T

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CTTTTACTGCAT
-TTTTATGGCM-
A G T C A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C T G A G T C C G T A A C G T
A C G T C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C A C G T

HOXD9/MA0913.2/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CTTTTACTGCAT
NTTTTATTGC--
A G T C A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C T G A G T C C G T A A C G T
C T A G C A G T A C G T C G A T C G A T C G T A A G C T C A G T T C A G A G T C A C G T A C G T

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CTTTTACTGCAT
-TTTTATGGCB-
A G T C A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C T G A G T C C G T A A C G T
A C G T G C A T C G A T G C A T G A C T G C T A A G C T C A T G C T A G A T G C A G T C A C G T

HOXB13/MA0901.2/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CTTTTACTGCAT
NNATTTTATTGGNN
A C G T A C G T A G T C A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C T G A G T C C G T A A C G T
C G T A C G T A C G T A C G A T C G A T C G A T G C A T T G C A G C A T C G A T C T A G C A T G G C A T G C A T

PH0075.1_Hoxd10/Jaspar

Match Rank:7
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CTTTTACTGCAT-
NTNAATTTTATTGNATT
A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C T G A G T C C G T A A C G T A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

CDX4/MA1473.1/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTTTTACTGCAT
GTTTTATTGCC-
A G T C A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C T G A G T C C G T A A C G T
T C A G C A G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G T C G T A C A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:9
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTTTTACTGCAT
-TTTAATTGCN-
A G T C A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C T G A G T C C G T A A C G T
A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C A C G T

CDX1/MA0878.2/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTTTTACTGCAT
GTTTTATGGCC-
A G T C A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C T G A G T C C G T A A C G T
T C A G C A G T A G C T A C G T A G C T C G T A A C G T A C T G T C A G G A T C G T A C A C G T