Information for 16-GCCATTAAAC (Motif 31)

A C T G A G T C A G T C C G T A A C G T A C G T C G T A C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T A C G T C G T A C G T A A C G T A C T G A C T G A G T C
p-value:1e-3
log p-value:-7.403e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif87.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets166.0 +/- 0.0bp
Average Position of motif in Background89.2 +/- 125.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX6-3/MA1530.1/Jaspar

Match Rank:1
Score:0.80
Offset:0
Orientation:forward strand
Alignment:GCCATTAAAC
CTCATTAAA-
A C T G A G T C A G T C C G T A A C G T A C G T C G T A C G T A C G T A A G T C
T A G C A G C T A G T C C G T A A C G T A G C T C T G A G C T A G C T A A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:2
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-GCCATTAAAC
NGCAATTAAA-
A C G T A C T G A G T C A G T C C G T A A C G T A C G T C G T A C G T A C G T A A G T C
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-GCCATTAAAC
GGCCATTAAC-
A C G T A C T G A G T C A G T C C G T A A C G T A C G T C G T A C G T A C G T A A G T C
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T

HOXD9/MA0913.2/Jaspar

Match Rank:4
Score:0.78
Offset:0
Orientation:forward strand
Alignment:GCCATTAAAC
GCAATAAAAC
A C T G A G T C A G T C C G T A A C G T A C G T C G T A C G T A C G T A A G T C
T C A G A G T C G T C A T C G A C G A T G C T A C G T A C G T A G T C A G A T C

CDX1/MA0878.2/Jaspar

Match Rank:5
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-GCCATTAAAC
GGCCATAAAAC
A C G T A C T G A G T C A G T C C G T A A C G T A C G T C G T A C G T A C G T A A G T C
C A T G C T A G A G T C T G A C C G T A A C G T C T G A C G T A C T G A G T C A A G T C

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-GCCATTAAAC
KGCCATAAAA-
A C G T A C T G A G T C A G T C C G T A A C G T A C G T C G T A C G T A C G T A A G T C
C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:7
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---GCCATTAAAC----
ACGGCCATAAAATTAAT
A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C G T A C G T C G T A C G T A C G T A A G T C A C G T A C G T A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

PH0064.1_Hoxb9/Jaspar

Match Rank:8
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---GCCATTAAAC---
AGAGCCATAAAATTCG
A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C G T A C G T C G T A C G T A C G T A A G T C A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GCCATTAAAC
VGCCATAAAA-
A C G T A C T G A G T C A G T C C G T A A C G T A C G T C G T A C G T A C G T A A G T C
T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:10
Score:0.74
Offset:3
Orientation:forward strand
Alignment:GCCATTAAAC
---ATTAAA-
A C T G A G T C A G T C C G T A A C G T A C G T C G T A C G T A C G T A A G T C
A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T