Information for 22-GCAATTAGAC (Motif 31)

A C T G A G T C C G T A C G T A A C G T A C G T C G T A A C T G C G T A A G T C
Reverse Opposite:
A C T G A C G T A G T C A C G T C G T A C G T A A C G T A C G T A C T G A G T C
p-value:1e-3
log p-value:-6.990e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif8.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets21.0 +/- 0.0bp
Average Position of motif in Background119.3 +/- 59.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:GCAATTAGAC
BCMATTAG--
A C T G A G T C C G T A C G T A A C G T A C G T C G T A A C T G C G T A A G T C
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T

Msx3/MA0709.1/Jaspar

Match Rank:2
Score:0.77
Offset:0
Orientation:forward strand
Alignment:GCAATTAGAC
CCAATTAA--
A C T G A G T C C G T A C G T A A C G T A C G T C G T A A C T G C G T A A G T C
T A G C G A T C T C G A T G C A A C G T G A C T C G T A T C G A A C G T A C G T

DLX5/MA1476.1/Jaspar

Match Rank:3
Score:0.77
Offset:0
Orientation:forward strand
Alignment:GCAATTAGAC
GCAATTAC--
A C T G A G T C C G T A C G T A A C G T A C G T C G T A A C T G C G T A A G T C
T A C G G A T C T G C A C G T A A C G T A C G T C G T A A G T C A C G T A C G T

MSX1/MA0666.1/Jaspar

Match Rank:4
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GCAATTAGAC
CCAATTAG--
A C T G A G T C C G T A C G T A A C G T A C G T C G T A A C T G C G T A A G T C
A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G A C G T A C G T

BARX1/MA0875.1/Jaspar

Match Rank:5
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GCAATTAGAC
GCAATTAG--
A C T G A G T C C G T A C G T A A C G T A C G T C G T A A C T G C G T A A G T C
T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G A C G T A C G T

GBX2/MA0890.1/Jaspar

Match Rank:6
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-GCAATTAGAC
ACCAATTAGC-
A C G T A C T G A G T C C G T A C G T A A C G T A C G T C G T A A C T G C G T A A G T C
T C G A A T G C G A T C T C G A T G C A A C G T A C G T G C T A T C A G A T G C A C G T

MSX2/MA0708.1/Jaspar

Match Rank:7
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GCAATTAGAC
CCAATTAA--
A C T G A G T C C G T A C G T A A C G T A C G T C G T A A C T G C G T A A G T C
T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A A C G T A C G T

TLX2/MA1577.1/Jaspar

Match Rank:8
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GCAATTAGAC
CTAATTAG--
A C T G A G T C C G T A C G T A A C G T A C G T C G T A A C T G C G T A A G T C
A G T C G A C T C T G A C G T A A C G T A C G T C G T A T C A G A C G T A C G T

Dlx2/MA0885.1/Jaspar

Match Rank:9
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GCAATTAGAC
GCAATTAA--
A C T G A G T C C G T A C G T A A C G T A C G T C G T A A C T G C G T A A G T C
T A C G G A T C G T C A G T C A A C G T A C G T C G T A G C T A A C G T A C G T

HOXB6/MA1500.1/Jaspar

Match Rank:10
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GCAATTAGAC
GTAATTAN--
A C T G A G T C C G T A C G T A A C G T A C G T C G T A A C T G C G T A A G T C
T C A G A G C T T G C A T G C A A C G T C A G T C T G A T C G A A C G T A C G T