Information for 2-CTCGTGAACT (Motif 24)

A G T C A C G T A G T C A C T G A C G T A C T G C G T A C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G A C G T A C G T A G T C C G T A A G T C A C T G C G T A A C T G
p-value:1e-3
log p-value:-8.671e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets135.0 +/- 0.0bp
Average Position of motif in Background114.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR1I3/MA1534.1/Jaspar

Match Rank:1
Score:0.73
Offset:3
Orientation:forward strand
Alignment:CTCGTGAACT--
---ATGAACTTT
A G T C A C G T A G T C A C T G A C G T A C T G C G T A C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C T G A G A C T T C A G G T C A G T C A A G T C A G C T G A C T G C A T

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CTCGTGAACT--
AAACCTCGTAAAATTT
A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C T G A C G T A C T G C G T A C G T A A G T C A C G T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

VDR/MA0693.2/Jaspar

Match Rank:3
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:CTCGTGAACT--
----TGAACTCA
A G T C A C G T A G T C A C T G A C G T A C T G C G T A C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T C T A G G T C A T G C A T G A C G A C T A G T C C T G A

HOXC13/MA0907.1/Jaspar

Match Rank:4
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CTCGTGAACT
GCTCGTAAAAA
A C G T A G T C A C G T A G T C A C T G A C G T A C T G C G T A C G T A A G T C A C G T
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PH0068.1_Hoxc13/Jaspar

Match Rank:5
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CTCGTGAACT--
AAAGCTCGTAAAATTT
A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C T G A C G T A C T G C G T A C G T A A G T C A C G T A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

TFE3/MA0831.2/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTCGTGAACT
CACGTGAC--
A G T C A C G T A G T C A C T G A C G T A C T G C G T A C G T A A G T C A C G T
A G T C C G T A A G T C T C A G A C G T A C T G T G C A A G T C A C G T A C G T

Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer

Match Rank:7
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CTCGTGAACT
NHGTCGTGAYDN
A C G T A C G T A G T C A C G T A G T C A C T G A C G T A C T G C G T A C G T A A G T C A C G T
C T A G G T C A C A T G A C G T A T G C T C A G C A G T A C T G G T C A A G T C C G A T A G T C

Arntl/MA0603.1/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CTCGTGAACT
NCACGTGACN-
A C G T A G T C A C G T A G T C A C T G A C G T A C T G C G T A C G T A A G T C A C G T
C T A G G T A C C T G A A G T C T C A G C G A T A C T G G T C A A G T C G T A C A C G T

RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer

Match Rank:9
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CTCGTGAACT---
---TTGAMCTTTG
A G T C A C G T A G T C A C T G A C G T A C T G C G T A C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T A G C T C A T G C T G A G T A C A G T C A G C T A G C T C A G T C T A G

NR4A2/MA0160.1/Jaspar

Match Rank:10
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CTCGTGAACT-
---GTGACCTT
A G T C A C G T A G T C A C T G A C G T A C T G C G T A C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T