Information for 1-CCCTTCAA (Motif 17)

A T G C G A T C T G A C A C G T C A G T G T A C C G T A C G T A
Reverse Opposite:
G C A T C G A T C A T G G T C A C G T A A C T G C T A G A T C G
p-value:1e-6
log p-value:-1.515e+01
Information Content per bp:1.805
Number of Target Sequences with motif90.0
Percentage of Target Sequences with motif10.92%
Number of Background Sequences with motif3040.5
Percentage of Background Sequences with motif6.24%
Average Position of motif in Targets92.6 +/- 52.1bp
Average Position of motif in Background99.0 +/- 57.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX2-8/MA0673.1/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CCCTTCAA
CCACTTGAA
A C G T A T G C G A T C T G A C A C G T C A G T G T A C C G T A C G T A
T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A

NKX2-3/MA0672.1/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CCCTTCAA
ACCACTTGAA
A C G T A C G T A T G C G A T C T G A C A C G T C A G T G T A C C G T A C G T A
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CCCTTCAA
NSCACTYVAV
A C G T A C G T A T G C G A T C T G A C A C G T C A G T G T A C C G T A C G T A
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

POL008.1_DCE_S_I/Jaspar

Match Rank:4
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CCCTTCAA
-GCTTCC-
A T G C G A T C T G A C A C G T C A G T G T A C C G T A C G T A
A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T

PH0114.1_Nkx2-5/Jaspar

Match Rank:5
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CCCTTCAA---
TAAGCCACTTGAATTT
A C G T A C G T A C G T A C G T A C G T A T G C G A T C T G A C A C G T C A G T G T A C C G T A C G T A A C G T A C G T A C G T
G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T

PH0134.1_Pbx1/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CCCTTCAA------
TCACCCATCAATAAACA
A C G T A C G T A C G T A T G C G A T C T G A C A C G T C A G T G T A C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

PH0111.1_Nkx2-2/Jaspar

Match Rank:7
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CCCTTCAA----
ATAACCACTTGAAAATT
A C G T A C G T A C G T A C G T A C G T A T G C G A T C T G A C A C G T C A G T G T A C C G T A C G T A A C G T A C G T A C G T A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCCTTCAA
RSCACTYRAG
A C G T A C G T A T G C G A T C T G A C A C G T C A G T G T A C C G T A C G T A
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

PH0113.1_Nkx2-4/Jaspar

Match Rank:9
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CCCTTCAA---
TAAGCCACTTGAAATT
A C G T A C G T A C G T A C G T A C G T A T G C G A T C T G A C A C G T C A G T G T A C C G T A C G T A A C G T A C G T A C G T
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CCCTTCAA
AASCACTCAA-
A C G T A C G T A C G T A T G C G A T C T G A C A C G T C A G T G T A C C G T A C G T A
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T