Information for 4-CATGGATRGCTA (Motif 5)

A G T C T C G A A C G T C T A G A T C G C G T A A C G T C T A G C T A G A G T C C G A T C G T A
Reverse Opposite:
C G A T C G T A C T A G G A T C G A T C T G C A A C G T A T G C G A T C G T C A A C G T T C A G
p-value:1e-4
log p-value:-1.082e+01
Information Content per bp:1.629
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif40.00%
Number of Background Sequences with motif1365.2
Percentage of Background Sequences with motif1.80%
Average Position of motif in Targets138.5 +/- 28.2bp
Average Position of motif in Background100.7 +/- 66.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CATGGATRGCTA-
GTCATGCHTGRCTGS
A C G T A C G T A G T C T C G A A C G T C T A G A T C G C G T A A C G T C T A G C T A G A G T C C G A T C G T A A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CATGGATRGCTA-
NGTCACGCTTGGCTGC
A C G T A C G T A C G T A G T C T C G A A C G T C T A G A T C G C G T A A C G T C T A G C T A G A G T C C G A T C G T A A C G T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

HMBOX1/MA0895.1/Jaspar

Match Rank:3
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:CATGGATRGCTA--
----GTTAACTAGN
A G T C T C G A A C G T C T A G A T C G C G T A A C G T C T A G C T A G A G T C C G A T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T

PH0170.1_Tgif2/Jaspar

Match Rank:4
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CATGGATRGCTA---
GTATTGACAGCTNNTT
A C G T A G T C T C G A A C G T C T A G A T C G C G T A A C G T C T A G C T A G A G T C C G A T C G T A A C G T A C G T A C G T
A C T G A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C A T G T A G C G A C T T C G A T A C G G C A T C G A T

PH0148.1_Pou3f3/Jaspar

Match Rank:5
Score:0.51
Offset:-5
Orientation:reverse strand
Alignment:-----CATGGATRGCTA
TNNATTATGCATANNTT
A C G T A C G T A C G T A C G T A C G T A G T C T C G A A C G T C T A G A T C G C G T A A C G T C T A G C T A G A G T C C G A T C G T A
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

PH0168.1_Hnf1b/Jaspar

Match Rank:6
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CATGGATRGCTA-----
AGCTGTTAACTAGCCGT
A G T C T C G A A C G T C T A G A T C G C G T A A C G T C T A G C T A G A G T C C G A T C G T A A C G T A C G T A C G T A C G T A C G T
C G T A A C T G A G T C A C G T C T A G G C A T G A C T C G T A G C T A A G T C A G C T C G T A T C A G A G T C G A T C A T C G A G C T

POU4F2/MA0683.1/Jaspar

Match Rank:7
Score:0.51
Offset:1
Orientation:forward strand
Alignment:CATGGATRGCTA-----
-ATGCATAATTAATGAG
A G T C T C G A A C G T C T A G A T C G C G T A A C G T C T A G C T A G A G T C C G A T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C T G A G A C T C T A G G T A C G C T A C G A T C G T A G C T A G C A T G C A T C T G A T C G A A C G T A C T G C T G A T C A G

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:8
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--CATGGATRGCTA
ATGATKGATGRC--
A C G T A C G T A G T C T C G A A C G T C T A G A T C G C G T A A C G T C T A G C T A G A G T C C G A T C G T A
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.49
Offset:7
Orientation:reverse strand
Alignment:CATGGATRGCTA
-------NGCTN
A G T C T C G A A C G T C T A G A T C G C G T A A C G T C T A G C T A G A G T C C G A T C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

EVX2/MA0888.1/Jaspar

Match Rank:10
Score:0.49
Offset:4
Orientation:forward strand
Alignment:CATGGATRGCTA--
----GGTAATTAGC
A G T C T C G A A C G T C T A G A T C G C G T A A C G T C T A G C T A G A G T C C G A T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T T A C G T A C G G A C T T G C A T C G A A C G T A G C T C T G A T A C G A T G C