Information for 2-ATTAAACGAA (Motif 9)

C G T A A C G T A C G T C G T A C G T A C G T A A G T C A C T G C G T A C G T A
Reverse Opposite:
A C G T A C G T A G T C A C T G A C G T A C G T A C G T C G T A C G T A A C G T
p-value:1e-3
log p-value:-8.189e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif6.25%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets111.0 +/- 0.0bp
Average Position of motif in Background131.3 +/- 0.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3a/MA0151.1/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:forward strand
Alignment:ATTAAACGAA
ATTAAA----
C G T A A C G T A C G T C G T A C G T A C G T A A G T C A C T G C G T A C G T A
C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T

BARHL2/MA0635.1/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:forward strand
Alignment:ATTAAACGAA
GCTAAACGGT
C G T A A C G T A C G T C G T A C G T A C G T A A G T C A C T G C G T A C G T A
T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T

BARHL1/MA0877.2/Jaspar

Match Rank:3
Score:0.70
Offset:1
Orientation:forward strand
Alignment:ATTAAACGAA
-CTAAACGG-
C G T A A C G T A C G T C G T A C G T A C G T A A G T C A C T G C G T A C G T A
A C G T T A G C C G A T C G T A G T C A C G T A A G T C C T A G C A T G A C G T

PB0016.1_Foxj1_1/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--ATTAAACGAA----
AAAGTAAACAAAAATT
A C G T A C G T C G T A A C G T A C G T C G T A C G T A C G T A A G T C A C T G C G T A C G T A A C G T A C G T A C G T A C G T
G C T A C G A T G C T A C T A G G A C T G T C A G C T A C G T A G A T C C G T A G T C A C G T A G T C A C G T A C A G T C A G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:5
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----ATTAAACGAA
NGCAATTAAA----
A C G T A C G T A C G T A C G T C G T A A C G T A C G T C G T A C G T A C G T A A G T C A C T G C G T A C G T A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T A C G T A C G T

NKX6-2/MA0675.1/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---ATTAAACGAA
CTAATTAA-----
A C G T A C G T A C G T C G T A A C G T A C G T C G T A C G T A C G T A A G T C A C T G C G T A C G T A
A T G C G A C T G T C A G C T A C G A T G C A T C T G A G C T A A C G T A C G T A C G T A C G T A C G T

PB0005.1_Bbx_1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--ATTAAACGAA---
TAATTCAATGAAGTG
A C G T A C G T C G T A A C G T A C G T C G T A C G T A C G T A A G T C A C T G C G T A C G T A A C G T A C G T A C G T
G C A T G C T A C T G A C G A T C G A T T G A C G C T A C G T A C G A T A C T G C G T A G C T A A T C G G C A T C T A G

NKX6-3/MA1530.1/Jaspar

Match Rank:8
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---ATTAAACGAA
CTCATTAAA----
A C G T A C G T A C G T C G T A A C G T A C G T C G T A C G T A C G T A A G T C A C T G C G T A C G T A
T A G C A G C T A G T C C G T A A C G T A G C T C T G A G C T A G C T A A C G T A C G T A C G T A C G T

PB0083.1_Tcf7_1/Jaspar

Match Rank:9
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----ATTAAACGAA--
TATAGATCAAAGGAAAA
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T C G T A C G T A C G T A A G T C A C T G C G T A C G T A A C G T A C G T
A C G T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C A T G C T A

NKX6-1/MA0674.1/Jaspar

Match Rank:10
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---ATTAAACGAA
GTAATTAA-----
A C G T A C G T A C G T C G T A A C G T A C G T C G T A C G T A C G T A A G T C A C T G C G T A C G T A
T A C G A G C T G T C A G T C A A C G T G C A T T C G A G C T A A C G T A C G T A C G T A C G T A C G T