Information for 4-YAGGCAGACGAT (Motif 4)

A G C T C G T A A C T G C T A G A G T C G T C A T A C G C G T A T A G C T A C G G T C A C A G T
Reverse Opposite:
G T C A A C G T A G T C A C T G C G A T A G T C A C G T A C T G A G T C G T A C A C G T T C G A
p-value:1e-5
log p-value:-1.200e+01
Information Content per bp:1.697
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif30.77%
Number of Background Sequences with motif699.4
Percentage of Background Sequences with motif0.98%
Average Position of motif in Targets99.8 +/- 65.1bp
Average Position of motif in Background99.6 +/- 75.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU5F1/MA1115.1/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-YAGGCAGACGAT
ATATGCAAATT--
A C G T A G C T C G T A A C T G C T A G A G T C G T C A T A C G C G T A T A G C T A C G G T C A C A G T
C G T A G C A T T C G A G A C T C T A G A G T C G C T A C T G A G C T A G C A T C A G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-YAGGCAGACGAT---
CGAAGCACACAAAATA
A C G T A G C T C G T A A C T G C T A G A G T C G T C A T A C G C G T A T A G C T A C G G T C A C A G T A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

POU2F3/MA0627.2/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--YAGGCAGACGAT
AATATGCAAATAA-
A C G T A C G T A G C T C G T A A C T G C T A G A G T C G T C A T A C G C G T A T A G C T A C G G T C A C A G T
G C T A C G T A G C A T C G T A C A G T C A T G A G T C C G T A C G T A C G T A C G A T C G T A G C T A A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-YAGGCAGACGAT
ATATGCAAATNNN
A C G T A G C T C G T A A C T G C T A G A G T C G T C A T A C G C G T A T A G C T A C G G T C A C A G T
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:YAGGCAGACGAT-
---CCAGACRSVB
A G C T C G T A A C T G C T A G A G T C G T C A T A C G C G T A T A G C T A C G G T C A C A G T A C G T
A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:YAGGCAGACGAT
TATGCAAATC--
A G C T C G T A A C T G C T A G A G T C G T C A T A C G C G T A T A G C T A C G G T C A C A G T
G A C T C G T A C A G T A C T G A G T C C G T A C G T A C G T A C A G T T G A C A C G T A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-YAGGCAGACGAT--
ATTTGCATACAATGG
A C G T A G C T C G T A A C T G C T A G A G T C G T C A T A C G C G T A T A G C T A C G G T C A C A G T A C G T A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-YAGGCAGACGAT
ATATGCAAAT---
A C G T A G C T C G T A A C T G C T A G A G T C G T C A T A C G C G T A T A G C T A C G G T C A C A G T
G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-YAGGCAGACGAT
TTATGCAAAT---
A C G T A G C T C G T A A C T G C T A G A G T C G T C A T A C G C G T A T A G C T A C G G T C A C A G T
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---YAGGCAGACGAT-
AAACAGACAAAGGAAT
A C G T A C G T A C G T A G C T C G T A A C T G C T A G A G T C G T C A T A C G C G T A T A G C T A C G G T C A C A G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T