Information for 4-BAGACCTCCATH (Motif 4)

A C T G C G T A A C T G C T G A G A T C T G A C A C G T A G T C A G T C C G T A C G A T G A T C
Reverse Opposite:
C T A G G C T A A C G T A C T G T C A G C G T A A C T G C T A G G A C T A G T C A C G T T G A C
p-value:1e-5
log p-value:-1.232e+01
Information Content per bp:1.747
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif362.3
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets139.8 +/- 38.2bp
Average Position of motif in Background104.2 +/- 80.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-BAGACCTCCATH
CNAGGCCT-----
A C G T A C T G C G T A A C T G C T G A G A T C T G A C A C G T A G T C A G T C C G T A C G A T G A T C
A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T A C G T A C G T

PB0201.1_Zfp281_2/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--BAGACCTCCATH---
AGGAGACCCCCAATTTG
A C G T A C G T A C T G C G T A A C T G C T G A G A T C T G A C A C G T A G T C A G T C C G T A C G A T G A T C A C G T A C G T A C G T
C G T A C A T G C A T G C G T A C A T G C T G A T G A C G T A C T A G C A G T C G T A C G C T A G C T A C G A T C G A T C G A T T C A G

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:3
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---BAGACCTCCATH--
CATAAGACCACCATTAC
A C G T A C G T A C G T A C T G C G T A A C T G C T G A G A T C T G A C A C G T A G T C A G T C C G T A C G A T G A T C A C G T A C G T
A G T C C G A T C A G T C T G A T G C A A C T G G T C A G A T C A T G C G T C A G A T C G A T C G C T A A C G T C A G T C T G A A G C T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-BAGACCTCCATH
CTAGGCCT-----
A C G T A C T G C G T A A C T G C T G A G A T C T G A C A C G T A G T C A G T C C G T A C G A T G A T C
T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:BAGACCTCCATH
-TGACCTTGAT-
A C T G C G T A A C T G C T G A G A T C T G A C A C G T A G T C A G T C C G T A C G A T G A T C
A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:6
Score:0.54
Offset:3
Orientation:forward strand
Alignment:BAGACCTCCATH-----
---ACATTCATGACACG
A C T G C G T A A C T G C T G A G A T C T G A C A C G T A G T C A G T C C G T A C G A T G A T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:7
Score:0.54
Offset:2
Orientation:forward strand
Alignment:BAGACCTCCATH--
--GYCATCMATCAT
A C T G C G T A A C T G C T G A G A T C T G A C A C G T A G T C A G T C C G T A C G A T G A T C A C G T A C G T
A C G T A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

ZNF354C/MA0130.1/Jaspar

Match Rank:8
Score:0.54
Offset:5
Orientation:forward strand
Alignment:BAGACCTCCATH
-----ATCCAC-
A C T G C G T A A C T G C T G A G A T C T G A C A C G T A G T C A G T C C G T A C G A T G A T C
A C G T A C G T A C G T A C G T A C G T T G C A G C A T A G T C A G T C C G T A A T G C A C G T

GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:BAGACCTCCATH---
NAGATWNBNATCTNN
A C T G C G T A A C T G C T G A G A T C T G A C A C G T A G T C A G T C C G T A C G A T G A T C A C G T A C G T A C G T
A T G C C G T A A C T G C G T A A C G T G C T A T C G A A G C T C G A T C G T A A C G T A G T C C G A T A C T G G A T C

PH0148.1_Pou3f3/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:BAGACCTCCATH-----
AAAATATGCATAATAAA
A C T G C G T A A C T G C T G A G A T C T G A C A C G T A G T C A G T C C G T A C G A T G A T C A C G T A C G T A C G T A C G T A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A