Information for 5-CAACAATG (Motif 36)

A G T C C G T A C G T A A G T C C G T A C G T A A C G T A C T G
Reverse Opposite:
A G T C C G T A A C G T A C G T A C T G A C G T A C G T A C T G
p-value:1e-2
log p-value:-5.069e+00
Information Content per bp:1.530
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif12616.9
Percentage of Background Sequences with motif15.92%
Average Position of motif in Targets109.9 +/- 64.0bp
Average Position of motif in Background101.1 +/- 76.4bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX13/MA1120.1/Jaspar

Match Rank:1
Score:0.85
Offset:0
Orientation:forward strand
Alignment:CAACAATG---
AAACAATGGCA
A G T C C G T A C G T A A G T C C G T A C G T A A C G T A C T G A C G T A C G T A C G T
C T G A T C G A C T G A A G T C G C T A C T G A G C A T C T A G T C A G T G A C G C T A

Sox5/MA0087.1/Jaspar

Match Rank:2
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:CAACAATG
NAACAAT-
A G T C C G T A C G T A A G T C C G T A C G T A A C G T A C T G
G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T

SOX8/MA0868.2/Jaspar

Match Rank:3
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-CAACAATG-
AGAACAATGG
A C G T A G T C C G T A C G T A A G T C C G T A C G T A A C G T A C T G A C G T
T G C A C T A G C T G A C G T A A G T C C G T A G T C A G C A T C T A G T A C G

PB0070.1_Sox30_1/Jaspar

Match Rank:4
Score:0.84
Offset:-3
Orientation:forward strand
Alignment:---CAACAATG-----
AATGAACAATGGAATT
A C G T A C G T A C G T A G T C C G T A C G T A A G T C C G T A C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-CAACAATG-
VRAACAATGG
A C G T A G T C C G T A C G T A A G T C C G T A C G T A A C G T A C T G A C G T
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

MF0011.1_HMG_class/Jaspar

Match Rank:6
Score:0.83
Offset:1
Orientation:reverse strand
Alignment:CAACAATG
-AACAAT-
A G T C C G T A C G T A A G T C C G T A C G T A A C G T A C T G
A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T

SOX2/MA0143.4/Jaspar

Match Rank:7
Score:0.83
Offset:0
Orientation:forward strand
Alignment:CAACAATG---
AAACAATGGAA
A G T C C G T A C G T A A G T C C G T A C G T A A C G T A C T G A C G T A C G T A C G T
C G T A C G T A G C T A G A T C G C T A T C G A C G A T C T A G C T A G C G T A G C T A

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:8
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-CAACAATG-
RNAACAATGG
A C G T A G T C C G T A C G T A A G T C C G T A C G T A A C G T A C T G A C G T
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer

Match Rank:9
Score:0.82
Offset:-3
Orientation:forward strand
Alignment:---CAACAATG-
VVRRAACAATGG
A C G T A C G T A C G T A G T C C G T A C G T A A G T C C G T A C G T A A C G T A C T G A C G T
T G A C T A G C T C A G T C G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T A C G

SOX9/MA0077.1/Jaspar

Match Rank:10
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:CAACAATG-
GAACAATGG
A G T C C G T A C G T A A G T C C G T A C G T A A C G T A C T G A C G T
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G