Information for 1-GGCACATACG (Motif 3)

A C T G A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A C T G
Reverse Opposite:
A G T C A C T G A C G T C G T A A C G T A C T G A C G T A C T G A G T C A G T C
p-value:1e-4
log p-value:-1.039e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets72.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---GGCACATACG---
AGCGGCACACACGCAA
A C G T A C G T A C G T A C T G A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A C T G A C G T A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GGCACATACG---
CGAAGCACACAAAATA
A C G T A C G T A C G T A C T G A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A C T G A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PB0026.1_Gm397_1/Jaspar

Match Rank:3
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------GGCACATACG-
CAGATGTGCACATACGT
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A C T G A C G T
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T

HIF1A/MA1106.1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GGCACATACG
NNGCACGTNC-
A C G T A C T G A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A C T G
T A C G T A C G C A T G A G T C T C G A A G T C C T A G G A C T T C G A A T G C A C G T

Twist2/MA0633.1/Jaspar

Match Rank:5
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GGCACATACG--
--NACATATGGN
A C T G A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A C T G A C G T A C G T
A C G T A C G T G T C A G T C A A G T C C G T A A G C T C T G A A C G T A C T G A C T G A G C T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GGCACATACG
BGCACGTA--
A C T G A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A C T G
A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T A C G T

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GGCACATACG
RGGGCACTAACY
A C G T A C G T A C T G A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A C T G
T C G A C A T G C A T G T A C G G T A C T C G A A G T C C A G T C T G A C G T A A G T C G A C T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:8
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GGCACATACG
-GCACGTAY-
A C T G A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A C T G
A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:9
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GGCACATACG-
-GCACGTACCC
A C T G A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A C T G A C G T
A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

NRF(NRF)/Promoter/Homer

Match Rank:10
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GGCACATACG---
-GCGCATGCGCAC
A C T G A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A C T G A C G T A C G T A C G T
A C G T A C T G A G T C A C T G A G T C C G T A A C G T A C T G A G T C A C T G A G T C C T G A T A G C