Information for 1-GTCTGTCT (Motif 26)

A C T G A C G T A G T C A C G T A C T G A C G T A G T C A C G T
Reverse Opposite:
C G T A A C T G C G T A A G T C C G T A A C T G C G T A G T A C
p-value:1e-3
log p-value:-6.980e+00
Information Content per bp:1.959
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif10234.5
Percentage of Background Sequences with motif3.70%
Average Position of motif in Targets110.3 +/- 55.5bp
Average Position of motif in Background100.4 +/- 144.2bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)2.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.75
Offset:2
Orientation:forward strand
Alignment:GTCTGTCT--
--CTGTCTGG
A C T G A C G T A G T C A C G T A C T G A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GTCTGTCT--
VBSYGTCTGG
A C T G A C G T A G T C A C G T A C T G A C G T A G T C A C G T A C G T A C G T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GTCTGTCT---
TGTCTGDCACCT
A C G T A C T G A C G T A G T C A C G T A C T G A C G T A G T C A C G T A C G T A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GTCTGTCT-------
NNTNNTGTCTGGNNTNG
A C G T A C G T A C T G A C G T A G T C A C G T A C T G A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad4/MA1153.1/Jaspar

Match Rank:5
Score:0.67
Offset:3
Orientation:forward strand
Alignment:GTCTGTCT---
---TGTCTAGA
A C T G A C G T A G T C A C G T A C T G A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GTCTGTCT-
GGTCTGGCAT
A C G T A C T G A C G T A G T C A C G T A C T G A C G T A G T C A C G T A C G T
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GTCTGTCT--
--TWGTCTGV
A C T G A C G T A G T C A C G T A C T G A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

PRDM4/MA1647.1/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GTCTGTCT---
GTCTGTTTCTA
A C T G A C G T A G T C A C G T A C T G A C G T A G T C A C G T A C G T A C G T A C G T
C T A G C A G T T A G C C G A T T C A G G C A T A G C T G C A T G T A C G C A T G C T A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GTCTGTCT---
CTGTCTGTCACCT
A C G T A C G T A C T G A C G T A G T C A C G T A C T G A C G T A G T C A C G T A C G T A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

MEIS1/MA0498.2/Jaspar

Match Rank:10
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GTCTGTCT-
--NTGTCAN
A C T G A C G T A G T C A C G T A C T G A C G T A G T C A C G T A C G T
A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A