Information for 6-AGACTAGCBAGA (Motif 7)

C G T A A C T G C G T A A G T C A C G T C G T A A C T G A G T C A C G T G T C A A T C G G T C A
Reverse Opposite:
A C G T A T G C A C G T T A C G C T A G A G T C A C G T C G T A A C T G A C G T A G T C A C G T
p-value:1e-4
log p-value:-1.090e+01
Information Content per bp:1.839
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif11.76%
Number of Background Sequences with motif18.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets79.7 +/- 80.9bp
Average Position of motif in Background99.2 +/- 69.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GATA1/MA0035.4/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--AGACTAGCBAGA
NNAGATTAGAN---
A C G T A C G T C G T A A C T G C G T A A G T C A C G T C G T A A C T G A G T C A C G T G T C A A T C G G T C A
C G T A G C A T C G T A C A T G C G T A C G A T G C A T G C T A C A T G C G T A G C T A A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AGACTAGCBAGA
BCAGACWA------
A C G T A C G T C G T A A C T G C G T A A G T C A C G T C G T A A C T G A G T C A C G T G T C A A T C G G T C A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGACTAGCBAGA
CCAGACRSVB----
A C G T A C G T C G T A A C T G C G T A A G T C A C G T C G T A A C T G A G T C A C G T G T C A A T C G G T C A
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T

PH0040.1_Hmbox1/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AGACTAGCBAGA---
GAAAACTAGTTAACATC
A C G T A C G T C G T A A C T G C G T A A G T C A C G T C G T A A C T G A G T C A C G T G T C A A T C G G T C A A C G T A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGACTAGCBAGA
GGATTAGC----
C G T A A C T G C G T A A G T C A C G T C G T A A C T G A G T C A C G T G T C A A T C G G T C A
T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T A C G T A C G T

SMAD5/MA1557.1/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AGACTAGCBAGA
TGTCTAGACA--
C G T A A C T G C G T A A G T C A C G T C G T A A C T G A G T C A C G T G T C A A T C G G T C A
G A C T T C A G C A G T T G A C A C G T T G C A T A C G G T C A G A T C G C T A A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--AGACTAGCBAGA
CCAGACAG------
A C G T A C G T C G T A A C T G C G T A A G T C A C G T C G T A A C T G A G T C A C G T G T C A A T C G G T C A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AGACTAGCBAGA
CGTCTAGACA--
C G T A A C T G C G T A A G T C A C G T C G T A A C T G A G T C A C G T G T C A A T C G G T C A
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T A C G T

Smad4/MA1153.1/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AGACTAGCBAGA
TGTCTAGA----
C G T A A C T G C G T A A G T C A C G T C G T A A C T G A G T C A C G T G T C A A T C G G T C A
G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A A C G T A C G T A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGACTAGCBAGA
RGGATTAR-----
A C G T C G T A A C T G C G T A A G T C A C G T C G T A A C T G A G T C A C G T G T C A A T C G G T C A
T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T A C G T A C G T A C G T