Information for 17-GCACAGACAAAT (Motif 17)

A C T G A G T C C G T A A G T C C G T A A C T G C G T A A G T C C G T A C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C T G A C G T A C T G A G T C
p-value:1e-3
log p-value:-9.057e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets21.0 +/- 0.0bp
Average Position of motif in Background194.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCACAGACAAAT----
AAACAGACAAAGGAAT
A C T G A G T C C G T A A G T C C G T A A C T G C G T A A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GCACAGACAAAT
--BCAGACWA--
A C T G A G T C C G T A A G T C C G T A A C T G C G T A A G T C C G T A C G T A C G T A A C G T
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:3
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GCACAGACAAAT
AGCGGCACACACGCAA
A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G T C C G T A A C T G C G T A A G T C C G T A C G T A C G T A A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GCACAGACAAAT
CGAAGCACACAAAATA
A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G T C C G T A A C T G C G T A A G T C C G T A C G T A C G T A A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GCACAGACAAAT
--CCAGACAG--
A C T G A G T C C G T A A G T C C G T A A C T G C G T A A G T C C G T A C G T A C G T A A C G T
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GCACAGACAAAT
--CCAGACRSVB
A C T G A G T C C G T A A G T C C G T A A C T G C G T A A G T C C G T A C G T A C G T A A C G T
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0177.1_Sox7_2/Jaspar

Match Rank:7
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----GCACAGACAAAT-----
NNCNNNCNCANACAATTAGNAC
A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G T C C G T A A C T G C G T A A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T C G A A T C G T G A C C A T G A G C T G T C A A G T C C G T A A T G C C T G A A T G C C G T A A G T C C G T A C G T A G C A T C A G T G C T A T A C G A T G C G C T A T G A C

Sox3/MA0514.1/Jaspar

Match Rank:8
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GCACAGACAAAT-
---AAAACAAAGG
A C T G A G T C C G T A A G T C C G T A A C T G C G T A A G T C C G T A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCACAGACAAAT
--ATATGCAAAT
A C T G A G T C C G T A A G T C C G T A A C T G C G T A A G T C C G T A C G T A C G T A A C G T
A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T

ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GCACAGACAAAT
RHHCAGAGAGGB
A C T G A G T C C G T A A G T C C G T A A C T G C G T A A G T C C G T A C G T A C G T A A C G T
T C A G G T C A G C T A A G T C C G T A A T C G T C G A T C A G C G T A A C T G A C T G A C T G