Information for 10-CATGGCGA (Motif 35)

A G T C C T G A A C G T C T A G A C T G A G T C A T C G G T C A
Reverse Opposite:
A C G T A T G C A C T G A G T C A G T C T G C A G A C T C T A G
p-value:1e-7
log p-value:-1.633e+01
Information Content per bp:1.769
Number of Target Sequences with motif183.0
Percentage of Target Sequences with motif1.25%
Number of Background Sequences with motif291.8
Percentage of Background Sequences with motif0.83%
Average Position of motif in Targets107.8 +/- 56.8bp
Average Position of motif in Background102.1 +/- 54.6bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.2/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CATGGCGA--
AGATGGCGGCG
A C G T A G T C C T G A A C G T C T A G A C T G A G T C A T C G G T C A A C G T A C G T
G T C A T A C G T C G A A G C T T A C G C T A G G A T C A T C G T A C G G T A C T A C G

Plagl1/MA1615.1/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CATGGCGA--
CCCTGGGGCCAGG
A C G T A C G T A C G T A G T C C T G A A C G T C T A G A C T G A G T C A T C G G T C A A C G T A C G T
T A G C T A G C T A G C G C A T T A C G T C A G T A C G T A C G G T A C A T G C T C G A A T C G T A C G

RFX3/MA0798.2/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CATGGCGA---
TNCCATAGCAACNN
A C G T A C G T A C G T A G T C C T G A A C G T C T A G A C T G A G T C A T C G G T C A A C G T A C G T A C G T
G A C T C A T G A G T C G A T C G T C A A G C T C T G A C T A G G A T C C T G A T C G A G A T C T G A C T C A G

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CATGGCGA--
TTGCCATGGCAACN
A C G T A C G T A C G T A C G T A G T C C T G A A C G T C T A G A C T G A G T C A T C G G T C A A C G T A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

RFX1/MA0509.2/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CATGGCGA---
TNCCATAGCAACNN
A C G T A C G T A C G T A G T C C T G A A C G T C T A G A C T G A G T C A T C G G T C A A C G T A C G T A C G T
G A C T C A T G A G T C G A T C G T C A G A C T T C G A C T A G G A T C C T G A T C G A G A T C G T C A T C A G

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CATGGCGA-
NTTGGCANN
A G T C C T G A A C G T C T A G A C T G A G T C A T C G G T C A A C G T
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFYB/MA0502.2/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CATGGCGA-----
-NTGGCCAATGAG
A G T C C T G A A C G T C T A G A C T G A G T C A T C G G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A G T C A C G T C T A G T C A G G A T C G T A C G T C A T C G A C G A T T A C G T C G A T A C G

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:8
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------CATGGCGA-
KGTTGCCATGGCAAC
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C T G A A C G T C T A G A C T G A G T C A T C G G T C A A C G T
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CATGGCGA--
CAAGGHCANV
A G T C C T G A A C G T C T A G A C T G A G T C A T C G G T C A A C G T A C G T
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CATGGCGA--
TTGCCATGGCAACC
A C G T A C G T A C G T A C G T A G T C C T G A A C G T C T A G A C T G A G T C A T C G G T C A A C G T A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C