Information for 4-GGAGACACTGAG (Motif 5)

A C T G A C T G C G T A A C T G C G T A A G T C C G T A A G T C A C G T A C T G C G T A A C T G
Reverse Opposite:
A G T C A C G T A G T C C G T A A C T G A C G T A C T G A C G T A G T C A C G T A G T C A G T C
p-value:1e-10
log p-value:-2.394e+01
Information Content per bp:1.530
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets113.8 +/- 44.1bp
Average Position of motif in Background122.2 +/- 8.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:1
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GGAGACACTGAG----
NANTGGAAAAANTGAGTCAN
A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G C G T A A G T C C G T A A G T C A C G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T
T A C G C T G A T C G A C G A T C T A G C T A G T C G A C T G A T C G A T C G A C G T A T C G A G C A T C A T G C G T A T A C G G C A T T G A C C G T A A G C T

Sox17/MA0078.1/Jaspar

Match Rank:2
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GGAGACACTGAG
---GACAATGNN
A C T G A C T G C G T A A C T G C G T A A G T C C G T A A G T C A C G T A C T G C G T A A C T G
A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

ZSCAN4/MA1155.1/Jaspar

Match Rank:3
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GGAGACACTGAG--
TGCACACACTGAAAA
A C G T A C T G A C T G C G T A A C T G C G T A A G T C C G T A A G T C A C G T A C T G C G T A A C T G A C G T A C G T
G A C T T C A G A T G C C G T A A G T C C G T A G A T C T G C A G T A C A C G T A C T G C G T A G T C A C T G A C T G A

Sox6/MA0515.1/Jaspar

Match Rank:4
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GGAGACACTGAG
-AAAACAATGG-
A C T G A C T G C G T A A C T G C G T A A G T C C G T A A G T C A C G T A C T G C G T A A C T G
A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T

ZNF16/MA1654.1/Jaspar

Match Rank:5
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----GGAGACACTGAG------
AATAGGGAGCCATGGAAGGTTTT
A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G C G T A A G T C C G T A A G T C A C G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
T G C A T C G A A C G T C T G A C T A G C A T G A T C G C T G A C T A G G A T C G A T C T G C A A G C T C A T G T C A G T C G A C T G A C T A G C T A G A G C T A C G T A G C T A G C T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GGAGACACTGAG
--AAGCACTTAA
A C T G A C T G C G T A A C T G C G T A A G T C C G T A A G T C A C G T A C T G C G T A A C T G
A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GGAGACACTGAG
--MRSCACTYAA
A C T G A C T G C G T A A C T G C G T A A G T C C G T A A G T C A C G T A C T G C G T A A C T G
A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GGAGACACTGAG
CCAGACAG----
A C T G A C T G C G T A A C T G C G T A A G T C C G T A A G T C A C G T A C T G C G T A A C T G
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

SOX13/MA1120.1/Jaspar

Match Rank:9
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GGAGACACTGAG-
--AAACAATGGCA
A C T G A C T G C G T A A C T G C G T A A G T C C G T A A G T C A C G T A C T G C G T A A C T G A C G T
A C G T A C G T C T G A T C G A C T G A A G T C G C T A C T G A G C A T C T A G T C A G T G A C G C T A

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GGAGACACTGAG-
--AGCCACTCAAG
A C T G A C T G C G T A A C T G C G T A A G T C C G T A A G T C A C G T A C T G C G T A A C T G A C G T
A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G