Information for 3-TGCCACTCCG (Motif 19)

A C G T A C T G A G T C A G T C C G T A A G T C A C G T A G T C A G T C A C T G
Reverse Opposite:
A G T C A C T G A C T G C G T A A C T G A C G T A C T G A C T G A G T C C G T A
p-value:1e-3
log p-value:-8.539e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.0 +/- 0.0bp
Average Position of motif in Background31.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0114.1_Egr1_2/Jaspar

Match Rank:1
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----TGCCACTCCG--
NNAGTCCCACTCNNNN
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A A G T C A C G T A G T C A G T C A C T G A C G T A C G T
T G A C G A T C C G T A C T A G G C A T G T A C G A T C G A T C G T C A A G T C A G C T G A T C T A G C C T A G T G A C T G C A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TGCCACTCCG
SCTGTCAVTCAV
A C G T A C G T A C G T A C T G A G T C A G T C C G T A A G T C A C G T A G T C A G T C A C T G
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

PKNOX1/MA0782.2/Jaspar

Match Rank:3
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----TGCCACTCCG-
NNGCTGTCACTCANN
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A A G T C A C G T A G T C A G T C A C T G A C G T
G A C T T C G A A T C G T G A C G C A T C T A G G A C T T A G C G C T A T G A C G A C T A G T C G C T A C G T A G C T A

PBX3/MA1114.1/Jaspar

Match Rank:4
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----TGCCACTCCG--
NNNCCTGTCACTCANNN
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A A G T C A C G T A G T C A G T C A C T G A C G T A C G T
T A G C A G T C T A C G A T G C T G A C G A C T A T C G G A C T A T G C G T C A T G A C G C A T A G T C G C T A T G A C T G A C A T G C

MAZ/MA1522.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TGCCACTCCG-
CGCCCCTCCCC
A C G T A C T G A G T C A G T C C G T A A G T C A C G T A G T C A G T C A C T G A C G T
A T G C A T C G A T G C T A G C T A G C T A G C C A G T T G A C T A G C A G T C A G T C

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:6
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TGCCACTCCG-
-GCCMCRCCCH
A C G T A C T G A G T C A G T C C G T A A G T C A C G T A G T C A G T C A C T G A C G T
A C G T C T A G G T A C G A T C G T C A G A T C C T G A A G T C A G T C A G T C G C A T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TGCCACTCCG
MRSCACTYAA
A C G T A C T G A G T C A G T C C G T A A G T C A C G T A G T C A G T C A C T G
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TGCCACTCCG
NCTGTCAATCAN
A C G T A C G T A C G T A C T G A G T C A G T C C G T A A G T C A C G T A G T C A G T C A C T G
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TGCCACTCCG-
-GCCACACCCA
A C G T A C T G A G T C A G T C C G T A A G T C A C G T A G T C A G T C A C T G A C G T
A C G T C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A

NKX2-2/MA1645.1/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TGCCACTCCG---
TAACCACTCAAGAA
A C G T A C G T A C T G A G T C A G T C C G T A A G T C A C G T A G T C A G T C A C T G A C G T A C G T A C G T
G A C T G C T A C G T A T G A C G A T C G C T A G T A C G C A T A T G C G T C A T C G A T C A G G C T A G C T A