Information for 1-HGATCAGGACAD (Motif 1)

G A C T A T C G C G T A A G C T A T G C C G T A A C T G A C T G C T G A A G T C C G T A C A T G
Reverse Opposite:
G A T C A C G T A C T G A G C T G T A C A G T C C G A T A T C G T C G A C G A T A T G C C G T A
p-value:1e-6
log p-value:-1.427e+01
Information Content per bp:1.733
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif622.6
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets127.0 +/- 41.8bp
Average Position of motif in Background100.5 +/- 113.5bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.75
Offset:3
Orientation:forward strand
Alignment:HGATCAGGACAD
---TRAGGTCA-
G A C T A T C G C G T A A G C T A T G C C G T A A C T G A C T G C T G A A G T C C G T A C A T G
A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.67
Offset:5
Orientation:forward strand
Alignment:HGATCAGGACAD
-----AGGTCA-
G A C T A T C G C G T A A G C T A T G C C G T A A C T G A C T G C T G A A G T C C G T A C A T G
A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T

THAP1/MA0597.1/Jaspar

Match Rank:3
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:HGATCAGGACAD
---TNNGGGCAG
G A C T A T C G C G T A A G C T A T G C C G T A A C T G A C T G C T G A A G T C C G T A C A T G
A C G T A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G

Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:HGATCAGGACAD-
-CYWSTGGTCARA
G A C T A T C G C G T A A G C T A T G C C G T A A C T G A C T G C T G A A G T C C G T A C A T G A C G T
A C G T G A T C G A C T C G T A T A G C C G A T A C T G A C T G G A C T T G A C C G T A T C A G C T G A

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:5
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----HGATCAGGACAD
GGTCANYTGAGGWCA-
A C G T A C G T A C G T A C G T G A C T A T C G C G T A A G C T A T G C C G T A A C T G A C T G C T G A A G T C C G T A C A T G
C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.64
Offset:1
Orientation:forward strand
Alignment:HGATCAGGACAD
-WDNCTGGGCA-
G A C T A T C G C G T A A G C T A T G C C G T A A C T G A C T G C T G A A G T C C G T A C A T G
A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T

THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer

Match Rank:7
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----HGATCAGGACAD
GGTCACCTGAGGTCA-
A C G T A C G T A C G T A C G T G A C T A T C G C G T A A G C T A T G C C G T A A C T G A C T G C T G A A G T C C G T A C A T G
C A T G A C T G A G C T A T G C C G T A A T G C G T A C G A C T T A C G C T G A A C T G A C T G G C A T A T G C C T G A A C G T

ATF2/MA1632.1/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:HGATCAGGACAD-
AAATGAGGTCATT
G A C T A T C G C G T A A G C T A T G C C G T A A C T G A C T G C T G A A G T C C G T A C A T G A C G T
C G T A C T G A T C G A G A C T C A T G G C T A A C T G T C A G G C A T G T A C C T G A A G C T G A C T

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.61
Offset:4
Orientation:forward strand
Alignment:HGATCAGGACAD
----AAGGTCAC
G A C T A T C G C G T A A G C T A T G C C G T A A C T G A C T G C T G A A G T C C G T A C A T G
A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:HGATCAGGACAD---
AAWCTAGGTCARDNN
G A C T A T C G C G T A A G C T A T G C C G T A A C T G A C T G C T G A A G T C C G T A C A T G A C G T A C G T A C G T
C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A