Information for 2-GAGATGCATT (Motif 7)

A C T G C G T A T A C G G T C A C A G T A T C G A T G C C T G A A C G T C G A T
Reverse Opposite:
G C T A T G C A G A C T T A C G T A G C G T C A C A G T A T G C G C A T T G A C
p-value:1e-9
log p-value:-2.258e+01
Information Content per bp:1.586
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif3.69%
Number of Background Sequences with motif533.7
Percentage of Background Sequences with motif1.10%
Average Position of motif in Targets101.0 +/- 60.1bp
Average Position of motif in Background97.3 +/- 58.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GAGATGCATT
GHATATKCAT-
A C G T A C T G C G T A T A C G G T C A C A G T A T C G A T G C C T G A A C G T C G A T
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T

HAND2/MA1638.1/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GAGATGCATT
ACCAGATGGC--
A C G T A C G T A C T G C G T A T A C G G T C A C A G T A T C G A T G C C T G A A C G T C G A T
C T G A T G A C A T G C T C G A A C T G T C G A A G C T T C A G A C T G G A T C A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GAGATGCATT-----
-ACATTCATGACACG
A C T G C G T A T A C G G T C A C A G T A T C G A T G C C T G A A C G T C G A T A C G T A C G T A C G T A C G T A C G T
A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GAGATGCATT
GAATATTCAT-
A C G T A C T G C G T A T A C G G T C A C A G T A T C G A T G C C T G A A C G T C G A T
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GAGATGCATT
AAGATATCCTT-
A C G T A C G T A C T G C G T A T A C G G T C A C A G T A T C G A T G C C T G A A C G T C G A T
G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GAGATGCATT------
NNCATTCATTCATNNN
A C T G C G T A T A C G G T C A C A G T A T C G A T G C C T G A A C G T C G A T A C G T A C G T A C G T A C G T A C G T A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

PH0148.1_Pou3f3/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GAGATGCATT-----
AAAATATGCATAATAAA
A C G T A C G T A C T G C G T A T A C G G T C A C A G T A T C G A T G C C T G A A C G T C G A T A C G T A C G T A C G T A C G T A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:8
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----GAGATGCATT
AYATGYATATGCATR
A C G T A C G T A C G T A C G T A C G T A C T G C G T A T A C G G T C A C A G T A T C G A T G C C T G A A C G T C G A T
C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G

DMRT3/MA0610.1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GAGATGCATT
NTTGATACATT
A C G T A C T G C G T A T A C G G T C A C A G T A T C G A T G C C T G A A C G T C G A T
C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GAGATGCATT----
GACCACATTCATACAAT
A C G T A C G T A C G T A C T G C G T A T A C G G T C A C A G T A T C G A T G C C T G A A C G T C G A T A C G T A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T