Information for 4-CGCCGATC (Motif 41)

A G T C A C T G A G T C A G T C A C T G C G T A A C G T A G T C
Reverse Opposite:
A C T G C G T A A C G T A G T C A C T G A C T G A G T C A C T G
p-value:1e-2
log p-value:-6.599e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif3.70%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.0 +/- 0.0bp
Average Position of motif in Background178.5 +/- 2.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFYA/MA0060.3/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CGCCGATC---
AACCAATCAGA
A G T C A C T G A G T C A G T C A C T G C G T A A C G T A G T C A C G T A C G T A C G T
T C G A C T G A A G T C G A T C G C T A T C G A G A C T T A G C T C G A T A C G T G C A

PB0113.1_E2F3_2/Jaspar

Match Rank:2
Score:0.61
Offset:-8
Orientation:reverse strand
Alignment:--------CGCCGATC-
NNNNTTGGCGCCGANNN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C A G T C A C T G C G T A A C G T A G T C A C G T
T A C G T A G C A C G T G A C T A C G T G C A T C T A G A T C G G T A C A C T G A T G C A G T C C T A G G C T A C T A G A T G C C A G T

NFYC/MA1644.1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CGCCGATC---
AGCCAATCAGA
A G T C A C T G A G T C A G T C A C T G C G T A A C G T A G T C A C G T A C G T A C G T
T C G A C T A G A G T C G T A C G C T A T C G A G A C T T A G C T C G A T A C G T G C A

PB0164.1_Smad3_2/Jaspar

Match Rank:4
Score:0.61
Offset:-7
Orientation:forward strand
Alignment:-------CGCCGATC--
TACGCCCCGCCACTCTG
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C A G T C A C T G C G T A A C G T A G T C A C G T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

PB0112.1_E2F2_2/Jaspar

Match Rank:5
Score:0.60
Offset:-8
Orientation:reverse strand
Alignment:--------CGCCGATC-
NNNNTTGGCGCCGANNN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C A G T C A C T G C G T A A C G T A G T C A C G T
T A G C T G A C A G C T A G C T C A G T G A C T C T A G A T C G G T A C A C T G T A G C G A T C C T A G G C T A T C G A A T C G C A T G

NFY(CCAAT)/Promoter/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CGCCGATC--
AGCCAATCGG
A G T C A C T G A G T C A G T C A C T G C G T A A C G T A G T C A C G T A C G T
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

POL006.1_BREu/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CGCCGATC
AGCGCGCC----
A C G T A C G T A C G T A C G T A G T C A C T G A G T C A G T C A C T G C G T A A C G T A G T C
T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T A C G T A C G T

SP9/MA1564.1/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CGCCGATC
GCCACGCCCCCC
A C G T A C G T A C G T A C G T A G T C A C T G A G T C A G T C A C T G C G T A A C G T A G T C
T C A G G T A C G T A C G T C A A T G C T C A G G T A C A G T C G A T C G T A C A G T C G A T C

E2F1/MA0024.3/Jaspar

Match Rank:9
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----CGCCGATC
TTTGGCGCCAAA-
A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C A G T C A C T G C G T A A C G T A G T C
G C A T C G A T C A G T T C A G A T C G A T G C C T A G A T G C A T G C G C T A G C T A C G T A A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:10
Score:0.54
Offset:-7
Orientation:reverse strand
Alignment:-------CGCCGATC
NNGGCCACGCCTTTN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C A G T C A C T G C G T A A C G T A G T C
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G