| p-value: | 1e-10 |
| log p-value: | -2.449e+01 |
| Information Content per bp: | 1.838 |
| Number of Target Sequences with motif | 22.0 |
| Percentage of Target Sequences with motif | 1.17% |
| Number of Background Sequences with motif | 88.7 |
| Percentage of Background Sequences with motif | 0.19% |
| Average Position of motif in Targets | 82.8 +/- 44.0bp |
| Average Position of motif in Background | 90.7 +/- 61.7bp |
| Strand Bias (log2 ratio + to - strand density) | -0.2 |
| Multiplicity (# of sites on avg that occur together) | 1.27 |
| Motif File: | file (matrix) reverse opposite |
| SVG Files for Logos: | forward logo reverse opposite |
PH0040.1_Hmbox1/Jaspar
| Match Rank: | 1 |
| Score: | 0.65 |
| Offset: | -3 |
| Orientation: | forward strand |
| Alignment: | ---AACTAGGTAC---- GAAAACTAGTTAACATC |
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HMBOX1/MA0895.1/Jaspar
| Match Rank: | 2 |
| Score: | 0.63 |
| Offset: | 1 |
| Orientation: | forward strand |
| Alignment: | AACTAGGTAC- -ACTAGTTAAC |
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RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer
| Match Rank: | 3 |
| Score: | 0.62 |
| Offset: | -1 |
| Orientation: | forward strand |
| Alignment: | -AACTAGGTAC- WAABTAGGTCAV |
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|
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer
| Match Rank: | 4 |
| Score: | 0.62 |
| Offset: | 0 |
| Orientation: | forward strand |
| Alignment: | AACTAGGTAC AAYTAGGTCA |
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|
|
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer
| Match Rank: | 5 |
| Score: | 0.62 |
| Offset: | 0 |
| Orientation: | forward strand |
| Alignment: | AACTAGGTAC AAYTAGGTCA |
|
|
|
RORA(var.2)/MA0072.1/Jaspar
| Match Rank: | 6 |
| Score: | 0.62 |
| Offset: | -3 |
| Orientation: | forward strand |
| Alignment: | ---AACTAGGTAC- TATAAGTAGGTCAA |
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|
|
PB0159.1_Rfx4_2/Jaspar
| Match Rank: | 7 |
| Score: | 0.61 |
| Offset: | -2 |
| Orientation: | forward strand |
| Alignment: | --AACTAGGTAC--- TACCCTAGTTACCGA |
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|
PB0152.1_Nkx3-1_2/Jaspar
| Match Rank: | 8 |
| Score: | 0.60 |
| Offset: | -1 |
| Orientation: | forward strand |
| Alignment: | -AACTAGGTAC------ ACTCCAAGTACTTGGAA |
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|
RORC/MA1151.1/Jaspar
| Match Rank: | 9 |
| Score: | 0.59 |
| Offset: | -2 |
| Orientation: | forward strand |
| Alignment: | --AACTAGGTAC ATAAGTAGGTCA |
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|
|
PH0117.1_Nkx3-1/Jaspar
| Match Rank: | 10 |
| Score: | 0.58 |
| Offset: | -1 |
| Orientation: | reverse strand |
| Alignment: | -AACTAGGTAC------ NATTTAAGTACTTANNA |
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