Information for 1-AGCAAGVAAGCT (Motif 1)

C T G A A T C G A G T C C G T A C G T A C T A G T A C G C G T A C T G A A T C G A T G C A C G T
Reverse Opposite:
C G T A A T C G A T G C A G C T A C G T A G T C A G T C C G A T A C G T A C T G A T G C A G C T
p-value:1e-7
log p-value:-1.818e+01
Information Content per bp:1.760
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif258.8
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets47.8 +/- 32.5bp
Average Position of motif in Background103.0 +/- 65.1bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.2/Jaspar

Match Rank:1
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGCAAGVAAGCT
AAGCAATAAAAA-
A C G T C T G A A T C G A G T C C G T A C G T A C T A G T A C G C G T A C T G A A T C G A T G C A C G T
C T G A C G T A C T A G G A T C G T C A C T G A A G C T C G T A C G T A G C T A C G T A G C T A A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:2
Score:0.56
Offset:6
Orientation:forward strand
Alignment:AGCAAGVAAGCT-
------CAAGCTT
C T G A A T C G A G T C C G T A C G T A C T A G T A C G C G T A C T G A A T C G A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:3
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGCAAGVAAGCT
TBGCACGCAA---
A C G T C T G A A T C G A G T C C G T A C G T A C T A G T A C G C G T A C T G A A T C G A T G C A C G T
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGCAAGVAAGCT
RGCAATNAAA--
C T G A A T C G A G T C C G T A C G T A C T A G T A C G C G T A C T G A A T C G A T G C A C G T
C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:5
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---AGCAAGVAAGCT-
CGAAGCACACAAAATA
A C G T A C G T A C G T C T G A A T C G A G T C C G T A C G T A C T A G T A C G C G T A C T G A A T C G A T G C A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Dux/MA0611.1/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AGCAAGVAAGCT
-CCAATCAA---
C T G A A T C G A G T C C G T A C G T A C T A G T A C G C G T A C T G A A T C G A T G C A C G T
A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T

HOXD13/MA0909.2/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AGCAAGVAAGCT
CCCAATAAAAC-
C T G A A T C G A G T C C G T A C G T A C T A G T A C G C G T A C T G A A T C G A T G C A C G T
T A G C T A G C A G T C G T C A C T G A C G A T C G T A C T G A G T C A T G C A T G A C A C G T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:8
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:AGCAAGVAAGCT
AGAAACGAAAGT
C T G A A T C G A G T C C G T A C G T A C T A G T A C G C G T A C T G A A T C G A T G C A C G T
T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:9
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--AGCAAGVAAGCT
WAAGTAAAYA----
A C G T A C G T C T G A A T C G A G T C C G T A C G T A C T A G T A C G C G T A C T G A A T C G A T G C A C G T
G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A A C G T A C G T A C G T A C G T

HOXA13/MA0650.2/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:AGCAAGVAAGCT
CCCAATAAAAC-
C T G A A T C G A G T C C G T A C G T A C T A G T A C G C G T A C T G A A T C G A T G C A C G T
T G A C T A G C A G T C G T C A C G T A A C G T C T G A C T G A C G T A G T C A G T A C A C G T