Information for 2-CATAGTCG (Motif 37)

A G T C C G T A A C G T C G T A A C T G A C G T A G T C A C T G
Reverse Opposite:
A G T C A C T G C G T A A G T C A C G T C G T A A C G T A C T G
p-value:1e-2
log p-value:-5.938e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif48.1
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets65.0 +/- 0.0bp
Average Position of motif in Background110.6 +/- 81.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17/MA0078.1/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CATAGTCG
CTCATTGTC-
A C G T A C G T A G T C C G T A A C G T C G T A A C T G A C G T A G T C A C T G
G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T

ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer

Match Rank:2
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CATAGTCG----
GCACAYAGTAGGKCY
A C G T A C G T A C G T A G T C C G T A A C G T C G T A A C T G A C G T A G T C A C T G A C G T A C G T A C G T A C G T
C T A G G A T C T C G A A T G C T C G A A G C T C T G A A C T G A C G T C T G A A C T G A C T G A C G T A G T C G A T C

HNF4G/MA0484.2/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CATAGTCG---
TCCAAAGTCCAGA
A C G T A C G T A G T C C G T A A C G T C G T A A C T G A C G T A G T C A C T G A C G T A C G T A C G T
C A G T A G T C G A T C T C G A T C G A C T G A A C T G C A G T G A T C G A T C C G T A T C A G C T G A

HNF4A/MA0114.4/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CATAGTCG---
TCCAAAGTCCAAA
A C G T A C G T A G T C C G T A A C G T C G T A A C T G A C G T A G T C A C T G A C G T A C G T A C G T
C A G T G A T C G A T C T G C A T C G A C T G A A C T G C A G T G A T C G A T C C G T A C T G A C T G A

ZKSCAN1/MA1585.1/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CATAGTCG---
-ATAGTAGGTG
A G T C C G T A A C G T C G T A A C T G A C G T A G T C A C T G A C G T A C G T A C G T
A C G T T C G A A G C T T G C A C T A G A C G T G T C A A T C G C A T G A G C T T A C G

SOX18/MA1563.1/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CATAGTCG
GCATTGTN-
A C G T A G T C C G T A A C G T C G T A A C T G A C G T A G T C A C T G
A T C G A G T C C T G A A C G T A G C T A C T G G A C T A T C G A C G T

SOX13/MA1120.1/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CATAGTCG
NNCCATTGTNN
A C G T A C G T A C G T A G T C C G T A A C G T C G T A A C T G A C G T A G T C A C T G
C G A T A C T G A G T C G A T C C G T A G A C T C G A T T C A G G A C T A G C T G A C T

SOX2/MA0143.4/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CATAGTCG
NNCCATTGTNN
A C G T A C G T A C G T A G T C C G T A A C G T C G T A A C T G A C G T A G T C A C T G
C G A T G C A T G A T C G A T C G C T A A G C T C G A T C T A G C G A T G C A T G C A T

Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CATAGTCG---
CCATTGTTYYBB
A C G T A G T C C G T A A C G T C G T A A C T G A C G T A G T C A C T G A C G T A C G T A C G T
A T G C G A T C C G T A A C G T A C G T A C T G A C G T A G C T A G C T A G T C A T C G A C T G

PB0136.1_IRC900814_2/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CATAGTCG-----
ATGGAAAGTCGTAAAA
A C G T A C G T A C G T A G T C C G T A A C G T C G T A A C T G A C G T A G T C A C T G A C G T A C G T A C G T A C G T A C G T
C T G A A G C T A C T G C T A G C T G A T C G A G T C A A C T G G A C T A G T C C A T G A C G T C T G A C G T A T C G A G C T A