Information for 18-AATTTATAGAGC (Motif 18)

C G T A C G T A A C G T A C G T A C G T C G T A A C G T C G T A A C T G C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T A G T C A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C G T
p-value:1e-5
log p-value:-1.189e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets124.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEF2D/MA0773.1/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AATTTATAGAGC
TCTATTTATAGN--
A C G T A C G T C G T A C G T A A C G T A C G T A C G T C G T A A C G T C G T A A C T G C G T A A C T G A G T C
C A G T A G T C A G C T C G T A C G A T G C A T C G A T G C T A C A G T C T G A C T A G G A C T A C G T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------AATTTATAGAGC
NNNNNNCTTTTATAN---
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T C G T A A C G T C G T A A C T G C G T A A C T G A G T C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T

TBP/MA0108.2/Jaspar

Match Rank:3
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------AATTTATAGAGC
NNNNNNCTTTTATAN---
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T C G T A A C G T C G T A A C T G C G T A A C T G A G T C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T

MEF2B/MA0660.1/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AATTTATAGAGC
GCTATTTATAGC--
A C G T A C G T C G T A C G T A A C G T A C G T A C G T C G T A A C G T C G T A A C T G C G T A A C T G A G T C
C A T G A G T C C A G T C G T A C G A T C G A T G C A T C G T A C G A T C T G A C A T G G A T C A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AATTTATAGAGC
DGWTTTATGRCN-
A C G T C G T A C G T A A C G T A C G T A C G T C G T A A C G T C G T A A C T G C G T A A C T G A G T C
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T

PH0063.1_Hoxb8/Jaspar

Match Rank:6
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------AATTTATAGAGC
ACCGGCAATTAATAAA--
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T C G T A A C G T C G T A A C T G C G T A A C T G A G T C
G C T A T A G C A G T C C A T G C T A G G A T C G T C A C G T A C G A T G C A T C G T A G C T A G A C T G T C A C T G A C G T A A C G T A C G T

PB0197.1_Zfp105_2/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AATTTATAGAGC---
NAAANTTATTGAANCAN
A C G T A C G T C G T A C G T A A C G T A C G T A C G T C G T A A C G T C G T A A C T G C G T A A C T G A G T C A C G T A C G T A C G T
G A T C G T C A T C G A G T C A T C G A C G A T A G C T T C G A A C G T A C G T A C T G T C G A T G C A A G T C G T A C T C G A G A C T

PH0078.1_Hoxd13/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---AATTTATAGAGC-
NNANTTTTATTGGNNN
A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T C G T A A C G T C G T A A C T G C G T A A C T G A G T C A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AATTTATAGAGC
TGATTTATGGCC-
A C G T C G T A C G T A A C G T A C G T A C G T C G T A A C G T C G T A A C T G C G T A A C T G A G T C
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:10
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----AATTTATAGAGC
AAATGATTTATGGCT-
A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T C G T A A C G T C G T A A C T G C G T A A C T G A G T C
C T G A C G T A C G T A C G A T C T A G C G T A C G A T C G A T C A G T T C G A A G C T C A T G C T A G A G T C G A C T A C G T