Information for 4-GCCTGTCTCG (Motif 8)

A C T G A G T C A G T C A C G T A C T G A C G T A G T C A C G T A G T C A C T G
Reverse Opposite:
A G T C A C T G C G T A A C T G C G T A A G T C C G T A C T A G A C T G A G T C
p-value:1e-11
log p-value:-2.594e+01
Information Content per bp:1.966
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets94.8 +/- 32.3bp
Average Position of motif in Background96.0 +/- 18.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.70
Offset:2
Orientation:forward strand
Alignment:GCCTGTCTCG
--CTGTCTGG
A C T G A G T C A G T C A C G T A C T G A C G T A G T C A C G T A G T C A C T G
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Smad4/MA1153.1/Jaspar

Match Rank:2
Score:0.69
Offset:3
Orientation:forward strand
Alignment:GCCTGTCTCG-
---TGTCTAGA
A C T G A G T C A G T C A C G T A C T G A C G T A G T C A C G T A G T C A C T G A C G T
A C G T A C G T A C G T G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GCCTGTCTCG-----
NNTNNTGTCTGGNNTNG
A C G T A C G T A C T G A G T C A G T C A C G T A C T G A C G T A G T C A C G T A G T C A C T G A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GCCTGTCTCG
VBSYGTCTGG
A C T G A G T C A G T C A C G T A C T G A C G T A G T C A C G T A G T C A C T G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

PRDM4/MA1647.1/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCCTGTCTCG-
GTCTGTTTCTA
A C T G A G T C A G T C A C G T A C T G A C G T A G T C A C G T A G T C A C T G A C G T
C T A G C A G T T A G C C G A T T C A G G C A T A G C T G C A T G T A C G C A T G C T A

PB0138.1_Irf4_2/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCCTGTCTCG-----
AGTATTCTCGGTTGC
A C T G A G T C A G T C A C G T A C T G A C G T A G T C A C G T A G T C A C T G A C G T A C G T A C G T A C G T A C G T
T C A G T A C G A G C T G C T A G A C T C A G T G A T C A G C T G A T C T C A G T C A G C G A T G A C T C A T G A T G C

PB0140.1_Irf6_2/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCCTGTCTCG-----
ACCACTCTCGGTCAC
A C T G A G T C A G T C A C G T A C T G A C G T A G T C A C G T A G T C A C T G A C G T A C G T A C G T A C G T A C G T
T G C A A G T C A G T C G C T A G T A C C A G T A T G C A G C T A G T C C T A G T C A G C A G T G A T C C T G A T A G C

MEIS3/MA0775.1/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCCTGTCTCG
-CCTGTCAA-
A C T G A G T C A G T C A C G T A C T G A C G T A G T C A C G T A G T C A C T G
A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T

SMAD5/MA1557.1/Jaspar

Match Rank:9
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GCCTGTCTCG---
---TGTCTAGACA
A C T G A G T C A G T C A C G T A C T G A C G T A G T C A C G T A G T C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C T A G C A G T A T G C A C G T T G C A A C T G G T C A A G T C C T G A

PRDM1/MA0508.3/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCCTGTCTCG-
TTCTTTCTCTT
A C T G A G T C A G T C A C G T A C T G A C G T A G T C A C G T A G T C A C T G A C G T
G A C T G C A T G T A C C G A T G C A T C G A T G T A C C G A T G T A C G A C T G A C T