Information for 12-GAGCAGACTG (Motif 25)

A C T G G T C A A C T G A G T C C G T A A C T G C G T A A G T C A C G T A C T G
Reverse Opposite:
A G T C C G T A A C T G C G A T A G T C A C G T A C T G A G T C A C G T A G T C
p-value:1e-4
log p-value:-1.084e+01
Information Content per bp:1.950
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif47.0
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets33.1 +/- 15.6bp
Average Position of motif in Background93.6 +/- 58.7bp
Strand Bias (log2 ratio + to - strand density)3.2
Multiplicity (# of sites on avg that occur together)1.43
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:GAGCAGACTG
--CCAGACAG
A C T G G T C A A C T G A G T C C G T A A C T G C G T A A G T C A C G T A C T G
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:GAGCAGACTG--
--CCAGACRSVB
A C T G G T C A A C T G A G T C C G T A A C T G C G T A A G T C A C G T A C T G A C G T A C G T
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GAGCAGACTG
--BCAGACWA
A C T G G T C A A C T G A G T C C G T A A C T G C G T A A G T C A C G T A C T G
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

ZNF317/MA1593.1/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GAGCAGACTG
TAACAGCAGACT-
A C G T A C G T A C G T A C T G G T C A A C T G A G T C C G T A A C T G C G T A A G T C A C G T A C T G
C G A T T C G A C G T A T G A C C G T A C T A G G T A C C G T A C T A G G C T A G A T C G C A T A C G T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GAGCAGACTG---
VAGRACAKNCTGTBC
A C G T A C G T A C T G G T C A A C T G A G T C C G T A A C T G C G T A A G T C A C G T A C T G A C G T A C G T A C G T
T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GAGCAGACTG----
NAGAACAGNCTGTNCT
A C G T A C G T A C T G G T C A A C T G A G T C C G T A A C T G C G T A A G T C A C G T A C T G A C G T A C G T A C G T A C G T
T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T

ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GAGCAGACTG--
RHHCAGAGAGGB
A C T G G T C A A C T G A G T C C G T A A C T G C G T A A G T C A C G T A C T G A C G T A C G T
T C A G G T C A G C T A A G T C C G T A A T C G T C G A T C A G C G T A A C T G A C T G A C T G

ZSCAN29/MA1602.1/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GAGCAGACTG
NCNGTGTAGACG-
A C G T A C G T A C G T A C T G G T C A A C T G A G T C C G T A A C T G C G T A A G T C A C G T A C T G
A T G C G A T C A G T C T A C G A G C T C T A G C A G T C T G A A C T G T C G A A G T C T C A G A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GAGCAGACTG-
-TGCTGACTCA
A C T G G T C A A C T G A G T C C G T A A C T G C G T A A G T C A C G T A C T G A C G T
A C G T G A C T C T A G G A T C C A G T A C T G C T G A A T G C G C A T A T G C C T G A

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GAGCAGACTG---
AAGAACATWHTGTTC
A C G T A C G T A C T G G T C A A C T G A G T C C G T A A C T G C G T A A G T C A C G T A C T G A C G T A C G T A C G T
C G T A C T G A C T A G C G T A C G T A A G T C C G T A C A G T G C A T G T C A C G A T A C T G A C G T G C A T G A T C