Information for 8-ATTCAGGTCAMA (Motif 10)

C G T A G C A T G A C T G A T C G C T A C A T G A C T G C G A T G T A C G T C A G T C A G C T A
Reverse Opposite:
C G A T C A G T C A G T A C T G C G T A T G A C G T A C C G A T C T A G C T G A C G T A C G A T
p-value:1e-10
log p-value:-2.379e+01
Information Content per bp:1.666
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif4.66%
Number of Background Sequences with motif577.2
Percentage of Background Sequences with motif1.20%
Average Position of motif in Targets92.6 +/- 52.4bp
Average Position of motif in Background99.6 +/- 57.3bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORB/MA1150.1/Jaspar

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:ATTCAGGTCAMA
AATTAGGTCAC-
C G T A G C A T G A C T G A T C G C T A C A T G A C T G C G A T G T A C G T C A G T C A G C T A
C G T A G C T A C G A T A C G T C T G A A C T G C T A G A G C T G A T C C T G A G A T C A C G T

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:2
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-ATTCAGGTCAMA--
AAWCTAGGTCARDNN
A C G T C G T A G C A T G A C T G A T C G C T A C A T G A C T G C G A T G T A C G T C A G T C A G C T A A C G T A C G T
C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:3
Score:0.71
Offset:0
Orientation:forward strand
Alignment:ATTCAGGTCAMA
AAYTAGGTCA--
C G T A G C A T G A C T G A T C G C T A C A T G A C T G C G A T G T A C G T C A G T C A G C T A
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.71
Offset:0
Orientation:forward strand
Alignment:ATTCAGGTCAMA
AAYTAGGTCA--
C G T A G C A T G A C T G A T C G C T A C A T G A C T G C G A T G T A C G T C A G T C A G C T A
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.70
Offset:0
Orientation:forward strand
Alignment:ATTCAGGTCAMA
ATCAAGGTCA--
C G T A G C A T G A C T G A T C G C T A C A T G A C T G C G A T G T A C G T C A G T C A G C T A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:6
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---ATTCAGGTCAMA
TATAAGTAGGTCAA-
A C G T A C G T A C G T C G T A G C A T G A C T G A T C G C T A C A T G A C T G C G A T G T A C G T C A G T C A G C T A
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:7
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-ATTCAGGTCAMA
WAABTAGGTCAV-
A C G T C G T A G C A T G A C T G A T C G C T A C A T G A C T G C G A T G T A C G T C A G T C A G C T A
C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G A C G T

RORC/MA1151.1/Jaspar

Match Rank:8
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--ATTCAGGTCAMA
ATAAGTAGGTCA--
A C G T A C G T C G T A G C A T G A C T G A T C G C T A C A T G A C T G C G A T G T A C G T C A G T C A G C T A
C T G A C G A T G C T A C G T A A C T G A C G T T C G A C A T G C T A G A C G T A G T C C T G A A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:9
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--ATTCAGGTCAMA
ACATTCATGACACG
A C G T A C G T C G T A G C A T G A C T G A T C G C T A C A T G A C T G C G A T G T A C G T C A G T C A G C T A
C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.62
Offset:2
Orientation:forward strand
Alignment:ATTCAGGTCAMA
--TRAGGTCA--
C G T A G C A T G A C T G A T C G C T A C A T G A C T G C G A T G T A C G T C A G T C A G C T A
A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T