Information for 6-YCYATRMAKRGA (Motif 6)

A G T C A G T C A G C T C G T A A C G T C T A G G T C A C G T A A C T G C T A G A C T G C G T A
Reverse Opposite:
A C G T A G T C A G T C G T A C A C G T A C G T A G T C C G T A A C G T C T G A A C T G C T A G
p-value:1e-4
log p-value:-1.011e+01
Information Content per bp:1.817
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif28.57%
Number of Background Sequences with motif143.3
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets94.3 +/- 60.7bp
Average Position of motif in Background106.3 +/- 76.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0008.1_MADS_class/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:YCYATRMAKRGA
-CCATATATGG-
A G T C A G T C A G C T C G T A A C G T C T A G G T C A C G T A A C T G C T A G A C T G C G T A
A C G T G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G A C G T

MEF2D/MA0773.1/Jaspar

Match Rank:2
Score:0.70
Offset:0
Orientation:forward strand
Alignment:YCYATRMAKRGA
ACTATAAATAGA
A G T C A G T C A G C T C G T A A C G T C T A G G T C A C G T A A C T G C T A G A C T G C G T A
C T G A G A T C G A C T G T C A C G A T G C T A C G T A G C T A A C G T C T G A T C A G G T C A

MEF2B/MA0660.1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:YCYATRMAKRGA
GCTATAAATAGC
A G T C A G T C A G C T C G T A A C G T C T A G G T C A C G T A A C T G C T A G A C T G C G T A
C T A G G T A C A G C T C G T A G C A T C G T A G C T A C G T A A C G T G C T A T C A G G T A C

PB0078.1_Srf_1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-YCYATRMAKRGA-
TNCCATATATGGNA
A C G T A G T C A G T C A G C T C G T A A C G T C T A G G T C A C G T A A C T G C T A G A C T G C G T A A C G T
C A G T C G A T G T A C A G T C C G T A C G A T C G T A G C A T C G T A C G A T C T A G C A T G C G T A C G T A

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:YCYATRMAKRGA
KCCAAAAATAGC
A G T C A G T C A G C T C G T A A C G T C T A G G T C A C G T A A C T G C T A G A C T G C G T A
A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C

TATA-Box(TBP)/Promoter/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-YCYATRMAKRGA
GNCTATAAAAGG-
A C G T A G T C A G T C A G C T C G T A A C G T C T A G G T C A C G T A A C T G C T A G A C T G C G T A
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:YCYATRMAKRGA----
-GTATAAAAGGCGGGG
A G T C A G T C A G C T C G T A A C G T C T A G G T C A C G T A A C T G C T A G A C T G C G T A A C G T A C G T A C G T A C G T
A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:YCYATRMAKRGA----
-GTATAAAAGGCGGGG
A G T C A G T C A G C T C G T A A C G T C T A G G T C A C G T A A C T G C T A G A C T G C G T A A C G T A C G T A C G T A C G T
A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:YCYATRMAKRGA-
-CCATATATGGNA
A G T C A G T C A G C T C G T A A C G T C T A G G T C A C G T A A C T G C T A G A C T G C G T A A C G T
A C G T A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:YCYATRMAKRGA
-CCAAAAATAG-
A G T C A G T C A G C T C G T A A C G T C T A G G T C A C G T A A C T G C T A G A C T G C G T A
A C G T G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T