Information for 5-GTTGGCTG (Motif 38)

A C T G A C G T A C G T A C T G C T A G A T G C A C G T A C T G
Reverse Opposite:
A G T C C G T A A T C G A G T C A G T C C G T A C G T A A G T C
p-value:1e-2
log p-value:-5.929e+00
Information Content per bp:1.927
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif70.00%
Number of Background Sequences with motif21698.5
Percentage of Background Sequences with motif23.91%
Average Position of motif in Targets117.2 +/- 40.4bp
Average Position of motif in Background101.1 +/- 89.6bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.43
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.72
Offset:1
Orientation:forward strand
Alignment:GTTGGCTG-
-TWGTCTGV
A C T G A C G T A C G T A C T G C T A G A T G C A C G T A C T G A C G T
A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GTTGGCTG-
NTTGGCANN
A C T G A C G T A C G T A C T G C T A G A T G C A C G T A C T G A C G T
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NKX2-5/MA0063.2/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GTTGGCTG--
NNTTGAGTGNN
A C G T A C T G A C G T A C G T A C T G C T A G A T G C A C G T A C T G A C G T A C G T
C G A T A G C T C G A T G C A T C T A G C G T A C T A G G A C T C T A G A C T G A G C T

NKX2-2/MA1645.1/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GTTGGCTG----
NNNTTGAGTGGNNN
A C G T A C G T A C T G A C G T A C G T A C T G C T A G A T G C A C G T A C T G A C G T A C G T A C G T A C G T
C G A T C G A T A G T C A G C T C A G T T A C G C G T A C A T G C G A T C T A G A C T G G C A T C G A T C T G A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:5
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------GTTGGCTG-
GTCATGCHTGRCTGS
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C G T A C T G C T A G A T G C A C G T A C T G A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

MYB/MA0100.3/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----GTTGGCTG
NNCAGTTGNN--
A C G T A C G T A C G T A C G T A C T G A C G T A C G T A C T G C T A G A T G C A C G T A C T G
C A T G C T G A A G T C T G C A A C T G C G A T G A C T T C A G T C A G C A G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GTTGGCTG--
TGATTGGCTANN
A C G T A C G T A C T G A C G T A C G T A C T G C T A G A T G C A C G T A C T G A C G T A C G T
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GTTGGCTG----
GTGGCGTGACNG
A C T G A C G T A C G T A C T G C T A G A T G C A C G T A C T G A C G T A C G T A C G T A C G T
T C A G A C G T C A T G A C T G A T G C A T C G A C G T A T C G C T G A A G T C G A T C C A T G

SREBF1/MA0595.1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GTTGGCTG--
GTGGGGTGAT
A C T G A C G T A C G T A C T G C T A G A T G C A C G T A C T G A C G T A C G T
T C A G A C G T A T C G C T A G A T C G A T C G A C G T A C T G C G T A A G C T

NFY(CCAAT)/Promoter/Homer

Match Rank:10
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GTTGGCTG
CCGATTGGCT-
A C G T A C G T A C G T A C T G A C G T A C G T A C T G C T A G A T G C A C G T A C T G
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T