Information for 2-GGAGCCCATCCA (Motif 3)

A C T G A C T G C G T A A C T G G T A C A G T C G T A C C G T A A C G T G T A C G T A C C G T A
Reverse Opposite:
C G A T A C T G A C T G C G T A A C G T A C T G C T A G A C T G G T A C A C G T A G T C A G T C
p-value:1e-10
log p-value:-2.525e+01
Information Content per bp:1.835
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets114.3 +/- 35.8bp
Average Position of motif in Background79.4 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCCCATCCA
CGGAGC-------
A C G T A C T G A C T G C G T A A C T G G T A C A G T C G T A C C G T A A C G T G T A C G T A C C G T A
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF449/MA1656.1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGAGCCCATCCA-
CCAAGCCCAACCAG
A C G T A C T G A C T G C G T A A C T G G T A C A G T C G T A C C G T A A C G T G T A C G T A C C G T A A C G T
G T A C T G A C T G C A G C T A C T A G T A G C G T A C G T A C G C T A C T G A T G A C G T A C G T C A T A C G

PH0026.1_Duxbl/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GGAGCCCATCCA-----
CGACCCAATCAACGGTG
A C T G A C T G C G T A A C T G G T A C A G T C G T A C C G T A A C G T G T A C G T A C C G T A A C G T A C G T A C G T A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

DPRX/MA1480.1/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GGAGCCCATCCA
--AGATAATCCC
A C T G A C T G C G T A A C T G G T A C A G T C G T A C C G T A A C G T G T A C G T A C C G T A
A C G T A C G T T C G A T A C G G T C A A C G T T G C A C G T A A C G T G T A C A G T C A T G C

Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer

Match Rank:5
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GGAGCCCATCCA--
--AGACCACCCASR
A C T G A C T G C G T A A C T G G T A C A G T C G T A C C G T A A C G T G T A C G T A C C G T A A C G T A C G T
A C G T A C G T C T G A A C T G T C G A T G A C G A T C G C T A T A G C T G A C G T A C C G T A T A G C T C A G

E2F1/MA0024.3/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GGAGCCCATCCA
TTTGGCGCCAAA---
A C G T A C G T A C G T A C T G A C T G C G T A A C T G G T A C A G T C G T A C C G T A A C G T G T A C G T A C C G T A
G C A T C G A T C G A T T A C G A T C G A G T C A T C G T A G C A G T C G T C A G C T A C G T A A C G T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:7
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GGAGCCCATCCA
--AGCCAATCGG
A C T G A C T G C G T A A C T G G T A C A G T C G T A C C G T A A C G T G T A C G T A C C G T A
A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

PLAGL2/MA1548.1/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GGAGCCCATCCA
NGGGGGCCCN----
A C G T A C G T A C T G A C T G C G T A A C T G G T A C A G T C G T A C C G T A A C G T G T A C G T A C C G T A
C G T A C T A G C T A G A C T G A C T G A T C G A T G C A G T C G T A C C G T A A C G T A C G T A C G T A C G T

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GGAGCCCATCCA-
---RGCAATNAAA
A C T G A C T G C G T A A C T G G T A C A G T C G T A C C G T A A C G T G T A C G T A C C G T A A C G T
A C G T A C G T A C G T C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A

POL004.1_CCAAT-box/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GGAGCCCATCCA
ACTAGCCAATCA-
A C G T A C T G A C T G C G T A A C T G G T A C A G T C G T A C C G T A A C G T G T A C G T A C C G T A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T