Information for 2-AGATTAGCATTG (Motif 2)

C G T A A C T G C G T A A C G T A C G T C G T A A C T G A G T C C G T A A C G T A C G T A C T G
Reverse Opposite:
A G T C C G T A C G T A A C G T A C T G A G T C A C G T C G T A C G T A A C G T A G T C A C G T
p-value:1e-4
log p-value:-1.023e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets185.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GATA1/MA0035.4/Jaspar

Match Rank:1
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--AGATTAGCATTG
NNAGATTAGAN---
A C G T A C G T C G T A A C T G C G T A A C G T A C G T C G T A A C T G A G T C C G T A A C G T A C G T A C T G
C G T A G C A T C G T A C A T G C G T A C G A T G C A T G C T A C A T G C G T A G C T A A C G T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-AGATTAGCATTG
BTVATTWGCATA-
A C G T C G T A A C T G C G T A A C G T A C G T C G T A A C T G A G T C C G T A A C G T A C G T A C T G
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-AGATTAGCATTG
CTCATTTGCATW-
A C G T C G T A A C T G C G T A A C G T A C G T C G T A A C T G A G T C C G T A A C G T A C G T A C T G
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:4
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:AGATTAGCATTG
--ATTTGCATA-
C G T A A C T G C G T A A C G T A C G T C G T A A C T G A G T C C G T A A C G T A C G T A C T G
A C G T A C G T G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:5
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:AGATTAGCATTG
--ATTTGCATA-
C G T A A C T G C G T A A C G T A C G T C G T A A C T G A G T C C G T A A C G T A C G T A C T G
A C G T A C G T G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:AGATTAGCATTG
GGATTAGC----
C G T A A C T G C G T A A C G T A C G T C G T A A C T G A G T C C G T A A C G T A C G T A C T G
T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T A C G T A C G T

Sox1/MA0870.1/Jaspar

Match Rank:7
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AGATTAGCATTG--
AACAATAACATTGTT
A C G T C G T A A C T G C G T A A C G T A C G T C G T A A C T G A G T C C G T A A C G T A C G T A C T G A C G T A C G T
T G C A G C T A A G T C G T C A G T C A C G A T C G T A T C G A A T G C C G T A A C G T A G C T A C T G G A C T A G C T

PB0023.1_Gata6_1/Jaspar

Match Rank:8
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----AGATTAGCATTG
TATAGAGATAAGAATTG
A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C G T A C G T C G T A A C T G A G T C C G T A A C G T A C G T A C T G
C G A T G T C A C G A T T G C A C A G T G C T A A C T G C G T A A G C T C G T A C G T A A T C G T G C A C T G A C G A T G C A T T C A G

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.65
Offset:2
Orientation:forward strand
Alignment:AGATTAGCATTG
--ATTTGCATAA
C G T A A C T G C G T A A C G T A C G T C G T A A C T G A G T C C G T A A C G T A C G T A C T G
A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

POU3F3/MA0788.1/Jaspar

Match Rank:10
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGATTAGCATTG-
AAATTAGCATAAT
C G T A A C T G C G T A A C G T A C G T C G T A A C T G A G T C C G T A A C G T A C G T A C T G A C G T
G C T A G C T A C G T A G A C T G C A T C G T A T C A G G T A C T G C A G C A T G C T A G C T A G C A T