Information for 18-AGTTTATGGC (Motif 35)

C G T A A C T G A C G T A C G T A C G T C G T A A C G T A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C C G T A A C G T C G T A C G T A C G T A A G T C A C G T
p-value:1e-3
log p-value:-7.017e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif14.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets147.0 +/- 0.0bp
Average Position of motif in Background84.4 +/- 62.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX1/MA0878.2/Jaspar

Match Rank:1
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:AGTTTATGGC-
GTTTTATGGCC
C G T A A C T G A C G T A C G T A C G T C G T A A C G T A C T G A C T G A G T C A C G T
T C A G C A G T A G C T A C G T A G C T C G T A A C G T A C T G T C A G G A T C G T A C

CDX4/MA1473.1/Jaspar

Match Rank:2
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:AGTTTATGGC-
GTTTTATTGCC
C G T A A C T G A C G T A C G T A C G T C G T A A C G T A C T G A C T G A G T C A C G T
T C A G C A G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G T C G T A C

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.77
Offset:1
Orientation:forward strand
Alignment:AGTTTATGGC-
-TTTTATGGCM
C G T A A C T G A C G T A C G T A C G T C G T A A C G T A C T G A C T G A G T C A C G T
A C G T C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:AGTTTATGGC
NTTTTATGAC
C G T A A C T G A C G T A C G T A C G T C G T A A C G T A C T G A C T G A G T C
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-AGTTTATGGC-
DGWTTTATGRCN
A C G T C G T A A C T G A C G T A C G T A C G T C G T A A C G T A C T G A C T G A G T C A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

PH0013.1_Cdx2/Jaspar

Match Rank:6
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--AGTTTATGGC----
NAATTTTATTACCNNN
A C G T A C G T C G T A A C T G A C G T A C G T A C G T C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

CDX2/MA0465.2/Jaspar

Match Rank:7
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:AGTTTATGGC--
NTTTTATTGCNN
C G T A A C T G A C G T A C G T A C G T C G T A A C G T A C T G A C T G A G T C A C G T A C G T
C G A T G C A T C G A T G C A T G C A T T C G A G A C T C A G T C T A G G A T C G C A T G A C T

HOXD9/MA0913.2/Jaspar

Match Rank:8
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:AGTTTATGGC
NTTTTATTGC
C G T A A C T G A C G T A C G T A C G T C G T A A C G T A C T G A C T G A G T C
C T A G C A G T A C G T C G A T C G A T C G T A A G C T C A G T T C A G A G T C

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:AGTTTATGGC-
-TTTTATGGCB
C G T A A C T G A C G T A C G T A C G T C G T A A C G T A C T G A C T G A G T C A C G T
A C G T G C A T C G A T G C A T G A C T G C T A A G C T C A T G C T A G A T G C A G T C

PH0056.1_Hoxa9/Jaspar

Match Rank:10
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----AGTTTATGGC---
ANTAATTTTATGGCCGN
A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C G T A C G T C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T