Information for 2-AGGBACCATGGT (Motif 2)

C G T A A C T G A C T G A G C T C G T A A T G C A G T C C G T A A C G T A C T G A T C G C G A T
Reverse Opposite:
G C T A A T G C A G T C C G T A A C G T A C T G A T C G A C G T T C G A G T A C G T A C C G A T
p-value:1e-5
log p-value:-1.339e+01
Information Content per bp:1.808
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif22.22%
Number of Background Sequences with motif20.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets152.5 +/- 33.5bp
Average Position of motif in Background92.1 +/- 84.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX2/MA0143.4/Jaspar

Match Rank:1
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:AGGBACCATGGT--
---NNCCATTGTNN
C G T A A C T G A C T G A G C T C G T A A T G C A G T C C G T A A C G T A C T G A T C G C G A T A C G T A C G T
A C G T A C G T A C G T C G A T G C A T G A T C G A T C G C T A A G C T C G A T C T A G C G A T G C A T G C A T

SOX13/MA1120.1/Jaspar

Match Rank:2
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:AGGBACCATGGT--
---NNCCATTGTNN
C G T A A C T G A C T G A G C T C G T A A T G C A G T C C G T A A C G T A C T G A T C G C G A T A C G T A C G T
A C G T A C G T A C G T C G A T A C T G A G T C G A T C C G T A G A C T C G A T T C A G G A C T A G C T G A C T

SOX18/MA1563.1/Jaspar

Match Rank:3
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:AGGBACCATGGT-
-----GCATTGTN
C G T A A C T G A C T G A G C T C G T A A T G C A G T C C G T A A C G T A C T G A T C G C G A T A C G T
A C G T A C G T A C G T A C G T A C G T A T C G A G T C C T G A A C G T A G C T A C T G G A C T A T C G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.59
Offset:5
Orientation:forward strand
Alignment:AGGBACCATGGT---
-----CCATTGTTYB
C G T A A C T G A C T G A G C T C G T A A T G C A G T C C G T A A C G T A C T G A T C G C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer

Match Rank:5
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:AGGBACCATGGT-----
-----CCATTGTTYYBB
C G T A A C T G A C T G A G C T C G T A A T G C A G T C C G T A A C G T A C T G A T C G C G A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G T A A C G T A C G T A C T G A C G T A G C T A G C T A G T C A T C G A C T G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:6
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:AGGBACCATGGT--
----NCCATTGTTY
C G T A A C T G A C T G A G C T C G T A A T G C A G T C C G T A A C G T A C T G A T C G C G A T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

SOX9/MA0077.1/Jaspar

Match Rank:7
Score:0.57
Offset:5
Orientation:forward strand
Alignment:AGGBACCATGGT--
-----CCATTGTTC
C G T A A C T G A C T G A G C T C G T A A T G C A G T C C G T A A C G T A C T G A T C G C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

PB0132.1_Hbp1_2/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGGBACCATGGT-----
TGTTCCCATTGTGTACT
C G T A A C T G A C T G A G C T C G T A A T G C A G T C C G T A A C G T A C T G A T C G C G A T A C G T A C G T A C G T A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGGBACCATGGT--
NGTTGCCATGGCAA
C G T A A C T G A C T G A G C T C G T A A T G C A G T C C G T A A C G T A C T G A T C G C G A T A C G T A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGGBACCATGGT
AGGVNCCTTTGT
C G T A A C T G A C T G A G C T C G T A A T G C A G T C C G T A A C G T A C T G A T C G C G A T
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T