Information for 1-GHATGAAT (Motif 6)

A T C G G A T C C G T A A C G T A C T G T C G A G T C A G A C T
Reverse Opposite:
C T G A C A G T A G C T A G T C C G T A A C G T C T A G T A G C
p-value:1e-5
log p-value:-1.173e+01
Information Content per bp:1.772
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif3744.0
Percentage of Background Sequences with motif6.19%
Average Position of motif in Targets66.8 +/- 44.8bp
Average Position of motif in Background99.6 +/- 77.2bp
Strand Bias (log2 ratio + to - strand density)-10.0
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.84
Offset:-4
Orientation:reverse strand
Alignment:----GHATGAAT--
NNTNTCATGAATGT
A C G T A C G T A C G T A C G T A T C G G A T C C G T A A C G T A C T G T C G A G T C A G A C T A C G T A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

PB0028.1_Hbp1_1/Jaspar

Match Rank:2
Score:0.82
Offset:-5
Orientation:forward strand
Alignment:-----GHATGAAT---
ACTATGAATGAATGAT
A C G T A C G T A C G T A C G T A C G T A T C G G A T C C G T A A C G T A C T G T C G A G T C A G A C T A C G T A C G T A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

PB0170.1_Sox17_2/Jaspar

Match Rank:3
Score:0.81
Offset:-3
Orientation:reverse strand
Alignment:---GHATGAAT------
NTTNTATGAATGTGNNC
A C G T A C G T A C G T A T C G G A T C C G T A A C G T A C T G T C G A G T C A G A C T A C G T A C G T A C G T A C G T A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.75
Offset:2
Orientation:forward strand
Alignment:GHATGAAT----
--ATGAATATTC
A T C G G A T C C G T A A C G T A C T G T C G A G T C A G A C T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

ZNF24/MA1124.1/Jaspar

Match Rank:5
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----GHATGAAT-
GAATGAATGAATG
A C G T A C G T A C G T A C G T A T C G G A T C C G T A A C G T A C T G T C G A G T C A G A C T A C G T
C T A G T C G A C T G A A G C T C T A G C T G A T C G A A G C T C T A G T C G A C T G A A G C T C T A G

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.73
Offset:2
Orientation:forward strand
Alignment:GHATGAAT----
--ATGMATATDC
A T C G G A T C C G T A A C G T A C T G T C G A G T C A G A C T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

FOS/MA0476.1/Jaspar

Match Rank:7
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:GHATGAAT----
-NATGAGTCANN
A T C G G A T C C G T A A C G T A C T G T C G A G T C A G A C T A C G T A C G T A C G T A C G T
A C G T T C G A T C G A A C G T A C T G C G T A T A C G A C G T G T A C C G T A A T G C G T C A

JDP2/MA0655.1/Jaspar

Match Rank:8
Score:0.71
Offset:2
Orientation:forward strand
Alignment:GHATGAAT---
--ATGACTCAT
A T C G G A T C C G T A A C G T A C T G T C G A G T C A G A C T A C G T A C G T A C G T
A C G T A C G T T C G A G A C T A C T G C G T A T A G C C A G T G T A C C G T A G A C T

FOS::JUNB/MA1134.1/Jaspar

Match Rank:9
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GHATGAAT----
NNATGACTCATN
A T C G G A T C C G T A A C G T A C T G T C G A G T C A G A C T A C G T A C G T A C G T A C G T
A C T G C A T G T C G A A C G T A C T G G T C A A T G C C A G T G T A C C G T A A G C T G T A C

FOSL2::JUNB/MA1138.1/Jaspar

Match Rank:10
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GHATGAAT---
-GATGACTCAT
A T C G G A T C C G T A A C G T A C T G T C G A G T C A G A C T A C G T A C G T A C G T
A C G T A C T G T C G A A C G T A C T G C G T A A T G C C A G T G T A C C G T A A G C T