Information for 1-TGCAGAAATCTC (Motif 1)

A C G T A C T G A G T C C G T A A C T G C G T A G T C A C G T A A G C T A G T C A G C T A G T C
Reverse Opposite:
C T A G C T G A A C T G C T G A A C G T A C G T C G A T G T A C A C G T C T A G G T A C G T C A
p-value:1e-9
log p-value:-2.163e+01
Information Content per bp:1.753
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif41.67%
Number of Background Sequences with motif215.6
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets134.4 +/- 44.5bp
Average Position of motif in Background94.7 +/- 78.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TGCAGAAATCTC--
NNCCATAAATCATNN
A C G T A C G T A C T G A G T C C G T A A C T G C G T A G T C A C G T A A G C T A G T C A G C T A G T C A C G T A C G T
C T G A T C A G G A T C G T A C T C G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G C A T G C A T G A C T

PBX2/MA1113.2/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TGCAGAAATCTC-
GTCATAAATCATT
A C G T A C T G A G T C C G T A A C T G C G T A G T C A C G T A A G C T A G T C A G C T A G T C A C G T
T C A G G A C T G T A C C T G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G A C T G C A T

PB0145.1_Mafb_2/Jaspar

Match Rank:3
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TGCAGAAATCTC
CAATTGCAAAAATAT-
A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C T G C G T A G T C A C G T A A G C T A G T C A G C T A G T C
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T A C G T

PB0126.1_Gata5_2/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TGCAGAAATCTC----
NNNCTGATATCTCNNNN
A C G T A C G T A C T G A G T C C G T A A C T G C G T A G T C A C G T A A G C T A G T C A G C T A G T C A C G T A C G T A C G T A C G T
T G C A T G A C C T G A G A T C G C A T C T A G G T C A C A G T G T C A A C G T G T A C C A G T G A T C C A G T T A C G A C G T A G T C

MEIS1(var.2)/MA1639.1/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TGCAGAAATCTC-
GTCATCAATCATT
A C G T A C T G A G T C C G T A A C T G C G T A G T C A C G T A A G C T A G T C A G C T A G T C A C G T
C T A G G A C T G A T C C T G A C A G T G T A C G T C A G C T A G C A T G T A C G C T A G C A T G C A T

PH0138.1_Pitx2/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TGCAGAAATCTC----
GNNNATTAATCCCTNCN
A C G T A C G T A C T G A G T C C G T A A C T G C G T A G T C A C G T A A G C T A G T C A G C T A G T C A C G T A C G T A C G T A C G T
C T A G G C T A G A C T C T A G C T G A G A C T C G A T C G T A C T G A A C G T G A T C A G T C A G T C A G C T G C A T G T A C G T C A

PH0129.1_Otx1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TGCAGAAATCTC----
NNNAATTAATCCCCNCN
A C G T A C G T A C T G A G T C C G T A A C T G C G T A G T C A C G T A A G C T A G T C A G C T A G T C A C G T A C G T A C G T A C G T
T C G A C G A T C G T A C G T A C T G A G A C T C G A T C G T A C G T A A C G T G A T C A G T C A T G C A G T C G C A T G T A C G A C T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGCAGAAATCTC
GGCCATAAATCA-
A C G T A C G T A C T G A G T C C G T A A C T G C G T A G T C A C G T A A G C T A G T C A G C T A G T C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T

PH0037.1_Hdx/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGCAGAAATCTC----
AAGGCGAAATCATCGCA
A C G T A C G T A C T G A G T C C G T A A C T G C G T A G T C A C G T A A G C T A G T C A G C T A G T C A C G T A C G T A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:10
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:TGCAGAAATCTC
----YTAATCCY
A C G T A C T G A G T C C G T A A C T G C G T A G T C A C G T A A G C T A G T C A G C T A G T C
A C G T A C G T A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C