Information for 5-AKRMTTYAATTT (Motif 5)

C G T A C A T G T C A G T G C A A C G T A C G T A G C T C G T A C G T A A G C T A C G T A G C T
Reverse Opposite:
C T G A G T C A C T G A A C G T C G A T T C G A C G T A C G T A A C G T A G T C G T A C A C G T
p-value:1e-5
log p-value:-1.358e+01
Information Content per bp:1.710
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif35.00%
Number of Background Sequences with motif1455.6
Percentage of Background Sequences with motif3.03%
Average Position of motif in Targets88.0 +/- 53.2bp
Average Position of motif in Background97.1 +/- 65.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3a/MA0151.1/Jaspar

Match Rank:1
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:AKRMTTYAATTT
----TTTAAT--
C G T A C A T G T C A G T G C A A C G T A C G T A G C T C G T A C G T A A G C T A C G T A G C T
A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T

MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AKRMTTYAATTT----
-GACTTTTAWTTTGAA
C G T A C A T G T C A G T G C A A C G T A C G T A G C T C G T A C G T A A G C T A C G T A G C T A C G T A C G T A C G T A C G T
A C G T C T A G C T G A A G T C G A C T G A C T G A C T A C G T C T G A G C A T C A G T G A C T C G A T T C A G C T G A G T C A

PH0078.1_Hoxd13/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AKRMTTYAATTT----
NNANTTTTATTGGNNN
C G T A C A T G T C A G T G C A A C G T A C G T A G C T C G T A C G T A A G C T A C G T A G C T A C G T A C G T A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:4
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:AKRMTTYAATTT--
----TTTAATTGCN
C G T A C A T G T C A G T G C A A C G T A C G T A G C T C G T A C G T A A G C T A C G T A G C T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

PHOX2B/MA0681.2/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AKRMTTYAATTT--
NNATAATTTGATTANN
A C G T A C G T C G T A C A T G T C A G T G C A A C G T A C G T A G C T C G T A C G T A A G C T A C G T A G C T A C G T A C G T
C G T A C G A T G C T A G C A T C G T A G C T A G C A T C G A T C G A T C T A G C G T A G C A T G C A T C G T A C G T A G C T A

PH0046.1_Hoxa10/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AKRMTTYAATTT----
TNAATTTTATTACCTN
C G T A C A T G T C A G T G C A A C G T A C G T A G C T C G T A C G T A A G C T A C G T A G C T A C G T A C G T A C G T A C G T
G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A

PB0068.1_Sox1_1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AKRMTTYAATTT---
NNNTATTGAATTGNNN
A C G T C G T A C A T G T C A G T G C A A C G T A C G T A G C T C G T A C G T A A G C T A C G T A G C T A C G T A C G T A C G T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

PH0075.1_Hoxd10/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AKRMTTYAATTT----
NTNAATTTTATTGNATT
A C G T C G T A C A T G T C A G T G C A A C G T A C G T A G C T C G T A C G T A A G C T A C G T A G C T A C G T A C G T A C G T A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AKRMTTYAATTT----
NGANTTTTATGGCTCN
C G T A C A T G T C A G T G C A A C G T A C G T A G C T C G T A C G T A A G C T A C G T A G C T A C G T A C G T A C G T A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer

Match Rank:10
Score:0.58
Offset:3
Orientation:forward strand
Alignment:AKRMTTYAATTT---
---CTTTGATGTGSB
C G T A C A T G T C A G T G C A A C G T A C G T A G C T C G T A C G T A A G C T A C G T A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C G A C T A G C T C G A T A T C G G C T A C G A T A T C G C G A T A C T G T A C G A C G T