Information for 16-GAATTTATATGA (Motif 25)

A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T C T G A A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A A G C T C G T A A C G T C G T A C G T A C G T A C G A T A C G T A G T C
p-value:1e-5
log p-value:-1.355e+01
Information Content per bp:1.959
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.31%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets94.6 +/- 21.7bp
Average Position of motif in Background97.4 +/- 11.0bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)2.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL012.1_TATA-Box/Jaspar

Match Rank:1
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----GAATTTATATGA
NNNNNNCTTTTATAN--
A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T C T G A A C G T A C T G C G T A
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T

TBP/MA0108.2/Jaspar

Match Rank:2
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----GAATTTATATGA
NNNNNNCTTTTATAN--
A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T C T G A A C G T A C T G C G T A
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T

PB0171.1_Sox18_2/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----GAATTTATATGA
GGACTGAATTCATGCC-
A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T C T G A A C G T A C T G C G T A
C T A G A C T G C T G A A T G C A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A C G A T C T A G G T A C T G A C A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GAATTTATATGA-----
-NAATTTTACGAGNTNN
A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T C T G A A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GAATTTATATGA
-NTTTTATDRG-
A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T C T G A A C G T A C T G C G T A
A C G T C T A G G C A T A C G T G C A T G A C T C G T A G A C T C A T G C T A G A T C G A C G T

PB0080.1_Tbp_1/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GAATTTATATGA---
TCTTTATATATAAATA
A C G T A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T C T G A A C G T A C T G C G T A A C G T A C G T A C G T
A G C T A G T C G C A T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A G T C A C A G T T C G A

Arid3b/MA0601.1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GAATTTATATGA
NTAATTAATAT--
A C G T A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T C T G A A C G T A C T G C G T A
A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:8
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GAATTTATATGA
--TTTTATKRGG
A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T C T G A A C G T A C T G C G T A
A C G T A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GAATTTATATGA
--TTTTATTRGN
A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T C T G A A C G T A C T G C G T A
A C G T A C G T C G A T A C G T A C G T G C A T C G T A G A C T C A G T C T A G A T C G G A T C

HOXC10/MA0905.1/Jaspar

Match Rank:10
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GAATTTATATGA-
---NTTTTACGAC
A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T C T G A A C G T A C T G C G T A A C G T
A C G T A C G T A C G T C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C