Information for 6-GCCGTTTGTC (Motif 27)

A C T G A G T C A G T C A C T G A C G T A C G T A C G T A C T G A C G T A G T C
Reverse Opposite:
A C T G C G T A A G T C C G T A C G T A C G T A A G T C A C T G A C T G A G T C
p-value:1e-3
log p-value:-8.328e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif5.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets94.0 +/- 0.0bp
Average Position of motif in Background121.9 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GCCGTTTGTC
BRRCVGTTDN--
A C G T A C G T A C T G A G T C A G T C A C T G A C G T A C G T A C G T A C T G A C G T A G T C
A G C T C T A G C T A G A G T C T G C A A C T G A C G T C G A T C G T A T C A G A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:2
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GCCGTTTGTC--
--CCTTTGTTTT
A C T G A G T C A G T C A C T G A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C G T
A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GCCGTTTGTC
--CCWTTGTY
A C T G A G T C A G T C A C T G A C G T A C G T A C G T A C T G A C G T A G T C
A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer

Match Rank:4
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GCCGTTTGTC---
-BCCWTTGTBYKV
A C T G A G T C A G T C A C T G A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A T G C G A C T A C T G T A C G

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GCCGTTTGTC--
NTGCCCTTGGGCGN
A C G T A C G T A C T G A G T C A G T C A C T G A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C G T
G A T C G C A T T C A G G T A C G A T C G A T C C G A T G A C T C T A G C T A G C A T G A G T C C T A G T A C G

MSGN1/MA1524.1/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCCGTTTGTC-
CGCCATATGTCC
A C G T A C T G A G T C A G T C A C T G A C G T A C G T A C G T A C T G A C G T A G T C A C G T
A T G C T C A G A T G C A T G C C T G A G C A T C G T A A G C T A T C G A C G T A G T C T A G C

PB0149.1_Myb_2/Jaspar

Match Rank:7
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----GCCGTTTGTC-
NNNTGGCAGTTGGTNN
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C T G A C G T A C G T A C G T A C T G A C G T A G T C A C G T
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G

SOX4/MA0867.2/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GCCGTTTGTC-
-NCCTTTGTTC
A C T G A G T C A G T C A C T G A C G T A C G T A C G T A C T G A C G T A G T C A C G T
A C G T A G T C A G T C G A T C C G A T A G C T A G C T T A C G C G A T A G C T G A T C

PB0032.1_IRC900814_1/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCCGTTTGTC------
GNNATTTGTCGTAANN
A C T G A G T C A G T C A C T G A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
T C A G G A T C G C A T C G T A C G A T C G A T G A C T A C T G G A C T A G T C A C T G C A G T T C G A C T G A G C T A G C A T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GCCGTTTGTC--
--CCATTGTTNY
A C T G A G T C A G T C A C T G A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C G T
A C G T A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T