Information for 5-CTGRCCYSARTG (Motif 7)

A G T C A C G T A C T G C T G A A G T C A G T C A G C T A T C G G T C A C T G A A C G T A C T G
Reverse Opposite:
A G T C C G T A A G C T A C G T A T G C C T G A A C T G A C T G A G C T A G T C C G T A A C T G
p-value:1e-13
log p-value:-3.130e+01
Information Content per bp:1.874
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.17%
Number of Background Sequences with motif19.6
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets82.9 +/- 52.3bp
Average Position of motif in Background125.2 +/- 38.2bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORB/MA1150.1/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CTGRCCYSARTG
NTGACCTAATT-
A G T C A C G T A C T G C T G A A G T C A G T C A G C T A T C G G T C A C T G A A C G T A C T G
C T A G G A C T C T A G T C G A G A T C T G A C G A C T T G C A G C T A C G A T G C A T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CTGRCCYSARTG
-TGACCTYA---
A G T C A C G T A C T G C T G A A G T C A G T C A G C T A T C G G T C A C T G A A C G T A C T G
A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T

Plagl1/MA1615.1/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CTGRCCYSARTG
NNTGGCCCCAGNN
A C G T A G T C A C G T A C T G C T G A A G T C A G T C A G C T A T C G G T C A C T G A A C G T A C T G
A T G C T A G C A G C T T A C G C A T G A T G C A T G C A G T C A T G C C G T A A T C G A T C G A T C G

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:4
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CTGRCCYSARTG
NNHYTGACCTAGWTT
A C G T A C G T A C G T A G T C A C G T A C T G C T G A A G T C A G T C A G C T A T C G G T C A C T G A A C G T A C T G
A C G T G A T C G A C T G A T C A C G T A C T G T C G A A G T C A G T C A G C T C T G A T C A G C G A T C G A T G C A T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CTGRCCYSARTG
-TGACCT-----
A G T C A C G T A C T G C T G A A G T C A G T C A G C T A T C G G T C A C T G A A C G T A C T G
A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:6
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CTGRCCYSARTG
-TGACCTARTT-
A G T C A C G T A C T G C T G A A G T C A G T C A G C T A T C G G T C A C T G A A C G T A C T G
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:7
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CTGRCCYSARTG
-TGACCTARTT-
A G T C A C G T A C T G C T G A A G T C A G T C A G C T A T C G G T C A C T G A A C G T A C T G
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CTGRCCYSARTG
-TGACCTTGAT-
A G T C A C G T A C T G C T G A A G T C A G T C A G C T A T C G G T C A C T G A A C G T A C T G
A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T

NR2C1/MA1535.1/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CTGRCCYSARTG
NTGACCTCN---
A G T C A C G T A C T G C T G A A G T C A G T C A G C T A T C G G T C A C T G A A C G T A C T G
C T A G A G C T A T C G G T C A A G T C G T A C A G C T G A T C C A T G A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:10
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CTGRCCYSARTG
-TGACCYCT---
A G T C A C G T A C T G C T G A A G T C A G T C A G C T A T C G G T C A C T G A A C G T A C T G
A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T