Information for 4-AAGTTTAT (Motif 27)

C T G A T G C A A C T G A C G T A C G T A C G T C G T A A C G T
Reverse Opposite:
C G T A A C G T C G T A C G T A G T C A A G T C A C G T A G C T
p-value:1e-4
log p-value:-1.122e+01
Information Content per bp:1.877
Number of Target Sequences with motif50.0
Percentage of Target Sequences with motif6.01%
Number of Background Sequences with motif1505.8
Percentage of Background Sequences with motif3.13%
Average Position of motif in Targets96.4 +/- 56.5bp
Average Position of motif in Background100.3 +/- 56.4bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:AAGTTTAT---
AAGGATATNTN
C T G A T G C A A C T G A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T
T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

Foxq1/MA0040.1/Jaspar

Match Rank:2
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--AAGTTTAT-
TATTGTTTATT
A C G T A C G T C T G A T G C A A C T G A C G T A C G T A C G T C G T A A C G T A C G T
G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T

NR1I3/MA1534.1/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-AAGTTTAT
AAAGTTCAT
A C G T C T G A T G C A A C T G A C G T A C G T A C G T C G T A A C G T
C G T A C T G A C T G A A C T G A C G T C A G T A G T C C T G A G A C T

PH0013.1_Cdx2/Jaspar

Match Rank:4
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-AAGTTTAT-------
NAATTTTATTACCNNN
A C G T C T G A T G C A A C T G A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:5
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:AAGTTTAT----
NTGTTTAYATWW
C T G A T G C A A C T G A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
C A G T A C G T C T A G A C G T A C G T A C G T C G T A A G C T T G C A G A C T C G T A C G T A

FOXG1/MA0613.1/Jaspar

Match Rank:6
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AAGTTTAT
TTGTTTAC
C T G A T G C A A C T G A C G T A C G T A C G T C G T A A C G T
C G A T A C G T A C T G A C G T A C G T A C G T C G T A A G T C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:7
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:AAGTTTAT---
-NTTTTATGAC
C T G A T G C A A C T G A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

BARHL1/MA0877.2/Jaspar

Match Rank:8
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:AAGTTTAT
NCGTTTAN
C T G A T G C A A C T G A C G T A C G T A C G T C G T A A C G T
G T A C G A T C C T A G G C A T A C G T G C A T C G T A A T C G

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AAGTTTAT----
DGWTTTATGRCN
C T G A T G C A A C T G A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

BARHL2/MA0635.1/Jaspar

Match Rank:10
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AAGTTTAT-
ANCGTTTANN
A C G T C T G A T G C A A C T G A C G T A C G T A C G T C G T A A C G T A C G T
C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C