Information for 20-CTGCTCATAYAT (Motif 28)

G T A C C G A T A T C G A G T C C G A T A G T C C G T A A C G T C G T A A G T C C G T A C A G T
Reverse Opposite:
G C T A A C G T T C A G A C G T C G T A C G A T A C T G C G T A A C T G T A G C C G T A C A T G
p-value:1e-5
log p-value:-1.160e+01
Information Content per bp:1.779
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif14.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets103.0 +/- 52.9bp
Average Position of motif in Background116.7 +/- 58.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTGCTCATAYAT---
AAAGCTCGTAAAATTT
A C G T G T A C C G A T A T C G A G T C C G A T A G T C C G T A A C G T C G T A A G T C C G T A C A G T A C G T A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

SRF/MA0083.3/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CTGCTCATAYAT-----
-TGACCATATATGGTCA
G T A C C G A T A T C G A G T C C G A T A G T C C G T A A C G T C G T A A G T C C G T A C A G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T A C T G G T C A A T G C A G T C C G T A C G A T C T G A A C G T C G T A G C A T T A C G C T A G C A G T T G A C C G T A

PH0048.1_Hoxa13/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTGCTCATAYAT---
AAACCTCGTAAAATTT
A C G T G T A C C G A T A T C G A G T C C G A T A G T C C G T A A C G T C G T A A G T C C G T A C A G T A C G T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

PB0104.1_Zscan4_1/Jaspar

Match Rank:4
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CTGCTCATAYAT
TACATGTGCACATAAAA
A C G T A C G T A C G T A C G T A C G T G T A C C G A T A T C G A G T C C G A T A G T C C G T A A C G T C G T A A G T C C G T A C A G T
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A

HOXC13/MA0907.1/Jaspar

Match Rank:5
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CTGCTCATAYAT-
--GCTCGTAAAAA
G T A C C G A T A T C G A G T C C G A T A G T C C G T A A C G T C G T A A G T C C G T A C A G T A C G T
A C G T A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PB0026.1_Gm397_1/Jaspar

Match Rank:6
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CTGCTCATAYAT
CAGATGTGCACATACGT
A C G T A C G T A C G T A C G T A C G T G T A C C G A T A T C G A G T C C G A T A G T C C G T A A C G T C G T A A G T C C G T A C A G T
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T

PB0099.1_Zfp691_1/Jaspar

Match Rank:7
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------CTGCTCATAYAT
CGAACAGTGCTCACTAT-
A C G T A C G T A C G T A C G T A C G T A C G T G T A C C G A T A T C G A G T C C G A T A G T C C G T A A C G T C G T A A G T C C G T A C A G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:8
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CTGCTCATAYAT
--CCYMATAAAA
G T A C C G A T A T C G A G T C C G A T A G T C C G T A A C G T C G T A A G T C C G T A C A G T
A C G T A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

PBX2/MA1113.2/Jaspar

Match Rank:9
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CTGCTCATAYAT----
---GTCATAAATCATT
G T A C C G A T A T C G A G T C C G A T A G T C C G T A A C G T C G T A A G T C C G T A C A G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C A G G A C T G T A C C T G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G A C T G C A T

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CTGCTCATAYAT-----
--NNCCATAAATCATNN
G T A C C G A T A T C G A G T C C G A T A G T C C G T A A C G T C G T A A G T C C G T A C A G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A T C A G G A T C G T A C T C G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G C A T G C A T G A C T