Information for 1-CDGKCCCTTTAG (Motif 1)

A G T C C G A T C T A G A C G T G T A C G T A C G T A C G A C T C G A T A C G T C G T A A C T G
Reverse Opposite:
T G A C C G A T T C G A C G T A C G T A C A T G C A T G C A T G T G C A A G T C G C T A T A C G
p-value:1e-6
log p-value:-1.511e+01
Information Content per bp:1.617
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif63.64%
Number of Background Sequences with motif4177.0
Percentage of Background Sequences with motif5.18%
Average Position of motif in Targets84.1 +/- 59.7bp
Average Position of motif in Background100.1 +/- 74.4bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1/MA1608.1/Jaspar

Match Rank:1
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CDGKCCCTTTAG--
---ATCCATTAGCA
A G T C C G A T C T A G A C G T G T A C G T A C G T A C G A C T C G A T A C G T C G T A A C T G A C G T A C G T
A C G T A C G T A C G T C T G A A C G T G A T C G T A C C T G A G C A T G A C T G C T A C T A G A G T C T G C A

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:2
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CDGKCCCTTTAG
----BCMATTAG
A G T C C G A T C T A G A C G T G T A C G T A C G T A C G A C T C G A T A C G T C G T A A C T G
A C G T A C G T A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G

BARHL1/MA0877.2/Jaspar

Match Rank:3
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CDGKCCCTTTAG
----NCGTTTAN
A G T C C G A T C T A G A C G T G T A C G T A C G T A C G A C T C G A T A C G T C G T A A C T G
A C G T A C G T A C G T A C G T G T A C G A T C C T A G G C A T A C G T G C A T C G T A A T C G

BARHL2/MA0635.1/Jaspar

Match Rank:4
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CDGKCCCTTTAG-
---ANCGTTTANN
A G T C C G A T C T A G A C G T G T A C G T A C G T A C G A C T C G A T A C G T C G T A A C T G A C G T
A C G T A C G T A C G T C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C

BSX/MA0876.1/Jaspar

Match Rank:5
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CDGKCCCTTTAG
----CCAATTAA
A G T C C G A T C T A G A C G T G T A C G T A C G T A C G A C T C G A T A C G T C G T A A C T G
A C G T A C G T A C G T A C G T T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A

BARX1/MA0875.1/Jaspar

Match Rank:6
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CDGKCCCTTTAG
----GCAATTAG
A G T C C G A T C T A G A C G T G T A C G T A C G T A C G A C T C G A T A C G T C G T A A C T G
A C G T A C G T A C G T A C G T T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G

ZBTB6/MA1581.1/Jaspar

Match Rank:7
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CDGKCCCTTTAG----
---GTCCTTGAGCCCG
A G T C C G A T C T A G A C G T G T A C G T A C G T A C G A C T C G A T A C G T C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G A G C T T A G C G T A C A G C T C A G T T A C G G T C A T C A G G T A C G A T C T G A C T A C G

NKX2-8/MA0673.1/Jaspar

Match Rank:8
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CDGKCCCTTTAG
---CCACTTGAA
A G T C C G A T C T A G A C G T G T A C G T A C G T A C G A C T C G A T A C G T C G T A A C T G
A C G T A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A

NKX2-3/MA0672.1/Jaspar

Match Rank:9
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CDGKCCCTTTAG
--ACCACTTGAA
A G T C C G A T C T A G A C G T G T A C G T A C G T A C G A C T C G A T A C G T C G T A A C T G
A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

E-box(bHLH)/Promoter/Homer

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CDGKCCCTTTAG
CCGGTCACGTGA-
A C G T A G T C C G A T C T A G A C G T G T A C G T A C G T A C G A C T C G A T A C G T C G T A A C T G
A T G C A T G C A T C G T A C G A G C T A G T C G C T A A G T C T C A G G A C T A C T G T C G A A C G T