| p-value: | 1e-3 |
| log p-value: | -6.925e+00 |
| Information Content per bp: | 1.530 |
| Number of Target Sequences with motif | 1.0 |
| Percentage of Target Sequences with motif | 9.09% |
| Number of Background Sequences with motif | 7.7 |
| Percentage of Background Sequences with motif | 0.01% |
| Average Position of motif in Targets | 148.0 +/- 0.0bp |
| Average Position of motif in Background | 77.4 +/- 67.5bp |
| Strand Bias (log2 ratio + to - strand density) | 10.0 |
| Multiplicity (# of sites on avg that occur together) | 1.00 |
| Motif File: | file (matrix) reverse opposite |
| SVG Files for Logos: | forward logo reverse opposite |
PB0157.1_Rara_2/Jaspar
| Match Rank: | 1 |
| Score: | 0.70 |
| Offset: | -1 |
| Orientation: | forward strand |
| Alignment: | -TAGTTGGGTC----- AGAGCGGGGTCAAGTA |
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RORC/MA1151.1/Jaspar
| Match Rank: | 2 |
| Score: | 0.66 |
| Offset: | -1 |
| Orientation: | forward strand |
| Alignment: | -TAGTTGGGTC- ATAAGTAGGTCA |
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|
RORA(var.2)/MA0072.1/Jaspar
| Match Rank: | 3 |
| Score: | 0.65 |
| Offset: | -2 |
| Orientation: | forward strand |
| Alignment: | --TAGTTGGGTC-- TATAAGTAGGTCAA |
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|
LHX2/MA0700.2/Jaspar
| Match Rank: | 4 |
| Score: | 0.64 |
| Offset: | -2 |
| Orientation: | reverse strand |
| Alignment: | --TAGTTGGGTC NNTAATTGGNN- |
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|
|
RORB/MA1150.1/Jaspar
| Match Rank: | 5 |
| Score: | 0.63 |
| Offset: | 1 |
| Orientation: | forward strand |
| Alignment: | TAGTTGGGTC-- -AATTAGGTCAC |
|
|
|
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer
| Match Rank: | 6 |
| Score: | 0.63 |
| Offset: | 1 |
| Orientation: | forward strand |
| Alignment: | TAGTTGGGTC- -AAYTAGGTCA |
|
|
|
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer
| Match Rank: | 7 |
| Score: | 0.63 |
| Offset: | 1 |
| Orientation: | forward strand |
| Alignment: | TAGTTGGGTC- -AAYTAGGTCA |
|
|
|
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer
| Match Rank: | 8 |
| Score: | 0.63 |
| Offset: | 0 |
| Orientation: | forward strand |
| Alignment: | TAGTTGGGTC-- WAABTAGGTCAV |
|
|
|
MSX2/MA0708.1/Jaspar
| Match Rank: | 9 |
| Score: | 0.61 |
| Offset: | -1 |
| Orientation: | reverse strand |
| Alignment: | -TAGTTGGGTC NTAATTGG--- |
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|
PB0153.1_Nr2f2_2/Jaspar
| Match Rank: | 10 |
| Score: | 0.61 |
| Offset: | -1 |
| Orientation: | forward strand |
| Alignment: | -TAGTTGGGTC----- CGCGCCGGGTCACGTA |
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