Information for 5-TTGATAHAVGAC (Motif 5)

G C A T A C G T A C T G T G C A A C G T C G T A G C T A C G T A T A G C A C T G G T C A G T A C
Reverse Opposite:
A C T G A C G T A G T C A C T G A C G T C A G T A C G T C G T A A C G T A G T C C G T A C G T A
p-value:1e-5
log p-value:-1.183e+01
Information Content per bp:1.784
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif35.4
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets159.0 +/- 16.0bp
Average Position of motif in Background116.4 +/- 79.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

DMRT3/MA0610.1/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-TTGATAHAVGAC
NTTGATACATT--
A C G T G C A T A C G T A C T G T G C A A C G T C G T A G C T A C G T A T A G C A C T G G T C A G T A C
C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T A C G T A C G T

DMRTC2/MA1479.1/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TTGATAHAVGAC
AATTGATACATT--
A C G T A C G T G C A T A C G T A C T G T G C A A C G T C G T A G C T A C G T A T A G C A C T G G T C A G T A C
G C T A C G T A G C A T A C G T A T C G G T C A G C A T G T C A A T G C C G T A G C A T C A G T A C G T A C G T

DMRTA2/MA1478.1/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TTGATAHAVGAC
AATTGTTACATT--
A C G T A C G T G C A T A C G T A C T G T G C A A C G T C G T A G C T A C G T A T A G C A C T G G T C A G T A C
G C T A C G T A G C A T A G C T A C T G G C A T G C A T C T G A A G T C C G T A C G A T A C G T A C G T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TTGATAHAVGAC
-TGATTGATGA-
G C A T A C G T A C T G T G C A A C G T C G T A G C T A C G T A T A G C A C T G G T C A G T A C
A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T

BARHL2/MA0635.1/Jaspar

Match Rank:5
Score:0.59
Offset:2
Orientation:forward strand
Alignment:TTGATAHAVGAC
--GCTAAACGGT
G C A T A C G T A C T G T G C A A C G T C G T A G C T A C G T A T A G C A C T G G T C A G T A C
A C G T A C G T T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T

PBX2/MA1113.2/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TTGATAHAVGAC
NNTGATTTATGNN
A C G T G C A T A C G T A C T G T G C A A C G T C G T A G C T A C G T A T A G C A C T G G T C A G T A C
C G T A C T G A C G A T C T A G C G T A C G A T C G A T C A G T T C G A G A C T C A T G C T G A A G T C

PH0166.1_Six6_2/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TTGATAHAVGAC-
AATNTTGATACCCTATN
A C G T A C G T A C G T A C G T G C A T A C G T A C T G T G C A A C G T C G T A G C T A C G T A T A G C A C T G G T C A G T A C A C G T
T G C A C T G A C G A T C T G A C G A T C G A T C A T G C G T A G A C T G T C A A G T C G A T C G A T C A G C T G C T A G C A T G A C T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TTGATAHAVGAC
ATGATKGATGRC
G C A T A C G T A C T G T G C A A C G T C G T A G C T A C G T A T A G C A C T G G T C A G T A C
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

PH0134.1_Pbx1/Jaspar

Match Rank:9
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------TTGATAHAVGAC
NNNNNATTGATGNGTGN-
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C G T A C T G T G C A A C G T C G T A G C T A C G T A T A G C A C T G G T C A G T A C
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A A C G T

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TTGATAHAVGAC
RTGATTKATRGN
G C A T A C G T A C T G T G C A A C G T C G T A G C T A C G T A T A G C A C T G G T C A G T A C
C T G A C G A T C T A G C G T A A G C T C G A T C A G T C T G A G A C T C T A G C T A G A T G C