Information for 7-ATGTTTGGCTGC (Motif 9)

C G T A A C G T A C T G A C G T A C G T A C G T A C T G A C T G A G T C A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C C G T A A C T G A G T C A G T C C G T A C G T A C G T A A G T C C G T A A C G T
p-value:1e-3
log p-value:-9.152e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets105.0 +/- 0.0bp
Average Position of motif in Background57.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---ATGTTTGGCTGC
GTCATGCHTGRCTGS
A C G T A C G T A C G T C G T A A C G T A C T G A C G T A C G T A C G T A C T G A C T G A G T C A C G T A C T G A G T C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

PB0121.1_Foxj3_2/Jaspar

Match Rank:2
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----ATGTTTGGCTGC-
NNCTTTGTTTTGNTNNN
A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T A C G T A C G T A C T G A C T G A G T C A C G T A C T G A G T C A C G T
G C A T A T G C G T A C C G A T G C A T C G A T C T A G C G A T C A G T C G A T A C G T C T A G C A T G G A C T T A C G G C A T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----ATGTTTGGCTGC
NGTCACGCTTGGCTGC
A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T A C G T A C G T A C T G A C T G A G T C A C G T A C T G A G T C
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:ATGTTTGGCTGC-
-TGATTGGCTANN
C G T A A C G T A C T G A C G T A C G T A C G T A C T G A C T G A G T C A C G T A C T G A G T C A C G T
A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.62
Offset:4
Orientation:forward strand
Alignment:ATGTTTGGCTGC
----TWGTCTGV
C G T A A C G T A C T G A C G T A C G T A C G T A C T G A C T G A G T C A C G T A C T G A G T C
A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

ZNF449/MA1656.1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-ATGTTTGGCTGC-
NNGGTTGGGCTTNN
A C G T C G T A A C G T A C T G A C G T A C G T A C G T A C T G A C T G A G T C A C G T A C T G A G T C A C G T
A T G C C A G T C A T G A C T G G A C T C G A T C A T G A C T G A T C G A G T C C G A T A C G T A C T G C A T G

NFYC/MA1644.1/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-ATGTTTGGCTGC
NCTGATTGGNN--
A C G T C G T A A C G T A C T G A C G T A C G T A C G T A C T G A C T G A G T C A C G T A C T G A G T C
A C G T A T G C A G C T A T C G C T G A A G C T C G A T C A T G T C A G G A T C A G C T A C G T A C G T

NFYA/MA0060.3/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-ATGTTTGGCTGC
NCTGATTGGNN--
A C G T C G T A A C G T A C T G A C G T A C G T A C G T A C T G A C T G A G T C A C G T A C T G A G T C
A C G T A T G C A G C T A T C G C T G A A G C T C G A T C T A G T C A G G A C T A G C T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:ATGTTTGGCTGC
---NTTGGCANN
C G T A A C G T A C T G A C G T A C G T A C G T A C T G A C T G A G T C A C G T A C T G A G T C
A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----ATGTTTGGCTGC-
NNTNNTGTCTGGNNTNG
A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T A C G T A C G T A C T G A C T G A G T C A C G T A C T G A G T C A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G