Information for 19-TTATTGCC (Motif 46)

A C G T A C G T C G T A C G A T A C G T C T A G A T G C A T G C
Reverse Opposite:
A T C G A T C G A G T C C G T A C G T A A C G T C G T A C G T A
p-value:1e-3
log p-value:-7.106e+00
Information Content per bp:1.865
Number of Target Sequences with motif397.0
Percentage of Target Sequences with motif3.23%
Number of Background Sequences with motif1031.5
Percentage of Background Sequences with motif2.75%
Average Position of motif in Targets105.0 +/- 57.6bp
Average Position of motif in Background101.8 +/- 55.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.2/Jaspar

Match Rank:1
Score:0.82
Offset:-3
Orientation:reverse strand
Alignment:---TTATTGCC-
NTTTTATTGCNN
A C G T A C G T A C G T A C G T A C G T C G T A C G A T A C G T C T A G A T G C A T G C A C G T
C G A T G C A T C G A T G C A T G C A T T C G A G A C T C A G T C T A G G A T C G C A T G A C T

HOXD13/MA0909.2/Jaspar

Match Rank:2
Score:0.81
Offset:-3
Orientation:reverse strand
Alignment:---TTATTGCC
GTTTTATTGGG
A C G T A C G T A C G T A C G T A C G T C G T A C G A T A C G T C T A G A T G C A T G C
A C T G A C G T A C G T A G C T A C G T C G T A A G C T A C G T A C T G A T C G A T C G

HOXA13/MA0650.2/Jaspar

Match Rank:3
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---TTATTGCC
GTTTTATTGGN
A C G T A C G T A C G T A C G T A C G T C G T A C G A T A C G T C T A G A T G C A T G C
C A T G C A G T A C G T A G C T A G C T C G T A A C G T A C G T C T A G A T C G A C T G

CDX4/MA1473.1/Jaspar

Match Rank:4
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---TTATTGCC
GTTTTATTGCC
A C G T A C G T A C G T A C G T A C G T C G T A C G A T A C G T C T A G A T G C A T G C
T C A G C A G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G T C G T A C

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--TTATTGCC
TTTNATTGCY
A C G T A C G T A C G T A C G T C G T A C G A T A C G T C T A G A T G C A T G C
A C G T A C G T C G A T A C G T G T C A A C G T C A G T C T A G A T G C G A T C

PH0013.1_Cdx2/Jaspar

Match Rank:6
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----TTATTGCC---
NAATTTTATTACCNNN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G A T A C G T C T A G A T G C A T G C A C G T A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

NKX6-3/MA1530.1/Jaspar

Match Rank:7
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-TTATTGCC
TTTAATGAN
A C G T A C G T A C G T C G T A C G A T A C G T C T A G A T G C A T G C
C G A T C G A T A G C T C T G A C G T A A C G T T C A G C T G A A T C G

HOXB13/MA0901.2/Jaspar

Match Rank:8
Score:0.74
Offset:-5
Orientation:reverse strand
Alignment:-----TTATTGCC-
NNATTTTATTGGNN
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G A T A C G T C T A G A T G C A T G C A C G T
C G T A C G T A C G T A C G A T C G A T C G A T G C A T T G C A G C A T C G A T C T A G C A T G G C A T G C A T

CDX1/MA0878.2/Jaspar

Match Rank:9
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---TTATTGCC
GTTTTATGGCC
A C G T A C G T A C G T A C G T A C G T C G T A C G A T A C G T C T A G A T G C A T G C
T C A G C A G T A G C T A C G T A G C T C G T A A C G T A C T G T C A G G A T C G T A C

HOXA10/MA0899.1/Jaspar

Match Rank:10
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---TTATTGCC
NTTTTATTACN
A C G T A C G T A C G T A C G T A C G T C G T A C G A T A C G T C T A G A T G C A T G C
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C