Information for 22-CTTGAGTGCA (Motif 34)

A G T C A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C C G T A A G T C A C G T A G T C C G T A C G T A A C T G
p-value:1e-2
log p-value:-6.830e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif30.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets119.0 +/- 0.0bp
Average Position of motif in Background113.5 +/- 81.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX2-5/MA0063.2/Jaspar

Match Rank:1
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-CTTGAGTGCA
NNTTGAGTGNN
A C G T A G T C A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C C G T A
C G A T A G C T C G A T G C A T C T A G C G T A C T A G G A C T C T A G A C T G A G C T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:CTTGAGTGCA-
CTTGAGTGGCT
A G T C A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C C G T A A C G T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

NKX2-2/MA1645.1/Jaspar

Match Rank:3
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--CTTGAGTGCA--
NNNTTGAGTGGNNN
A C G T A C G T A G T C A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C C G T A A C G T A C G T
C G A T C G A T A G T C A G C T C A G T T A C G C G T A C A T G C G A T C T A G A C T G G C A T C G A T C T G A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:4
Score:0.77
Offset:0
Orientation:forward strand
Alignment:CTTGAGTGCA
BTBRAGTGSN
A G T C A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C C G T A
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

MSANTD3/MA1523.1/Jaspar

Match Rank:5
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:CTTGAGTGCA-
-GTGAGTGNAC
A G T C A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C C G T A A C G T
A C G T C A T G C A G T C T A G C G T A C T A G G C A T C T A G A C G T T G C A T A G C

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:CTTGAGTGCA
CTYRAGTGSY
A G T C A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C C G T A
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:CTTGAGTGCA-
-TTGAGTGSTT
A G T C A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C C G T A A C G T
A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:8
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CTTGAGTGCA-
-TTRAGTGSYK
A G T C A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C C G T A A C G T
A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:9
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CTTGAGTGCA-
-TTAAGTGCTT
A G T C A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C C G T A A C G T
A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

ISL2/MA0914.1/Jaspar

Match Rank:10
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CTTGAGTGCA
-TTAAGTGC-
A G T C A C G T A C G T A C T G C G T A A C T G A C G T A C T G A G T C C G T A
A C G T G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C A C G T