Information for 3-TTGAATGCCG (Motif 14)

A C G T A C G T A C T G C G T A C T G A C A G T A C T G A G T C A G T C A C T G
Reverse Opposite:
A G T C A C T G A C T G G T A C G T C A A G C T A C G T G T A C C G T A G T C A
p-value:1e-15
log p-value:-3.634e+01
Information Content per bp:1.860
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets122.3 +/- 50.6bp
Average Position of motif in Background128.9 +/- 56.0bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TTGAATGCCG
TTTGAAACCG-
A C G T A C G T A C G T A C T G C G T A C T G A C A G T A C T G A G T C A G T C A C T G
A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G A C G T

NKX2-5/MA0063.2/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TTGAATGCCG
NNTTGAGTGNN-
A C G T A C G T A C G T A C G T A C T G C G T A C T G A C A G T A C T G A G T C A G T C A C T G
C G A T A G C T C G A T G C A T C T A G C G T A C T A G G A C T C T A G A C T G A G C T A C G T

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TTGAATGCCG
TTTNATTGCY-
A C G T A C G T A C G T A C T G C G T A C T G A C A G T A C T G A G T C A G T C A C T G
A C G T A C G T C G A T A C G T G T C A A C G T C A G T C T A G A T G C G A T C A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TTGAATGCCG
CTTGAGTGGCT
A C G T A C G T A C G T A C T G C G T A C T G A C A G T A C T G A G T C A G T C A C T G
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

LIN54/MA0619.1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TTGAATGCCG
ATTTGAATT---
A C G T A C G T A C G T A C G T A C T G C G T A C T G A C A G T A C T G A G T C A G T C A C T G
C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:6
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------TTGAATGCCG
NNTNTCATGAATGT--
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A C T G A C A G T A C T G A G T C A G T C A C T G
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TTGAATGCCG--
BTGABTGACAGS
A C G T A C G T A C T G C G T A C T G A C A G T A C T G A G T C A G T C A C T G A C G T A C G T
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TTGAATGCCG
CTGGAATGYA-
A C G T A C G T A C G T A C T G C G T A C T G A C A G T A C T G A G T C A G T C A C T G
G T A C G A C T A C T G A C T G C G T A C G T A A C G T A C T G G A T C T C G A A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TTGAATGCCG
GTTAATGGCC-
A C G T A C G T A C G T A C T G C G T A C T G A C A G T A C T G A G T C A G T C A C T G
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TTGAATGCCG
NTTTCATTRCHD
A C G T A C G T A C G T A C G T A C T G C G T A C T G A C A G T A C T G A G T C A G T C A C T G
C G A T G C A T A C G T C G A T A G T C C G T A A C G T A C G T C T A G A G T C G A C T C A G T