Information for 1-TGGCATGTATCC (Motif 1)

A C G T A C T G A C T G A G T C C G T A A C G T A C T G A C G T G T C A A C G T A G T C A G T C
Reverse Opposite:
A C T G C T A G C G T A A C G T C G T A A G T C G T C A C G A T A C T G G T A C A G T C C G T A
p-value:1e-8
log p-value:-2.035e+01
Information Content per bp:1.858
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif73.3
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets123.3 +/- 37.6bp
Average Position of motif in Background96.0 +/- 111.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TGGCATGTATCC-
CTGGCAGNCTGCCA
A C G T A C G T A C T G A C T G A G T C C G T A A C G T A C T G A C G T G T C A A C G T A G T C A G T C A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TGGCATGTATCC
TGTCANYT----
A C G T A C T G A C T G A G T C C G T A A C G T A C T G A C G T G T C A A C G T A G T C A G T C
A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T A C G T A C G T A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:3
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TGGCATGTATCC--
---AATGTATCAAT
A C G T A C T G A C T G A G T C C G T A A C G T A C T G A C G T G T C A A C G T A G T C A G T C A C G T A C G T
A C G T A C G T A C G T G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T

HES6/MA1493.1/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TGGCATGTATCC
-GGCACGTGTT-
A C G T A C T G A C T G A G T C C G T A A C G T A C T G A C G T G T C A A C G T A G T C A G T C
A C G T A C T G T A C G T A G C C G T A A G T C T A C G A C G T A C T G G C A T G A C T A C G T

TEAD4/MA0809.2/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TGGCATGTATCC
NCTGGAATGTNN--
A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C G T A C T G A C G T G T C A A C G T A G T C A G T C
A T G C G A T C C G A T C T A G T C A G G C T A T C G A C G A T A C T G G A C T C T A G C T A G A C G T A C G T

TEAD1/MA0090.3/Jaspar

Match Rank:6
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---TGGCATGTATCC
NNCTGGAATGTNN--
A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C G T A C T G A C G T G T C A A C G T A G T C A G T C
A C T G A T G C G A T C G C A T C T A G C A T G G C T A T C G A G A C T A C T G G A C T C T A G C T A G A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TGGCATGTATCC
NTTGGCANN-----
A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C G T A C T G A C G T G T C A A C G T A G T C A G T C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TGGCATGTATCC
--GCACGTACCC
A C G T A C T G A C T G A G T C C G T A A C G T A C T G A C G T G T C A A C G T A G T C A G T C
A C G T A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

PKNOX2/MA0783.1/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TGGCATGTATCC
TGACAGGTGTCA
A C G T A C T G A C T G A G T C C G T A A C G T A C T G A C G T G T C A A C G T A G T C A G T C
C G A T T A C G C T G A A G T C C G T A C A T G T A C G A G C T T C A G G A C T T G A C C T G A

PH0140.1_Pknox1/Jaspar

Match Rank:10
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TGGCATGTATCC
GGATTGACAGGTCNTT
A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C G T A C T G A C G T G T C A A C G T A G T C A G T C
A C T G A C T G C G T A C G A T A C G T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A C G T G A C T G C A T