Information for 1-GNTGAATTATTC (Motif 1)

A C T G A G T C A C G T A C T G C T G A C T G A A C G T C G A T C G T A G C A T A C G T A G T C
Reverse Opposite:
C T A G C G T A C G T A A C G T C G T A C G T A A G C T A G C T A G T C G T C A A C T G G T A C
p-value:1e-6
log p-value:-1.539e+01
Information Content per bp:1.752
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif27.27%
Number of Background Sequences with motif90.9
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets96.7 +/- 52.6bp
Average Position of motif in Background96.0 +/- 65.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0010.1_Homeobox_class/Jaspar

Match Rank:1
Score:0.77
Offset:4
Orientation:reverse strand
Alignment:GNTGAATTATTC
----AATTATT-
A C T G A G T C A C G T A C T G C T G A C T G A A C G T C G A T C G T A G C A T A C G T A G T C
A C G T A C G T A C G T A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:GNTGAATTATTC--
--TGAATTATGCAT
A C T G A G T C A C G T A C T G C T G A C T G A A C G T C G A T C G T A G C A T A C G T A G T C A C G T A C G T
A C G T A C G T C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GNTGAATTATTC----
-ATGAATWATTCATGA
A C T G A G T C A C G T A C T G C T G A C T G A A C G T C G A T C G T A G C A T A C G T A G T C A C G T A C G T A C G T A C G T
A C G T G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A

PITX2/MA1547.1/Jaspar

Match Rank:4
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:GNTGAATTATTC
--GGGATTAN--
A C T G A G T C A C G T A C T G C T G A C T G A A C G T C G A T C G T A G C A T A C G T A G T C
A C G T A C G T A C T G T C A G C T A G G T C A A C G T A G C T C G T A C A G T A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GNTGAATTATTC
-NGGGATTA---
A C T G A G T C A C G T A C T G C T G A C T G A A C G T C G A T C G T A G C A T A C G T A G T C
A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T A C G T

PH0130.1_Otx2/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GNTGAATTATTC---
TGTAGGGATTAATTGTC
A C G T A C G T A C T G A G T C A C G T A C T G C T G A C T G A A C G T C G A T C G T A G C A T A C G T A G T C A C G T A C G T A C G T
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

POU4F1/MA0790.1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GNTGAATTATTC---
-ATGAATAATTAATG
A C T G A G T C A C G T A C T G C T G A C T G A A C G T C G A T C G T A G C A T A C G T A G T C A C G T A C G T A C G T
A C G T T C G A G A C T C T A G G T C A G C T A C G A T C G T A C G T A C G A T C G A T C G T A T C G A G A C T C A T G

PH0138.1_Pitx2/Jaspar

Match Rank:8
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GNTGAATTATTC---
TGAAGGGATTAATCATC
A C G T A C G T A C T G A G T C A C G T A C T G C T G A C T G A A C G T C G A T C G T A G C A T A C G T A G T C A C G T A C G T A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer

Match Rank:9
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GNTGAATTATTC---
NTTGATTGAATCWGV
A C T G A G T C A C G T A C T G C T G A C T G A A C G T C G A T C G T A G C A T A C G T A G T C A C G T A C G T A C G T
A C G T C G A T C G A T T C A G C G T A A C G T A C G T T C A G C T G A C G T A A C G T A G T C G C T A T A C G T C A G

PITX1/MA0682.2/Jaspar

Match Rank:10
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GNTGAATTATTC
--NGGATTAN--
A C T G A G T C A C G T A C T G C T G A C T G A A C G T C G A T C G T A G C A T A C G T A G T C
A C G T A C G T C A T G T C A G C A T G G T C A A C G T A C G T C G T A C T A G A C G T A C G T