Information for 5-GTCTARACTM (Motif 13)

A C T G A G C T A G T C A G C T G T C A C T A G C T G A A G T C A C G T G T C A
Reverse Opposite:
A C G T C G T A A C T G G A C T A G T C A C G T C T G A A C T G C T G A A G T C
p-value:1e-3
log p-value:-8.089e+00
Information Content per bp:1.802
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif6.25%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets190.0 +/- 0.0bp
Average Position of motif in Background59.7 +/- 20.2bp
Strand Bias (log2 ratio + to - strand density)-10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD5/MA1557.1/Jaspar

Match Rank:1
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-GTCTARACTM
TGTCTAGACA-
A C G T A C T G A G C T A G T C A G C T G T C A C T A G C T G A A G T C A C G T G T C A
G A C T T C A G C A G T T G A C A C G T T G C A T A C G G T C A G A T C G C T A A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:2
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-GTCTARACTM
CGTCTAGACA-
A C G T A C T G A G C T A G T C A G C T G T C A C T A G C T G A A G T C A C G T G T C A
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T

Smad4/MA1153.1/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GTCTARACTM
TGTCTAGA---
A C G T A C T G A G C T A G T C A G C T G T C A C T A G C T G A A G T C A C G T G T C A
G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A A C G T A C G T A C G T

ZSCAN29/MA1602.1/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GTCTARACTM-
CGTCTACACGGG
A C G T A C T G A G C T A G T C A G C T G T C A C T A G C T G A A G T C A C G T G T C A A C G T
A G T C C T A G A G C T G T A C A G C T G C T A G A T C C T G A A T G C T C A G C T A G T A C G

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------GTCTARACTM-
NNTNNTGTCTGGNNTNG
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G C T A G T C A G C T G T C A C T A G C T G A A G T C A C G T G T C A A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GTCTARACTM
CTGTCTGG----
A C G T A C G T A C T G A G C T A G T C A G C T G T C A C T A G C T G A A G T C A C G T G T C A
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T

GATA1/MA0035.4/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GTCTARACTM-
TTCTAATCTAT
A C T G A G C T A G T C A G C T G T C A C T A G C T G A A G T C A C G T G T C A A C G T
C G A T G C A T G T A C C G A T C G T A G C T A G C A T G T A C G C A T C G T A G C A T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GTCTARACTM
TWGTCTGV----
A C G T A C G T A C T G A G C T A G T C A G C T G T C A C T A G C T G A A G T C A C G T G T C A
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GTCTARACTM
VBSYGTCTGG----
A C G T A C G T A C G T A C G T A C T G A G C T A G T C A G C T G T C A C T A G C T G A A G T C A C G T G T C A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T

p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer

Match Rank:10
Score:0.51
Offset:-7
Orientation:forward strand
Alignment:-------GTCTARACTM---
NRRRCAWGTCCDGRCATGYY
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G C T A G T C A G C T G T C A C T A G C T G A A G T C A C G T G T C A A C G T A C G T A C G T
C G T A C T G A C T A G C T G A A G T C G C T A C G A T A T C G G A C T G A T C A G T C C T G A C T A G C T A G A G T C G C T A C G A T C T A G G A T C G A T C