Information for 3-CAATGCAT (Motif 32)

A G T C T G C A C G T A A C G T A C T G A G T C C G T A A G C T
Reverse Opposite:
C T G A A C G T A C T G A G T C C G T A A C G T A C G T C T A G
p-value:1e-3
log p-value:-7.769e+00
Information Content per bp:1.887
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif41.67%
Number of Background Sequences with motif4619.9
Percentage of Background Sequences with motif5.98%
Average Position of motif in Targets132.4 +/- 43.5bp
Average Position of motif in Background101.0 +/- 79.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.74
Offset:2
Orientation:forward strand
Alignment:CAATGCAT----
--ATGMATATDC
A G T C T G C A C G T A A C G T A C T G A G T C C G T A A G C T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

PH0148.1_Pou3f3/Jaspar

Match Rank:2
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----CAATGCAT-----
TNNATTATGCATANNTT
A C G T A C G T A C G T A C G T A G T C T G C A C G T A A C G T A C T G A G T C C G T A A G C T A C G T A C G T A C G T A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:3
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----CAATGCAT----
AATCGCACTGCATTCCG
A C G T A C G T A C G T A C G T A C G T A G T C T G C A C G T A A C G T A C T G A G T C C G T A A G C T A C G T A C G T A C G T A C G T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CAATGCAT----
--ATGAATATTC
A G T C T G C A C G T A A C G T A C T G A G T C C G T A A G C T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

ZNF143/MA0088.2/Jaspar

Match Rank:5
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------CAATGCAT--
TACCCACAATGCATTG
A C G T A C G T A C G T A C G T A C G T A C G T A G T C T G C A C G T A A C G T A C T G A G T C C G T A A G C T A C G T A C G T
A G C T C G T A G T A C G T A C A G T C C T G A A G T C T C G A C T G A C G A T T C A G A G T C G T C A G A C T G A C T C T A G

PB0028.1_Hbp1_1/Jaspar

Match Rank:6
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CAATGCAT---
ACTATGAATGAATGAT
A C G T A C G T A C G T A C G T A C G T A G T C T G C A C G T A A C G T A C T G A G T C C G T A A G C T A C G T A C G T A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

SOX18/MA1563.1/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CAATGCAT
CACAATGC--
A C G T A C G T A G T C T G C A C G T A A C G T A C T G A G T C C G T A A G C T
T A G C C T G A A G T C T C G A T G C A A G C T C T A G T A G C A C G T A C G T

POU5F1/MA1115.1/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CAATGCAT---
ATATGCAAATT
A G T C T G C A C G T A A C G T A C T G A G T C C G T A A G C T A C G T A C G T A C G T
C G T A G C A T T C G A G A C T C T A G A G T C G C T A C T G A G C T A G C A T C A G T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:9
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CAATGCAT--
ATGCATWATGCATRW
A C G T A C G T A C G T A C G T A C G T A G T C T G C A C G T A A C G T A C T G A G T C C G T A A G C T A C G T A C G T
C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:10
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CAATGCAT--
GGGATTGCATNN
A C G T A C G T A G T C T G C A C G T A A C G T A C T G A G T C C G T A A G C T A C G T A C G T
T C A G A T C G A C T G C T G A A C G T A C G T C A T G G T A C C T G A A G C T A G T C A G C T