Information for 4-AGGTTTGA (Motif 40)

C G T A A C T G A C T G A C G T A C G T A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A C G T A C G T A A G T C A G T C A C G T
p-value:1e-2
log p-value:-5.470e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif13.33%
Number of Background Sequences with motif391.8
Percentage of Background Sequences with motif0.65%
Average Position of motif in Targets80.7 +/- 41.6bp
Average Position of motif in Background102.2 +/- 69.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TBX15/MA0803.1/Jaspar

Match Rank:1
Score:0.82
Offset:0
Orientation:forward strand
Alignment:AGGTTTGA
AGGTGTGA
C G T A A C T G A C T G A C G T A C G T A C G T A C T G C G T A
C T G A C T A G T C A G A C G T A T C G A G C T A C T G C T G A

TBX1/MA0805.1/Jaspar

Match Rank:2
Score:0.81
Offset:0
Orientation:forward strand
Alignment:AGGTTTGA
AGGTGTGA
C G T A A C T G A C T G A C G T A C G T A C G T A C T G C G T A
C T G A T C A G A C T G A G C T A T C G G A C T A C T G T G C A

MGA/MA0801.1/Jaspar

Match Rank:3
Score:0.78
Offset:0
Orientation:forward strand
Alignment:AGGTTTGA
AGGTGTGA
C G T A A C T G A C T G A C G T A C G T A C G T A C T G C G T A
C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A

TBX21/MA0690.1/Jaspar

Match Rank:4
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-AGGTTTGA-
AAGGTGTGAA
A C G T C G T A A C T G A C T G A C G T A C G T A C G T A C T G C G T A A C G T
C T G A C T G A C T A G A C T G A G C T C A T G G A C T A C T G C T G A G C T A

TBX20/MA0689.1/Jaspar

Match Rank:5
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-AGGTTTGA--
TAGGTGTGAAG
A C G T C G T A A C T G A C T G A C G T A C G T A C G T A C T G C G T A A C G T A C G T
C G A T C T G A T C A G A C T G A C G T A C T G C A G T C A T G C G T A C G T A T C A G

EOMES/MA0800.1/Jaspar

Match Rank:6
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-AGGTTTGA----
AAGGTGTGAAAAT
A C G T C G T A A C T G A C T G A C G T A C G T A C G T A C T G C G T A A C G T A C G T A C G T A C G T
C T G A C T G A C T A G A C T G A G C T T C A G G A C T A C T G T C G A G C T A G T C A C G T A G A C T

TBX4/MA0806.1/Jaspar

Match Rank:7
Score:0.76
Offset:0
Orientation:forward strand
Alignment:AGGTTTGA
AGGTGTGA
C G T A A C T G A C T G A C G T A C G T A C G T A C T G C G T A
C T G A T C A G T A C G A G C T A C T G G A C T A C T G C T G A

TBR1/MA0802.1/Jaspar

Match Rank:8
Score:0.75
Offset:0
Orientation:forward strand
Alignment:AGGTTTGA--
AGGTGTGAAA
C G T A A C T G A C T G A C G T A C G T A C G T A C T G C G T A A C G T A C G T
C T G A C T A G A T C G A G C T A T C G G A C T A C T G C T G A G C T A G C T A

TBX18/MA1565.1/Jaspar

Match Rank:9
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--AGGTTTGA--
GGAGGTGTGAAA
A C G T A C G T C G T A A C T G A C T G A C G T A C G T A C G T A C T G C G T A A C G T A C G T
C T A G C T A G T C G A T C A G C T A G G A C T T C A G C A G T T A C G C G T A C T G A T C G A

Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer

Match Rank:10
Score:0.75
Offset:0
Orientation:forward strand
Alignment:AGGTTTGA--
AGGTGTGAAA
C G T A A C T G A C T G A C G T A C G T A C G T A C T G C G T A A C G T A C G T
C T G A C T A G A C T G G C A T C T A G G C A T A T C G C T G A C G T A G T C A