Information for 3-CGTAGCACAT (Motif 4)

A G T C A C T G A C G T C G T A A C T G A G T C C G T A A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G A C G T A C T G A G T C A C G T C G T A A G T C A C T G
p-value:1e-4
log p-value:-1.045e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets117.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CGTAGCACAT------
CGAAGCACACAAAATA
A G T C A C T G A C G T C G T A A C T G A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

MXI1/MA1108.2/Jaspar

Match Rank:2
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CGTAGCACAT---
---GACACATGGC
A G T C A C T G A C G T C G T A A C T G A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T C G A G A T C C T G A A G T C C T G A A G C T C T A G A C T G A T G C

PB0155.1_Osr2_2/Jaspar

Match Rank:3
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------CGTAGCACAT
NNTGTAGGTAGCANNT
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T C G T A A C T G A G T C C G T A A G T C C G T A A C G T
A C T G C T A G C G A T C A T G A G C T C G T A C T A G A C T G C G A T C T G A T A C G A G T C C T G A C T G A C T A G G A C T

PB0154.1_Osr1_2/Jaspar

Match Rank:4
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------CGTAGCACAT
NNNTTAGGTAGCNTNT
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T C G T A A C T G A G T C C G T A A G T C C G T A A C G T
A C T G C A G T G C T A C A G T A G C T C G T A C T A G A C T G C G A T C T G A C T A G A G T C C T G A C G A T C T A G G A C T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CGTAGCACAT-
-TTMACACCTT
A G T C A C T G A C G T C G T A A C T G A G T C C G T A A G T C C G T A A C G T A C G T
A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T

PB0050.1_Osr1_1/Jaspar

Match Rank:6
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CGTAGCACAT
ATTTACAGTAGCAAAA
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T C G T A A C T G A G T C C G T A A G T C C G T A A C G T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CGTAGCACAT-
-TTVACACCTH
A G T C A C T G A C G T C G T A A C T G A G T C C G T A A G T C C G T A A C G T A C G T
A C G T A C G T G A C T T C A G C T G A G T A C C T G A T A G C A G T C G A C T G A T C

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CGTAGCACAT
--TGACACCT
A G T C A C T G A C G T C G T A A C T G A G T C C G T A A G T C C G T A A C G T
A C G T A C G T G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T

PB0096.1_Zfp187_1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CGTAGCACAT--
TTATTAGTACATAN
A C G T A C G T A G T C A C T G A C G T C G T A A C T G A G T C C G T A A G T C C G T A A C G T A C G T A C G T
C A G T C G A T C G T A G A C T C G A T T C G A C T A G G A C T G C T A A G T C C T G A A G C T C T G A T C G A

POL013.1_MED-1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CGTAGCACAT
CGGAGC----
A G T C A C T G A C G T C G T A A C T G A G T C C G T A A G T C C G T A A C G T
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T