Information for 9-ATTAMTCATGGT (Motif 8)

T G C A G C A T A C G T G T C A G T A C A G C T T A G C G C T A A C G T C T A G A C T G G C A T
Reverse Opposite:
C G T A G T A C A G T C C G T A C G A T A T C G C T G A A C T G A C G T G T C A C G T A A C G T
p-value:1e-5
log p-value:-1.152e+01
Information Content per bp:1.670
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif2913.7
Percentage of Background Sequences with motif3.40%
Average Position of motif in Targets95.3 +/- 34.0bp
Average Position of motif in Background99.8 +/- 83.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1/MA1608.1/Jaspar

Match Rank:1
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:ATTAMTCATGGT-
--NNCTAATGGNN
T G C A G C A T A C G T G T C A G T A C A G C T T A G C G C T A A C G T C T A G A C T G G C A T A C G T
A C G T A C G T A C G T T C A G G A T C C G A T C T G A C G T A G A C T C A T G C T A G T G C A G A C T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:2
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---ATTAMTCATGGT
NNAATTAGTCACGGT
A C G T A C G T A C G T T G C A G C A T A C G T G T C A G T A C A G C T T A G C G C T A A C G T C T A G A C T G G C A T
A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T

HOXB4/MA1499.1/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:ATTAMTCATGGT
-NTAATGAT---
T G C A G C A T A C G T G T C A G T A C A G C T T A G C G C T A A C G T C T A G A C T G G C A T
A C G T A G T C A G C T G T C A C G T A A G C T A C T G C T G A A G C T A C G T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-ATTAMTCATGGT
GAATATTCAT---
A C G T T G C A G C A T A C G T G T C A G T A C A G C T T A G C G C T A A C G T C T A G A C T G G C A T
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:ATTAMTCATGGT
-YTAATCCY---
T G C A G C A T A C G T G T C A G T A C A G C T T A G C G C T A A C G T C T A G A C T G G C A T
A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T A C G T A C G T

PB0185.1_Tcf1_2/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:ATTAMTCATGGT--
NNTAATCCNGNCNN
T G C A G C A T A C G T G T C A G T A C A G C T T A G C G C T A A C G T C T A G A C T G G C A T A C G T A C G T
G A T C G T A C G C A T T G C A G T C A G A C T G T A C A G T C T C A G A T C G C T A G A G T C T G C A C G T A

PB0176.1_Sox5_2/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--ATTAMTCATGGT-
NNCTNAATTATGANN
A C G T A C G T T G C A G C A T A C G T G T C A G T A C A G C T T A G C G C T A A C G T C T A G A C T G G C A T A C G T
G A C T G A T C A T G C A C G T G C A T C T G A C G T A C G A T A C G T G T C A G A C T T C A G G C T A C G A T G C T A

HOXD4/MA1507.1/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:ATTAMTCATGGT
-NTAATGAN---
T G C A G C A T A C G T G T C A G T A C A G C T T A G C G C T A A C G T C T A G A C T G G C A T
A C G T G A T C A G C T C G T A C G T A A G C T A C T G C T G A A G C T A C G T A C G T A C G T

Dmbx1/MA0883.1/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---ATTAMTCATGGT--
NNNATTAATCCGNTTNA
A C G T A C G T A C G T T G C A G C A T A C G T G T C A G T A C A G C T T A G C G C T A A C G T C T A G A C T G G C A T A C G T A C G T
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A

PH0025.1_Dmbx1/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---ATTAMTCATGGT--
NNNATTAATCCGNTTNA
A C G T A C G T A C G T T G C A G C A T A C G T G T C A G T A C A G C T T A G C G C T A A C G T C T A G A C T G G C A T A C G T A C G T
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A