Information for 2-TAGACACGGA (Motif 12)

A C G T C G T A A C T G C G T A A G T C C G T A A G T C A C T G A C T G C G T A
Reverse Opposite:
A C G T A G T C A G T C A C T G A C G T A C T G A C G T A G T C A C G T C G T A
p-value:1e-3
log p-value:-7.769e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.00%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets12.0 +/- 0.0bp
Average Position of motif in Background79.1 +/- 25.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4/MA1153.1/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TAGACACGGA
TCTAGACA----
A C G T A C G T A C G T C G T A A C T G C G T A A G T C C G T A A G T C A C T G A C T G C G T A
A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T A C G T A C G T A C G T

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:2
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----TAGACACGGA--
CTACTTGGATACGGAAT
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A G T C C G T A A G T C A C T G A C T G C G T A A C G T A C G T
A T G C A C G T T C G A A T G C C A G T G A C T T C A G A C T G C G T A A C G T C G T A G A T C T A C G T A C G C G T A C G T A G C A T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:3
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TAGACACGGA
NNAATTAGTCACGGT
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A G T C C G T A A G T C A C T G A C T G C G T A
A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T

SMAD3/MA0795.1/Jaspar

Match Rank:4
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TAGACACGGA
CGTCTAGACA----
A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A G T C C G T A A G T C A C T G A C T G C G T A
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T A C G T A C G T A C G T

FOXK1/MA0852.2/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TAGACACGGA
AATGTAAACAAGGC
A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A G T C C G T A A G T C A C T G A C T G C G T A
C G T A C T G A C A G T T C A G C G A T T G C A T G C A G T C A A G T C G T C A T C G A T A C G T A C G T G A C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TAGACACGGA
BCAGACWA---
A C G T A C G T C G T A A C T G C G T A A G T C C G T A A G T C A C T G A C T G C G T A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TAGACACGGA-
-TBGCACGCAA
A C G T C G T A A C T G C G T A A G T C C G T A A G T C A C T G A C T G C G T A A C G T
A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

PRDM4/MA1647.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TAGACACGGA-
NAGAAACAGNN
A C G T C G T A A C T G C G T A A G T C C G T A A G T C A C T G A C T G C G T A A C G T
C G A T C G T A C A T G C G T A T C G A C G T A A G T C G C T A A T C G G T C A G A T C

SMAD5/MA1557.1/Jaspar

Match Rank:9
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----TAGACACGGA
TGTCTAGACA----
A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A G T C C G T A A G T C A C T G A C T G C G T A
G A C T T C A G C A G T T G A C A C G T T G C A T A C G G T C A G A T C G C T A A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TAGACACGGA
CCAGACRSVB-
A C G T A C G T C G T A A C T G C G T A A G T C C G T A A G T C A C T G A C T G C G T A
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T