Information for 3-AAATAAGCACAA (Motif 4)

C G T A C G T A C T G A A C G T T G C A C G T A C A T G G T A C C G T A G T A C C G T A G T C A
Reverse Opposite:
A C G T A C G T A C T G A C G T A C T G G T A C C G A T A C G T C G T A A G C T C G A T A C G T
p-value:1e-9
log p-value:-2.238e+01
Information Content per bp:1.868
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif23.2
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets132.4 +/- 46.9bp
Average Position of motif in Background95.0 +/- 60.3bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU3F3/MA0788.1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AAATAAGCACAA-
AAATTAGCATAAT
C G T A C G T A C T G A A C G T T G C A C G T A C A T G G T A C C G T A G T A C C G T A G T C A A C G T
G C T A G C T A C G T A G A C T G C A T C G T A T C A G G T A C T G C A G C A T G C T A G C T A G C A T

MF0005.1_Forkhead_class/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AAATAAGCACAA
AAATAAACA---
C G T A C G T A C T G A A C G T T G C A C G T A C A T G G T A C C G T A G T A C C G T A G T C A
T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A A C G T A C G T A C G T

PB0148.1_Mtf1_2/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AAATAAGCACAA--
AAATAAGAAAAAAC
C G T A C G T A C T G A A C G T T G C A C G T A C A T G G T A C C G T A G T A C C G T A G T C A A C G T A C G T
G C T A C G T A G C T A C A G T G C T A G C T A C A T G G T C A G C T A G C T A G C T A T G C A C G T A T G A C

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:AAATAAGCACAA-
---AAACCACAGC
C G T A C G T A C T G A A C G T T G C A C G T A C A T G G T A C C G T A G T A C C G T A G T C A A C G T
A C G T A C G T A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C

PH0148.1_Pou3f3/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AAATAAGCACAA----
AAAATATGCATAATAAA
A C G T C G T A C G T A C T G A A C G T T G C A C G T A C A T G G T A C C G T A G T A C C G T A G T C A A C G T A C G T A C G T A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

PB0016.1_Foxj1_1/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AAATAAGCACAA---
AAAGTAAACAAAAATT
A C G T C G T A C G T A C T G A A C G T T G C A C G T A C A T G G T A C C G T A G T A C C G T A G T C A A C G T A C G T A C G T
G C T A C G A T G C T A C T A G G A C T G T C A G C T A C G T A G A T C C G T A G T C A C G T A G T C A C G T A C A G T C A G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:7
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AAATAAGCACAA--
--NWAACCACADNN
C G T A C G T A C T G A A C G T T G C A C G T A C A T G G T A C C G T A G T A C C G T A G T C A A C G T A C G T
A C G T A C G T T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer

Match Rank:8
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---AAATAAGCACAA
GCTAARTAAACA---
A C G T A C G T A C G T C G T A C G T A C T G A A C G T T G C A C G T A C A T G G T A C C G T A G T A C C G T A G T C A
A T C G G A T C G C A T T C G A G C T A T C G A G C A T G T C A C G T A G T C A G A T C G C T A A C G T A C G T A C G T

PB0062.1_Sox12_1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AAATAAGCACAA---
-NTTNAGAACAATTA
C G T A C G T A C T G A A C G T T G C A C G T A C A T G G T A C C G T A G T A C C G T A G T C A A C G T A C G T A C G T
A C G T C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:10
Score:0.60
Offset:3
Orientation:forward strand
Alignment:AAATAAGCACAA-
---AAACCACANN
C G T A C G T A C T G A A C G T T G C A C G T A C A T G G T A C C G T A G T A C C G T A G T C A A C G T
A C G T A C G T A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A