Information for 12-CCTCTGGCCG (Motif 23)

A G T C A G T C A C G T A G T C A C G T A C T G A C T G A G T C A G T C A C T G
Reverse Opposite:
A G T C A C T G A C T G A G T C A G T C C G T A A C T G C G T A A C T G A C T G
p-value:1e-3
log p-value:-7.396e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif6.25%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets14.0 +/- 0.0bp
Average Position of motif in Background122.5 +/- 41.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2C(var.2)/MA0814.2/Jaspar

Match Rank:1
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----CCTCTGGCCG
NNCGCCTCAGGCNN
A C G T A C G T A C G T A C G T A G T C A G T C A C G T A G T C A C G T A C T G A C T G A G T C A G T C A C T G
T A G C A G T C T A G C A T C G A T G C A T G C A C G T A T G C T C G A T A C G A T C G T A G C G T A C T G A C

TFAP2A/MA0003.4/Jaspar

Match Rank:2
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CCTCTGGCCG
ATTGCCTCAGGCCA
A C G T A C G T A C G T A C G T A G T C A G T C A C G T A G T C A C G T A C T G A C T G A G T C A G T C A C T G
T G C A A G C T C A G T A T C G T G A C A G T C A G C T T A G C T C G A T A C G A T C G T A G C G T A C T G C A

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CCTCTGGCCG-
TCACCTCTGGGCAG
A C G T A C G T A C G T A G T C A G T C A C G T A G T C A C G T A C T G A C T G A G T C A G T C A C T G A C G T
G A C T G T A C C T G A A G T C G A T C A G C T A T G C G C A T C T A G C T A G C A T G A G T C C G T A A C T G

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CCTCTGGCCG-
SCCTSAGGSCAW
A C G T A G T C A G T C A C G T A G T C A C G T A C T G A C T G A G T C A G T C A C T G A C G T
A T C G A G T C A G T C G A C T A T G C C T G A C T A G A C T G T A C G G T A C C T G A C G A T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CCTCTGGCCG-
TGACCTTTGCCCTA
A C G T A C G T A C G T A G T C A G T C A C G T A G T C A C G T A C T G A C T G A G T C A G T C A C T G A C G T
A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CCTCTGGCCG--
TGACCTTTGCCCTAN
A C G T A C G T A C G T A G T C A G T C A C G T A G T C A C G T A C T G A C T G A G T C A G T C A C T G A C G T A C G T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

NR2C2/MA0504.1/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CCTCTGGCCG--
TGACCTCTGACCCCN
A C G T A C G T A C G T A G T C A G T C A C G T A G T C A C G T A C T G A C T G A G T C A G T C A C T G A C G T A C G T
G A C T T C A G T G C A G T A C A G T C A G C T A G T C G A C T T A C G G T C A G T A C T G A C A G T C A G T C A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCTCTGGCCG
AGCCTCAGGCA-
A C G T A C G T A G T C A G T C A C G T A G T C A C G T A C T G A C T G A G T C A G T C A C T G
G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A A C G T

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:9
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------CCTCTGGCCG-
CCNNACCATCTGGCCTN
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A G T C A C G T A C T G A C T G A G T C A G T C A C T G A C G T
A G T C T A G C T A C G C T A G T C G A G T A C A G T C C G T A A G C T T G A C A G C T C A T G A T C G G T A C G A T C A G C T C A G T

PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer

Match Rank:10
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CCTCTGGCCG--
TGACCTTTGMCCTNB
A C G T A C G T A C G T A G T C A G T C A C G T A G T C A C G T A C T G A C T G A G T C A G T C A C T G A C G T A C G T
G C A T T C A G T G C A G T A C G A T C A G C T A G C T A C G T T A C G T G C A G A T C G A T C G A C T G C T A A C T G