Information for 12-CAGCACGGGT (Motif 26)

A G T C C G T A A C T G T A G C C G T A A G T C A C T G A C T G A C T G C G A T
Reverse Opposite:
C G T A A G T C A G T C T G A C A C T G A C G T A C T G A G T C A C G T A C T G
p-value:1e-5
log p-value:-1.244e+01
Information Content per bp:1.870
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.51%
Number of Background Sequences with motif135.2
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets98.8 +/- 45.6bp
Average Position of motif in Background103.5 +/- 61.9bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.45
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CAGCACGGGT
CACAGCAGGGG-
A C G T A C G T A G T C C G T A A C T G T A G C C G T A A G T C A C T G A C T G A C T G C G A T
T A G C T C G A A G T C T G C A T A C G A G T C T C G A A T C G A C T G T A C G T C A G A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CAGCACGGGT
CACAGCAGGGGG
A C G T A C G T A G T C C G T A A C T G T A G C C G T A A G T C A C T G A C T G A C T G C G A T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0099.1_Zfp691_1/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----CAGCACGGGT--
NNNNTGAGCACTGTNNG
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G T A G C C G T A A G T C A C T G A C T G A C T G C G A T A C G T A C G T
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

Zic2/MA1629.1/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CAGCACGGGT
CTCACAGCAGGGGG
A C G T A C G T A C G T A C G T A G T C C G T A A C T G T A G C C G T A A G T C A C T G A C T G A C T G C G A T
T G A C C A G T T G A C G C T A T A G C G T C A T A C G A G T C C T G A C A T G A T C G C T A G T C A G T C A G

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----CAGCACGGGT
TGAGTCAGCA-----
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G T A G C C G T A A G T C A C T G A C T G A C T G C G A T
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CAGCACGGGT
CCACACAGCAGGAGA
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G T A G C C G T A A G T C A C T G A C T G A C T G C G A T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CAGCACGGGT
CACAGN------
A C G T A C G T A G T C C G T A A C T G T A G C C G T A A G T C A C T G A C T G A C T G C G A T
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

HES6/MA1493.1/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CAGCACGGGT-
-GGCACGTGTT
A G T C C G T A A C T G T A G C C G T A A G T C A C T G A C T G A C T G C G A T A C G T
A C G T A C T G T A C G T A G C C G T A A G T C T A C G A C G T A C T G G C A T G A C T

Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CAGCACGGGT
CHCAGCRGGRGG
A C G T A C G T A G T C C G T A A C T G T A G C C G T A A G T C A C T G A C T G A C T G C G A T
T G A C G T C A A G T C G C T A C T A G A G T C C T G A C A T G A C T G C T A G T A C G T C A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CAGCACGGGT--
DCHCAGCAGGRGGCC
A C G T A C G T A C G T A G T C C G T A A C T G T A G C C G T A A G T C A C T G A C T G A C T G C G A T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C