Information for 14-GCCAGGCAAAGG (Motif 17)

A C T G A G T C A G T C C G T A A C T G A C T G A G T C C G T A C G T A C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C T G A C T G A G T C
p-value:1e-3
log p-value:-8.937e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets64.0 +/- 0.0bp
Average Position of motif in Background181.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCCAGGCAAAGG---
AAACAGACAAAGGAAT
A C G T A C T G A G T C A G T C C G T A A C T G A C T G A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Sox3/MA0514.1/Jaspar

Match Rank:2
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GCCAGGCAAAGG
--AAAACAAAGG
A C T G A G T C A G T C C G T A A C T G A C T G A G T C C G T A C G T A C G T A A C T G A C T G
A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GCCAGGCAAAGG
-CCAGGAACAG-
A C T G A G T C A G T C C G T A A C T G A C T G A G T C C G T A C G T A C G T A A C T G A C T G
A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GCCAGGCAAAGG---
-TAGGGCAAAGGTCA
A C T G A G T C A G T C C G T A A C T G A C T G A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GCCAGGCAAAGG-
--AAGGCAAGTGT
A C T G A G T C A G T C C G T A A C T G A C T G A G T C C G T A C G T A C G T A A C T G A C T G A C G T
A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GCCAGGCAAAGG-
-BMRVACAAWGGV
A C T G A G T C A G T C C G T A A C T G A C T G A G T C C G T A C G T A C G T A A C T G A C T G A C G T
A C G T A T G C T G A C C T G A T A C G C G T A A G T C C G T A C G T A C G T A C T A G T C A G T G C A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCCAGGCAAAGG---
GTAGGGCAAAGGTCA
A C T G A G T C A G T C C G T A A C T G A C T G A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GCCAGGCAAAGG---------
-YCAGGCWCAGTACCAGGCTC
A C T G A G T C A G T C C G T A A C T G A C T G A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G T C T G A C G C T A C T A G C T A G G A T C G C A T A T G C C G T A C T A G C A G T T C G A A T G C A G T C C G T A C A T G C T A G G T A C G A C T A T G C

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:9
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GCCAGGCAAAGG---
---ANGNAAAGGTCA
A C T G A G T C A G T C C G T A A C T G A C T G A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

RARA(var.2)/MA0730.1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GCCAGGCAAAGG---
AGGTCATGCAAAGGTCA
A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C T G A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T
T C G A A C T G A C T G A C G T G A T C T G C A G A C T A T C G A G T C C G T A T C G A T C G A C A T G A C T G A C G T A T G C C T G A