Information for 2-MSAAAGGSKTGY (Motif 2)

G T C A A T G C C G T A C G T A C G T A A C T G A C T G A T G C A C T G A C G T A C T G A G C T
Reverse Opposite:
T C A G A G T C C G T A G T A C A T C G G T A C A G T C A C G T A C G T A C G T A T C G A C G T
p-value:1e-6
log p-value:-1.436e+01
Information Content per bp:1.831
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif27.27%
Number of Background Sequences with motif123.7
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets124.7 +/- 65.1bp
Average Position of motif in Background105.7 +/- 71.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0180.1_Sp4_2/Jaspar

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:MSAAAGGSKTGY----
-CAAAGGCGTGGCCAG
G T C A A T G C C G T A C G T A C G T A A C T G A C T G A T G C A C T G A C G T A C T G A G C T A C G T A C G T A C G T A C G T
A C G T A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-MSAAAGGSKTGY
RACAAWGG-----
A C G T G T C A A T G C C G T A C G T A C G T A A C T G A C T G A T G C A C T G A C G T A C T G A G C T
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---MSAAAGGSKTGY
AAAACAAAGG-----
A C G T A C G T A C G T G T C A A T G C C G T A C G T A C G T A A C T G A C T G A T G C A C T G A C G T A C T G A G C T
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

SOX10/MA0442.2/Jaspar

Match Rank:4
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---MSAAAGGSKTGY
AAAACAAAGAA----
A C G T A C G T A C G T G T C A A T G C C G T A C G T A C G T A A C T G A C T G A T G C A C T G A C G T A C T G A G C T
C T G A C T G A T G C A G C T A A G T C C G T A G C T A G C T A A C T G T C G A T G C A A C G T A C G T A C G T A C G T

SOX4/MA0867.2/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--MSAAAGGSKTGY
GAACAAAGGG----
A C G T A C G T G T C A A T G C C G T A C G T A C G T A A C T G A C T G A T G C A C T G A C G T A C T G A G C T
C T A G T C G A C G T A A T G C T C G A T C G A G C T A C T A G T C A G T C A G A C G T A C G T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:6
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------MSAAAGGSKTGY
AAACAGACAAAGGAAT--
A C G T A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A C G T A C G T A A C T G A C T G A T G C A C T G A C G T A C T G A G C T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---MSAAAGGSKTGY
GGAACAAAGR-----
A C G T A C G T A C G T G T C A A T G C C G T A C G T A C G T A A C T G A C T G A T G C A C T G A C G T A C T G A G C T
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T A C G T

PB0137.1_Irf3_2/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--MSAAAGGSKTGY
GGAGAAAGGTGCGA
A C G T A C G T G T C A A T G C C G T A C G T A C G T A A C T G A C T G A T G C A C T G A C G T A C T G A G C T
C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---MSAAAGGSKTGY
VRRACAAWGG-----
A C G T A C G T A C G T G T C A A T G C C G T A C G T A C G T A A C T G A C T G A T G C A C T G A C G T A C T G A G C T
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer

Match Rank:10
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----MSAAAGGSKTGY
BMRVACAAWGGV----
A C G T A C G T A C G T A C G T G T C A A T G C C G T A C G T A C G T A A C T G A C T G A T G C A C T G A C G T A C T G A G C T
A T G C T G A C C T G A T A C G C G T A A G T C C G T A C G T A C G T A C T A G T C A G T G C A A C G T A C G T A C G T A C G T