Information for 2-CAGCACGTCG (Motif 2)

A G T C C G T A A C T G A G T C C G T A A G T C A C T G A C G T A G T C A C T G
Reverse Opposite:
A G T C A C T G C G T A A G T C A C T G A C G T A C T G A G T C A C G T A C T G
p-value:1e-4
log p-value:-1.099e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets174.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF1A/MA1106.1/Jaspar

Match Rank:1
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:CAGCACGTCG
NNGCACGTNC
A G T C C G T A A C T G A G T C C G T A A G T C A C T G A C G T A G T C A C T G
T A C G T A C G C A T G A G T C T C G A A G T C C T A G G A C T T C G A A T G C

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:2
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:CAGCACGTCG
--GCACGTNC
A G T C C G T A A C T G A G T C C G T A A G T C A C T G A C G T A G T C A C T G
A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:3
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:CAGCACGTCG
-BGCACGTA-
A G T C C G T A A C T G A G T C C G T A A G T C A C T G A C G T A G T C A C T G
A C G T A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:4
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:CAGCACGTCG
--GCACGTAY
A G T C C G T A A C T G A G T C C G T A A G T C A C T G A C G T A G T C A C T G
A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:5
Score:0.71
Offset:2
Orientation:forward strand
Alignment:CAGCACGTCG--
--GCACGTACCC
A G T C C G T A A C T G A G T C C G T A A G T C A C T G A C G T A G T C A C T G A C G T A C G T
A C G T A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

MYC/MA0147.3/Jaspar

Match Rank:6
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CAGCACGTCG--
NNGCACGTGGNN
A G T C C G T A A C T G A G T C C G T A A G T C A C T G A C G T A G T C A C T G A C G T A C G T
T A C G T C A G T A C G T A G C T C G A A G T C T C A G G A C T A C T G A T C G A T G C A T G C

MAX::MYC/MA0059.1/Jaspar

Match Rank:7
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CAGCACGTCG-
GACCACGTGGT
A G T C C G T A A C T G A G T C C G T A A G T C A C T G A C G T A G T C A C T G A C G T
C T A G C T G A T A C G G T A C C G T A A G T C C T A G A G C T A C T G A C T G G A C T

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:8
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CAGCACGTCG
CACAGCAGGGG-
A C G T A C G T A G T C C G T A A C T G A G T C C G T A A G T C A C T G A C G T A G T C A C T G
T A G C T C G A A G T C T G C A T A C G A G T C T C G A A T C G A C T G T A C G T C A G A C G T

MAX/MA0058.3/Jaspar

Match Rank:9
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CAGCACGTCG-
-NNCACGTGGT
A G T C C G T A A C T G A G T C C G T A A G T C A C T G A C G T A G T C A C T G A C G T
A C G T C T G A T A C G T G A C C T G A A G T C T C A G G A C T A C T G A C T G A C G T

n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CAGCACGTCG
NNCCACGTGG
A G T C C G T A A C T G A G T C C G T A A G T C A C T G A C G T A G T C A C T G
T A C G T C G A T A G C A G T C C G T A A G T C C T A G G C A T A C T G A T C G