Information for 12-GTAAAATTTAAG (Motif 17)

A C T G A C G T C G T A C G T A C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T C G T A A G T C
p-value:1e-4
log p-value:-9.666e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets142.0 +/- 0.0bp
Average Position of motif in Background37.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GTAAAATTTAAG
GGTTAAACATTAA-
A C G T A C G T A C T G A C G T C G T A C G T A C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C T G
C T A G C T A G G C A T C G A T C T G A G T C A G C T A A T G C C G T A C A G T G A C T C G T A T G C A A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.61
Offset:-7
Orientation:forward strand
Alignment:-------GTAAAATTTAAG
AAACCTCGTAAAATTT---
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T C G T A C G T A C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C T G
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T A C G T A C G T A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.60
Offset:-7
Orientation:forward strand
Alignment:-------GTAAAATTTAAG
AAAGCTCGTAAAATTT---
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T C G T A C G T A C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C T G
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T A C G T A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:4
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------GTAAAATTTAAG
AATGCAATAAAATTTAT-
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T C G T A C G T A C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C T G
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T A C G T

PH0114.1_Nkx2-5/Jaspar

Match Rank:5
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GTAAAATTTAAG-------
---AAATTCAAGTGGNTTN
A C T G A C G T C G T A C G T A C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A

PH0077.1_Hoxd12/Jaspar

Match Rank:6
Score:0.59
Offset:-7
Orientation:forward strand
Alignment:-------GTAAAATTTAAG
CAAGGTCGTAAAATCTT--
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T C G T A C G T A C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C T G
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T A C G T A C G T

Hoxa11/MA0911.1/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GTAAAATTTAAG
GGTCGTAAAATT----
A C G T A C G T A C G T A C G T A C T G A C G T C G T A C G T A C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C T G
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T A C G T A C G T A C G T A C G T

HOXC12/MA0906.1/Jaspar

Match Rank:8
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GTAAAATTTAAG
GGTCGTAAAAA-----
A C G T A C G T A C G T A C G T A C T G A C G T C G T A C G T A C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C T G
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A A C G T A C G T A C G T A C G T A C G T

HOXC9/MA0485.2/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GTAAAATTTAAG
GTCGTAAAAT-----
A C G T A C G T A C G T A C T G A C G T C G T A C G T A C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C T G
T C A G A G C T A G T C C T A G A C G T C G T A C G T A G T C A G C T A G A C T A C G T A C G T A C G T A C G T A C G T

HOXD11/MA0908.1/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GTAAAATTTAAG
GTCGTAAAAA-----
A C G T A C G T A C G T A C T G A C G T C G T A C G T A C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C T G
T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A A C G T A C G T A C G T A C G T A C G T