Information for 2-GRAGWTATGSTA (Motif 2)

A C T G C T A G C G T A A C T G G C A T A G C T C G T A A C G T A C T G A T C G A C G T C G T A
Reverse Opposite:
A C G T C G T A A T G C A G T C C G T A A C G T C T G A C G A T A G T C A C G T A G T C A G T C
p-value:1e-7
log p-value:-1.625e+01
Information Content per bp:1.887
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif40.0
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets163.7 +/- 25.9bp
Average Position of motif in Background85.5 +/- 76.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OLIG3/MA0827.1/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GRAGWTATGSTA
-ANCATATGGT-
A C T G C T A G C G T A A C T G G C A T A G C T C G T A A C G T A C T G A T C G A C G T C G T A
A C G T C T G A T G C A G T A C C T G A A C G T T G C A G A C T C A T G A C T G A G C T A C G T

OLIG1/MA0826.1/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GRAGWTATGSTA
-AACATATGTT-
A C T G C T A G C G T A A C T G G C A T A G C T C G T A A C G T A C T G A T C G A C G T C G T A
A C G T T C G A T G C A G T A C C T G A A C G T T G C A G C A T A C T G A C G T G A C T A C G T

OLIG2/MA0678.1/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GRAGWTATGSTA
-ACCATATGGT-
A C T G C T A G C G T A A C T G G C A T A G C T C G T A A C G T A C T G A T C G A C G T C G T A
A C G T C T G A T G A C G T A C C T G A A C G T C G T A G A C T A C T G A C T G G A C T A C G T

BHLHE23/MA0817.1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GRAGWTATGSTA
AAACATATGTTT
A C T G C T A G C G T A A C T G G C A T A G C T C G T A A C G T A C T G A T C G A C G T C G T A
C G T A T C G A T G C A G T A C C T G A A G C T T G C A G A C T A C T G A C G T G A C T C G A T

POU3F2/MA0787.1/Jaspar

Match Rank:5
Score:0.61
Offset:4
Orientation:forward strand
Alignment:GRAGWTATGSTA----
----TTATGCAAATTA
A C T G C T A G C G T A A C T G G C A T A G C T C G T A A C G T A C T G A T C G A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A

BHLHE22/MA0818.1/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GRAGWTATGSTA
-ANCATATGGT-
A C T G C T A G C G T A A C T G G C A T A G C T C G T A A C G T A C T G A T C G A C G T C G T A
A C G T C T G A T C G A T G A C C T G A A C G T C T G A G A C T A C T G A C T G A G C T A C G T

POU3F1/MA0786.1/Jaspar

Match Rank:7
Score:0.61
Offset:4
Orientation:forward strand
Alignment:GRAGWTATGSTA----
----TTATGCAAATTA
A C T G C T A G C G T A A C T G G C A T A G C T C G T A A C G T A C T G A T C G A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

POU3F4/MA0789.1/Jaspar

Match Rank:8
Score:0.61
Offset:5
Orientation:forward strand
Alignment:GRAGWTATGSTA--
-----TATGCAAAT
A C T G C T A G C G T A A C T G G C A T A G C T C G T A A C G T A C T G A T C G A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T

GATA4/MA0482.2/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GRAGWTATGSTA
NNAGATAAGGNN
A C T G C T A G C G T A A C T G G C A T A G C T C G T A A C G T A C T G A T C G A C G T C G T A
C G T A T C G A C G T A T C A G C G T A C A G T C G T A C G T A C T A G T C A G C G T A C G T A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GRAGWTATGSTA-----
-----TATGCWAATBAV
A C T G C T A G C G T A A C T G G C A T A G C T C G T A A C G T A C T G A T C G A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G