Information for 5-TTAGTATTCG (Motif 9)

A C G T A C G T C G T A A C T G A C G T C G T A A C G T A C G T A G T C A C T G
Reverse Opposite:
A G T C A C T G C G T A C G T A A C G T C G T A A G T C A C G T C G T A C G T A
p-value:1e-3
log p-value:-9.074e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets123.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0106.1_Arid5a_2/Jaspar

Match Rank:1
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TTAGTATTCG---
TNNTTTCGTATTNNANN
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A A C G T A C G T A G T C A C T G A C G T A C G T A C G T
A C G T A G C T T C G A G C A T G A C T G A C T A T G C A T C G A C G T T G C A A C G T C G A T A C T G G C A T C T G A G A C T T A C G

IRF7/MA0772.1/Jaspar

Match Rank:2
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---TTAGTATTCG-
ANTTTCGCTTTCGN
A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A A C G T A C G T A G T C A C T G A C G T
C G T A A G T C C G A T A C G T C A G T G A T C C T A G A G T C A C G T C G A T A C G T T G A C A C T G C A G T

PB0186.1_Tcf3_2/Jaspar

Match Rank:3
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TTAGTATTCG---
NNTTTNTTTTNGNNN
A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A A C G T A C G T A G T C A C T G A C G T A C G T A C G T
C G T A C G A T A G C T C G A T A C G T C G A T C G A T C G A T A G C T G C A T T A G C A T C G T A C G A T G C G A C T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----TTAGTATTCG
BTVATTWGCATA--
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A A C G T A C G T A G T C A C T G
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:5
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TTAGTATTCG
NNTNNCAATATTAG
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A A C G T A C G T A G T C A C T G
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0002.1_Arid5a_1/Jaspar

Match Rank:6
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TTAGTATTCG
NNTNNCAATATTAG
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A A C G T A C G T A G T C A C T G
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

SOX12/MA1561.1/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TTAGTATTCG--
-NATTGTTCGGT
A C G T A C G T C G T A A C T G A C G T C G T A A C G T A C G T A G T C A C T G A C G T A C G T
A C G T A T G C C T G A A C G T A C G T C T A G A G C T A C G T G T A C C T A G C A T G C A G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TTAGTATTCG
ATGAATATTC-
A C G T A C G T A C G T C G T A A C T G A C G T C G T A A C G T A C G T A G T C A C T G
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TTAGTATTCG
CTCATTTGCATW--
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A A C G T A C G T A G T C A C T G
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A A C G T A C G T

SOX14/MA1562.1/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:TTAGTATTCG-
-CATTGTTCGG
A C G T A C G T C G T A A C T G A C G T C G T A A C G T A C G T A G T C A C T G A C G T
A C G T G T A C T G C A C A G T A C G T T C A G C G A T G C A T G T A C C T A G A C T G