Information for 2-GTAAGCCGGC (Motif 2)

A C T G A C G T C G T A C G T A A C T G A G T C A G T C A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C A C T G A C T G A G T C A C G T A C G T C G T A A G T C
p-value:1e-4
log p-value:-1.074e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets102.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OTX1/MA0711.1/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GTAAGCCGGC
TTAATCCG--
A C T G A C G T C G T A C G T A A C T G A G T C A G T C A C T G A C T G A G T C
G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GTAAGCCGGC
-TAATCCCN-
A C T G A C G T C G T A C G T A A C T G A G T C A G T C A C T G A C T G A G T C
A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T

PROX1/MA0794.1/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GTAAGCCGGC---
-TAAGGCGTCTTG
A C T G A C G T C G T A C G T A A C T G A G T C A G T C A C T G A C T G A G T C A C G T A C G T A C G T
A C G T A G C T T C G A G T C A T C A G C T A G G T A C C T A G A G C T G A T C C G A T G A C T T C A G

RHOXF1/MA0719.1/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GTAAGCCGGC
ATAATCCC--
A C T G A C G T C G T A C G T A A C T G A G T C A G T C A C T G A C T G A G T C
G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T A C G T

PITX1/MA0682.2/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GTAAGCCGGC
CTAATCCC--
A C T G A C G T C G T A C G T A A C T G A G T C A G T C A C T G A C T G A G T C
G A T C A C G T C G T A C G T A A C G T G T A C A G T C G T A C A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GTAAGCCGGC
GCTAATCC---
A C G T A C T G A C G T C G T A C G T A A C T G A G T C A G T C A C T G A C T G A G T C
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T

Dmbx1/MA0883.1/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GTAAGCCGGC---
NNNATTAATCCGNTTNA
A C G T A C G T A C G T A C G T A C T G A C G T C G T A C G T A A C T G A G T C A G T C A C T G A C T G A G T C A C G T A C G T A C G T
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A

PH0025.1_Dmbx1/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GTAAGCCGGC---
NNNATTAATCCGNTTNA
A C G T A C G T A C G T A C G T A C T G A C G T C G T A C G T A A C T G A G T C A G T C A C T G A C T G A G T C A C G T A C G T A C G T
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A

PITX3/MA0714.1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GTAAGCCGGC
CTTAATCCC--
A C G T A C T G A C G T C G T A C G T A A C T G A G T C A G T C A C T G A C T G A G T C
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T A C G T

PB0185.1_Tcf1_2/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GTAAGCCGGC---
NNTAATCCNGNCNN
A C G T A C T G A C G T C G T A C G T A A C T G A G T C A G T C A C T G A C T G A G T C A C G T A C G T A C G T
G A T C G T A C G C A T T G C A G T C A G A C T G T A C A G T C T C A G A T C G C T A G A G T C T G C A C G T A