Information for 8-GCATAATCAT (Motif 27)

A C T G A G T C C G T A A C G T C G T A C G T A A C G T A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G C G T A A C G T A C G T C G T A A C G T A C T G A G T C
p-value:1e-3
log p-value:-7.043e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif15.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets196.0 +/- 0.0bp
Average Position of motif in Background83.8 +/- 46.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GCATAATCAT
GHATATKCAT
A C T G A G T C C G T A A C G T C G T A C G T A A C G T A G T C C G T A A C G T
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GCATAATCAT
GAATATTCAT
A C T G A G T C C G T A A C G T C G T A C G T A A C G T A G T C C G T A A C G T
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GCATAATCAT---
ATGAATATTCATGAG
A C G T A C G T A C T G A G T C C G T A A C G T C G T A C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

EVX1/MA0887.1/Jaspar

Match Rank:4
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GCATAATCAT-
-GNTAATTANN
A C T G A G T C C G T A A C G T C G T A C G T A A C G T A G T C C G T A A C G T A C G T
A C G T A T C G T A G C G A C T C T G A T G C A A G C T A G C T C T G A A T G C A G T C

EVX2/MA0888.1/Jaspar

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GCATAATCAT-
-NNTAATTANN
A C T G A G T C C G T A A C G T C G T A C G T A A C G T A G T C C G T A A C G T A C G T
A C G T T A C G A T G C G A C T T C G A T G C A A G C T A C G T C T G A A T G C A T G C

HLF/MA0043.3/Jaspar

Match Rank:6
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----GCATAATCAT
NNGTTGCATAACNN-
A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T C G T A C G T A A C G T A G T C C G T A A C G T
G C A T C A G T T C A G G A C T C A G T C T A G G A T C T C G A G A C T G T C A C G T A A G T C G T C A G C T A A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:7
Score:0.64
Offset:-7
Orientation:forward strand
Alignment:-------GCATAATCAT
AAAATATGCATAATAAA
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T C G T A C G T A A C G T A G T C C G T A A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:8
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GCATAATCAT
--YTAATCCY
A C T G A G T C C G T A A C G T C G T A C G T A A C G T A G T C C G T A A C G T
A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C

NFIL3/MA0025.2/Jaspar

Match Rank:9
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----GCATAATCAT
NNATTGCATAANN--
A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T C G T A C G T A A C G T A G T C C G T A A C G T
C G T A C A G T T C G A G C A T C A G T C T A G G A T C C T G A G A C T G T C A C G T A A G C T G C T A A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:10
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GCATAATCAT
--CCAATCAA
A C T G A G T C C G T A A C G T C G T A C G T A A C G T A G T C C G T A A C G T
A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A