Information for 3-CAAGTAATCTAT (Motif 5)

A G T C C G T A C G T A A C T G A C G T C G T A C G T A A C G T A G T C A C G T C G T A A C G T
Reverse Opposite:
C G T A A C G T C G T A A C T G C G T A A C G T A C G T C G T A A G T C A C G T A C G T A C T G
p-value:1e-4
log p-value:-1.060e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets164.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CUX1/MA0754.1/Jaspar

Match Rank:1
Score:0.66
Offset:4
Orientation:forward strand
Alignment:CAAGTAATCTAT--
----TAATCGATAA
A G T C C G T A C G T A A C T G A C G T C G T A C G T A A C G T A G T C A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T C T G A C T G A A G C T A G T C T C A G C G T A G C A T T G C A G T C A

CUX2/MA0755.1/Jaspar

Match Rank:2
Score:0.65
Offset:4
Orientation:forward strand
Alignment:CAAGTAATCTAT--
----TAATCGATAA
A G T C C G T A C G T A A C T G A C G T C G T A C G T A A C G T A G T C A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C T G A C T G A A G C T A G T C C T A G C G T A G C A T G C T A G C T A

GATA1/MA0035.4/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CAAGTAATCTAT
-TTCTAATCTAT
A G T C C G T A C G T A A C T G A C G T C G T A C G T A A C G T A G T C A C G T C G T A A C G T
A C G T C G A T G C A T G T A C C G A T C G T A G C T A G C A T G T A C G C A T C G T A G C A T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:4
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CAAGTAATCTAT
--HNRAATCAAT
A G T C C G T A C G T A A C T G A C G T C G T A C G T A A C G T A G T C A C G T C G T A A C G T
A C G T A C G T G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T

PAX3/MA0780.1/Jaspar

Match Rank:5
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CAAGTAATCTAT--
----TAATCGATTA
A G T C C G T A C G T A A C T G A C G T C G T A C G T A A C G T A G T C A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T G A T C G A G A C T A G T C T C A G T C G A C A G T A G C T G C T A

PAX7/MA0680.1/Jaspar

Match Rank:6
Score:0.61
Offset:4
Orientation:forward strand
Alignment:CAAGTAATCTAT--
----TAATCGATTA
A G T C C G T A C G T A A C T G A C G T C G T A C G T A A C G T A G T C A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T T G C A G T C A G A C T A G T C T C A G C G T A C G A T G A C T G C T A

ONECUT2/MA0756.1/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CAAGTAATCTAT---
-AAAAAATCGATAAT
A G T C C G T A C G T A A C T G A C G T C G T A C G T A A C G T A G T C A C G T C G T A A C G T A C G T A C G T A C G T
A C G T T C G A C T G A C G T A G C T A C T G A C T G A A C G T G T A C T C A G G C T A G C A T C G T A G C T A G C A T

Hmx2/MA0897.1/Jaspar

Match Rank:8
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CAAGTAATCTAT
ACAAGCAATTAAAGAAT
A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C G T C G T A C G T A A C G T A G T C A C G T C G T A A C G T
T C G A T A G C T G C A C T G A T C A G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A T C A G T C G A C T G A C A G T

PH0042.1_Hmx2/Jaspar

Match Rank:9
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CAAGTAATCTAT
ACAAGCAATTAAAGAAT
A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C G T C G T A C G T A A C G T A G T C A C G T C G T A A C G T
T C G A T A G C T G C A C T G A T C A G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A T C A G T C G A C T G A C A G T

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:10
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CAAGTAATCTAT--
----TAATCAATTA
A G T C C G T A C G T A A C T G A C G T C G T A C G T A A C G T A G T C A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A