Information for 10-AGTAGTCACTCC (Motif 15)

C G T A A C T G A C G T C G T A A C T G C G A T A G T C C G T A A G T C A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A A C T G A C G T A C T G C G T A A G T C A C G T C G T A A G T C A C G T
p-value:1e-7
log p-value:-1.684e+01
Information Content per bp:1.969
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets95.7 +/- 44.0bp
Average Position of motif in Background142.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PKNOX1/MA0782.2/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AGTAGTCACTCC--
NNGCTGTCACTCANN
A C G T C G T A A C T G A C G T C G T A A C T G C G A T A G T C C G T A A G T C A C G T A G T C A G T C A C G T A C G T
G A C T T C G A A T C G T G A C G C A T C T A G G A C T T A G C G C T A T G A C G A C T A G T C G C T A C G T A G C T A

Pax2/MA0067.1/Jaspar

Match Rank:2
Score:0.60
Offset:3
Orientation:forward strand
Alignment:AGTAGTCACTCC
---AGTCACGC-
C G T A A C T G A C G T C G T A A C T G C G A T A G T C C G T A A G T C A C G T A G T C A G T C
A C G T A C G T A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.60
Offset:4
Orientation:forward strand
Alignment:AGTAGTCACTCC--
----ATCACCCCAT
C G T A A C T G A C G T C G T A A C T G C G A T A G T C C G T A A G T C A C G T A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T T C G A G C A T A T G C C T G A A T G C T A G C A G T C G T A C T C G A A G C T

MGA/MA0801.1/Jaspar

Match Rank:4
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:AGTAGTCACTCC-
-----TCACACCT
C G T A A C T G A C G T C G T A A C T G C G A T A G T C C G T A A G T C A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AGTAGTCACTCC--
--CNGTCACGCCAC
C G T A A C T G A C G T C G T A A C T G C G A T A G T C C G T A A G T C A C G T A G T C A G T C A C G T A C G T
A C G T A C G T G T A C C T A G T C A G A G C T T A G C C G T A A T G C T A C G A G T C G T A C G T C A A G T C

SREBF2/MA0596.1/Jaspar

Match Rank:6
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:AGTAGTCACTCC--
----ATCACCCCAT
C G T A A C T G A C G T C G T A A C T G C G A T A G T C C G T A A G T C A C G T A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T C T G A A C G T A G T C C G T A A T G C T A G C A G T C A T G C C G T A A G C T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:7
Score:0.57
Offset:3
Orientation:forward strand
Alignment:AGTAGTCACTCC--
---AGCCACTCAAG
C G T A A C T G A C G T C G T A A C T G C G A T A G T C C G T A A G T C A C G T A G T C A G T C A C G T A C G T
A C G T A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

TBX15/MA0803.1/Jaspar

Match Rank:8
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:AGTAGTCACTCC-
-----TCACACCT
C G T A A C T G A C G T C G T A A C T G C G A T A G T C C G T A A G T C A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T G A C T C G A A T G C T G C A A G T C G A T C G A C T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:9
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AGTAGTCACTCC
NNAATTAGTCACGGT
A C G T A C G T A C G T C G T A A C T G A C G T C G T A A C T G C G A T A G T C C G T A A G T C A C G T A G T C A G T C
A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:10
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:AGTAGTCACTCC-
---MRSCACTYAA
C G T A A C T G A C G T C G T A A C T G C G A T A G T C C G T A A G T C A C G T A G T C A G T C A C G T
A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A