Information for 3-HVGTTDATAACB (Motif 3)

G A C T T A C G A C T G C G A T C G A T C G T A C G T A C G A T C T G A G T C A A G T C A C T G
Reverse Opposite:
T A G C A C T G A C G T A G C T C G T A C G A T G A C T C G T A C G T A A G T C A G T C C G T A
p-value:1e-5
log p-value:-1.242e+01
Information Content per bp:1.693
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif40.00%
Number of Background Sequences with motif1084.8
Percentage of Background Sequences with motif1.20%
Average Position of motif in Targets97.3 +/- 36.1bp
Average Position of motif in Background100.0 +/- 88.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0073.1_Hoxc9/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-HVGTTDATAACB---
NNAATTAATGACCNNN
A C G T G A C T T A C G A C T G C G A T C G A T C G T A C G T A C G A T C T G A G T C A A G T C A C T G A C G T A C G T A C G T
T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C

PH0012.1_Cdx1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-HVGTTDATAACB---
NAATTTTATTACCTNN
A C G T G A C T T A C G A C T G C G A T C G A T C G T A C G T A C G A T C T G A G T C A A G T C A C T G A C G T A C G T A C G T
C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A

PH0065.1_Hoxc10/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-HVGTTDATAACB---
ANNTTTTACGACNTNN
A C G T G A C T T A C G A C T G C G A T C G A T C G T A C G T A C G A T C T G A G T C A A G T C A C T G A C G T A C G T A C G T
T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A

HOXB7/MA1501.1/Jaspar

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:HVGTTDATAACB
--GNTAATTACC
G A C T T A C G A C T G C G A T C G A T C G T A C G T A C G A T C T G A G T C A A G T C A C T G
A C G T A C G T A T C G A G C T A G C T C G T A G T C A A C G T A C G T T C G A G T A C A G T C

PH0066.1_Hoxc11/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-HVGTTDATAACB---
NNNTTTTACGACNTTN
A C G T G A C T T A C G A C T G C G A T C G A T C G T A C G T A C G A T C T G A G T C A A G T C A C T G A C G T A C G T A C G T
G T A C G A C T C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C T G A

PH0013.1_Cdx2/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-HVGTTDATAACB---
NAATTTTATTACCNNN
A C G T G A C T T A C G A C T G C G A T C G A T C G T A C G T A C G A T C T G A G T C A A G T C A C T G A C G T A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

FOXN3/MA1489.1/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:forward strand
Alignment:HVGTTDATAACB
--GTAAACAA--
G A C T T A C G A C T G C G A T C G A T C G T A C G T A C G A T C T G A G T C A A G T C A C T G
A C G T A C G T A C T G A C G T C G T A C G T A C G T A A G T C C G T A C G T A A C G T A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:HVGTTDATAACB
-NTTTTACGAC-
G A C T T A C G A C T G C G A T C G A T C G T A C G T A C G A T C T G A G T C A A G T C A C T G
A C G T C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C A C G T

NR2F1(var.3)/MA1538.1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-HVGTTDATAACB--
AAGGTCATTGACCTT
A C G T G A C T T A C G A C T G C G A T C G A T C G T A C G T A C G A T C T G A G T C A A G T C A C T G A C G T A C G T
C T G A C T G A A C T G C T A G A C G T A G T C T C G A A C G T A G C T T C A G G T C A A G T C T G A C G A C T G A C T

HOXA6/MA1497.1/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:HVGTTDATAACB
--NNTAATTACN
G A C T T A C G A C T G C G A T C G A T C G T A C G T A C G A T C T G A G T C A A G T C A C T G
A C G T A C G T T A C G G A C T G C A T G C T A C G T A A G C T C A G T T C G A T A G C T G A C