Information for 11-CCCAGCTGCTCC (Motif 17)

A G T C A G T C A G T C C G T A A C T G A G T C A C G T A C T G A G T C A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A A C T G A G T C C G T A A C T G A G T C A C G T A C T G A C T G A C T G
p-value:1e-7
log p-value:-1.831e+01
Information Content per bp:1.530
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets101.8 +/- 26.8bp
Average Position of motif in Background126.3 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)3.7
Multiplicity (# of sites on avg that occur together)2.80
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0003.1_Ascl2_1/Jaspar

Match Rank:1
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---CCCAGCTGCTCC--
CTCAGCAGCTGCTACTG
A C G T A C G T A C G T A G T C A G T C A G T C C G T A A C T G A G T C A C G T A C T G A G T C A C G T A G T C A G T C A C G T A C G T
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G

NHLH1/MA0048.2/Jaspar

Match Rank:2
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CCCAGCTGCTCC
CGCAGCTGCG--
A G T C A G T C A G T C C G T A A C T G A G T C A C G T A C T G A G T C A C G T A G T C A G T C
T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G A C G T A C G T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:3
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:CCCAGCTGCTCC
-CCAGCTGTTN-
A G T C A G T C A G T C C G T A A C T G A G T C A C G T A C T G A G T C A C G T A G T C A G T C
A C G T T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CCCAGCTGCTCC
-NCAGCTGCTG-
A G T C A G T C A G T C C G T A A C T G A G T C A C G T A C T G A G T C A C G T A G T C A G T C
A C G T T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G A C G T

Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer

Match Rank:5
Score:0.73
Offset:1
Orientation:forward strand
Alignment:CCCAGCTGCTCC
-MCAGCTGBYH-
A G T C A G T C A G T C C G T A A C T G A G T C A C G T A C T G A G T C A C G T A G T C A G T C
A C G T T G A C A G T C C G T A A C T G G T A C A C G T A C T G A C G T G A C T G A T C A C G T

BHLHE22(var.2)/MA1635.1/Jaspar

Match Rank:6
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:CCCAGCTGCTCC
NNCAGCTGNN--
A G T C A G T C A G T C C G T A A C T G A G T C A C G T A C T G A G T C A C G T A G T C A G T C
A T G C T A C G A T G C T C G A A T C G T A G C A G C T T C A G A T G C T A C G A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:CCCAGCTGCTCC
--CAGCTGNT--
A G T C A G T C A G T C C G T A A C T G A G T C A C G T A C T G A G T C A C G T A G T C A G T C
A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:8
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CCCAGCTGCTCC
AGCAGCTGCTNN
A G T C A G T C A G T C C G T A A C T G A G T C A C G T A C T G A G T C A C G T A G T C A G T C
C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:9
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--CCCAGCTGCTCC
NNVVCAGCTGBN--
A C G T A C G T A G T C A G T C A G T C C G T A A C T G A G T C A C G T A C T G A G T C A C G T A G T C A G T C
C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T A C G T A C G T

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:10
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CCCAGCTGCTCC
NNACAGCTGC---
A C G T A G T C A G T C A G T C C G T A A C T G A G T C A C G T A C T G A G T C A C G T A G T C A G T C
C G T A T G A C T C G A A G T C C G T A A T C G A T G C A C G T A C T G A G T C A C G T A C G T A C G T