Information for 10-GCCTWAGT (Motif 28)

A C T G A G T C G A T C G C A T C G A T G T C A A C T G A C G T
Reverse Opposite:
G T C A A G T C A C G T C G T A C G T A C T A G A C T G A G T C
p-value:1e-5
log p-value:-1.240e+01
Information Content per bp:1.816
Number of Target Sequences with motif59.0
Percentage of Target Sequences with motif5.49%
Number of Background Sequences with motif1380.3
Percentage of Background Sequences with motif2.91%
Average Position of motif in Targets107.1 +/- 52.2bp
Average Position of motif in Background99.2 +/- 57.8bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3-1/MA0124.2/Jaspar

Match Rank:1
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GCCTWAGT---
--TTAAGTGGT
A C T G A G T C G A T C G C A T C G A T G T C A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:2
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GCCTWAGT----
--TTRAGTGSYK
A C T G A G T C G A T C G C A T C G A T G T C A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:3
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GCCTWAGT----
--TTAAGTGCTT
A C T G A G T C G A T C G C A T C G A T G T C A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

ISL2/MA0914.1/Jaspar

Match Rank:4
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GCCTWAGT--
--TTAAGTGC
A C T G A G T C G A T C G C A T C G A T G T C A A C T G A C G T A C G T A C G T
A C G T A C G T G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GCCTWAGT---
-CTYRAGTGSY
A C T G A G T C G A T C G C A T C G A T G T C A A C T G A C G T A C G T A C G T A C G T
A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GCCTWAGT-------
NTNNTTAAGTGGNTNAN
A C G T A C G T A C T G A G T C G A T C G C A T C G A T G T C A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

NKX2-3/MA0672.1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GCCTWAGT---
-NTCAAGTGGN
A C T G A G T C G A T C G C A T C G A T G T C A A C T G A C G T A C G T A C G T A C G T
A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCCTWAGT--
AGCCTCAGGCA
A C G T A C T G A G T C G A T C G C A T C G A T G T C A A C T G A C G T A C G T A C G T
G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A

PH0004.1_Nkx3-2/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GCCTWAGT-------
NTNNTTAAGTGGTTANN
A C G T A C G T A C T G A G T C G A T C G C A T C G A T G T C A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G

HNF4G/MA0484.2/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GCCTWAGT-----
TCCAAAGTCCAGA
A C T G A G T C G A T C G C A T C G A T G T C A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A G T C G A T C T C G A T C G A C T G A A C T G C A G T G A T C G A T C C G T A T C A G C T G A