Information for 3-ACAATGGCTTTC (Motif 3)

C G T A A G T C C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A G T C
Reverse Opposite:
A C T G C G T A C G T A C G T A A C T G A G T C A G T C C G T A A C G T A C G T A C T G A C G T
p-value:1e-4
log p-value:-9.985e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets134.0 +/- 0.0bp
Average Position of motif in Background181.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX13/MA1120.1/Jaspar

Match Rank:1
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--ACAATGGCTTTC
AAACAATGGCA---
A C G T A C G T C G T A A G T C C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A G T C
C T G A T C G A C T G A A G T C G C T A C T G A G C A T C T A G T C A G T G A C G C T A A C G T A C G T A C G T

SOX2/MA0143.4/Jaspar

Match Rank:2
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--ACAATGGCTTTC
AAACAATGGAA---
A C G T A C G T C G T A A G T C C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A G T C
C G T A C G T A G C T A G A T C G C T A T C G A C G A T C T A G C T A G C G T A G C T A A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---ACAATGGCTTTC
VRAACAATGG-----
A C G T A C G T A C G T C G T A A G T C C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A G T C
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer

Match Rank:4
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----ACAATGGCTTTC
VVRRAACAATGG-----
A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A G T C
T G A C T A G C T C A G T C G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:5
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--ACAATGGCTTTC
RAACAATGGN----
A C G T A C G T C G T A A G T C C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A G T C
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--ACAATGGCTTTC
GAACAATGGN----
A C G T A C G T C G T A A G T C C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A G T C
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:7
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--ACAATGGCTTTC
GAACAATGG-----
A C G T A C G T C G T A A G T C C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A G T C
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-ACAATGGCTTTC
RACAAWGG-----
A C G T C G T A A G T C C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A G T C
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:9
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----ACAATGGCTTTC
AATGAACAATGGAATT-
A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A G T C
C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T A C G T

Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer

Match Rank:10
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----ACAATGGCTTTC
BMRVACAAWGGV----
A C G T A C G T A C G T A C G T C G T A A G T C C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A G T C
A T G C T G A C C T G A T A C G C G T A A G T C C G T A C G T A C G T A C T A G T C A G T G C A A C G T A C G T A C G T A C G T