Information for 1-YCGCTGTC (Motif 1)

A G C T A G T C A C T G G T A C G A C T A T C G A C G T A G T C
Reverse Opposite:
C T A G G T C A A T G C C T G A A C T G G T A C A C T G T C G A
p-value:1e-38
log p-value:-8.819e+01
Information Content per bp:1.842
Number of Target Sequences with motif481.0
Percentage of Target Sequences with motif3.91%
Number of Background Sequences with motif766.1
Percentage of Background Sequences with motif2.04%
Average Position of motif in Targets103.4 +/- 60.9bp
Average Position of motif in Background99.7 +/- 55.4bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.72
Offset:2
Orientation:forward strand
Alignment:YCGCTGTC
--GCTGTG
A G C T A G T C A C T G G T A C G A C T A T C G A C G T A G T C
A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

PH0158.1_Rhox11_2/Jaspar

Match Rank:2
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---YCGCTGTC------
AGGACGCTGTAAAGGGA
A C G T A C G T A C G T A G C T A G T C A C T G G T A C G A C T A T C G A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

MEIS2/MA0774.1/Jaspar

Match Rank:3
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:YCGCTGTC--
--GCTGTCAA
A G C T A G T C A C T G G T A C G A C T A T C G A C G T A G T C A C G T A C G T
A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

Rhox11/MA0629.1/Jaspar

Match Rank:4
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---YCGCTGTC------
AAGACGCTGTAAAGCGA
A C G T A C G T A C G T A G C T A G T C A C T G G T A C G A C T A T C G A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:5
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---YCGCTGTC------
AAGACGCTGTAAAGCGA
A C G T A C G T A C G T A G C T A G T C A C T G G T A C G A C T A T C G A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:YCGCTGTC
-NGCTN--
A G C T A G T C A C T G G T A C G A C T A T C G A C G T A G T C
A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:7
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---YCGCTGTC------
NNNCAGCTGTCAATATN
A C G T A C G T A C G T A G C T A G T C A C T G G T A C G A C T A T C G A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

ZNF341/MA1655.1/Jaspar

Match Rank:8
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-YCGCTGTC---
NNGGCTGTTCCN
A C G T A G C T A G T C A C T G G T A C G A C T A T C G A C G T A G T C A C G T A C G T A C G T
A T C G A G C T C A T G T A C G T A G C A G C T T A C G G A C T A C G T A T G C G A T C G T A C

MEIS3/MA0775.1/Jaspar

Match Rank:9
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:YCGCTGTC--
--CCTGTCAA
A G C T A G T C A C T G G T A C G A C T A T C G A C G T A G T C A C G T A C G T
A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:10
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:YCGCTGTC
CAGCTGTT
A G C T A G T C A C T G G T A C G A C T A T C G A C G T A G T C
A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T