EnhancerDB
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  3. vista1330[chr1:41967378-41967702]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista1330[chr1:41967378-41967702]
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Tissue distribution of vista1330
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Transcription factor that possibly regulate vista1330[chr1:41967378-41967702]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 41967076 41967620 POLR2A UCSC Txn Factor no Conserved 107802957
chr1 41967387 41967396 PITX3 JASPAR yes 28396255
chr1 41967387 41967396 PITX3 JASPAR yes 118278677
chr1 41967402 41967414 HINFP JASPAR yes 28396256
chr1 41967402 41967414 HINFP JASPAR yes 118278678
chr1 41967429 41967439 SP1 JASPAR yes 28396257
chr1 41967429 41967439 SP1 JASPAR yes 118278679
chr1 41967430 41967438 SP1 TRANSFAC yes 28396258
chr1 41967430 41967438 SP1 TRANSFAC yes 118278680
chr1 41967430 41967439 SP1 TRANSFAC yes 28396259
chr1 41967430 41967439 SP1 TRANSFAC yes 118278681
chr1 41967431 41967436 SP1 TRANSFAC yes 28396260
chr1 41967431 41967436 SP1 TRANSFAC yes 118278682
chr1 41967432 41967437 SP1 TRANSFAC yes 28396261
chr1 41967432 41967437 SP1 TRANSFAC yes 118278683
chr1 41967432 41967438 SP1 TRANSFAC yes 28396262
chr1 41967432 41967438 SP1 TRANSFAC yes 118278684
chr1 41967435 41967443 SP1 TRANSFAC yes 28396263
chr1 41967435 41967443 SP1 TRANSFAC yes 118278685
chr1 41967435 41967446 NRF1 JASPAR yes 28396264
chr1 41967435 41967446 NRF1 JASPAR yes 118278686
chr1 41967436 41967441 SP1 TRANSFAC yes 28396265
chr1 41967436 41967441 SP1 TRANSFAC yes 118278687
chr1 41967437 41967442 SP1 TRANSFAC yes 28396266
chr1 41967437 41967442 SP1 TRANSFAC yes 118278688
chr1 41967444 41967459 RFX5 JASPAR yes 28396267
chr1 41967444 41967459 RFX5 JASPAR yes 118278689
chr1 41967453 41967463 NFKB1 JASPAR yes 28396268
chr1 41967453 41967463 NFKB1 JASPAR yes 118278690
chr1 41967453 41967464 NFKB1 JASPAR yes 28396269
chr1 41967453 41967464 NFKB1 JASPAR yes 118278691
chr1 41967466 41967481 TP53 JASPAR yes 28396270
chr1 41967466 41967481 TP53 JASPAR yes 118278692
chr1 41967491 41967509 SRF JASPAR yes 28396271
chr1 41967491 41967509 SRF JASPAR yes 118278693
chr1 41967494 41967503 SRF TRANSFAC yes 28396272
chr1 41967494 41967503 SRF TRANSFAC yes 118278694
chr1 41967494 41967506 SRF JASPAR yes 28396273
chr1 41967494 41967506 SRF JASPAR yes 118278695
chr1 41967495 41967505 HOXD13 JASPAR yes 28396274
chr1 41967495 41967505 HOXD13 JASPAR yes 118278696
chr1 41967495 41967506 HOXA10 JASPAR yes 28396275
chr1 41967495 41967506 HOXA10 JASPAR yes 118278697
chr1 41967496 41967505 CDX1 JASPAR yes 28396276
chr1 41967496 41967505 CDX1 JASPAR yes 118278698
chr1 41967496 41967507 CDX2 JASPAR yes 28396277
chr1 41967496 41967507 CDX2 JASPAR yes 118278699
chr1 41967528 41967544 NFYA JASPAR yes 28396278
chr1 41967528 41967544 NFYA JASPAR yes 118278700
chr1 41967531 41967546 NFYB JASPAR yes 28396279
chr1 41967531 41967546 NFYB JASPAR yes 118278701
chr1 41967551 41967563 NHLH1 JASPAR yes 28396280
chr1 41967551 41967563 NHLH1 JASPAR yes 118278702
chr1 41967559 41967569 NFKB1 JASPAR yes 28396281
chr1 41967559 41967569 NFKB1 JASPAR yes 118278703
chr1 41967559 41967570 NFKB1 JASPAR yes 28396282
chr1 41967559 41967570 NFKB1 JASPAR yes 118278704
chr1 41967566 41967574 SP1 TRANSFAC yes 28396283
chr1 41967566 41967574 SP1 TRANSFAC yes 118278705
chr1 41967583 41967593 HMBOX1 JASPAR yes 28396284
chr1 41967583 41967593 HMBOX1 JASPAR yes 118278706
chr1 41967585 41967588 MYB TRANSFAC yes 28396285
chr1 41967585 41967588 MYB TRANSFAC yes 118278707
chr1 41967602 41967611 SNAI2 JASPAR yes 28396286
chr1 41967602 41967611 SNAI2 JASPAR yes 118278708
chr1 41967602 41967612 FIGLA JASPAR yes 28396287
chr1 41967602 41967612 TCF3 JASPAR yes 28396288
chr1 41967602 41967612 FIGLA JASPAR yes 118278709
chr1 41967602 41967612 TCF3 JASPAR yes 118278710
chr1 41967607 41967613 ZNF354C JASPAR yes 28396289
chr1 41967607 41967613 ZNF354C JASPAR yes 118278711
chr1 41967607 41967617 GSC2 JASPAR yes 28396290
chr1 41967607 41967617 GSC JASPAR yes 28396291
chr1 41967607 41967617 GSC2 JASPAR yes 118278712
chr1 41967607 41967617 GSC JASPAR yes 118278713
chr1 41967608 41967617 PITX3 JASPAR yes 28396292
chr1 41967608 41967617 PITX3 JASPAR yes 118278714
chr1 41967611 41967620 POU3F4 JASPAR yes 28396293
chr1 41967611 41967620 POU5F1B JASPAR yes 28396294
chr1 41967611 41967620 POU3F4 JASPAR yes 118278715
chr1 41967611 41967620 POU5F1B JASPAR yes 118278716
chr1 41967617 41967626 HIC2 JASPAR yes 28396295
chr1 41967617 41967626 HIC2 JASPAR yes 118278717
chr1 41967619 41967626 SP1 TRANSFAC yes 28396296
chr1 41967619 41967626 SP1 TRANSFAC yes 118278718
chr1 41967621 41967626 SP1 TRANSFAC yes 28396297
chr1 41967621 41967626 SP1 TRANSFAC yes 118278719
chr1 41967623 41967630 SP1 TRANSFAC yes 28396298
chr1 41967623 41967630 SP1 TRANSFAC yes 118278720
chr1 41967625 41967630 SP1 TRANSFAC yes 28396299
chr1 41967625 41967630 SP1 TRANSFAC yes 118278721
chr1 41967629 41967640 NRF1 JASPAR yes 28396300
chr1 41967629 41967640 NRF1 JASPAR yes 118278722
chr1 41967633 41967642 THAP1 JASPAR yes 28396301
chr1 41967633 41967642 THAP1 JASPAR yes 118278723
chr1 41967635 41967642 SP1 TRANSFAC yes 28396302
chr1 41967635 41967642 SP1 TRANSFAC yes 118278724
chr1 41967637 41967642 SP1 TRANSFAC yes 28396303
chr1 41967637 41967642 SP1 TRANSFAC yes 118278725
chr1 41967639 41967646 SP1 TRANSFAC yes 28396304
chr1 41967639 41967646 SP1 TRANSFAC yes 118278726
chr1 41967639 41967654 TFAP2A JASPAR yes 28396305
chr1 41967639 41967654 TFAP2C JASPAR yes 28396306
chr1 41967639 41967654 TFAP2A JASPAR yes 118278727
chr1 41967639 41967654 TFAP2C JASPAR yes 118278728
chr1 41967640 41967647 SP1 TRANSFAC yes 28396307
chr1 41967640 41967647 SP1 TRANSFAC yes 118278729
chr1 41967641 41967646 SP1 TRANSFAC yes 28396308
chr1 41967641 41967646 SP1 TRANSFAC yes 118278730
chr1 41967641 41967647 SP1 TRANSFAC yes 28396309
chr1 41967641 41967647 SP1 TRANSFAC yes 118278731
chr1 41967642 41967654 TFAP2A JASPAR yes 28396310
chr1 41967642 41967654 TFAP2B JASPAR yes 28396311
chr1 41967642 41967654 TFAP2C JASPAR yes 28396312
chr1 41967642 41967654 TFAP2A JASPAR yes 118278732
chr1 41967642 41967654 TFAP2B JASPAR yes 118278733
chr1 41967642 41967654 TFAP2C JASPAR yes 118278734
chr1 41967643 41967652 TFAP2A JASPAR yes 28396313
chr1 41967643 41967652 TFAP2A JASPAR yes 118278735
chr1 41967644 41967653 TFAP2A JASPAR yes 28396314
chr1 41967644 41967653 TFAP2A JASPAR yes 118278736
chr1 41967652 41967673 IRF1 JASPAR yes 28396315
chr1 41967652 41967673 IRF1 JASPAR yes 118278737
chr1 41967660 41967665 ETS2 TRANSFAC yes 28396316
chr1 41967660 41967665 ETS2 TRANSFAC yes 118278738
chr1 41967662 41967677 STAT1 JASPAR yes 28396317
chr1 41967662 41967677 STAT1 JASPAR yes 118278739
chr1 41967662 41967680 SRF JASPAR yes 28396318
chr1 41967662 41967680 SRF JASPAR yes 118278740
chr1 41967664 41967675 STAT3 JASPAR yes 28396319
chr1 41967664 41967675 STAT3 JASPAR yes 118278741
chr1 41967684 41967688 LFA1 TRANSFAC yes 28396320
chr1 41967684 41967688 LFA1 TRANSFAC yes 118278742
chr1 41967700 41967705 MYC TRANSFAC yes 28396321
chr1 41967700 41967705 MYC TRANSFAC yes 118278743
SNP sites on vista1330[chr1:41967378-41967702]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 41967496 rs566833943 C T
CDX1 CDX2 HOXA10 HOXD13 POLR2A SRF
262399
chr1 41967514 rs549212191 A G
POLR2A
262400
chr1 41967664 rs141776346 C G
ETS2 IRF1 SRF STAT1 STAT3
262401
chr1 41967697 rs72949364 C T no 262402
Genes possibly regulated by vista1330[chr1:41967378-41967702]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 41944446 41950344 - EDN2 ENSG00000127129.5 41950344 0.82 0.97 576 82966
Expression level of Genes
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miRNAs possibly regulated by vista1330[chr1:41967378-41967702]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr5 92956416 92956436 - hsa-miR-2277-3p MIMAT0011777 93447339 0.13643959361768254 0.790987 0.676023 1312
Expression level of miRNAs
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