EnhancerDB
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  3. vista1353[chr1:42230379-42230587]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista1353[chr1:42230379-42230587]
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Tissue distribution of vista1353
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Transcription factor that possibly regulate vista1353[chr1:42230379-42230587]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 42230365 42230379 TLX1 JASPAR yes 28419369
chr1 42230365 42230379 TLX1 JASPAR yes 118279882
chr1 42230394 42230401 SPIB JASPAR yes 28419370
chr1 42230394 42230401 SPIB JASPAR yes 118279883
chr1 42230406 42230422 SOX4 JASPAR yes 28419371
chr1 42230406 42230422 SOX4 JASPAR yes 118279884
chr1 42230410 42230416 NFE2 TRANSFAC yes 28419372
chr1 42230410 42230416 NFE2 TRANSFAC yes 118279885
chr1 42230415 42230430 TFAP2C JASPAR yes 28419373
chr1 42230415 42230430 TFAP2C JASPAR yes 118279886
chr1 42230416 42230420 NFE TRANSFAC yes 28419374
chr1 42230416 42230420 NFE TRANSFAC yes 118279887
chr1 42230425 42230430 SP1 TRANSFAC yes 28419375
chr1 42230425 42230430 SP1 TRANSFAC yes 118279888
chr1 42230434 42230455 IRF1 JASPAR yes 28419376
chr1 42230434 42230455 IRF1 JASPAR yes 118279889
chr1 42230438 42230452 STAT1 JASPAR yes 28419377
chr1 42230438 42230452 STAT1 JASPAR yes 118279890
chr1 42230438 42230453 PRDM1 JASPAR yes 28419378
chr1 42230438 42230453 STAT2 JASPAR yes 28419379
chr1 42230438 42230453 PRDM1 JASPAR yes 118279891
chr1 42230438 42230453 STAT2 JASPAR yes 118279892
chr1 42230443 42230454 NFKB1 JASPAR yes 28419380
chr1 42230443 42230454 NFKB1 JASPAR yes 118279893
chr1 42230448 42230460 GLI2 JASPAR yes 28419381
chr1 42230448 42230460 GLI2 JASPAR yes 118279894
chr1 42230456 42230462 SOX10 JASPAR yes 28419382
chr1 42230456 42230462 SOX10 JASPAR yes 118279895
chr1 42230478 42230488 TFAP4 JASPAR yes 28419383
chr1 42230478 42230488 TFAP4 JASPAR yes 118279896
chr1 42230506 42230513 CEBPA TRANSFAC yes 28419384
chr1 42230506 42230513 CEBPA TRANSFAC yes 118279897
chr1 42230525 42230546 REST JASPAR yes 28419385
chr1 42230525 42230546 REST JASPAR yes 118279898
chr1 42230552 42230558 YY1 JASPAR yes 28419386
chr1 42230552 42230558 YY1 JASPAR yes 118279899
chr1 42230555 42230566 EBF1 JASPAR yes 28419387
chr1 42230555 42230566 EBF1 JASPAR yes 118279900
chr1 42230557 42230574 BCL6B JASPAR yes 28419388
chr1 42230557 42230574 BCL6B JASPAR yes 118279901
chr1 42230563 42230570 SPIB JASPAR yes 28419389
chr1 42230563 42230570 SPIB JASPAR yes 118279902
chr1 42230581 42230592 TBX20 JASPAR yes 28419390
chr1 42230581 42230592 TBX20 JASPAR yes 118279903
SNP sites on vista1353[chr1:42230379-42230587]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 42230387 rs11210523 G A no 264544
chr1 42230444 rs75993676 G C
IRF1 NFKB1 PRDM1 STAT1 STAT2
264545
chr1 42230478 rs80033065 C T
TFAP4
264546
chr1 42230519 rs182024044 T G no 264547
chr1 42230535 rs564150411 C G
REST
264548
Genes possibly regulated by vista1353[chr1:42230379-42230587]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
Expression level of Genes
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No results
miRNAs possibly regulated by vista1353[chr1:42230379-42230587]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results