EnhancerDB
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  3. vista1578[chr1:52033462-52033748]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista1578[chr1:52033462-52033748]
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Tissue distribution of vista1578
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Transcription factor that possibly regulate vista1578[chr1:52033462-52033748]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 52033262 52033786 POLR2A UCSC Txn Factor no Conserved 107803401
chr1 52033269 52033776 GATA3 UCSC Txn Factor no Conserved 107803403
chr1 52033347 52033673 ESR1 UCSC Txn Factor no Conserved 107803419
chr1 52033356 52033709 EP300 UCSC Txn Factor no Conserved 107803421
chr1 52033481 52033693 FOXA1 UCSC Txn Factor no Conserved 107803439
chr1 52033462 52033472 POU6F2 JASPAR yes 28851817
chr1 52033462 52033472 POU6F2 JASPAR yes 118289556
chr1 52033482 52033488 LEF1 TRANSFAC yes 28851818
chr1 52033482 52033488 SOX10 JASPAR yes 28851819
chr1 52033482 52033488 LEF1 TRANSFAC yes 118289557
chr1 52033482 52033488 SOX10 JASPAR yes 118289558
chr1 52033484 52033503 RFX2 JASPAR yes 28851820
chr1 52033484 52033503 RFX2 JASPAR yes 118289559
chr1 52033488 52033504 RFX2 JASPAR yes 28851821
chr1 52033488 52033504 RFX3 JASPAR yes 28851822
chr1 52033488 52033504 RFX4 JASPAR yes 28851823
chr1 52033488 52033504 RFX5 JASPAR yes 28851824
chr1 52033488 52033504 RFX2 JASPAR yes 118289560
chr1 52033488 52033504 RFX3 JASPAR yes 118289561
chr1 52033488 52033504 RFX4 JASPAR yes 118289562
chr1 52033488 52033504 RFX5 JASPAR yes 118289563
chr1 52033489 52033498 NFIX JASPAR yes 28851825
chr1 52033489 52033498 NFIX JASPAR yes 118289564
chr1 52033489 52033508 RFX2 JASPAR yes 28851826
chr1 52033489 52033508 RFX2 JASPAR yes 118289565
chr1 52033491 52033497 NFIC JASPAR yes 28851827
chr1 52033491 52033497 NFIC JASPAR yes 118289566
chr1 52033495 52033510 RUNX2 JASPAR yes 28851828
chr1 52033495 52033510 RUNX2 JASPAR yes 118289567
chr1 52033566 52033580 NR2F1 JASPAR yes 28851829
chr1 52033566 52033580 NR2F1 JASPAR yes 118289568
chr1 52033582 52033602 RREB1 JASPAR yes 28851830
chr1 52033582 52033602 RREB1 JASPAR yes 118289569
chr1 52033584 52033599 FOXP1 JASPAR yes 28851831
chr1 52033584 52033599 FOXP1 JASPAR yes 118289570
chr1 52033585 52033596 FOXA1 JASPAR yes 28851832
chr1 52033585 52033596 FOXA1 JASPAR yes 118289571
chr1 52033591 52033597 HiNF-A TRANSFAC yes 28851833
chr1 52033591 52033597 HiNF-A TRANSFAC yes 118289572
chr1 52033601 52033612 FOXH1 JASPAR yes 28851834
chr1 52033601 52033612 FOXH1 JASPAR yes 118289573
chr1 52033621 52033632 SPDEF JASPAR yes 28851835
chr1 52033621 52033632 SPDEF JASPAR yes 118289574
chr1 52033625 52033630 GATA2 JASPAR yes 28851836
chr1 52033625 52033630 GATA2 JASPAR yes 118289575
chr1 52033632 52033638 YY1 JASPAR yes 28851837
chr1 52033632 52033638 YY1 JASPAR yes 118289576
chr1 52033650 52033658 RHOXF1 JASPAR yes 28851838
chr1 52033650 52033658 RHOXF1 JASPAR yes 118289577
chr1 52033650 52033659 PITX3 JASPAR yes 28851839
chr1 52033650 52033659 PITX3 JASPAR yes 118289578
chr1 52033655 52033659 YY1 TRANSFAC yes 28851840
chr1 52033655 52033659 YY1 TRANSFAC yes 118289579
chr1 52033681 52033692 FOXB1 JASPAR yes 28851841
chr1 52033681 52033692 FOXB1 JASPAR yes 118289580
chr1 52033682 52033686 YY1 TRANSFAC yes 28851842
chr1 52033682 52033686 YY1 TRANSFAC yes 118289581
chr1 52033687 52033693 SOX10 JASPAR yes 28851843
chr1 52033687 52033693 SOX10 JASPAR yes 118289582
chr1 52033697 52033701 LFA1 TRANSFAC yes 28851844
chr1 52033697 52033701 LFA1 TRANSFAC yes 118289583
chr1 52033708 52033719 FOXC1 JASPAR yes 28851845
chr1 52033708 52033719 FOXC1 JASPAR yes 118289584
chr1 52033710 52033718 FOXO3 JASPAR yes 28851846
chr1 52033710 52033718 FOXO3 JASPAR yes 118289585
chr1 52033727 52033746 REST JASPAR yes 28851847
chr1 52033727 52033746 REST JASPAR yes 118289586
chr1 52033746 52033755 SOX9 JASPAR yes 28851848
chr1 52033746 52033755 SOX9 JASPAR yes 118289587
SNP sites on vista1578[chr1:52033462-52033748]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 52033462 rs10888723 A G
EP300 ESR1 GATA3 POLR2A POU6F2
306358
chr1 52033586 rs72892096 C T
EP300 ESR1 FOXA1 FOXP1 GATA3 POLR2A RREB1
306359
Genes possibly regulated by vista1578[chr1:52033462-52033748]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 51819935 51985000 - EPS15 ENSG00000085832.12 51985000 0.6 0.99 689 51538
chr1 52042851 52254889 + OSBPL9 ENSG00000117859.14 52042851 0.67 0.99 690 90897
Expression level of Genes
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miRNAs possibly regulated by vista1578[chr1:52033462-52033748]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results