EnhancerDB
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  3. vista1612[chr1:53588397-53588520]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista1612[chr1:53588397-53588520]
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Tissue distribution of vista1612
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Transcription factor that possibly regulate vista1612[chr1:53588397-53588520]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 53588421 53588432 FOS JASPAR yes 28913041
chr1 53588421 53588432 FOSL1 JASPAR yes 28913042
chr1 53588421 53588432 JUND JASPAR yes 28913043
chr1 53588421 53588432 FOS JASPAR yes 118291118
chr1 53588421 53588432 FOSL1 JASPAR yes 118291119
chr1 53588421 53588432 JUND JASPAR yes 118291120
chr1 53588422 53588433 FOSL2 JASPAR yes 28913044
chr1 53588422 53588433 JUNB JASPAR yes 28913045
chr1 53588422 53588433 FOSL2 JASPAR yes 118291121
chr1 53588422 53588433 JUNB JASPAR yes 118291122
chr1 53588422 53588436 JUN JASPAR yes 28913046
chr1 53588422 53588436 JUN JASPAR yes 118291123
chr1 53588423 53588430 JUN TRANSFAC yes 28913047
chr1 53588423 53588430 JUN TRANSFAC yes 118291124
chr1 53588423 53588434 BATF JASPAR yes 28913048
chr1 53588423 53588434 BATF JASPAR yes 118291125
chr1 53588430 53588444 GLIS3 JASPAR yes 28913049
chr1 53588430 53588444 GLIS3 JASPAR yes 118291126
chr1 53588431 53588437 SP1 TRANSFAC yes 28913050
chr1 53588431 53588437 SP1 TRANSFAC yes 118291127
chr1 53588449 53588463 POU1F1 JASPAR yes 28913051
chr1 53588449 53588463 POU1F1 JASPAR yes 118291128
chr1 53588453 53588470 BCL6B JASPAR yes 28913052
chr1 53588453 53588470 BCL6B JASPAR yes 118291129
chr1 53588461 53588468 SPI1 JASPAR yes 28913053
chr1 53588461 53588468 SPI1 JASPAR yes 118291130
chr1 53588466 53588479 ELF3 JASPAR yes 28913054
chr1 53588466 53588479 ELF3 JASPAR yes 118291131
chr1 53588467 53588478 ELF5 JASPAR yes 28913055
chr1 53588467 53588478 ELF5 JASPAR yes 118291132
chr1 53588467 53588479 EHF JASPAR yes 28913056
chr1 53588467 53588479 ELF4 JASPAR yes 28913057
chr1 53588467 53588479 EHF JASPAR yes 118291133
chr1 53588467 53588479 ELF4 JASPAR yes 118291134
chr1 53588468 53588476 EHF JASPAR yes 28913058
chr1 53588468 53588476 EHF JASPAR yes 118291135
chr1 53588492 53588504 TFAP2A JASPAR yes 28913059
chr1 53588492 53588504 TFAP2B JASPAR yes 28913060
chr1 53588492 53588504 TFAP2C JASPAR yes 28913061
chr1 53588492 53588504 TFAP2A JASPAR yes 118291136
chr1 53588492 53588504 TFAP2B JASPAR yes 118291137
chr1 53588492 53588504 TFAP2C JASPAR yes 118291138
chr1 53588500 53588505 ETS2 TRANSFAC yes 28913062
chr1 53588500 53588505 ETS2 TRANSFAC yes 118291139
SNP sites on vista1612[chr1:53588397-53588520]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 53588443 rs1769303 A T
GLIS3
312276
chr1 53588494 rs1679977 G A
TFAP2A TFAP2B TFAP2C
312277
chr1 53588511 rs180685181 T C no 312278
Genes possibly regulated by vista1612[chr1:53588397-53588520]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 53527854 53551174 + PODN ENSG00000174348.9 53527854 0.89 1.0 708 39457
chr1 53552855 53608289 - SLC1A7 ENSG00000162383.7 53608289 0.86 0.94 709 80231
chr1 53662101 53679869 + CPT2 ENSG00000157184.5 53662101 0.86 0.99 710 26419
chr1 53679771 53686289 - C1orf123 ENSG00000162384.9 53686289 0.65 0.99 711 2231
Expression level of Genes
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miRNAs possibly regulated by vista1612[chr1:53588397-53588520]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results