EnhancerDB
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  3. vista1621[chr1:54127029-54127330]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista1621[chr1:54127029-54127330]
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Tissue distribution of vista1621
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Transcription factor that possibly regulate vista1621[chr1:54127029-54127330]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 54127055 54127070 FOXA1 JASPAR yes 118291262
chr1 54127057 54127071 POU1F1 JASPAR yes 118291263
chr1 54127059 54127063 YY1 TRANSFAC yes 118291264
chr1 54127059 54127070 FOXA1 JASPAR yes 118291265
chr1 54127075 54127079 YY1 TRANSFAC yes 118291266
chr1 54127078 54127093 HNF4A JASPAR yes 118291267
chr1 54127079 54127094 HNF4G JASPAR yes 118291268
chr1 54127083 54127089 SOX10 JASPAR yes 118291269
chr1 54127112 54127122 EN2 JASPAR yes 118291270
chr1 54127112 54127122 ESX1 JASPAR yes 118291271
chr1 54127112 54127122 GBX1 JASPAR yes 118291272
chr1 54127112 54127122 GBX2 JASPAR yes 118291273
chr1 54127112 54127122 HESX1 JASPAR yes 118291274
chr1 54127112 54127122 HOXB3 JASPAR yes 118291275
chr1 54127112 54127122 LBX2 JASPAR yes 118291276
chr1 54127112 54127122 LHX2 JASPAR yes 118291277
chr1 54127112 54127122 RAX JASPAR yes 118291278
chr1 54127113 54127121 BARX1 JASPAR yes 118291279
chr1 54127113 54127121 BSX JASPAR yes 118291280
chr1 54127113 54127121 EN1 JASPAR yes 118291281
chr1 54127113 54127121 ISX JASPAR yes 118291282
chr1 54127113 54127121 LHX9 JASPAR yes 118291283
chr1 54127113 54127121 MSX1 JASPAR yes 118291284
chr1 54127113 54127121 MSX2 JASPAR yes 118291285
chr1 54127113 54127121 PRRX1 JASPAR yes 118291286
chr1 54127113 54127121 RAX2 JASPAR yes 118291287
chr1 54127113 54127121 SHOX JASPAR yes 118291288
chr1 54127113 54127122 VENTX JASPAR yes 118291289
chr1 54127113 54127127 ONECUT3 JASPAR yes 118291290
chr1 54127114 54127124 PAX3 JASPAR yes 118291291
chr1 54127114 54127125 PHOX2A JASPAR yes 118291292
chr1 54127121 54127131 HOXA13 JASPAR yes 118291293
chr1 54127121 54127131 HOXB13 JASPAR yes 118291294
chr1 54127121 54127131 HOXD13 JASPAR yes 118291295
chr1 54127121 54127132 HOXA10 JASPAR yes 118291296
chr1 54127122 54127131 CDX1 JASPAR yes 118291297
chr1 54127155 54127161 MZF1 JASPAR yes 118291298
chr1 54127207 54127212 MYC TRANSFAC yes 118291299
chr1 54127217 54127223 MYC TRANSFAC yes 118291300
chr1 54127225 54127246 ZNF263 JASPAR yes 118291301
chr1 54127235 54127240 TFAP2A TRANSFAC yes 118291302
chr1 54127235 54127241 MZF1 JASPAR yes 118291303
chr1 54127271 54127286 TFAP2C JASPAR yes 118291304
chr1 54127317 54127328 ESRRB JASPAR yes 118291305
chr1 54127317 54127330 NR2F1 JASPAR yes 118291306
chr1 54127319 54127327 NR4A2 JASPAR yes 118291307
chr1 54127321 54127325 ESR1 TRANSFAC yes 118291308
SNP sites on vista1621[chr1:54127029-54127330]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 54127042 rs77887962 T C no 316043
chr1 54127055 rs374988600 C T
FOXA1
316044
chr1 54127120 rs115876517 G A,C
BARX1 BSX EN1 EN2 ESX1 GBX1 GBX2 HESX1 HOXB3 ISX LBX2 LHX2 LHX9 MSX1 MSX2 ONECUT3 PAX3 PHOX2A PRRX1 RAX RAX2 SHOX VENTX
316045
chr1 54127203 rs571732368 C A no 316046
chr1 54127230 rs61548057 G A
ZNF263
316047
Genes possibly regulated by vista1621[chr1:54127029-54127330]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 53971910 54199877 - GLIS1 ENSG00000174332.3 54199877 0.94 0.98 715 27453
Expression level of Genes
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miRNAs possibly regulated by vista1621[chr1:54127029-54127330]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results