EnhancerDB
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  3. vista1626[chr1:54168078-54168275]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista1626[chr1:54168078-54168275]
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Tissue distribution of vista1626
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Transcription factor that possibly regulate vista1626[chr1:54168078-54168275]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 54168099 54168107 SP1 TRANSFAC yes 28948236
chr1 54168099 54168107 SP1 TRANSFAC yes 118291556
chr1 54168111 54168117 NFE2 TRANSFAC yes 28948237
chr1 54168111 54168117 NFE2 TRANSFAC yes 118291557
chr1 54168112 54168124 TFAP2A JASPAR yes 28948238
chr1 54168112 54168124 TFAP2B JASPAR yes 28948239
chr1 54168112 54168124 TFAP2C JASPAR yes 28948240
chr1 54168112 54168124 TFAP2A JASPAR yes 118291558
chr1 54168112 54168124 TFAP2B JASPAR yes 118291559
chr1 54168112 54168124 TFAP2C JASPAR yes 118291560
chr1 54168113 54168122 TFAP2A JASPAR yes 28948241
chr1 54168113 54168122 TFAP2A JASPAR yes 118291561
chr1 54168131 54168136 ETS2 TRANSFAC yes 28948242
chr1 54168131 54168136 ETS2 TRANSFAC yes 118291562
chr1 54168138 54168154 ZNF143 JASPAR yes 28948243
chr1 54168138 54168154 ZNF143 JASPAR yes 118291563
chr1 54168142 54168153 EBF1 JASPAR yes 28948244
chr1 54168142 54168153 EBF1 JASPAR yes 118291564
chr1 54168158 54168170 INSM1 JASPAR yes 28948245
chr1 54168158 54168170 INSM1 JASPAR yes 118291565
chr1 54168162 54168173 NFKB1 JASPAR yes 28948246
chr1 54168162 54168173 NFKB1 JASPAR yes 118291566
chr1 54168165 54168183 SRF JASPAR yes 28948247
chr1 54168165 54168183 SRF JASPAR yes 118291567
chr1 54168172 54168178 GATA3 JASPAR yes 28948248
chr1 54168172 54168178 GATA3 JASPAR yes 118291568
chr1 54168176 54168193 RXRA JASPAR yes 28948249
chr1 54168176 54168193 RXRA JASPAR yes 118291569
chr1 54168176 54168197 ZNF263 JASPAR yes 28948250
chr1 54168176 54168197 ZNF263 JASPAR yes 118291570
chr1 54168177 54168181 LFA1 TRANSFAC yes 28948251
chr1 54168177 54168181 LFA1 TRANSFAC yes 118291571
chr1 54168202 54168216 RORA JASPAR yes 28948252
chr1 54168202 54168216 RORA JASPAR yes 118291572
chr1 54168211 54168222 USF2 JASPAR yes 28948253
chr1 54168211 54168222 USF2 JASPAR yes 118291573
chr1 54168214 54168219 USF2 TRANSFAC yes 28948254
chr1 54168214 54168219 USF2 TRANSFAC yes 118291574
chr1 54168216 54168231 TFAP2A JASPAR yes 28948255
chr1 54168216 54168231 TFAP2A JASPAR yes 118291575
chr1 54168217 54168231 TLX1 JASPAR yes 28948256
chr1 54168217 54168231 TLX1 JASPAR yes 118291576
chr1 54168217 54168232 HNF4A JASPAR yes 28948257
chr1 54168217 54168232 HNF4A JASPAR yes 118291577
chr1 54168218 54168232 TLX1 JASPAR yes 28948258
chr1 54168218 54168232 TLX1 JASPAR yes 118291578
chr1 54168218 54168233 TFAP2A JASPAR yes 28948259
chr1 54168218 54168233 TFAP2A JASPAR yes 118291579
chr1 54168224 54168238 NR2F1 JASPAR yes 28948260
chr1 54168224 54168238 NR2F1 JASPAR yes 118291580
chr1 54168227 54168245 IRF2 JASPAR yes 28948261
chr1 54168227 54168245 IRF2 JASPAR yes 118291581
chr1 54168239 54168243 NFE TRANSFAC yes 28948262
chr1 54168239 54168243 NFE TRANSFAC yes 118291582
chr1 54168249 54168258 THAP1 JASPAR yes 28948263
chr1 54168249 54168258 THAP1 JASPAR yes 118291583
chr1 54168252 54168256 LFA1 TRANSFAC yes 28948264
chr1 54168252 54168256 LFA1 TRANSFAC yes 118291584
chr1 54168257 54168261 ESR1 TRANSFAC yes 28948265
chr1 54168257 54168261 ESR1 TRANSFAC yes 118291585
SNP sites on vista1626[chr1:54168078-54168275]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 54168221 rs570934409 G A
HNF4A TFAP2A TLX1 USF2
316438
chr1 54168275 rs55985647 C T no 316439
Genes possibly regulated by vista1626[chr1:54168078-54168275]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 53971910 54199877 - GLIS1 ENSG00000174332.3 54199877 0.94 0.98 715 68398
Expression level of Genes
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miRNAs possibly regulated by vista1626[chr1:54168078-54168275]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results