EnhancerDB
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  3. rs570934409[chr1:54168221]
Enhancers that have rs570934409[chr1:54168221]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 54167485 54174264 enh66924
Neural Stem Cells (H9)
chr1 54168078 54168275 vista1626
VISTA
Transcript factors that have rs570934409[chr1:54168221]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 54166553 54168341 ZNF274 GTRD no Bone Marrow (K562) 107804259
chr1 54167347 54168495 P63 GTRD no Skin (Keratinocyte) 107804260
chr1 54167367 54168358 P63 GTRD no Skin (Keratinocyte) 107804261
chr1 54167412 54168525 P63 GTRD no Skin (Keratinocyte) 107804262
chr1 54167510 54168521 P63 GTRD no Skin (Keratinocyte) 107804264
chr1 54167565 54168290 ZBTB33 GTRD no Brain (SK-N-SH) 107804265
chr1 54167696 54168248 ZBTB33 GTRD no Brain (SK-N-SH) 107804270
chr1 54168211 54168222 USF2 JASPAR yes 28948253
chr1 54168211 54168222 USF2 JASPAR yes 118291573
chr1 54168216 54168231 TFAP2A JASPAR yes 28948255
chr1 54168216 54168231 TFAP2A JASPAR yes 118291575
chr1 54168217 54168231 TLX1 JASPAR yes 28948256
chr1 54168217 54168231 TLX1 JASPAR yes 118291576
chr1 54168217 54168232 HNF4A JASPAR yes 28948257
chr1 54168217 54168232 HNF4A JASPAR yes 118291577
chr1 54168218 54168232 TLX1 JASPAR yes 28948258
chr1 54168218 54168232 TLX1 JASPAR yes 118291578
chr1 54168218 54168233 TFAP2A JASPAR yes 28948259
chr1 54168218 54168233 TFAP2A JASPAR yes 118291579
Genes associated with rs570934409[chr1:54168221], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More