EnhancerDB
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  3. vista1648[chr1:54771290-54771540]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista1648[chr1:54771290-54771540]
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Tissue distribution of vista1648
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Transcription factor that possibly regulate vista1648[chr1:54771290-54771540]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 54771289 54771304 FOXP1 JASPAR yes 28971164
chr1 54771289 54771304 FOXP1 JASPAR yes 118292408
chr1 54771290 54771305 FOXP1 JASPAR yes 28971165
chr1 54771290 54771305 FOXP1 JASPAR yes 118292409
chr1 54771291 54771297 TBP TRANSFAC yes 28971166
chr1 54771291 54771297 TBP TRANSFAC yes 118292410
chr1 54771291 54771306 FOXP1 JASPAR yes 28971167
chr1 54771291 54771306 FOXP1 JASPAR yes 118292411
chr1 54771292 54771307 FOXP1 JASPAR yes 28971168
chr1 54771292 54771307 FOXP1 JASPAR yes 118292412
chr1 54771292 54771313 IRF1 JASPAR yes 28971169
chr1 54771292 54771313 IRF1 JASPAR yes 118292413
chr1 54771293 54771308 FOXP1 JASPAR yes 28971170
chr1 54771293 54771308 FOXP1 JASPAR yes 118292414
chr1 54771294 54771315 IRF1 JASPAR yes 28971171
chr1 54771294 54771315 IRF1 JASPAR yes 118292415
chr1 54771295 54771310 FOXP1 JASPAR yes 28971172
chr1 54771295 54771310 FOXP1 JASPAR yes 118292416
chr1 54771296 54771311 STAT2 JASPAR yes 28971173
chr1 54771296 54771311 STAT2 JASPAR yes 118292417
chr1 54771296 54771317 IRF1 JASPAR yes 28971174
chr1 54771296 54771317 IRF1 JASPAR yes 118292418
chr1 54771297 54771312 FOXP1 JASPAR yes 28971175
chr1 54771297 54771312 FOXP1 JASPAR yes 118292419
chr1 54771298 54771319 IRF1 JASPAR yes 28971176
chr1 54771298 54771319 IRF1 JASPAR yes 118292420
chr1 54771302 54771317 PRDM1 JASPAR yes 28971177
chr1 54771302 54771317 PRDM1 JASPAR yes 118292421
chr1 54771302 54771323 IRF1 JASPAR yes 28971178
chr1 54771302 54771323 IRF1 JASPAR yes 118292422
chr1 54771304 54771325 IRF1 JASPAR yes 28971179
chr1 54771304 54771325 IRF1 JASPAR yes 118292423
chr1 54771306 54771321 PRDM1 JASPAR yes 28971180
chr1 54771306 54771321 PRDM1 JASPAR yes 118292424
chr1 54771308 54771323 PRDM1 JASPAR yes 28971181
chr1 54771308 54771323 PRDM1 JASPAR yes 118292425
chr1 54771327 54771337 POU6F2 JASPAR yes 28971182
chr1 54771327 54771337 POU6F2 JASPAR yes 118292426
chr1 54771331 54771335 YY1 TRANSFAC yes 28971183
chr1 54771331 54771335 YY1 TRANSFAC yes 118292427
chr1 54771357 54771364 JUN TRANSFAC yes 28971184
chr1 54771357 54771364 JUN TRANSFAC yes 118292428
chr1 54771361 54771371 TFEC JASPAR yes 28971185
chr1 54771361 54771371 TFEC JASPAR yes 118292429
chr1 54771361 54771372 USF1 JASPAR yes 28971186
chr1 54771361 54771372 USF2 JASPAR yes 28971187
chr1 54771361 54771372 USF1 JASPAR yes 118292430
chr1 54771361 54771372 USF2 JASPAR yes 118292431
chr1 54771370 54771381 E2F6 JASPAR yes 28971188
chr1 54771370 54771381 E2F6 JASPAR yes 118292432
chr1 54771373 54771381 TBX15 JASPAR yes 28971189
chr1 54771373 54771381 TBX15 JASPAR yes 118292433
chr1 54771374 54771388 PLAG1 JASPAR yes 28971190
chr1 54771374 54771388 PLAG1 JASPAR yes 118292434
chr1 54771379 54771386 E2F1 TRANSFAC yes 28971191
chr1 54771379 54771386 E2F1 TRANSFAC yes 118292435
chr1 54771406 54771419 SMAD2 JASPAR yes 28971192
chr1 54771406 54771419 SMAD2 JASPAR yes 118292436
chr1 54771444 54771448 TEAD2 TRANSFAC yes 28971193
chr1 54771444 54771448 TEAD2 TRANSFAC yes 118292437
chr1 54771444 54771449 TBP TRANSFAC yes 28971194
chr1 54771444 54771449 TBP TRANSFAC yes 118292438
chr1 54771444 54771450 TFIID TRANSFAC yes 28971195
chr1 54771444 54771450 TFIID TRANSFAC yes 118292439
chr1 54771489 54771503 PLAG1 JASPAR yes 28971196
chr1 54771489 54771503 PLAG1 JASPAR yes 118292440
chr1 54771496 54771508 YY1 JASPAR yes 28971197
chr1 54771496 54771508 YY1 JASPAR yes 118292441
chr1 54771498 54771518 PPARG JASPAR yes 28971198
chr1 54771498 54771518 PPARG JASPAR yes 118292442
chr1 54771502 54771506 ESR1 TRANSFAC yes 28971199
chr1 54771502 54771506 ESR1 TRANSFAC yes 118292443
chr1 54771522 54771526 NFE TRANSFAC yes 28971200
chr1 54771522 54771526 NFE TRANSFAC yes 118292444
chr1 54771522 54771527 GATA1 TRANSFAC yes 28971201
chr1 54771522 54771527 GATA1 TRANSFAC yes 118292445
chr1 54771522 54771528 GATA3 JASPAR yes 28971202
chr1 54771522 54771528 GATA3 JASPAR yes 118292446
SNP sites on vista1648[chr1:54771290-54771540]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 54771308 rs10888845 G A
FOXP1 IRF1 PRDM1 STAT2
319190
chr1 54771418 rs12240201 A G
SMAD2
319191
chr1 54771428 rs569288968 G C no 319192
Genes possibly regulated by vista1648[chr1:54771290-54771540]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 54703710 54704736 + SSBP3-AS1 ENSG00000198711.4 54703710 0.82 0.95 731 32420
Expression level of Genes
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miRNAs possibly regulated by vista1648[chr1:54771290-54771540]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results