EnhancerDB
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  3. vista1650[chr1:54804829-54805209]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista1650[chr1:54804829-54805209]
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Tissue distribution of vista1650
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Transcription factor that possibly regulate vista1650[chr1:54804829-54805209]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 54804823 54804844 IRF1 JASPAR yes 28975198
chr1 54804823 54804844 IRF1 JASPAR yes 118292490
chr1 54804829 54804832 MYB TRANSFAC yes 28975199
chr1 54804829 54804832 MYB TRANSFAC yes 118292491
chr1 54804829 54804844 FOXP1 JASPAR yes 28975200
chr1 54804829 54804844 FOXP1 JASPAR yes 118292492
chr1 54804829 54804850 IRF1 JASPAR yes 28975201
chr1 54804829 54804850 IRF1 JASPAR yes 118292493
chr1 54804830 54804845 FOXP1 JASPAR yes 28975202
chr1 54804830 54804845 FOXP1 JASPAR yes 118292494
chr1 54804833 54804848 STAT2 JASPAR yes 28975203
chr1 54804833 54804848 STAT2 JASPAR yes 118292495
chr1 54804833 54804854 IRF1 JASPAR yes 28975204
chr1 54804833 54804854 IRF1 JASPAR yes 118292496
chr1 54804834 54804849 FOXP1 JASPAR yes 28975205
chr1 54804834 54804849 FOXP1 JASPAR yes 118292497
chr1 54804835 54804856 IRF1 JASPAR yes 28975206
chr1 54804835 54804856 IRF1 JASPAR yes 118292498
chr1 54804839 54804854 PRDM1 JASPAR yes 28975207
chr1 54804839 54804854 PRDM1 JASPAR yes 118292499
chr1 54804839 54804860 IRF1 JASPAR yes 28975208
chr1 54804839 54804860 IRF1 JASPAR yes 118292500
chr1 54804840 54804855 FOXP1 JASPAR yes 28975209
chr1 54804840 54804855 FOXP1 JASPAR yes 118292501
chr1 54804841 54804862 IRF1 JASPAR yes 28975210
chr1 54804841 54804862 IRF1 JASPAR yes 118292502
chr1 54804842 54804856 IRF7 JASPAR yes 28975211
chr1 54804842 54804856 IRF7 JASPAR yes 118292503
chr1 54804843 54804857 STAT1 JASPAR yes 28975212
chr1 54804843 54804857 STAT1 JASPAR yes 118292504
chr1 54804843 54804858 STAT2 JASPAR yes 28975213
chr1 54804843 54804858 STAT2 JASPAR yes 118292505
chr1 54804845 54804866 IRF1 JASPAR yes 28975214
chr1 54804845 54804866 IRF1 JASPAR yes 118292506
chr1 54804859 54804867 FEV JASPAR yes 28975215
chr1 54804859 54804867 FEV JASPAR yes 118292507
chr1 54804861 54804882 ZNF263 JASPAR yes 28975216
chr1 54804861 54804882 ZNF263 JASPAR yes 118292508
chr1 54804867 54804881 PLAG1 JASPAR yes 28975217
chr1 54804867 54804881 PLAG1 JASPAR yes 118292509
chr1 54804870 54804880 SP1 JASPAR yes 28975218
chr1 54804870 54804880 SP1 JASPAR yes 118292510
chr1 54804877 54804891 GATA2 JASPAR yes 28975219
chr1 54804877 54804891 GATA2 JASPAR yes 118292511
chr1 54804881 54804889 GATA3 JASPAR yes 28975220
chr1 54804881 54804889 GATA5 JASPAR yes 28975221
chr1 54804881 54804889 GATA3 JASPAR yes 118292512
chr1 54804881 54804889 GATA5 JASPAR yes 118292513
chr1 54804889 54804894 GATA2 JASPAR yes 28975222
chr1 54804889 54804894 GATA2 JASPAR yes 118292514
chr1 54804898 54804908 HMBOX1 JASPAR yes 28975223
chr1 54804898 54804908 HMBOX1 JASPAR yes 118292515
chr1 54804902 54804914 TEAD1 JASPAR yes 28975224
chr1 54804902 54804914 TEAD1 JASPAR yes 118292516
chr1 54804904 54804914 TEAD1 JASPAR yes 28975225
chr1 54804904 54804914 TEAD4 JASPAR yes 28975226
chr1 54804904 54804914 TEAD1 JASPAR yes 118292517
chr1 54804904 54804914 TEAD4 JASPAR yes 118292518
chr1 54804905 54804913 TEAD3 JASPAR yes 28975227
chr1 54804905 54804913 TEAD3 JASPAR yes 118292519
chr1 54804911 54804924 HNF1B JASPAR yes 28975228
chr1 54804911 54804924 HNF1B JASPAR yes 118292520
chr1 54804914 54804924 GSC2 JASPAR yes 28975229
chr1 54804914 54804924 GSC2 JASPAR yes 118292521
chr1 54804915 54804923 OTX1 JASPAR yes 28975230
chr1 54804915 54804923 OTX2 JASPAR yes 28975231
chr1 54804915 54804923 OTX1 JASPAR yes 118292522
chr1 54804915 54804923 OTX2 JASPAR yes 118292523
chr1 54804931 54804941 HMBOX1 JASPAR yes 28975232
chr1 54804931 54804941 HMBOX1 JASPAR yes 118292524
chr1 54804941 54804962 IRF1 JASPAR yes 28975233
chr1 54804941 54804962 IRF1 JASPAR yes 118292525
chr1 54804945 54804959 SPIC JASPAR yes 28975234
chr1 54804945 54804959 SPIC JASPAR yes 118292526
chr1 54804945 54804960 PRDM1 JASPAR yes 28975235
chr1 54804945 54804960 PRDM1 JASPAR yes 118292527
chr1 54804955 54804964 NKX3-2 JASPAR yes 28975236
chr1 54804955 54804964 NKX3-2 JASPAR yes 118292528
chr1 54804967 54804972 GATA2 JASPAR yes 28975237
chr1 54804967 54804972 GATA2 JASPAR yes 118292529
chr1 54804968 54804978 HESX1 JASPAR yes 28975238
chr1 54804968 54804978 HESX1 JASPAR yes 118292530
chr1 54804985 54804991 GATA3 JASPAR yes 28975239
chr1 54804985 54804991 GATA3 JASPAR yes 118292531
chr1 54804998 54805004 NFIC JASPAR yes 28975240
chr1 54804998 54805004 NFIC JASPAR yes 118292532
chr1 54805020 54805026 ZNF354C JASPAR yes 28975241
chr1 54805020 54805026 ZNF354C JASPAR yes 118292533
chr1 54805027 54805037 SMAD3 JASPAR yes 28975242
chr1 54805027 54805037 SMAD3 JASPAR yes 118292534
chr1 54805038 54805047 VENTX JASPAR yes 28975243
chr1 54805038 54805047 VENTX JASPAR yes 118292535
chr1 54805088 54805092 NFE TRANSFAC yes 28975244
chr1 54805088 54805092 NFE TRANSFAC yes 118292536
chr1 54805098 54805102 YY1 TRANSFAC yes 28975245
chr1 54805098 54805102 YY1 TRANSFAC yes 118292537
chr1 54805108 54805128 PPARG JASPAR yes 28975246
chr1 54805108 54805128 PPARG JASPAR yes 118292538
chr1 54805110 54805115 SP1 TRANSFAC yes 28975247
chr1 54805110 54805115 SP1 TRANSFAC yes 118292539
chr1 54805137 54805148 FOXP2 JASPAR yes 28975248
chr1 54805137 54805148 FOXP2 JASPAR yes 118292540
chr1 54805156 54805164 HOXA5 JASPAR yes 28975249
chr1 54805156 54805164 HOXA5 JASPAR yes 118292541
chr1 54805157 54805167 MEOX1 JASPAR yes 28975250
chr1 54805157 54805167 MEOX2 JASPAR yes 28975251
chr1 54805157 54805167 POU6F1 JASPAR yes 28975252
chr1 54805157 54805167 MEOX1 JASPAR yes 118292542
chr1 54805157 54805167 MEOX2 JASPAR yes 118292543
chr1 54805157 54805167 POU6F1 JASPAR yes 118292544
SNP sites on vista1650[chr1:54804829-54805209]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 54804887 rs74071648 T C
GATA2 GATA3 GATA5
319615
chr1 54805097 rs143804095 A C no 319616
Genes possibly regulated by vista1650[chr1:54804829-54805209]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 54691105 54879152 - SSBP3 ENSG00000157216.11 54879152 0.79 1.0 730 26057
Expression level of Genes
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miRNAs possibly regulated by vista1650[chr1:54804829-54805209]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results