EnhancerDB
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  3. vista1653[chr1:54842500-54842749]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista1653[chr1:54842500-54842749]
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Tissue distribution of vista1653
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Transcription factor that possibly regulate vista1653[chr1:54842500-54842749]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 54842431 54843175 JUND UCSC Txn Factor no Conserved 107804925
chr1 54842518 54842522 NFE TRANSFAC yes 28979829
chr1 54842518 54842522 NFE TRANSFAC yes 118292604
chr1 54842529 54842543 PLAG1 JASPAR yes 28979830
chr1 54842529 54842543 PLAG1 JASPAR yes 118292605
chr1 54842530 54842545 TFAP2A JASPAR yes 28979831
chr1 54842530 54842545 TFAP2C JASPAR yes 28979832
chr1 54842530 54842545 TFAP2A JASPAR yes 118292606
chr1 54842530 54842545 TFAP2C JASPAR yes 118292607
chr1 54842546 54842558 TAL1 JASPAR yes 28979833
chr1 54842546 54842558 TAL1 JASPAR yes 118292608
chr1 54842547 54842559 PKNOX2 JASPAR yes 28979834
chr1 54842547 54842559 PKNOX2 JASPAR yes 118292609
chr1 54842548 54842558 NEUROG2 JASPAR yes 28979835
chr1 54842548 54842558 NEUROG2 JASPAR yes 118292610
chr1 54842553 54842557 NFE TRANSFAC yes 28979836
chr1 54842553 54842557 NFE TRANSFAC yes 118292611
chr1 54842584 54842598 JUN JASPAR yes 28979837
chr1 54842584 54842598 JUN JASPAR yes 118292612
chr1 54842586 54842597 BATF JASPAR yes 28979838
chr1 54842586 54842597 BATF JASPAR yes 118292613
chr1 54842587 54842598 FOSL2 JASPAR yes 28979839
chr1 54842587 54842598 JUNB JASPAR yes 28979840
chr1 54842587 54842598 FOSL2 JASPAR yes 118292614
chr1 54842587 54842598 JUNB JASPAR yes 118292615
chr1 54842588 54842599 FOS JASPAR yes 28979841
chr1 54842588 54842599 FOSL1 JASPAR yes 28979842
chr1 54842588 54842599 JUND JASPAR yes 28979843
chr1 54842588 54842599 NFE2 JASPAR yes 28979844
chr1 54842588 54842599 FOS JASPAR yes 118292616
chr1 54842588 54842599 FOSL1 JASPAR yes 118292617
chr1 54842588 54842599 JUND JASPAR yes 118292618
chr1 54842588 54842599 NFE2 JASPAR yes 118292619
chr1 54842589 54842598 JDP2 JASPAR yes 28979845
chr1 54842589 54842598 JDP2 JASPAR yes 118292620
chr1 54842589 54842600 FOSL2 JASPAR yes 28979846
chr1 54842589 54842600 JUNB JASPAR yes 28979847
chr1 54842589 54842600 FOSL2 JASPAR yes 118292621
chr1 54842589 54842600 JUNB JASPAR yes 118292622
chr1 54842589 54842603 JUN JASPAR yes 28979848
chr1 54842589 54842603 JUN JASPAR yes 118292623
chr1 54842600 54842606 SOX10 JASPAR yes 28979849
chr1 54842600 54842606 SOX10 JASPAR yes 118292624
chr1 54842623 54842638 TP53 JASPAR yes 28979850
chr1 54842623 54842638 TP53 JASPAR yes 118292625
chr1 54842623 54842643 TP53 JASPAR yes 28979851
chr1 54842623 54842643 TP53 JASPAR yes 118292626
chr1 54842630 54842639 ZEB1 JASPAR yes 28979852
chr1 54842630 54842639 ZEB1 JASPAR yes 118292627
chr1 54842638 54842649 HOXC13 JASPAR yes 28979853
chr1 54842638 54842649 HOXC13 JASPAR yes 118292628
chr1 54842663 54842667 YY1 TRANSFAC yes 28979854
chr1 54842663 54842667 YY1 TRANSFAC yes 118292629
chr1 54842669 54842680 NFE2L2 JASPAR yes 28979855
chr1 54842669 54842680 NFE2L2 JASPAR yes 118292630
chr1 54842672 54842678 SOX10 JASPAR yes 28979856
chr1 54842672 54842678 SOX10 JASPAR yes 118292631
chr1 54842717 54842737 ESR1 JASPAR yes 28979857
chr1 54842717 54842737 ESR1 JASPAR yes 118292632
chr1 54842721 54842736 AR JASPAR yes 28979858
chr1 54842721 54842736 AR JASPAR yes 118292633
chr1 54842721 54842738 NR3C1 JASPAR yes 28979859
chr1 54842721 54842738 NR3C2 JASPAR yes 28979860
chr1 54842721 54842738 NR3C1 JASPAR yes 118292634
chr1 54842721 54842738 NR3C2 JASPAR yes 118292635
chr1 54842722 54842737 ESR2 JASPAR yes 28979861
chr1 54842722 54842737 ESR2 JASPAR yes 118292636
chr1 54842723 54842738 AR JASPAR yes 28979862
chr1 54842723 54842738 AR JASPAR yes 118292637
chr1 54842728 54842740 TEAD1 JASPAR yes 28979863
chr1 54842728 54842740 TEAD1 JASPAR yes 118292638
chr1 54842740 54842751 ESRRA JASPAR yes 28979864
chr1 54842740 54842751 ESRRB JASPAR yes 28979865
chr1 54842740 54842751 ESRRA JASPAR yes 118292639
chr1 54842740 54842751 ESRRB JASPAR yes 118292640
chr1 54842744 54842748 LFA1 TRANSFAC yes 28979866
chr1 54842744 54842748 LFA1 TRANSFAC yes 118292641
chr1 54842747 54842751 YY1 TRANSFAC yes 28979867
chr1 54842747 54842751 YY1 TRANSFAC yes 118292642
SNP sites on vista1653[chr1:54842500-54842749]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 54842524 rs550016847 C T
JUND
320093
chr1 54842551 rs182727605 C G
JUND NEUROG2 PKNOX2 TAL1
320094
chr1 54842590 rs144337944 A G
BATF FOS FOSL1 FOSL2 JDP2 JUN JUNB JUND NFE2
320095
Genes possibly regulated by vista1653[chr1:54842500-54842749]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 54691105 54879152 - SSBP3 ENSG00000157216.11 54879152 0.79 1.0 730 63597
Expression level of Genes
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miRNAs possibly regulated by vista1653[chr1:54842500-54842749]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results