EnhancerDB
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  3. vista1676[chr1:55418708-55418921]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista1676[chr1:55418708-55418921]
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Tissue distribution of vista1676
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Transcription factor that possibly regulate vista1676[chr1:55418708-55418921]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 55418728 55419004 USF1 UCSC Txn Factor no Conserved 107805401
chr1 55418728 55418738 NFKB1 JASPAR yes 29009848
chr1 55418728 55418738 NFKB1 JASPAR yes 118293751
chr1 55418731 55418742 HOXC13 JASPAR yes 29009849
chr1 55418731 55418742 HOXC13 JASPAR yes 118293752
chr1 55418731 55418746 STAT1 JASPAR yes 29009850
chr1 55418731 55418746 STAT1 JASPAR yes 118293753
chr1 55418733 55418744 STAT1 JASPAR yes 29009851
chr1 55418733 55418744 STAT1 JASPAR yes 118293754
chr1 55418735 55418750 FOXP1 JASPAR yes 29009852
chr1 55418735 55418750 FOXP1 JASPAR yes 118293755
chr1 55418738 55418749 FOXP2 JASPAR yes 29009853
chr1 55418738 55418749 FOXP2 JASPAR yes 118293756
chr1 55418766 55418776 MAX JASPAR yes 29009854
chr1 55418766 55418776 MAX JASPAR yes 118293757
chr1 55418766 55418777 USF1 JASPAR yes 29009855
chr1 55418766 55418777 USF2 JASPAR yes 29009856
chr1 55418766 55418777 USF1 JASPAR yes 118293758
chr1 55418766 55418777 USF2 JASPAR yes 118293759
chr1 55418767 55418777 TFE3 JASPAR yes 29009857
chr1 55418767 55418777 TFEB JASPAR yes 29009858
chr1 55418767 55418777 TFE3 JASPAR yes 118293760
chr1 55418767 55418777 TFEB JASPAR yes 118293761
chr1 55418807 55418810 MYB TRANSFAC yes 29009859
chr1 55418807 55418810 MYB TRANSFAC yes 118293762
chr1 55418819 55418823 NFE TRANSFAC yes 29009860
chr1 55418819 55418823 NFE TRANSFAC yes 118293763
chr1 55418822 55418840 MAFF JASPAR yes 29009861
chr1 55418822 55418840 MAFF JASPAR yes 118293764
chr1 55418823 55418832 NKX2-8 JASPAR yes 29009862
chr1 55418823 55418832 NKX2-8 JASPAR yes 118293765
chr1 55418824 55418845 MAFG JASPAR yes 29009863
chr1 55418824 55418845 MAFG JASPAR yes 118293766
chr1 55418825 55418839 JUN JASPAR yes 29009864
chr1 55418825 55418839 JUN JASPAR yes 118293767
chr1 55418827 55418838 BATF JASPAR yes 29009865
chr1 55418827 55418838 BATF JASPAR yes 118293768
chr1 55418828 55418839 FOSL2 JASPAR yes 29009866
chr1 55418828 55418839 JUNB JASPAR yes 29009867
chr1 55418828 55418839 FOSL2 JASPAR yes 118293769
chr1 55418828 55418839 JUNB JASPAR yes 118293770
chr1 55418829 55418840 FOS JASPAR yes 29009868
chr1 55418829 55418840 FOSL1 JASPAR yes 29009869
chr1 55418829 55418840 JUND JASPAR yes 29009870
chr1 55418829 55418840 NFE2 JASPAR yes 29009871
chr1 55418829 55418840 FOS JASPAR yes 118293771
chr1 55418829 55418840 FOSL1 JASPAR yes 118293772
chr1 55418829 55418840 JUND JASPAR yes 118293773
chr1 55418829 55418840 NFE2 JASPAR yes 118293774
chr1 55418830 55418839 JDP2 JASPAR yes 29009872
chr1 55418830 55418839 JDP2 JASPAR yes 118293775
chr1 55418830 55418844 JUN JASPAR yes 29009873
chr1 55418830 55418844 JUN JASPAR yes 118293776
chr1 55418854 55418864 MAX JASPAR yes 29009874
chr1 55418854 55418864 MAX JASPAR yes 118293777
chr1 55418854 55418865 USF2 JASPAR yes 29009875
chr1 55418854 55418865 USF2 JASPAR yes 118293778
chr1 55418855 55418865 MAX JASPAR yes 29009876
chr1 55418855 55418865 MLXIPL JASPAR yes 29009877
chr1 55418855 55418865 MLX JASPAR yes 29009878
chr1 55418855 55418865 MNT JASPAR yes 29009879
chr1 55418855 55418865 SREBF2 JASPAR yes 29009880
chr1 55418855 55418865 TFE3 JASPAR yes 29009881
chr1 55418855 55418865 TFEB JASPAR yes 29009882
chr1 55418855 55418865 TFEC JASPAR yes 29009883
chr1 55418855 55418865 MAX JASPAR yes 118293779
chr1 55418855 55418865 MLXIPL JASPAR yes 118293780
chr1 55418855 55418865 MLX JASPAR yes 118293781
chr1 55418855 55418865 MNT JASPAR yes 118293782
chr1 55418855 55418865 SREBF2 JASPAR yes 118293783
chr1 55418855 55418865 TFE3 JASPAR yes 118293784
chr1 55418855 55418865 TFEB JASPAR yes 118293785
chr1 55418855 55418865 TFEC JASPAR yes 118293786
chr1 55418855 55418866 USF1 JASPAR yes 29009884
chr1 55418855 55418866 USF1 JASPAR yes 118293787
chr1 55418856 55418863 USF1 JASPAR yes 29009885
chr1 55418856 55418863 USF1 JASPAR yes 118293788
chr1 55418856 55418866 MAX JASPAR yes 29009886
chr1 55418856 55418866 MAX JASPAR yes 118293789
chr1 55418857 55418862 MYC TRANSFAC yes 29009887
chr1 55418857 55418862 USF1 TRANSFAC yes 29009888
chr1 55418857 55418862 USF2 TRANSFAC yes 29009889
chr1 55418857 55418862 MYC TRANSFAC yes 118293790
chr1 55418857 55418862 USF1 TRANSFAC yes 118293791
chr1 55418857 55418862 USF2 TRANSFAC yes 118293792
chr1 55418881 55418896 RFX5 JASPAR yes 29009890
chr1 55418881 55418896 RFX5 JASPAR yes 118293793
chr1 55418883 55418898 STAT1 JASPAR yes 29009891
chr1 55418883 55418898 STAT1 JASPAR yes 118293794
chr1 55418888 55418895 ETS1 TRANSFAC yes 29009892
chr1 55418888 55418895 ETS1 TRANSFAC yes 118293795
chr1 55418889 55418897 EHF JASPAR yes 29009893
chr1 55418889 55418897 EHF JASPAR yes 118293796
SNP sites on vista1676[chr1:55418708-55418921]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 55418738 rs112662894 C T
FOXP1 FOXP2 HOXC13 NFKB1 STAT1 USF1
323632
chr1 55418812 rs549210550 A T
USF1
323633
chr1 55418908 rs115941912 G A
USF1
323634
Genes possibly regulated by vista1676[chr1:55418708-55418921]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 55315306 55352891 - DHCR24 ENSG00000116133.7 55352891 0.91 0.99 740 34183
chr1 55446465 55457966 + TMEM61 ENSG00000143001.4 55446465 0.91 1.0 741 72456
chr1 55464606 55476556 + BSND ENSG00000162399.6 55464606 1.0 0.98 742 54315
chr1 55505221 55530525 + PCSK9 ENSG00000169174.9 55505221 0.96 1.0 743 13700
Expression level of Genes
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miRNAs possibly regulated by vista1676[chr1:55418708-55418921]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results