EnhancerDB
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  3. vista23299[chr16:85405119-85405354]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista23299[chr16:85405119-85405354]
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Tissue distribution of vista23299
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Transcription factor that possibly regulate vista23299[chr16:85405119-85405354]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr16 85405125 85405140 RFX5 JASPAR yes 12053286
chr16 85405125 85405140 RFX5 JASPAR yes 49407963
chr16 85405130 85405141 NRF1 JASPAR yes 12053287
chr16 85405130 85405141 NRF1 JASPAR yes 49407964
chr16 85405135 85405146 NRF1 JASPAR yes 12053288
chr16 85405135 85405146 NRF1 JASPAR yes 49407965
chr16 85405167 85405182 TFAP2A JASPAR yes 12053289
chr16 85405167 85405182 TFAP2A JASPAR yes 49407966
chr16 85405170 85405185 TFAP2A JASPAR yes 12053290
chr16 85405170 85405185 TFAP2A JASPAR yes 49407967
chr16 85405176 85405181 SP1 TRANSFAC yes 12053291
chr16 85405176 85405181 SP1 TRANSFAC yes 49407968
chr16 85405179 85405198 PAX5 JASPAR yes 12053292
chr16 85405179 85405198 PAX5 JASPAR yes 49407969
chr16 85405180 85405192 PKNOX1 JASPAR yes 12053293
chr16 85405180 85405192 PKNOX1 JASPAR yes 49407970
chr16 85405181 85405191 TFAP4 JASPAR yes 12053294
chr16 85405181 85405191 TFAP4 JASPAR yes 49407971
chr16 85405184 85405197 SMAD2 JASPAR yes 12053295
chr16 85405184 85405197 SMAD2 JASPAR yes 49407972
chr16 85405191 85405204 TFAP2A JASPAR yes 12053296
chr16 85405191 85405204 TFAP2B JASPAR yes 12053297
chr16 85405191 85405204 TFAP2C JASPAR yes 12053298
chr16 85405191 85405204 TFAP2A JASPAR yes 49407973
chr16 85405191 85405204 TFAP2B JASPAR yes 49407974
chr16 85405191 85405204 TFAP2C JASPAR yes 49407975
chr16 85405198 85405209 NFKB1 JASPAR yes 12053299
chr16 85405198 85405209 NFKB1 JASPAR yes 49407976
chr16 85405199 85405203 LFA1 TRANSFAC yes 12053300
chr16 85405199 85405203 LFA1 TRANSFAC yes 49407977
chr16 85405204 85405219 RFX5 JASPAR yes 12053301
chr16 85405204 85405219 RFX5 JASPAR yes 49407978
chr16 85405210 85405214 LFA1 TRANSFAC yes 12053302
chr16 85405210 85405214 LFA1 TRANSFAC yes 49407979
chr16 85405218 85405228 NHLH1 JASPAR yes 12053303
chr16 85405218 85405228 NHLH1 JASPAR yes 49407980
chr16 85405220 85405239 REST JASPAR yes 12053304
chr16 85405220 85405239 REST JASPAR yes 49407981
chr16 85405244 85405253 SOX9 JASPAR yes 12053305
chr16 85405244 85405253 SOX9 JASPAR yes 49407982
chr16 85405281 85405295 TLX1 JASPAR yes 12053306
chr16 85405281 85405295 TLX1 JASPAR yes 49407983
chr16 85405288 85405301 SMAD2 JASPAR yes 12053307
chr16 85405288 85405301 SMAD2 JASPAR yes 49407984
chr16 85405288 85405303 RFX5 JASPAR yes 12053308
chr16 85405288 85405303 RFX5 JASPAR yes 49407985
chr16 85405293 85405305 PKNOX2 JASPAR yes 12053309
chr16 85405293 85405305 PKNOX2 JASPAR yes 49407986
chr16 85405303 85405308 USF2 TRANSFAC yes 12053310
chr16 85405303 85405308 USF2 TRANSFAC yes 49407987
chr16 85405313 85405320 JUN TRANSFAC yes 12053311
chr16 85405313 85405320 JUN TRANSFAC yes 49407988
chr16 85405329 85405339 SP1 JASPAR yes 12053312
chr16 85405329 85405339 SP1 JASPAR yes 49407989
SNP sites on vista23299[chr16:85405119-85405354]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr16 85405201 rs116097230 G T
LFA1 NFKB1 TFAP2A TFAP2B TFAP2C
4621726
chr16 85405239 rs146783279 G T
REST
4621727
chr16 85405315 rs567429570 G A
JUN
4621728
chr16 85405347 rs76476359 C G no 4621729
Genes possibly regulated by vista23299[chr16:85405119-85405354]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr16 85391069 85393055 + RP11-680G10.1 ENSG00000261567.1 85391069 0.83 1.0 15130 85950
Expression level of Genes
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miRNAs possibly regulated by vista23299[chr16:85405119-85405354]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results