EnhancerDB
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  3. vista23478[chr16:88058800-88059189]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista23478[chr16:88058800-88059189]
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Tissue distribution of vista23478
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Transcription factor that possibly regulate vista23478[chr16:88058800-88059189]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr16 88058581 88059073 CTCF UCSC Txn Factor no Conserved 108221776
chr16 88058813 88058818 MYB TRANSFAC yes 12257775
chr16 88058813 88058818 MYB TRANSFAC yes 49416640
chr16 88058814 88058823 NKX2-8 JASPAR yes 12257776
chr16 88058814 88058823 NKX2-8 JASPAR yes 49416641
chr16 88058834 88058844 RELA JASPAR yes 12257777
chr16 88058834 88058844 REL JASPAR yes 12257778
chr16 88058834 88058844 RELA JASPAR yes 49416642
chr16 88058834 88058844 REL JASPAR yes 49416643
chr16 88058834 88058845 NFKB1 JASPAR yes 12257779
chr16 88058834 88058845 NFKB1 JASPAR yes 49416644
chr16 88058837 88058852 STAT1 JASPAR yes 12257780
chr16 88058837 88058852 STAT1 JASPAR yes 49416645
chr16 88058838 88058847 ELK4 JASPAR yes 12257781
chr16 88058838 88058847 ELK4 JASPAR yes 49416646
chr16 88058839 88058845 ETS1 JASPAR yes 12257782
chr16 88058839 88058845 ETS1 JASPAR yes 49416647
chr16 88058839 88058849 ELK1 JASPAR yes 12257783
chr16 88058839 88058849 ELK1 JASPAR yes 49416648
chr16 88058839 88058850 STAT1 JASPAR yes 12257784
chr16 88058839 88058850 STAT1 JASPAR yes 49416649
chr16 88058844 88058854 HMBOX1 JASPAR yes 12257785
chr16 88058844 88058854 HMBOX1 JASPAR yes 49416650
chr16 88058846 88058849 MYB TRANSFAC yes 12257786
chr16 88058846 88058849 MYB TRANSFAC yes 49416651
chr16 88058850 88058861 CEBPA JASPAR yes 12257787
chr16 88058850 88058861 CEBPA JASPAR yes 49416652
chr16 88058850 88058862 HLF JASPAR yes 12257788
chr16 88058850 88058862 HLF JASPAR yes 49416653
chr16 88058851 88058862 CEBPB JASPAR yes 12257789
chr16 88058851 88058862 CEBPB JASPAR yes 49416654
chr16 88058857 88058870 ZBTB18 JASPAR yes 12257790
chr16 88058857 88058870 ZBTB18 JASPAR yes 49416655
chr16 88058867 88058879 NHLH1 JASPAR yes 12257791
chr16 88058867 88058879 NHLH1 JASPAR yes 49416656
chr16 88058868 88058878 NHLH1 JASPAR yes 12257792
chr16 88058868 88058878 NHLH1 JASPAR yes 49416657
chr16 88058890 88058895 H4TF1 TRANSFAC yes 12257793
chr16 88058890 88058895 H4TF1 TRANSFAC yes 49416658
chr16 88058891 88058899 FEV JASPAR yes 12257794
chr16 88058891 88058899 FEV JASPAR yes 49416659
chr16 88058902 88058912 HOXA13 JASPAR yes 12257795
chr16 88058902 88058912 HOXB13 JASPAR yes 12257796
chr16 88058902 88058912 HOXA13 JASPAR yes 49416660
chr16 88058902 88058912 HOXB13 JASPAR yes 49416661
chr16 88058905 88058914 VENTX JASPAR yes 12257797
chr16 88058905 88058914 VENTX JASPAR yes 49416662
chr16 88058920 88058935 RFX5 JASPAR yes 12257798
chr16 88058920 88058935 RFX5 JASPAR yes 49416663
chr16 88058921 88058942 REST JASPAR yes 12257799
chr16 88058921 88058942 REST JASPAR yes 49416664
chr16 88058922 88058941 REST JASPAR yes 12257800
chr16 88058922 88058941 REST JASPAR yes 49416665
chr16 88058924 88058939 RUNX2 JASPAR yes 12257801
chr16 88058924 88058939 RUNX2 JASPAR yes 49416666
chr16 88058937 88058947 SP1 JASPAR yes 12257802
chr16 88058937 88058947 SP1 JASPAR yes 49416667
chr16 88058946 88058953 SPIB JASPAR yes 12257803
chr16 88058946 88058953 SPIB JASPAR yes 49416668
chr16 88058951 88058962 FOSL2 JASPAR yes 12257804
chr16 88058951 88058962 JUNB JASPAR yes 12257805
chr16 88058951 88058962 FOSL2 JASPAR yes 49416669
chr16 88058951 88058962 JUNB JASPAR yes 49416670
chr16 88058952 88058963 FOS JASPAR yes 12257806
chr16 88058952 88058963 FOSL1 JASPAR yes 12257807
chr16 88058952 88058963 JUND JASPAR yes 12257808
chr16 88058952 88058963 NFE2 JASPAR yes 12257809
chr16 88058952 88058963 FOS JASPAR yes 49416671
chr16 88058952 88058963 FOSL1 JASPAR yes 49416672
chr16 88058952 88058963 JUND JASPAR yes 49416673
chr16 88058952 88058963 NFE2 JASPAR yes 49416674
chr16 88058953 88058962 JDP2 JASPAR yes 12257810
chr16 88058953 88058962 JDP2 JASPAR yes 49416675
chr16 88058953 88058964 FOSL2 JASPAR yes 12257811
chr16 88058953 88058964 JUNB JASPAR yes 12257812
chr16 88058953 88058964 FOSL2 JASPAR yes 49416676
chr16 88058953 88058964 JUNB JASPAR yes 49416677
chr16 88058953 88058967 JUN JASPAR yes 12257813
chr16 88058953 88058967 JUN JASPAR yes 49416678
chr16 88058973 88058984 TFAP2A JASPAR yes 12257814
chr16 88058973 88058984 TFAP2B JASPAR yes 12257815
chr16 88058973 88058984 TFAP2C JASPAR yes 12257816
chr16 88058973 88058984 TFAP2A JASPAR yes 49416679
chr16 88058973 88058984 TFAP2B JASPAR yes 49416680
chr16 88058973 88058984 TFAP2C JASPAR yes 49416681
chr16 88058974 88058983 TFAP2A JASPAR yes 12257817
chr16 88058974 88058983 TFAP2A JASPAR yes 49416682
chr16 88058978 88058988 NFKB1 JASPAR yes 12257818
chr16 88058978 88058988 NFKB1 JASPAR yes 49416683
chr16 88058996 88059015 PAX5 JASPAR yes 12257819
chr16 88058996 88059015 PAX5 JASPAR yes 49416684
chr16 88059032 88059036 YY1 TRANSFAC yes 12257820
chr16 88059032 88059036 YY1 TRANSFAC yes 49416685
chr16 88059049 88059064 STAT2 JASPAR yes 12257821
chr16 88059049 88059064 STAT2 JASPAR yes 49416686
chr16 88059065 88059071 SP1 TRANSFAC yes 12257822
chr16 88059065 88059071 SP1 TRANSFAC yes 49416687
chr16 88059066 88059071 SP1 TRANSFAC yes 12257823
chr16 88059066 88059071 SP1 TRANSFAC yes 49416688
chr16 88059072 88059083 ELK4 JASPAR yes 12257824
chr16 88059072 88059083 FLI1 JASPAR yes 12257825
chr16 88059072 88059083 ELK4 JASPAR yes 49416689
chr16 88059072 88059083 FLI1 JASPAR yes 49416690
chr16 88059073 88059083 ERF JASPAR yes 12257826
chr16 88059073 88059083 ETS1 JASPAR yes 12257827
chr16 88059073 88059083 ERF JASPAR yes 49416691
chr16 88059073 88059083 ETS1 JASPAR yes 49416692
chr16 88059073 88059084 ETV2 JASPAR yes 12257828
chr16 88059073 88059084 ETV2 JASPAR yes 49416693
chr16 88059073 88059086 ELF1 JASPAR yes 12257829
chr16 88059073 88059086 ELF1 JASPAR yes 49416694
chr16 88059123 88059132 NKX3-2 JASPAR yes 12257830
chr16 88059123 88059132 NKX3-2 JASPAR yes 49416695
chr16 88059138 88059149 E2F6 JASPAR yes 12257831
chr16 88059138 88059149 E2F6 JASPAR yes 49416696
chr16 88059162 88059167 MYC TRANSFAC yes 12257832
chr16 88059162 88059167 MYC TRANSFAC yes 49416697
chr16 88059171 88059192 IRF1 JASPAR yes 12257833
chr16 88059171 88059192 IRF1 JASPAR yes 49416698
chr16 88059173 88059188 STAT2 JASPAR yes 12257834
chr16 88059173 88059188 STAT2 JASPAR yes 49416699
chr16 88059174 88059188 STAT1 JASPAR yes 12257835
chr16 88059174 88059188 STAT1 JASPAR yes 49416700
SNP sites on vista23478[chr16:88058800-88059189]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr16 88058806 rs142271882 A T
CTCF
4657730
chr16 88058845 rs575090316 G A
CTCF ELK1 ELK4 ETS1 HMBOX1 NFKB1 STAT1
4657731
chr16 88058889 rs138883939 AG A
CTCF
4657732
chr16 88058940 rs151255729 G A
CTCF REST SP1
4657733
chr16 88058942 rs140595438 C T
CTCF REST SP1
4657734
chr16 88058997 rs78607685 C T
CTCF PAX5
4657735
chr16 88059049 rs186431505 C G,T
CTCF STAT2
4657736
chr16 88059072 rs150473312 G T
CTCF ELK4 FLI1
4657737
chr16 88059120 rs118104199 C T no 4657738
chr16 88059131 rs534008125 T A,G
NKX3-2
4657739
chr16 88059144 rs72818522 C T
E2F6
4657740
Genes possibly regulated by vista23478[chr16:88058800-88059189]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr16 87921625 87970135 - CA5A ENSG00000174990.3 87970135 1.0 1.0 15151 11335
chr16 87982850 88110924 + BANP ENSG00000172530.15 87982850 0.68 1.0 15152 24050
Expression level of Genes
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miRNAs possibly regulated by vista23478[chr16:88058800-88059189]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr16 88535392 88535412 + hsa-miR-5189-3p MIMAT0027088 88519687 0.028818292564458444 0.916667 0.0 640
Expression level of miRNAs
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