EnhancerDB
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  3. vista2399[chr1:90223174-90223447]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista2399[chr1:90223174-90223447]
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Tissue distribution of vista2399
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Transcription factor that possibly regulate vista2399[chr1:90223174-90223447]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 90223189 90223193 LFA1 TRANSFAC yes 118325939
chr1 90223213 90223219 SOX10 JASPAR yes 118325940
chr1 90223216 90223229 ELF1 JASPAR yes 118325941
chr1 90223219 90223230 FLI1 JASPAR yes 118325942
chr1 90223220 90223228 EHF JASPAR yes 118325943
chr1 90223228 90223243 STAT1 JASPAR yes 118325944
chr1 90223235 90223242 SPI1 JASPAR yes 118325945
chr1 90223247 90223253 ZNF354C JASPAR yes 118325946
chr1 90223267 90223280 NFKB1 JASPAR yes 118325947
chr1 90223267 90223280 NFKB2 JASPAR yes 118325948
chr1 90223268 90223279 NFKB1 JASPAR yes 118325949
chr1 90223269 90223280 NFKB1 JASPAR yes 118325950
chr1 90223275 90223281 MZF1 JASPAR yes 118325951
chr1 90223276 90223290 PLAG1 JASPAR yes 118325952
chr1 90223279 90223300 ZNF263 JASPAR yes 118325953
chr1 90223288 90223309 ZNF263 JASPAR yes 118325954
chr1 90223290 90223299 SP1 TRANSFAC yes 118325955
chr1 90223293 90223299 NFE2 TRANSFAC yes 118325956
chr1 90223296 90223306 SP1 JASPAR yes 118325957
chr1 90223310 90223323 ELF1 JASPAR yes 118325958
chr1 90223313 90223323 GABPA JASPAR yes 118325959
chr1 90223313 90223324 ELK4 JASPAR yes 118325960
chr1 90223313 90223324 FLI1 JASPAR yes 118325961
chr1 90223319 90223334 MYBL2 JASPAR yes 118325962
chr1 90223340 90223344 NFE TRANSFAC yes 118325963
chr1 90223340 90223353 SMAD2 JASPAR yes 118325964
chr1 90223347 90223366 REST JASPAR yes 118325965
chr1 90223361 90223373 FOXI1 JASPAR yes 118325966
chr1 90223371 90223382 CEBPB JASPAR yes 118325967
chr1 90223371 90223384 ATF4 JASPAR yes 118325968
chr1 90223372 90223383 CEBPA JASPAR yes 118325969
chr1 90223376 90223390 SPIC JASPAR yes 118325970
chr1 90223377 90223390 ELF1 JASPAR yes 118325971
chr1 90223378 90223390 ELF1 JASPAR yes 118325972
chr1 90223378 90223390 ELF4 JASPAR yes 118325973
chr1 90223379 90223390 ETV2 JASPAR yes 118325974
chr1 90223380 90223390 ELK1 JASPAR yes 118325975
chr1 90223380 90223390 ELK3 JASPAR yes 118325976
chr1 90223380 90223390 ERF JASPAR yes 118325977
chr1 90223380 90223390 ERG JASPAR yes 118325978
chr1 90223380 90223390 ETS1 JASPAR yes 118325979
chr1 90223380 90223390 ETV1 JASPAR yes 118325980
chr1 90223380 90223390 ETV3 JASPAR yes 118325981
chr1 90223380 90223390 ETV4 JASPAR yes 118325982
chr1 90223380 90223390 ETV6 JASPAR yes 118325983
chr1 90223380 90223390 FEV JASPAR yes 118325984
chr1 90223380 90223390 FLI1 JASPAR yes 118325985
chr1 90223380 90223391 FLI1 JASPAR yes 118325986
chr1 90223381 90223389 EHF JASPAR yes 118325987
chr1 90223381 90223389 FEV JASPAR yes 118325988
chr1 90223382 90223389 SPI1 JASPAR yes 118325989
chr1 90223390 90223411 IRF1 JASPAR yes 118325990
chr1 90223394 90223399 H4TF1 TRANSFAC yes 118325991
chr1 90223396 90223417 IRF1 JASPAR yes 118325992
chr1 90223399 90223409 GABPA JASPAR yes 118325993
chr1 90223399 90223412 ELF1 JASPAR yes 118325994
chr1 90223399 90223413 SPIC JASPAR yes 118325995
chr1 90223402 90223407 ETS2 TRANSFAC yes 118325996
chr1 90223408 90223423 AR JASPAR yes 118325997
chr1 90223423 90223438 HSF1 JASPAR yes 118325998
chr1 90223424 90223437 HSF2 JASPAR yes 118325999
chr1 90223424 90223437 HSF4 JASPAR yes 118326000
SNP sites on vista2399[chr1:90223174-90223447]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 90223203 rs504265 A C,G,T no 470959
chr1 90223227 rs569092605 G A
EHF ELF1 FLI1
470960
chr1 90223255 rs4529694 G C no 470961
chr1 90223269 rs557574280 G C
NFKB1 NFKB2
470962
chr1 90223394 rs79555067 C T
H4TF1 IRF1
470963
chr1 90223400 rs519989 C A
ELF1 GABPA IRF1 SPIC
470964
Genes possibly regulated by vista2399[chr1:90223174-90223447]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 90286573 90402170 + LRRC8D ENSG00000171492.10 90286573 0.82 0.98 884 36874
Expression level of Genes
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miRNAs possibly regulated by vista2399[chr1:90223174-90223447]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results