EnhancerDB
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  3. vista25116[chr17:48642446-48642840]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista25116[chr17:48642446-48642840]
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Tissue distribution of vista25116
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Transcription factor that possibly regulate vista25116[chr17:48642446-48642840]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr17 48642441 48642453 YY1 JASPAR yes 21254493
chr17 48642441 48642453 YY1 JASPAR yes 54707993
chr17 48642444 48642450 YY1 JASPAR yes 21254494
chr17 48642444 48642450 YY1 JASPAR yes 54707994
chr17 48642446 48642459 SMAD2 JASPAR yes 21254495
chr17 48642446 48642459 SMAD2 JASPAR yes 54707995
chr17 48642478 48642489 NRF1 JASPAR yes 21254496
chr17 48642478 48642489 NRF1 JASPAR yes 54707996
chr17 48642479 48642490 NRF1 JASPAR yes 21254497
chr17 48642479 48642490 NRF1 JASPAR yes 54707997
chr17 48642483 48642494 NRF1 JASPAR yes 21254498
chr17 48642483 48642494 NRF1 JASPAR yes 54707998
chr17 48642534 48642540 JUN TRANSFAC yes 21254499
chr17 48642534 48642540 JUN TRANSFAC yes 54707999
chr17 48642541 48642546 H4TF1 TRANSFAC yes 21254500
chr17 48642541 48642546 H4TF1 TRANSFAC yes 54708000
chr17 48642552 48642556 YY1 TRANSFAC yes 21254501
chr17 48642552 48642556 YY1 TRANSFAC yes 54708001
chr17 48642612 48642616 NFE TRANSFAC yes 21254502
chr17 48642612 48642616 NFE TRANSFAC yes 54708002
chr17 48642643 48642658 STAT2 JASPAR yes 21254503
chr17 48642643 48642658 STAT2 JASPAR yes 54708003
chr17 48642644 48642658 STAT1 JASPAR yes 21254504
chr17 48642644 48642658 STAT1 JASPAR yes 54708004
chr17 48642677 48642687 MZF1 JASPAR yes 21254505
chr17 48642677 48642687 MZF1 JASPAR yes 54708005
chr17 48642679 48642693 PLAG1 JASPAR yes 21254506
chr17 48642679 48642693 PLAG1 JASPAR yes 54708006
chr17 48642689 48642708 PAX5 JASPAR yes 21254507
chr17 48642689 48642708 PAX5 JASPAR yes 54708007
chr17 48642692 48642709 PAX1 JASPAR yes 21254508
chr17 48642692 48642709 PAX1 JASPAR yes 54708008
chr17 48642694 48642708 PAX6 JASPAR yes 21254509
chr17 48642694 48642708 PAX6 JASPAR yes 54708009
chr17 48642706 48642716 ZNF740 JASPAR yes 21254510
chr17 48642706 48642716 ZNF740 JASPAR yes 54708010
chr17 48642707 48642717 MZF1 JASPAR yes 21254511
chr17 48642707 48642717 MZF1 JASPAR yes 54708011
chr17 48642727 48642747 RREB1 JASPAR yes 21254512
chr17 48642727 48642747 RREB1 JASPAR yes 54708012
chr17 48642729 48642744 RUNX2 JASPAR yes 21254513
chr17 48642729 48642744 RUNX2 JASPAR yes 54708013
chr17 48642732 48642752 RREB1 JASPAR yes 21254514
chr17 48642732 48642752 RREB1 JASPAR yes 54708014
chr17 48642733 48642753 RREB1 JASPAR yes 21254515
chr17 48642733 48642753 RREB1 JASPAR yes 54708015
chr17 48642735 48642755 RREB1 JASPAR yes 21254516
chr17 48642735 48642755 RREB1 JASPAR yes 54708016
chr17 48642740 48642745 SP1 TRANSFAC yes 21254517
chr17 48642740 48642745 SP1 TRANSFAC yes 54708017
chr17 48642742 48642752 SP1 JASPAR yes 21254518
chr17 48642742 48642752 SP1 JASPAR yes 54708018
chr17 48642743 48642751 SP1 TRANSFAC yes 21254519
chr17 48642743 48642751 SP1 TRANSFAC yes 54708019
chr17 48642744 48642749 SP1 TRANSFAC yes 21254520
chr17 48642744 48642749 SP1 TRANSFAC yes 54708020
chr17 48642745 48642750 SP1 TRANSFAC yes 21254521
chr17 48642745 48642750 SP1 TRANSFAC yes 54708021
chr17 48642745 48642751 SP1 TRANSFAC yes 21254522
chr17 48642745 48642751 SP1 TRANSFAC yes 54708022
chr17 48642760 48642773 NFKB2 JASPAR yes 21254523
chr17 48642760 48642773 NFKB2 JASPAR yes 54708023
chr17 48642761 48642774 NFKB1 JASPAR yes 21254524
chr17 48642761 48642774 NFKB2 JASPAR yes 21254525
chr17 48642761 48642774 NFKB1 JASPAR yes 54708024
chr17 48642761 48642774 NFKB2 JASPAR yes 54708025
chr17 48642762 48642772 NFKB1 JASPAR yes 21254526
chr17 48642762 48642772 RELA JASPAR yes 21254527
chr17 48642762 48642772 NFKB1 JASPAR yes 54708026
chr17 48642762 48642772 RELA JASPAR yes 54708027
chr17 48642762 48642773 NFKB1 JASPAR yes 21254528
chr17 48642762 48642773 NFKB1 JASPAR yes 54708028
chr17 48642762 48642775 NFKB1 JASPAR yes 21254529
chr17 48642762 48642775 NFKB2 JASPAR yes 21254530
chr17 48642762 48642775 NFKB1 JASPAR yes 54708029
chr17 48642762 48642775 NFKB2 JASPAR yes 54708030
chr17 48642763 48642772 NF-kappaB TRANSFAC yes 21254531
chr17 48642763 48642772 NF-kappaB TRANSFAC yes 54708031
chr17 48642763 48642773 NFKB1 JASPAR yes 21254532
chr17 48642763 48642773 RELA JASPAR yes 21254533
chr17 48642763 48642773 NFKB1 JASPAR yes 54708032
chr17 48642763 48642773 RELA JASPAR yes 54708033
chr17 48642763 48642774 NFKB1 JASPAR yes 21254534
chr17 48642763 48642774 NFKB1 JASPAR yes 54708034
chr17 48642764 48642774 RELA JASPAR yes 21254535
chr17 48642764 48642774 REL JASPAR yes 21254536
chr17 48642764 48642774 RELA JASPAR yes 54708035
chr17 48642764 48642774 REL JASPAR yes 54708036
chr17 48642770 48642784 TCF7L2 JASPAR yes 21254537
chr17 48642770 48642784 TCF7L2 JASPAR yes 54708037
chr17 48642789 48642795 SP1 TRANSFAC yes 21254538
chr17 48642789 48642795 SP1 TRANSFAC yes 54708038
chr17 48642790 48642795 SP1 TRANSFAC yes 21254539
chr17 48642790 48642795 SP1 TRANSFAC yes 54708039
chr17 48642802 48642819 ZNF410 JASPAR yes 21254540
chr17 48642802 48642819 ZNF410 JASPAR yes 54708040
chr17 48642813 48642827 EBF1 JASPAR yes 21254541
chr17 48642813 48642827 EBF1 JASPAR yes 54708041
chr17 48642828 48642842 IRF8 JASPAR yes 21254542
chr17 48642828 48642842 IRF8 JASPAR yes 54708042
SNP sites on vista25116[chr17:48642446-48642840]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr17 48642487 rs576783821 C T
NRF1
4923981
chr17 48642490 rs552998976 G A
NRF1
4923982
chr17 48642492 rs145576729 G GCA
NRF1
4923983
chr17 48642492 rs772971890 G GCA
NRF1
4923984
chr17 48642504 rs573021 G A no 4923985
chr17 48642693 rs198538 C T
PAX1 PAX5 PLAG1
4923986
chr17 48642748 rs9898032 C G
RREB1 SP1
4923987
Genes possibly regulated by vista25116[chr17:48642446-48642840]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr17 48541857 48546327 - CHAD ENSG00000136457.5 48546327 0.91 1.0 16036 3881
chr17 48556161 48563336 + RSAD1 ENSG00000136444.5 48556161 0.63 1.0 16037 13715
chr17 48585745 48608862 + MYCBPAP ENSG00000136449.9 48585745 0.86 0.99 16038 43299
chr17 48609904 48621111 + EPN3 ENSG00000049283.13 48609904 0.95 1.0 16039 67458
chr17 48620419 48633213 + SPATA20 ENSG00000006282.15 48620419 0.74 1.0 16040 77973
chr17 48638429 48704835 + CACNA1G ENSG00000006283.13 48638429 0.91 0.99 16041 95983
chr17 48712138 48769613 + ABCC3 ENSG00000108846.11 48712138 0.87 1.0 16042 30702
Expression level of Genes
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miRNAs possibly regulated by vista25116[chr17:48642446-48642840]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results