EnhancerDB
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  3. vista25264[chr17:55979553-55979719]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista25264[chr17:55979553-55979719]
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Tissue distribution of vista25264
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Transcription factor that possibly regulate vista25264[chr17:55979553-55979719]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr17 55979511 55979763 ESR1 UCSC Txn Factor no Conserved 108274729
chr17 55979547 55979894 RUNX3 UCSC Txn Factor no Conserved 108274736
chr17 55979550 55979811 PAX5 UCSC Txn Factor no Conserved 108274738
chr17 55979579 55979837 BATF UCSC Txn Factor no Conserved 108274748
chr17 55979548 55979563 FOXP1 JASPAR yes 21261178
chr17 55979548 55979563 FOXP1 JASPAR yes 54997149
chr17 55979550 55979571 IRF1 JASPAR yes 21261179
chr17 55979550 55979571 IRF1 JASPAR yes 54997150
chr17 55979553 55979568 FOXP1 JASPAR yes 21261180
chr17 55979553 55979568 FOXP1 JASPAR yes 54997151
chr17 55979554 55979569 STAT2 JASPAR yes 21261181
chr17 55979554 55979569 STAT2 JASPAR yes 54997152
chr17 55979555 55979570 FOXP1 JASPAR yes 21261182
chr17 55979555 55979570 FOXP1 JASPAR yes 54997153
chr17 55979555 55979576 IRF1 JASPAR yes 21261183
chr17 55979555 55979576 IRF1 JASPAR yes 54997154
chr17 55979556 55979577 IRF1 JASPAR yes 21261184
chr17 55979556 55979577 IRF1 JASPAR yes 54997155
chr17 55979557 55979569 FOXC2 JASPAR yes 21261185
chr17 55979557 55979569 FOXC2 JASPAR yes 54997156
chr17 55979557 55979577 RREB1 JASPAR yes 21261186
chr17 55979557 55979577 RREB1 JASPAR yes 54997157
chr17 55979558 55979569 FOXP2 JASPAR yes 21261187
chr17 55979558 55979569 FOXP2 JASPAR yes 54997158
chr17 55979562 55979577 FOXP1 JASPAR yes 21261188
chr17 55979562 55979577 FOXP1 JASPAR yes 54997159
chr17 55979562 55979582 RREB1 JASPAR yes 21261189
chr17 55979562 55979582 RREB1 JASPAR yes 54997160
chr17 55979562 55979583 IRF1 JASPAR yes 21261190
chr17 55979562 55979583 IRF1 JASPAR yes 54997161
chr17 55979563 55979584 IRF1 JASPAR yes 21261191
chr17 55979563 55979584 IRF1 JASPAR yes 54997162
chr17 55979564 55979584 RREB1 JASPAR yes 21261192
chr17 55979564 55979584 RREB1 JASPAR yes 54997163
chr17 55979569 55979584 FOXP1 JASPAR yes 21261193
chr17 55979569 55979584 FOXP1 JASPAR yes 54997164
chr17 55979569 55979589 RREB1 JASPAR yes 21261194
chr17 55979569 55979589 RREB1 JASPAR yes 54997165
chr17 55979569 55979590 IRF1 JASPAR yes 21261195
chr17 55979569 55979590 IRF1 JASPAR yes 54997166
chr17 55979571 55979591 RREB1 JASPAR yes 21261196
chr17 55979571 55979591 RREB1 JASPAR yes 54997167
chr17 55979585 55979601 ZNF143 JASPAR yes 21261197
chr17 55979585 55979601 ZNF143 JASPAR yes 54997168
chr17 55979615 55979625 SP1 JASPAR yes 21261198
chr17 55979615 55979625 SP1 JASPAR yes 54997169
chr17 55979617 55979622 SP1 TRANSFAC yes 21261199
chr17 55979617 55979622 SP1 TRANSFAC yes 54997170
chr17 55979617 55979629 HINFP JASPAR yes 21261200
chr17 55979617 55979629 HINFP JASPAR yes 54997171
chr17 55979618 55979638 ESR1 JASPAR yes 21261201
chr17 55979618 55979638 ESR1 JASPAR yes 54997172
chr17 55979622 55979639 ESR1 JASPAR yes 21261202
chr17 55979622 55979639 ESR1 JASPAR yes 54997173
chr17 55979622 55979640 ESR1 JASPAR yes 21261203
chr17 55979622 55979640 ESR2 JASPAR yes 21261204
chr17 55979622 55979640 ESR1 JASPAR yes 54997174
chr17 55979622 55979640 ESR2 JASPAR yes 54997175
chr17 55979623 55979638 ESR2 JASPAR yes 21261205
chr17 55979623 55979638 ESR2 JASPAR yes 54997176
chr17 55979623 55979643 ESR1 JASPAR yes 21261206
chr17 55979623 55979643 ESR1 JASPAR yes 54997177
chr17 55979641 55979651 SREBF1 JASPAR yes 21261207
chr17 55979641 55979651 SREBF2 JASPAR yes 21261208
chr17 55979642 55979650 MGA JASPAR yes 21261209
chr17 55979661 55979680 PAX5 JASPAR yes 21261210
chr17 55979663 55979667 LFA1 TRANSFAC yes 21261211
chr17 55979685 55979706 IRF1 JASPAR yes 21261212
chr17 55979689 55979704 PRDM1 JASPAR yes 21261213
chr17 55979701 55979712 DMRT3 JASPAR yes 21261214
SNP sites on vista25264[chr17:55979553-55979719]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr17 55979554 rs11420183 G GA
ESR1 FOXP1 IRF1 PAX5 RUNX3 STAT2
4954192
chr17 55979554 rs547756164 G GA
ESR1 FOXP1 IRF1 PAX5 RUNX3 STAT2
4954193
chr17 55979566 rs552317546 C A
ESR1 FOXC2 FOXP1 FOXP2 IRF1 PAX5 RREB1 RUNX3 STAT2
4954194
chr17 55979578 rs570548614 A C
ESR1 FOXP1 IRF1 PAX5 RREB1 RUNX3
4954195
chr17 55979622 rs35174258 G A
BATF ESR1 ESR2 HINFP PAX5 RUNX3 SP1
4954196
chr17 55979686 rs73314254 T C
BATF ESR1 IRF1 PAX5 RUNX3
4954197
chr17 55979696 rs73992370 A C,G
BATF ESR1 IRF1 PAX5 PRDM1 RUNX3
4954198
chr17 55979702 rs139932677 G A,T
BATF DMRT3 ESR1 IRF1 PAX5 PRDM1 RUNX3
4954199
Genes possibly regulated by vista25264[chr17:55979553-55979719]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr17 55916842 55927417 - MRPS23 ENSG00000181610.8 55927417 0.7 0.99 16074 47864
chr17 55938604 56032684 - CUEDC1 ENSG00000180891.8 56032684 0.72 1.0 16075 47035
chr17 56048910 56065620 - VEZF1 ENSG00000136451.4 56065620 0.72 1.0 16076 14099
Expression level of Genes
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miRNAs possibly regulated by vista25264[chr17:55979553-55979719]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results