EnhancerDB
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  3. vista25340[chr17:57829892-57830070]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista25340[chr17:57829892-57830070]
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Tissue distribution of vista25340
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Transcription factor that possibly regulate vista25340[chr17:57829892-57830070]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr17 57829888 57829904 SRF JASPAR yes 21264757
chr17 57829888 57829904 SRF JASPAR yes 55077149
chr17 57829889 57829901 SRF JASPAR yes 21264758
chr17 57829889 57829901 SRF JASPAR yes 55077150
chr17 57829889 57829905 POU4F2 JASPAR yes 21264759
chr17 57829889 57829905 POU4F2 JASPAR yes 55077151
chr17 57829905 57829909 TEAD2 TRANSFAC yes 21264760
chr17 57829905 57829909 TEAD2 TRANSFAC yes 55077152
chr17 57829905 57829910 TBP TRANSFAC yes 21264761
chr17 57829905 57829910 TBP TRANSFAC yes 55077153
chr17 57829905 57829911 TFIID TRANSFAC yes 21264762
chr17 57829905 57829911 TFIID TRANSFAC yes 55077154
chr17 57829907 57829913 TBP TRANSFAC yes 21264763
chr17 57829907 57829913 TBP TRANSFAC yes 55077155
chr17 57829907 57829928 IRF1 JASPAR yes 21264764
chr17 57829907 57829928 IRF1 JASPAR yes 55077156
chr17 57829913 57829934 IRF1 JASPAR yes 21264765
chr17 57829913 57829934 IRF1 JASPAR yes 55077157
chr17 57829917 57829932 FOXP1 JASPAR yes 21264766
chr17 57829917 57829932 FOXP1 JASPAR yes 55077158
chr17 57829920 57829941 IRF1 JASPAR yes 21264767
chr17 57829920 57829941 IRF1 JASPAR yes 55077159
chr17 57829924 57829939 PRDM1 JASPAR yes 21264768
chr17 57829924 57829939 PRDM1 JASPAR yes 55077160
chr17 57829948 57829962 SPI1 JASPAR yes 21264769
chr17 57829948 57829962 SPI1 JASPAR yes 55077161
chr17 57829977 57829981 NFE TRANSFAC yes 21264770
chr17 57829977 57829981 NFE TRANSFAC yes 55077162
chr17 57829984 57829992 MEIS2 JASPAR yes 21264771
chr17 57829984 57829992 MEIS3 JASPAR yes 21264772
chr17 57829984 57829992 MEIS2 JASPAR yes 55077163
chr17 57829984 57829992 MEIS3 JASPAR yes 55077164
chr17 57829987 57829997 GABPA JASPAR yes 21264773
chr17 57829987 57829997 GABPA JASPAR yes 55077165
chr17 57829987 57830005 NR3C1 JASPAR yes 21264774
chr17 57829987 57830005 NR3C1 JASPAR yes 55077166
chr17 57829994 57830012 IRF2 JASPAR yes 21264775
chr17 57829994 57830012 IRF2 JASPAR yes 55077167
chr17 57829995 57830016 IRF1 JASPAR yes 21264776
chr17 57829995 57830016 IRF1 JASPAR yes 55077168
chr17 57829997 57830012 STAT2 JASPAR yes 21264777
chr17 57829997 57830012 STAT2 JASPAR yes 55077169
chr17 57829999 57830013 IRF8 JASPAR yes 21264778
chr17 57829999 57830013 IRF8 JASPAR yes 55077170
chr17 57830014 57830017 MYB TRANSFAC yes 21264779
chr17 57830014 57830017 MYB TRANSFAC yes 55077171
chr17 57830029 57830046 BCL6B JASPAR yes 21264780
chr17 57830029 57830046 BCL6B JASPAR yes 55077172
chr17 57830033 57830040 SPIB JASPAR yes 21264781
chr17 57830033 57830040 SPIB JASPAR yes 55077173
chr17 57830050 57830061 HOXC13 JASPAR yes 21264782
chr17 57830050 57830061 HOXC13 JASPAR yes 55077174
chr17 57830063 57830075 YY1 JASPAR yes 21264783
chr17 57830063 57830075 YY1 JASPAR yes 55077175
chr17 57830068 57830072 YY1 TRANSFAC yes 21264784
chr17 57830068 57830072 YY1 TRANSFAC yes 55077176
SNP sites on vista25340[chr17:57829892-57830070]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr17 57829992 rs72840522 G A
GABPA MEIS2 MEIS3 NR3C1
4961429
chr17 57829994 rs114650851 A G
GABPA IRF2 NR3C1
4961430
Genes possibly regulated by vista25340[chr17:57829892-57830070]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr17 57751997 57784987 - PTRH2 ENSG00000141378.13 57784987 0.88 1.0 16105 55095
chr17 57784553 57919616 + VMP1 ENSG00000062716.6 57784553 0.71 0.99 16106 54661
Expression level of Genes
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miRNAs possibly regulated by vista25340[chr17:57829892-57830070]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr17 57918672 57918692 + hsa-miR-21-3p MIMAT0004494 57915291 0.01917162484550602 0.710898 0.678791 730
Expression level of miRNAs
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