EnhancerDB
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  3. vista27610[chr18:56208933-56209328]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista27610[chr18:56208933-56209328]
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Tissue distribution of vista27610
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Transcription factor that possibly regulate vista27610[chr18:56208933-56209328]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr18 56208849 56209675 IKZF1 UCSC Txn Factor no Conserved 108338430
chr18 56208903 56209375 NFIC UCSC Txn Factor no Conserved 108338432
chr18 56208927 56209327 FOS UCSC Txn Factor no Conserved 108338434
chr18 56208956 56209296 RUNX3 UCSC Txn Factor no Conserved 108338441
chr18 56208967 56209298 ATF2 UCSC Txn Factor no Conserved 108338445
chr18 56208930 56208939 LEF1 TRANSFAC yes 42715519
chr18 56208930 56208939 LEF1 TRANSFAC yes 110956995
chr18 56208958 56208972 GATA2 JASPAR yes 42715520
chr18 56208958 56208972 GATA2 JASPAR yes 110956996
chr18 56208960 56208966 GATA1 TRANSFAC yes 42715521
chr18 56208960 56208966 GATA1 TRANSFAC yes 110956997
chr18 56208976 56208987 PROP1 JASPAR yes 42715522
chr18 56208976 56208987 PROP1 JASPAR yes 110956998
chr18 56208983 56208998 NFYB JASPAR yes 42715523
chr18 56208983 56208998 NFYB JASPAR yes 110956999
chr18 56208985 56209001 NFYA JASPAR yes 42715524
chr18 56208985 56209001 NFYA JASPAR yes 110957000
chr18 56208986 56209004 NFYA JASPAR yes 42715525
chr18 56208986 56209004 NFYA JASPAR yes 110957001
chr18 56208987 56208990 MYB TRANSFAC yes 42715526
chr18 56208987 56208990 MYB TRANSFAC yes 110957002
chr18 56208990 56208994 H1TF2 TRANSFAC yes 42715527
chr18 56208990 56208994 NFE TRANSFAC yes 42715528
chr18 56208990 56208994 SRF TRANSFAC yes 42715529
chr18 56208990 56208994 H1TF2 TRANSFAC yes 110957003
chr18 56208990 56208994 NFE TRANSFAC yes 110957004
chr18 56208990 56208994 SRF TRANSFAC yes 110957005
chr18 56209000 56209014 TCF7L2 JASPAR yes 42715530
chr18 56209000 56209014 TCF7L2 JASPAR yes 110957006
chr18 56209020 56209023 MYB TRANSFAC yes 42715531
chr18 56209020 56209023 MYB TRANSFAC yes 110957007
chr18 56209033 56209048 TP53 JASPAR yes 42715532
chr18 56209033 56209048 TP53 JASPAR yes 110957008
chr18 56209035 56209039 YY1 TRANSFAC yes 42715533
chr18 56209035 56209039 YY1 TRANSFAC yes 110957009
chr18 56209058 56209078 TP53 JASPAR yes 42715534
chr18 56209058 56209078 TP53 JASPAR yes 110957010
chr18 56209100 56209115 PRDM1 JASPAR yes 42715535
chr18 56209100 56209115 PRDM1 JASPAR yes 110957011
chr18 56209102 56209123 IRF1 JASPAR yes 42715536
chr18 56209102 56209123 IRF1 JASPAR yes 110957012
chr18 56209106 56209120 STAT1 JASPAR yes 42715537
chr18 56209106 56209120 STAT1 JASPAR yes 110957013
chr18 56209106 56209121 PRDM1 JASPAR yes 42715538
chr18 56209106 56209121 STAT2 JASPAR yes 42715539
chr18 56209106 56209121 PRDM1 JASPAR yes 110957014
chr18 56209106 56209121 STAT2 JASPAR yes 110957015
chr18 56209113 56209128 RUNX2 JASPAR yes 42715540
chr18 56209113 56209128 RUNX2 JASPAR yes 110957016
chr18 56209114 56209123 RUNX2 JASPAR yes 42715541
chr18 56209114 56209123 RUNX2 JASPAR yes 110957017
chr18 56209114 56209124 RUNX3 JASPAR yes 42715542
chr18 56209114 56209124 RUNX3 JASPAR yes 110957018
chr18 56209114 56209125 RUNX1 JASPAR yes 42715543
chr18 56209114 56209125 RUNX1 JASPAR yes 110957019
chr18 56209120 56209133 SMAD2 JASPAR yes 42715544
chr18 56209120 56209133 SMAD2 JASPAR yes 110957020
chr18 56209121 56209134 EOMES JASPAR yes 42715545
chr18 56209121 56209134 EOMES JASPAR yes 110957021
chr18 56209123 56209133 TBR1 JASPAR yes 42715546
chr18 56209123 56209133 TBR1 JASPAR yes 110957022
chr18 56209123 56209134 TBX20 JASPAR yes 42715547
chr18 56209123 56209134 TBX2 JASPAR yes 42715548
chr18 56209123 56209134 TBX20 JASPAR yes 110957023
chr18 56209123 56209134 TBX2 JASPAR yes 110957024
chr18 56209124 56209134 TBX21 JASPAR yes 42715549
chr18 56209124 56209134 TBX21 JASPAR yes 110957025
chr18 56209125 56209133 MGA JASPAR yes 42715550
chr18 56209125 56209133 TBX15 JASPAR yes 42715551
chr18 56209125 56209133 TBX1 JASPAR yes 42715552
chr18 56209125 56209133 TBX4 JASPAR yes 42715553
chr18 56209125 56209133 TBX5 JASPAR yes 42715554
chr18 56209125 56209133 MGA JASPAR yes 110957026
chr18 56209125 56209133 TBX15 JASPAR yes 110957027
chr18 56209125 56209133 TBX1 JASPAR yes 110957028
chr18 56209125 56209133 TBX4 JASPAR yes 110957029
chr18 56209125 56209133 TBX5 JASPAR yes 110957030
chr18 56209135 56209139 H1TF2 TRANSFAC yes 42715555
chr18 56209135 56209139 NFE TRANSFAC yes 42715556
chr18 56209135 56209139 SRF TRANSFAC yes 42715557
chr18 56209135 56209139 H1TF2 TRANSFAC yes 110957031
chr18 56209135 56209139 NFE TRANSFAC yes 110957032
chr18 56209135 56209139 SRF TRANSFAC yes 110957033
chr18 56209135 56209146 BATF JASPAR yes 42715558
chr18 56209135 56209146 BATF JASPAR yes 110957034
chr18 56209136 56209147 FOSL2 JASPAR yes 42715559
chr18 56209136 56209147 JUNB JASPAR yes 42715560
chr18 56209136 56209147 FOSL2 JASPAR yes 110957035
chr18 56209136 56209147 JUNB JASPAR yes 110957036
chr18 56209137 56209148 FOS JASPAR yes 42715561
chr18 56209137 56209148 FOSL1 JASPAR yes 42715562
chr18 56209137 56209148 JUND JASPAR yes 42715563
chr18 56209137 56209148 FOS JASPAR yes 110957037
chr18 56209137 56209148 FOSL1 JASPAR yes 110957038
chr18 56209137 56209148 JUND JASPAR yes 110957039
chr18 56209138 56209147 JDP2 JASPAR yes 42715564
chr18 56209138 56209147 JDP2 JASPAR yes 110957040
chr18 56209138 56209149 JUNB JASPAR yes 42715565
chr18 56209138 56209149 JUNB JASPAR yes 110957041
chr18 56209138 56209152 JUN JASPAR yes 42715566
chr18 56209138 56209152 JUN JASPAR yes 110957042
chr18 56209139 56209146 JUN TRANSFAC yes 42715567
chr18 56209139 56209146 JUN TRANSFAC yes 110957043
chr18 56209139 56209148 SMAD4 TRANSFAC yes 42715568
chr18 56209139 56209148 SMAD4 TRANSFAC yes 110957044
chr18 56209139 56209150 BATF JASPAR yes 42715569
chr18 56209139 56209150 BATF JASPAR yes 110957045
chr18 56209165 56209170 H4TF1 TRANSFAC yes 42715570
chr18 56209165 56209170 H4TF1 TRANSFAC yes 110957046
chr18 56209170 56209180 HMBOX1 JASPAR yes 42715571
chr18 56209170 56209180 HMBOX1 JASPAR yes 110957047
chr18 56209180 56209191 NFIL3 JASPAR yes 42715572
chr18 56209180 56209191 NFIL3 JASPAR yes 110957048
chr18 56209181 56209185 YY1 TRANSFAC yes 42715573
chr18 56209181 56209185 YY1 TRANSFAC yes 110957049
chr18 56209238 56209256 MAFF JASPAR yes 42715574
chr18 56209238 56209256 MAFF JASPAR yes 110957050
chr18 56209257 56209275 MAFF JASPAR yes 42715575
chr18 56209257 56209275 MAFF JASPAR yes 110957051
chr18 56209259 56209270 NRL JASPAR yes 42715576
chr18 56209259 56209270 NRL JASPAR yes 110957052
chr18 56209259 56209274 MAFK JASPAR yes 42715577
chr18 56209259 56209274 MAFK JASPAR yes 110957053
chr18 56209273 56209281 FEV JASPAR yes 42715578
chr18 56209273 56209281 FEV JASPAR yes 110957054
chr18 56209275 56209280 ETS2 TRANSFAC yes 42715579
chr18 56209275 56209280 ETS2 TRANSFAC yes 110957055
chr18 56209283 56209303 PPARG JASPAR yes 42715580
chr18 56209283 56209303 PPARG JASPAR yes 110957056
SNP sites on vista27610[chr18:56208933-56209328]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr18 56208999 rs200144023 GT G
ATF2 FOS IKZF1 NFIC NFYA RUNX3
5285614
chr18 56209052 rs117617851 C T
ATF2 FOS IKZF1 NFIC RUNX3
5285615
chr18 56209079 rs568488247 C T
ATF2 FOS IKZF1 NFIC RUNX3
5285616
chr18 56209084 rs529248661 C G
ATF2 FOS IKZF1 NFIC RUNX3
5285617
chr18 56209114 rs75027999 G A
ATF2 FOS IKZF1 IRF1 NFIC PRDM1 RUNX1 RUNX2 RUNX3 STAT1 STAT2
5285618
Genes possibly regulated by vista27610[chr18:56208933-56209328]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr18 56148479 56296189 - ALPK2 ENSG00000198796.6 56296189 0.97 0.97 16612 13139
Expression level of Genes
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miRNAs possibly regulated by vista27610[chr18:56208933-56209328]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results