EnhancerDB
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  3. vista28571[chr19:10352370-10352740]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28571[chr19:10352370-10352740]
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Tissue distribution of vista28571
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Transcription factor that possibly regulate vista28571[chr19:10352370-10352740]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 10352444 10352448 LFA1 TRANSFAC yes 70801477
chr19 10352444 10352448 LFA1 TRANSFAC yes 112416351
chr19 10352450 10352462 IRF1 JASPAR yes 70801478
chr19 10352450 10352462 IRF1 JASPAR yes 112416352
chr19 10352465 10352471 MYC TRANSFAC yes 70801479
chr19 10352465 10352471 MYC TRANSFAC yes 112416353
chr19 10352470 10352476 TBP TRANSFAC yes 70801480
chr19 10352470 10352476 TBP TRANSFAC yes 112416354
chr19 10352476 10352487 CDX2 JASPAR yes 70801481
chr19 10352476 10352487 CDX2 JASPAR yes 112416355
chr19 10352477 10352481 TEAD2 TRANSFAC yes 70801482
chr19 10352477 10352481 TEAD2 TRANSFAC yes 112416356
chr19 10352477 10352488 HOXA10 JASPAR yes 70801483
chr19 10352477 10352488 HOXA10 JASPAR yes 112416357
chr19 10352478 10352487 CDX1 JASPAR yes 70801484
chr19 10352478 10352487 CDX1 JASPAR yes 112416358
chr19 10352478 10352488 HOXA13 JASPAR yes 70801485
chr19 10352478 10352488 HOXB13 JASPAR yes 70801486
chr19 10352478 10352488 HOXD13 JASPAR yes 70801487
chr19 10352478 10352488 HOXA13 JASPAR yes 112416359
chr19 10352478 10352488 HOXB13 JASPAR yes 112416360
chr19 10352478 10352488 HOXD13 JASPAR yes 112416361
chr19 10352478 10352493 FOXP1 JASPAR yes 70801488
chr19 10352478 10352493 MEF2C JASPAR yes 70801489
chr19 10352478 10352493 FOXP1 JASPAR yes 112416362
chr19 10352478 10352493 MEF2C JASPAR yes 112416363
chr19 10352480 10352492 FOXC2 JASPAR yes 70801490
chr19 10352480 10352492 MEF2A JASPAR yes 70801491
chr19 10352480 10352492 MEF2B JASPAR yes 70801492
chr19 10352480 10352492 MEF2D JASPAR yes 70801493
chr19 10352480 10352492 FOXC2 JASPAR yes 112416364
chr19 10352480 10352492 MEF2A JASPAR yes 112416365
chr19 10352480 10352492 MEF2B JASPAR yes 112416366
chr19 10352480 10352492 MEF2D JASPAR yes 112416367
chr19 10352481 10352491 MEF2A JASPAR yes 70801494
chr19 10352481 10352491 MEF2A JASPAR yes 112416368
chr19 10352492 10352497 GATA2 JASPAR yes 70801495
chr19 10352492 10352497 GATA2 JASPAR yes 112416369
chr19 10352509 10352515 TBP TRANSFAC yes 70801496
chr19 10352509 10352515 TBP TRANSFAC yes 112416370
chr19 10352512 10352527 MEF2C JASPAR yes 70801497
chr19 10352512 10352527 MEF2C JASPAR yes 112416371
chr19 10352513 10352528 MEF2A JASPAR yes 70801498
chr19 10352513 10352528 MEF2A JASPAR yes 112416372
chr19 10352514 10352526 MEF2B JASPAR yes 70801499
chr19 10352514 10352526 MEF2B JASPAR yes 112416373
chr19 10352515 10352524 POU5F1B JASPAR yes 70801500
chr19 10352515 10352524 POU5F1B JASPAR yes 112416374
chr19 10352515 10352525 MEF2A JASPAR yes 70801501
chr19 10352515 10352525 MEF2A JASPAR yes 112416375
chr19 10352524 10352538 POU1F1 JASPAR yes 70801502
chr19 10352524 10352538 POU1F1 JASPAR yes 112416376
chr19 10352525 10352537 POU3F1 JASPAR yes 70801503
chr19 10352525 10352537 POU3F2 JASPAR yes 70801504
chr19 10352525 10352537 POU3F1 JASPAR yes 112416377
chr19 10352525 10352537 POU3F2 JASPAR yes 112416378
chr19 10352525 10352538 POU3F3 JASPAR yes 70801505
chr19 10352525 10352538 POU3F3 JASPAR yes 112416379
chr19 10352526 10352538 POU2F1 JASPAR yes 70801506
chr19 10352526 10352538 POU2F1 JASPAR yes 112416380
chr19 10352527 10352536 POU3F4 JASPAR yes 70801507
chr19 10352527 10352536 POU5F1B JASPAR yes 70801508
chr19 10352527 10352536 POU3F4 JASPAR yes 112416381
chr19 10352527 10352536 POU5F1B JASPAR yes 112416382
chr19 10352528 10352546 SRF JASPAR yes 70801509
chr19 10352528 10352546 SRF JASPAR yes 112416383
chr19 10352571 10352581 BHLHE22 JASPAR yes 70801510
chr19 10352571 10352581 OLIG3 JASPAR yes 70801511
chr19 10352571 10352581 BHLHE22 JASPAR yes 112416384
chr19 10352571 10352581 OLIG3 JASPAR yes 112416385
chr19 10352577 10352582 TFAP2A TRANSFAC yes 70801512
chr19 10352577 10352582 TFAP2A TRANSFAC yes 112416386
chr19 10352577 10352583 MZF1 JASPAR yes 70801513
chr19 10352577 10352583 MZF1 JASPAR yes 112416387
chr19 10352592 10352602 SP1 JASPAR yes 70801514
chr19 10352592 10352602 SP1 JASPAR yes 112416388
chr19 10352636 10352650 PLAG1 JASPAR yes 70801515
chr19 10352636 10352650 PLAG1 JASPAR yes 112416389
chr19 10352642 10352660 RARA JASPAR yes 70801516
chr19 10352642 10352660 RARA JASPAR yes 112416390
chr19 10352643 10352651 TBX15 JASPAR yes 70801517
chr19 10352643 10352651 TBX15 JASPAR yes 112416391
chr19 10352643 10352654 E2F6 JASPAR yes 70801518
chr19 10352643 10352654 E2F6 JASPAR yes 112416392
chr19 10352644 10352649 SP1 TRANSFAC yes 70801519
chr19 10352644 10352649 SP1 TRANSFAC yes 112416393
chr19 10352694 10352705 NFKB1 JASPAR yes 70801520
chr19 10352694 10352705 NFKB1 JASPAR yes 112416394
chr19 10352706 10352721 MEF2A JASPAR yes 70801521
chr19 10352706 10352721 MEF2A JASPAR yes 112416395
chr19 10352707 10352722 MEF2C JASPAR yes 70801522
chr19 10352707 10352722 MEF2C JASPAR yes 112416396
chr19 10352708 10352720 MEF2A JASPAR yes 70801523
chr19 10352708 10352720 MEF2A JASPAR yes 112416397
chr19 10352709 10352719 MEF2A JASPAR yes 70801524
chr19 10352709 10352719 MEF2A JASPAR yes 112416398
chr19 10352710 10352714 YY1 TRANSFAC yes 70801525
chr19 10352710 10352714 YY1 TRANSFAC yes 112416399
chr19 10352725 10352731 TBP TRANSFAC yes 70801526
chr19 10352725 10352731 TBP TRANSFAC yes 112416400
chr19 10352730 10352744 ONECUT2 JASPAR yes 70801527
chr19 10352730 10352744 ONECUT3 JASPAR yes 70801528
chr19 10352730 10352744 ONECUT2 JASPAR yes 112416401
chr19 10352730 10352744 ONECUT3 JASPAR yes 112416402
chr19 10352734 10352750 SRF JASPAR yes 70801529
chr19 10352734 10352750 SRF JASPAR yes 112416403
SNP sites on vista28571[chr19:10352370-10352740]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 10352440 rs117591554 G A no 5435596
chr19 10352466 rs116783460 T A
MYC
5435597
chr19 10352508 rs114693670 T C no 5435598
chr19 10352580 rs75599367 G C
BHLHE22 MZF1 OLIG3 TFAP2A
5435599
chr19 10352726 rs557553667 T A
TBP
5435600
chr19 10352727 rs117783506 A T
TBP
5435601
Genes possibly regulated by vista28571[chr19:10352370-10352740]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 10244021 10341962 - DNMT1 ENSG00000130816.10 10341962 0.87 1.0 16997 89592
chr19 10334520 10341948 - S1PR2 ENSG00000267534.1 10341948 0.86 1.0 16998 89578
chr19 10362577 10370721 + MRPL4 ENSG00000105364.9 10362577 0.79 1.0 16999 90163
chr19 10381511 10397291 + ICAM1 ENSG00000090339.4 10381511 0.94 0.99 17000 71229
chr19 10397643 10399198 + ICAM4 ENSG00000105371.8 10397643 0.97 0.97 17001 55097
chr19 10400657 10407454 + ICAM5 ENSG00000105376.4 10400657 0.98 1.0 17002 52083
chr19 10415479 10420556 - ZGLP1 ENSG00000220201.3 10420556 0.82 0.99 17003 32184
chr19 10416103 10426685 - CTD-2369P2.10 ENSG00000167807.11 10426685 0.9 0.7 17005 26055
chr19 10416103 10426691 - FDX1L ENSG00000267673.2 10426691 0.62 0.7 17004 26049
chr19 10426147 10431354 - CTD-2369P2.12 ENSG00000267303.1 10431354 0.91 0.88 17006 21386
chr19 10426888 10444316 - RAVER1 ENSG00000161847.9 10444316 0.63 0.99 17007 8424
chr19 10444452 10450499 - ICAM3 ENSG00000076662.5 10450499 0.86 0.99 17008 2241
Expression level of Genes
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miRNAs possibly regulated by vista28571[chr19:10352370-10352740]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results