EnhancerDB
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  3. vista28655[chr19:12895349-12896178]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28655[chr19:12895349-12896178]
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Tissue distribution of vista28655
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Transcription factor that possibly regulate vista28655[chr19:12895349-12896178]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 12895183 12896060 POLR2A UCSC Txn Factor no Conserved 108386337
chr19 12895183 12896060 POLR2A UCSC Txn Factor no Conserved 108386338
chr19 12895278 12895851 GATA1 UCSC Txn Factor no Conserved 108386345
chr19 12895278 12895851 GATA1 UCSC Txn Factor no Conserved 108386346
chr19 12895311 12896196 MYC UCSC Txn Factor no Conserved 108386349
chr19 12895311 12896196 MYC UCSC Txn Factor no Conserved 108386350
chr19 12895336 12896006 GATA2 UCSC Txn Factor no Conserved 108386358
chr19 12895372 12895680 TAL1 UCSC Txn Factor no Conserved 108386368
chr19 12895372 12895682 BHLHE40 UCSC Txn Factor no Conserved 108386370
chr19 12895386 12895786 EP300 UCSC Txn Factor no Conserved 108386374
chr19 12895389 12895669 TEAD4 UCSC Txn Factor no Conserved 108386375
chr19 12895929 12896383 RUNX3 UCSC Txn Factor no Conserved 108386397
chr19 12895929 12896383 RUNX3 UCSC Txn Factor no Conserved 108386398
chr19 12895347 12895367 TBX19 JASPAR yes 70806117
chr19 12895347 12895367 TBX19 JASPAR yes 112493778
chr19 12895349 12895365 T JASPAR yes 70806118
chr19 12895349 12895365 T JASPAR yes 112493779
chr19 12895356 12895365 ZEB1 JASPAR yes 70806119
chr19 12895356 12895365 ZEB1 JASPAR yes 112493780
chr19 12895357 12895370 SMAD2 JASPAR yes 70806120
chr19 12895357 12895370 SMAD2 JASPAR yes 112493781
chr19 12895397 12895407 MAX JASPAR yes 70806121
chr19 12895397 12895407 MAX JASPAR yes 112493782
chr19 12895407 12895419 FOXI1 JASPAR yes 70806122
chr19 12895407 12895419 FOXI1 JASPAR yes 112493783
chr19 12895411 12895417 HiNF-A TRANSFAC yes 70806123
chr19 12895411 12895417 HiNF-A TRANSFAC yes 112493784
chr19 12895435 12895439 LFA1 TRANSFAC yes 70806124
chr19 12895435 12895439 LFA1 TRANSFAC yes 112493785
chr19 12895475 12895490 SCRT1 JASPAR yes 70806125
chr19 12895475 12895490 SCRT1 JASPAR yes 112493786
chr19 12895478 12895491 ZBTB18 JASPAR yes 70806126
chr19 12895478 12895491 ZBTB18 JASPAR yes 112493787
chr19 12895480 12895490 MAX JASPAR yes 70806127
chr19 12895480 12895490 MAX JASPAR yes 112493788
chr19 12895516 12895527 GCM1 JASPAR yes 70806128
chr19 12895516 12895527 GCM1 JASPAR yes 112493789
chr19 12895524 12895538 PLAG1 JASPAR yes 70806129
chr19 12895524 12895538 PLAG1 JASPAR yes 112493790
chr19 12895547 12895567 TP63 JASPAR yes 70806130
chr19 12895547 12895567 TP63 JASPAR yes 112493791
chr19 12895566 12895570 NFE TRANSFAC yes 70806131
chr19 12895566 12895570 NFE TRANSFAC yes 112493792
chr19 12895591 12895611 RREB1 JASPAR yes 70806132
chr19 12895591 12895611 RREB1 JASPAR yes 112493793
chr19 12895607 12895627 RREB1 JASPAR yes 70806133
chr19 12895607 12895627 RREB1 JASPAR yes 112493794
chr19 12895627 12895633 GATA3 JASPAR yes 70806134
chr19 12895627 12895633 GATA3 JASPAR yes 112493795
chr19 12895649 12895668 REST JASPAR yes 70806135
chr19 12895649 12895668 REST JASPAR yes 112493796
chr19 12895683 12895703 ESR1 JASPAR yes 70806136
chr19 12895683 12895703 ESR1 JASPAR yes 112493797
chr19 12895692 12895712 ESR1 JASPAR yes 70806137
chr19 12895692 12895712 ESR1 JASPAR yes 112493798
chr19 12895791 12895807 T JASPAR yes 70806138
chr19 12895791 12895807 T JASPAR yes 112493799
chr19 12895817 12895822 NFY TRANSFAC yes 70806139
chr19 12895817 12895822 NFY TRANSFAC yes 112493800
chr19 12895825 12895845 ESR1 JASPAR yes 70806140
chr19 12895825 12895845 ESR1 JASPAR yes 112493801
chr19 12895828 12895837 THAP1 JASPAR yes 70806141
chr19 12895828 12895837 THAP1 JASPAR yes 112493802
chr19 12895829 12895847 ESR2 JASPAR yes 70806142
chr19 12895829 12895847 ESR2 JASPAR yes 112493803
chr19 12895830 12895845 ESR2 JASPAR yes 70806143
chr19 12895830 12895845 ESR2 JASPAR yes 112493804
chr19 12895831 12895835 LFA1 TRANSFAC yes 70806144
chr19 12895831 12895835 LFA1 TRANSFAC yes 112493805
chr19 12895834 12895847 SMAD2 JASPAR yes 70806145
chr19 12895834 12895847 SMAD2 JASPAR yes 112493806
chr19 12895843 12895863 TP53 JASPAR yes 70806146
chr19 12895843 12895863 TP53 JASPAR yes 112493807
chr19 12895872 12895880 MGA JASPAR yes 70806147
chr19 12895872 12895880 TBX15 JASPAR yes 70806148
chr19 12895872 12895880 TBX1 JASPAR yes 70806149
chr19 12895872 12895880 TBX4 JASPAR yes 70806150
chr19 12895872 12895880 TBX5 JASPAR yes 70806151
chr19 12895872 12895880 MGA JASPAR yes 112493808
chr19 12895872 12895880 TBX15 JASPAR yes 112493809
chr19 12895872 12895880 TBX1 JASPAR yes 112493810
chr19 12895872 12895880 TBX4 JASPAR yes 112493811
chr19 12895872 12895880 TBX5 JASPAR yes 112493812
chr19 12895889 12895904 AR JASPAR yes 70806152
chr19 12895889 12895904 AR JASPAR yes 112493813
chr19 12895913 12895927 FOXF2 JASPAR yes 70806153
chr19 12895913 12895927 FOXF2 JASPAR yes 112493814
chr19 12895915 12895922 TBP TRANSFAC yes 70806154
chr19 12895915 12895922 TFIID TRANSFAC yes 70806155
chr19 12895915 12895922 TBP TRANSFAC yes 112493815
chr19 12895915 12895922 TFIID TRANSFAC yes 112493816
chr19 12895918 12895926 FOXG1 JASPAR yes 70806156
chr19 12895918 12895926 FOXG1 JASPAR yes 112493817
chr19 12895920 12895926 HiNF-A TRANSFAC yes 70806157
chr19 12895920 12895926 HiNF-A TRANSFAC yes 112493818
chr19 12895928 12895943 AR JASPAR yes 70806158
chr19 12895928 12895943 AR JASPAR yes 112493819
chr19 12895948 12895958 MSC JASPAR yes 70806159
chr19 12895948 12895958 MSC JASPAR yes 112493820
chr19 12895948 12895960 GRHL1 JASPAR yes 70806160
chr19 12895948 12895960 GRHL1 JASPAR yes 112493821
chr19 12895950 12895965 FOXA1 JASPAR yes 70806161
chr19 12895950 12895965 FOXA1 JASPAR yes 112493822
chr19 12895951 12895957 PTF TRANSFAC yes 70806162
chr19 12895951 12895957 PTF TRANSFAC yes 112493823
chr19 12895954 12895965 FOXA1 JASPAR yes 70806163
chr19 12895954 12895965 FOXA1 JASPAR yes 112493824
chr19 12895996 12895999 MYB TRANSFAC yes 70806164
chr19 12895996 12895999 MYB TRANSFAC yes 112493825
chr19 12896014 12896029 RUNX2 JASPAR yes 70806165
chr19 12896014 12896029 RUNX2 JASPAR yes 112493826
chr19 12896027 12896037 MAX JASPAR yes 70806166
chr19 12896027 12896037 MAX JASPAR yes 112493827
chr19 12896032 12896042 NFATC3 JASPAR yes 70806167
chr19 12896032 12896042 NFATC3 JASPAR yes 112493828
chr19 12896034 12896042 FOXO3 JASPAR yes 70806168
chr19 12896034 12896042 FOXO3 JASPAR yes 112493829
chr19 12896040 12896055 RUNX2 JASPAR yes 70806169
chr19 12896040 12896055 RUNX2 JASPAR yes 112493830
chr19 12896044 12896064 RREB1 JASPAR yes 70806170
chr19 12896044 12896064 RREB1 JASPAR yes 112493831
chr19 12896046 12896066 RREB1 JASPAR yes 70806171
chr19 12896046 12896066 RREB1 JASPAR yes 112493832
chr19 12896049 12896063 GLIS3 JASPAR yes 70806172
chr19 12896049 12896063 GLIS3 JASPAR yes 112493833
chr19 12896059 12896079 RREB1 JASPAR yes 70806173
chr19 12896059 12896079 RREB1 JASPAR yes 112493834
chr19 12896062 12896074 GLI2 JASPAR yes 70806174
chr19 12896062 12896074 GLI2 JASPAR yes 112493835
chr19 12896062 12896077 RUNX2 JASPAR yes 70806175
chr19 12896062 12896077 RUNX2 JASPAR yes 112493836
chr19 12896063 12896073 RUNX3 JASPAR yes 70806176
chr19 12896063 12896073 RUNX3 JASPAR yes 112493837
chr19 12896063 12896083 RREB1 JASPAR yes 70806177
chr19 12896063 12896083 RREB1 JASPAR yes 112493838
chr19 12896065 12896085 RREB1 JASPAR yes 70806178
chr19 12896065 12896085 RREB1 JASPAR yes 112493839
chr19 12896066 12896086 RREB1 JASPAR yes 70806179
chr19 12896066 12896086 RREB1 JASPAR yes 112493840
chr19 12896067 12896087 RREB1 JASPAR yes 70806180
chr19 12896067 12896087 RREB1 JASPAR yes 112493841
chr19 12896069 12896089 RREB1 JASPAR yes 70806181
chr19 12896069 12896089 RREB1 JASPAR yes 112493842
chr19 12896072 12896092 RREB1 JASPAR yes 70806182
chr19 12896072 12896092 RREB1 JASPAR yes 112493843
chr19 12896074 12896094 RREB1 JASPAR yes 70806183
chr19 12896074 12896094 RREB1 JASPAR yes 112493844
chr19 12896076 12896096 RREB1 JASPAR yes 70806184
chr19 12896076 12896096 RREB1 JASPAR yes 112493845
chr19 12896081 12896087 HiNF-A TRANSFAC yes 70806185
chr19 12896081 12896087 HiNF-A TRANSFAC yes 112493846
chr19 12896083 12896103 RREB1 JASPAR yes 70806186
chr19 12896083 12896103 RREB1 JASPAR yes 112493847
chr19 12896090 12896105 RUNX2 JASPAR yes 70806187
chr19 12896090 12896105 RUNX2 JASPAR yes 112493848
chr19 12896105 12896118 EOMES JASPAR yes 70806188
chr19 12896105 12896118 EOMES JASPAR yes 112493849
chr19 12896107 12896117 TBR1 JASPAR yes 70806189
chr19 12896107 12896117 TBR1 JASPAR yes 112493850
chr19 12896110 12896130 RREB1 JASPAR yes 70806190
chr19 12896110 12896130 RREB1 JASPAR yes 112493851
chr19 12896112 12896132 RREB1 JASPAR yes 70806191
chr19 12896112 12896132 RREB1 JASPAR yes 112493852
chr19 12896127 12896139 TAL1 JASPAR yes 70806192
chr19 12896127 12896139 TAL1 JASPAR yes 112493853
chr19 12896156 12896171 RUNX2 JASPAR yes 70806193
chr19 12896156 12896171 RUNX2 JASPAR yes 112493854
chr19 12896171 12896184 EOMES JASPAR yes 70806194
chr19 12896171 12896184 EOMES JASPAR yes 112493855
chr19 12896173 12896183 TBR1 JASPAR yes 70806195
chr19 12896173 12896183 TBR1 JASPAR yes 112493856
SNP sites on vista28655[chr19:12895349-12896178]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 12895553 rs8102357 G A
BHLHE40 EP300 GATA1 GATA2 MYC POLR2A TAL1 TEAD4 TP63
5446809
chr19 12895584 rs146905613 G A,C
BHLHE40 EP300 GATA1 GATA2 MYC POLR2A TAL1 TEAD4
5446810
chr19 12895594 rs190030731 G A
BHLHE40 EP300 GATA1 GATA2 MYC POLR2A RREB1 TAL1 TEAD4
5446811
chr19 12895600 rs62108404 C G
BHLHE40 EP300 GATA1 GATA2 MYC POLR2A RREB1 TAL1 TEAD4
5446812
chr19 12895892 rs116074241 G T
AR GATA2 MYC POLR2A
5446813
chr19 12895954 rs78884944 C T
FOXA1 GATA2 GRHL1 MSC MYC POLR2A PTF RUNX3
5446814
chr19 12896143 rs139156291 CACAT C
MYC RUNX3
5446815
Genes possibly regulated by vista28655[chr19:12895349-12896178]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 12798867 12807457 - FBXW9 ENSG00000132004.8 12807457 0.7 1.0 17091 12108
chr19 12810008 12834825 - TNPO2 ENSG00000105576.11 12834825 0.68 1.0 17092 39476
chr19 12841454 12845589 - C19orf43 ENSG00000123144.6 12845589 0.53 0.99 17093 50240
chr19 12847953 12859137 + ASNA1 ENSG00000198356.7 12847953 0.61 0.99 17094 52604
chr19 12862516 12869272 + BEST2 ENSG00000039987.2 12862516 1.0 0.99 17095 67167
chr19 12873817 12983554 - HOOK2 ENSG00000095066.7 12983554 0.8 1.0 17096 12624
chr19 12902310 12904124 + JUNB ENSG00000171223.4 12902310 0.87 1.0 17097 93868
chr19 12907634 12912694 - PRDX2 ENSG00000167815.7 12912694 0.59 1.0 17098 83484
chr19 12917394 12924452 + RNASEH2A ENSG00000104889.4 12917394 0.86 0.99 17099 78784
chr19 12936292 12946242 - RTBDN ENSG00000132026.9 12946242 0.99 1.0 17100 49936
chr19 12944765 12985765 + MAST1 ENSG00000105613.5 12944765 0.78 1.0 17101 51413
chr19 12986025 12992282 - DNASE2 ENSG00000105612.4 12992282 0.64 1.0 17102 3896
Expression level of Genes
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miRNAs possibly regulated by vista28655[chr19:12895349-12896178]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results