EnhancerDB
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  3. vista28656[chr19:12896372-12896781]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28656[chr19:12896372-12896781]
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Tissue distribution of vista28656
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Transcription factor that possibly regulate vista28656[chr19:12896372-12896781]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 12895929 12896383 RUNX3 UCSC Txn Factor no Conserved 108386397
chr19 12895929 12896383 RUNX3 UCSC Txn Factor no Conserved 108386398
chr19 12896540 12896768 SPI1 UCSC Txn Factor no Conserved 108386428
chr19 12896365 12896375 MAX JASPAR yes 70806196
chr19 12896365 12896375 MAX JASPAR yes 112493873
chr19 12896410 12896429 REST JASPAR yes 70806197
chr19 12896410 12896429 REST JASPAR yes 112493874
chr19 12896422 12896436 GATA2 JASPAR yes 70806198
chr19 12896422 12896436 GATA2 JASPAR yes 112493875
chr19 12896424 12896432 GATA3 JASPAR yes 70806199
chr19 12896424 12896432 GATA3 JASPAR yes 112493876
chr19 12896438 12896453 HNF4A JASPAR yes 70806200
chr19 12896438 12896453 HNF4A JASPAR yes 112493877
chr19 12896439 12896454 HNF4G JASPAR yes 70806201
chr19 12896439 12896454 HNF4G JASPAR yes 112493878
chr19 12896456 12896465 HIC2 JASPAR yes 70806202
chr19 12896456 12896465 HIC2 JASPAR yes 112493879
chr19 12896459 12896463 LFA1 TRANSFAC yes 70806203
chr19 12896459 12896463 LFA1 TRANSFAC yes 112493880
chr19 12896463 12896482 REST JASPAR yes 70806204
chr19 12896463 12896482 REST JASPAR yes 112493881
chr19 12896468 12896483 NR2C2 JASPAR yes 70806205
chr19 12896468 12896483 NR2C2 JASPAR yes 112493882
chr19 12896471 12896475 LFA1 TRANSFAC yes 70806206
chr19 12896471 12896475 LFA1 TRANSFAC yes 112493883
chr19 12896487 12896491 NFE TRANSFAC yes 70806207
chr19 12896487 12896491 NFE TRANSFAC yes 112493884
chr19 12896487 12896500 SMAD2 JASPAR yes 70806208
chr19 12896487 12896500 SMAD2 JASPAR yes 112493885
chr19 12896562 12896574 INSM1 JASPAR yes 70806209
chr19 12896562 12896574 INSM1 JASPAR yes 112493886
chr19 12896562 12896577 HNF4G JASPAR yes 70806210
chr19 12896562 12896577 HNF4G JASPAR yes 112493887
chr19 12896569 12896583 NR2F1 JASPAR yes 70806211
chr19 12896569 12896583 NR2F1 JASPAR yes 112493888
chr19 12896570 12896591 REST JASPAR yes 70806212
chr19 12896570 12896591 REST JASPAR yes 112493889
chr19 12896571 12896590 REST JASPAR yes 70806213
chr19 12896571 12896590 REST JASPAR yes 112493890
chr19 12896574 12896583 NFIX JASPAR yes 70806214
chr19 12896574 12896583 NFIX JASPAR yes 112493891
chr19 12896576 12896582 NFIC JASPAR yes 70806215
chr19 12896576 12896582 NFIC JASPAR yes 112493892
chr19 12896592 12896596 LFA1 TRANSFAC yes 70806216
chr19 12896592 12896596 LFA1 TRANSFAC yes 112493893
chr19 12896611 12896615 NFE TRANSFAC yes 70806217
chr19 12896611 12896615 NFE TRANSFAC yes 112493894
chr19 12896617 12896623 NFE2 TRANSFAC yes 70806218
chr19 12896617 12896623 NFE2 TRANSFAC yes 112493895
chr19 12896636 12896647 ELK4 JASPAR yes 70806219
chr19 12896636 12896647 FLI1 JASPAR yes 70806220
chr19 12896636 12896647 ELK4 JASPAR yes 112493896
chr19 12896636 12896647 FLI1 JASPAR yes 112493897
chr19 12896637 12896647 ETV6 JASPAR yes 70806221
chr19 12896637 12896647 GABPA JASPAR yes 70806222
chr19 12896637 12896647 ETV6 JASPAR yes 112493898
chr19 12896637 12896647 GABPA JASPAR yes 112493899
chr19 12896637 12896650 ELF1 JASPAR yes 70806223
chr19 12896637 12896650 ELF1 JASPAR yes 112493900
chr19 12896638 12896645 SPI1 JASPAR yes 70806224
chr19 12896638 12896645 SPI1 JASPAR yes 112493901
chr19 12896638 12896646 EHF JASPAR yes 70806225
chr19 12896638 12896646 EHF JASPAR yes 112493902
chr19 12896640 12896647 SPIB JASPAR yes 70806226
chr19 12896640 12896647 SPIB JASPAR yes 112493903
chr19 12896656 12896666 ZNF740 JASPAR yes 70806227
chr19 12896656 12896666 ZNF740 JASPAR yes 112493904
chr19 12896656 12896677 ZNF263 JASPAR yes 70806228
chr19 12896656 12896677 ZNF263 JASPAR yes 112493905
chr19 12896660 12896681 ZNF263 JASPAR yes 70806229
chr19 12896660 12896681 ZNF263 JASPAR yes 112493906
chr19 12896664 12896675 E2F6 JASPAR yes 70806230
chr19 12896664 12896675 E2F6 JASPAR yes 112493907
chr19 12896664 12896685 ZNF263 JASPAR yes 70806231
chr19 12896664 12896685 ZNF263 JASPAR yes 112493908
chr19 12896668 12896679 E2F6 JASPAR yes 70806232
chr19 12896668 12896679 E2F6 JASPAR yes 112493909
chr19 12896676 12896682 TCF4 TRANSFAC yes 70806233
chr19 12896676 12896682 TCF4 TRANSFAC yes 112493910
chr19 12896688 12896698 ETV6 JASPAR yes 70806234
chr19 12896688 12896698 ETV6 JASPAR yes 112493911
chr19 12896691 12896702 EBF1 JASPAR yes 70806235
chr19 12896691 12896702 EBF1 JASPAR yes 112493912
chr19 12896704 12896722 MAFF JASPAR yes 70806236
chr19 12896704 12896722 MAFF JASPAR yes 112493913
chr19 12896733 12896738 SP1 TRANSFAC yes 70806237
chr19 12896733 12896738 SP1 TRANSFAC yes 112493914
chr19 12896737 12896742 SP1 TRANSFAC yes 70806238
chr19 12896737 12896742 SP1 TRANSFAC yes 112493915
chr19 12896745 12896755 MEF2A JASPAR yes 70806239
chr19 12896745 12896755 MEF2A JASPAR yes 112493916
chr19 12896746 12896750 TEAD2 TRANSFAC yes 70806240
chr19 12896746 12896750 TEAD2 TRANSFAC yes 112493917
chr19 12896746 12896751 TBP TRANSFAC yes 70806241
chr19 12896746 12896751 TBP TRANSFAC yes 112493918
chr19 12896746 12896760 RORA JASPAR yes 70806242
chr19 12896746 12896760 RORA JASPAR yes 112493919
chr19 12896749 12896759 RORA JASPAR yes 70806243
chr19 12896749 12896759 RORA JASPAR yes 112493920
chr19 12896750 12896763 NR2F1 JASPAR yes 70806244
chr19 12896750 12896763 NR2F1 JASPAR yes 112493921
chr19 12896752 12896760 NR4A2 JASPAR yes 70806245
chr19 12896752 12896760 NR4A2 JASPAR yes 112493922
chr19 12896753 12896768 ESR2 JASPAR yes 70806246
chr19 12896753 12896768 ESR2 JASPAR yes 112493923
chr19 12896754 12896758 ESR1 TRANSFAC yes 70806247
chr19 12896754 12896758 ESR1 TRANSFAC yes 112493924
chr19 12896774 12896783 HIC2 JASPAR yes 70806248
chr19 12896774 12896783 HIC2 JASPAR yes 112493925
chr19 12896781 12896785 H4TF2 TRANSFAC yes 70806249
chr19 12896781 12896785 H4TF2 TRANSFAC yes 112493926
SNP sites on vista28656[chr19:12896372-12896781]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 12896377 rs542700861 C G
RUNX3
5446819
chr19 12896474 rs116378529 G A
LFA1 NR2C2 REST
5446820
chr19 12896560 rs191242673 G A
SPI1
5446821
chr19 12896644 rs183150816 C T
EHF ELF1 ELK4 ETV6 FLI1 GABPA SPI1 SPIB
5446822
Genes possibly regulated by vista28656[chr19:12896372-12896781]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 12798867 12807457 - FBXW9 ENSG00000132004.8 12807457 0.7 1.0 17091 11085
chr19 12810008 12834825 - TNPO2 ENSG00000105576.11 12834825 0.68 1.0 17092 38453
chr19 12841454 12845589 - C19orf43 ENSG00000123144.6 12845589 0.53 0.99 17093 49217
chr19 12847953 12859137 + ASNA1 ENSG00000198356.7 12847953 0.61 0.99 17094 51581
chr19 12862516 12869272 + BEST2 ENSG00000039987.2 12862516 1.0 0.99 17095 66144
chr19 12873817 12983554 - HOOK2 ENSG00000095066.7 12983554 0.8 1.0 17096 13227
chr19 12902310 12904124 + JUNB ENSG00000171223.4 12902310 0.87 1.0 17097 94471
chr19 12907634 12912694 - PRDX2 ENSG00000167815.7 12912694 0.59 1.0 17098 84087
chr19 12917394 12924452 + RNASEH2A ENSG00000104889.4 12917394 0.86 0.99 17099 79387
chr19 12936292 12946242 - RTBDN ENSG00000132026.9 12946242 0.99 1.0 17100 50539
chr19 12944765 12985765 + MAST1 ENSG00000105613.5 12944765 0.78 1.0 17101 52016
chr19 12986025 12992282 - DNASE2 ENSG00000105612.4 12992282 0.64 1.0 17102 4499
Expression level of Genes
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miRNAs possibly regulated by vista28656[chr19:12896372-12896781]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results