EnhancerDB
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  3. rs116378529[chr19:12896474]
Enhancers that have rs116378529[chr19:12896474]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 12880762 12907555 enh5013
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Astrocyte Bone (Osteoblast) Lung Blood (OCI-LY7) Placenta Blood (Karpas-422) Muscle (Myoblast) Uterus Blood (T-cell)
chr19 12896372 12896781 vista28656
VISTA
Transcript factors that have rs116378529[chr19:12896474]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 12895913 12897618 ZNF143 GTRD no Epithelial (MCF-7) 108386394
chr19 12895913 12897618 ZNF143 GTRD no Epithelial (MCF-7) 108386395
chr19 12895913 12897618 ZNF143 GTRD no Epithelial (MCF-7) 108386396
chr19 12896109 12898236 TCF7L2 GTRD no Colon (HCT116) 108386407
chr19 12896109 12898236 TCF7L2 GTRD no Colon (HCT116) 108386408
chr19 12896109 12898236 TCF7L2 GTRD no Colon (HCT116) 108386409
chr19 12896116 12896844 ZNF274 GTRD no Blood (GM12878) 108386410
chr19 12896116 12896844 ZNF274 GTRD no Blood (GM12878) 108386411
chr19 12896132 12896568 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108386412
chr19 12896132 12896568 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108386413
chr19 12896196 12897007 ZNF274 GTRD no Blood (GM12878) 108386414
chr19 12896196 12897007 ZNF274 GTRD no Blood (GM12878) 108386415
chr19 12896229 12896815 ZNF274 GTRD no Blood (GM12878) 108386416
chr19 12896235 12896974 ZNF274 GTRD no Blood (GM12878) 108386417
chr19 12896235 12896974 ZNF274 GTRD no Blood (GM12878) 108386418
chr19 12896276 12896875 ZNF274 GTRD no Blood (GM12878) 108386419
chr19 12896276 12896875 ZNF274 GTRD no Blood (GM12878) 108386420
chr19 12896308 12896875 ZNF274 GTRD no Blood (GM12878) 108386421
chr19 12896308 12896875 ZNF274 GTRD no Blood (GM12878) 108386422
chr19 12896362 12897916 ZNF274 GTRD no Blood (GM12878) 108386423
chr19 12896362 12897916 ZNF274 GTRD no Blood (GM12878) 108386424
chr19 12896384 12896768 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108386425
chr19 12896395 12896883 ZNF274 GTRD no Blood (GM12878) 108386426
chr19 12896395 12896883 ZNF274 GTRD no Blood (GM12878) 108386427
chr19 12896463 12896482 REST JASPAR yes 70806204
chr19 12896463 12896482 REST JASPAR yes 112493881
chr19 12896468 12896483 NR2C2 JASPAR yes 70806205
chr19 12896468 12896483 NR2C2 JASPAR yes 112493882
chr19 12896471 12896475 LFA1 TRANSFAC yes 70806206
chr19 12896471 12896475 LFA1 TRANSFAC yes 112493883
Genes associated with rs116378529[chr19:12896474], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More