EnhancerDB
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  3. vista28677[chr19:13140737-13141121]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28677[chr19:13140737-13141121]
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Tissue distribution of vista28677
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Transcription factor that possibly regulate vista28677[chr19:13140737-13141121]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 13140722 13141374 CTCF UCSC Txn Factor no Conserved 108387488
chr19 13140804 13141084 RAD21 UCSC Txn Factor no Conserved 108387491
chr19 13140737 13140743 NFIC JASPAR yes 70807766
chr19 13140737 13140743 NFIC JASPAR yes 112502512
chr19 13140760 13140771 NFKB1 JASPAR yes 70807767
chr19 13140760 13140771 NFKB1 JASPAR yes 112502513
chr19 13140766 13140772 MZF1 JASPAR yes 70807768
chr19 13140766 13140772 MZF1 JASPAR yes 112502514
chr19 13140775 13140781 TCF4 TRANSFAC yes 70807769
chr19 13140775 13140781 TCF4 TRANSFAC yes 112502515
chr19 13140784 13140793 HIC2 JASPAR yes 70807770
chr19 13140784 13140793 HIC2 JASPAR yes 112502516
chr19 13140798 13140809 FOXA1 JASPAR yes 70807771
chr19 13140798 13140809 FOXA1 JASPAR yes 112502517
chr19 13140806 13140816 SREBF1 JASPAR yes 70807772
chr19 13140806 13140816 SREBF2 JASPAR yes 70807773
chr19 13140806 13140816 SREBF1 JASPAR yes 112502518
chr19 13140806 13140816 SREBF2 JASPAR yes 112502519
chr19 13140810 13140818 FOXC1 JASPAR yes 70807774
chr19 13140810 13140818 FOXC1 JASPAR yes 112502520
chr19 13140821 13140827 MAZ TRANSFAC yes 70807775
chr19 13140821 13140827 MAZ TRANSFAC yes 112502521
chr19 13140826 13140830 H4TF2 TRANSFAC yes 70807776
chr19 13140826 13140830 H4TF2 TRANSFAC yes 112502522
chr19 13140856 13140860 H4TF2 TRANSFAC yes 70807777
chr19 13140856 13140860 H4TF2 TRANSFAC yes 112502523
chr19 13140859 13140869 ZNF740 JASPAR yes 70807778
chr19 13140859 13140869 ZNF740 JASPAR yes 112502524
chr19 13140864 13140878 PLAG1 JASPAR yes 70807779
chr19 13140864 13140878 PLAG1 JASPAR yes 112502525
chr19 13140884 13140905 ZNF263 JASPAR yes 70807780
chr19 13140884 13140905 ZNF263 JASPAR yes 112502526
chr19 13140915 13140921 HiNF-A TRANSFAC yes 70807781
chr19 13140915 13140921 HiNF-A TRANSFAC yes 112502527
chr19 13140944 13140963 CTCF JASPAR yes 70807782
chr19 13140944 13140963 CTCF JASPAR yes 112502528
chr19 13140946 13140958 TAL1 JASPAR yes 70807783
chr19 13140946 13140958 TAL1 JASPAR yes 112502529
chr19 13140948 13140954 YY1 JASPAR yes 70807784
chr19 13140948 13140954 YY1 JASPAR yes 112502530
chr19 13140948 13140958 NEUROG2 JASPAR yes 70807785
chr19 13140948 13140958 NEUROG2 JASPAR yes 112502531
chr19 13140952 13140967 RFX5 JASPAR yes 70807786
chr19 13140952 13140967 RFX5 JASPAR yes 112502532
chr19 13140968 13140974 SOX10 JASPAR yes 70807787
chr19 13140968 13140974 SOX10 JASPAR yes 112502533
chr19 13140989 13141003 PAX6 JASPAR yes 70807788
chr19 13140989 13141003 PAX6 JASPAR yes 112502534
chr19 13140995 13141010 MEF2C JASPAR yes 70807789
chr19 13140995 13141010 MEF2C JASPAR yes 112502535
chr19 13140996 13141011 MEF2A JASPAR yes 70807790
chr19 13140996 13141011 MEF2A JASPAR yes 112502536
chr19 13140997 13141009 MEF2A JASPAR yes 70807791
chr19 13140997 13141009 MEF2B JASPAR yes 70807792
chr19 13140997 13141009 MEF2D JASPAR yes 70807793
chr19 13140997 13141009 MEF2A JASPAR yes 112502537
chr19 13140997 13141009 MEF2B JASPAR yes 112502538
chr19 13140997 13141009 MEF2D JASPAR yes 112502539
chr19 13140998 13141008 MEF2A JASPAR yes 70807794
chr19 13140998 13141008 MEF2A JASPAR yes 112502540
chr19 13141029 13141032 MYB TRANSFAC yes 70807795
chr19 13141029 13141032 MYB TRANSFAC yes 112502541
chr19 13141033 13141037 H1TF2 TRANSFAC yes 70807796
chr19 13141033 13141037 NFE TRANSFAC yes 70807797
chr19 13141033 13141037 SRF TRANSFAC yes 70807798
chr19 13141033 13141037 H1TF2 TRANSFAC yes 112502542
chr19 13141033 13141037 NFE TRANSFAC yes 112502543
chr19 13141033 13141037 SRF TRANSFAC yes 112502544
chr19 13141042 13141046 H4TF2 TRANSFAC yes 70807799
chr19 13141042 13141046 H4TF2 TRANSFAC yes 112502545
chr19 13141052 13141067 HSF1 JASPAR yes 70807800
chr19 13141052 13141067 HSF1 JASPAR yes 112502546
chr19 13141053 13141066 HSF1 JASPAR yes 70807801
chr19 13141053 13141066 HSF2 JASPAR yes 70807802
chr19 13141053 13141066 HSF4 JASPAR yes 70807803
chr19 13141053 13141066 HSF1 JASPAR yes 112502547
chr19 13141053 13141066 HSF2 JASPAR yes 112502548
chr19 13141053 13141066 HSF4 JASPAR yes 112502549
chr19 13141067 13141075 TBX15 JASPAR yes 70807804
chr19 13141067 13141075 TBX1 JASPAR yes 70807805
chr19 13141067 13141075 TBX4 JASPAR yes 70807806
chr19 13141067 13141075 TBX5 JASPAR yes 70807807
chr19 13141067 13141075 TBX15 JASPAR yes 112502550
chr19 13141067 13141075 TBX1 JASPAR yes 112502551
chr19 13141067 13141075 TBX4 JASPAR yes 112502552
chr19 13141067 13141075 TBX5 JASPAR yes 112502553
chr19 13141075 13141079 NFE TRANSFAC yes 70807808
chr19 13141075 13141079 NFE TRANSFAC yes 112502554
chr19 13141075 13141092 RARA JASPAR yes 70807809
chr19 13141075 13141092 RARA JASPAR yes 112502555
chr19 13141078 13141092 RXRB JASPAR yes 70807810
chr19 13141078 13141092 RXRG JASPAR yes 70807811
chr19 13141078 13141092 RXRB JASPAR yes 112502556
chr19 13141078 13141092 RXRG JASPAR yes 112502557
chr19 13141081 13141087 TCF1 TRANSFAC yes 70807812
chr19 13141081 13141087 TCF1 TRANSFAC yes 112502558
chr19 13141083 13141094 ESRRA JASPAR yes 70807813
chr19 13141083 13141094 ESRRA JASPAR yes 112502559
chr19 13141083 13141096 NR2F1 JASPAR yes 70807814
chr19 13141083 13141096 NR2F1 JASPAR yes 112502560
chr19 13141085 13141093 NR4A2 JASPAR yes 70807815
chr19 13141085 13141093 NR4A2 JASPAR yes 112502561
chr19 13141087 13141091 ESR1 TRANSFAC yes 70807816
chr19 13141087 13141091 ESR1 TRANSFAC yes 112502562
chr19 13141097 13141108 HOXC11 JASPAR yes 70807817
chr19 13141097 13141108 HOXC12 JASPAR yes 70807818
chr19 13141097 13141108 HOXC13 JASPAR yes 70807819
chr19 13141097 13141108 HOXC11 JASPAR yes 112502563
chr19 13141097 13141108 HOXC12 JASPAR yes 112502564
chr19 13141097 13141108 HOXC13 JASPAR yes 112502565
chr19 13141098 13141108 HOXD11 JASPAR yes 70807820
chr19 13141098 13141108 HOXD11 JASPAR yes 112502566
SNP sites on vista28677[chr19:13140737-13141121]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 13140796 rs187331511 G A
CTCF
5448213
chr19 13140846 rs112181928 C T
CTCF RAD21
5448214
chr19 13140847 rs553724823 G A,T
CTCF RAD21
5448215
chr19 13140996 rs76071768 C T
CTCF MEF2A MEF2C PAX6 RAD21
5448216
Genes possibly regulated by vista28677[chr19:13140737-13141121]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 13033293 13044851 - FARSA ENSG00000179115.6 13044851 0.79 1.0 17106 4114
chr19 13049392 13055303 + CALR ENSG00000179218.9 13049392 0.69 0.99 17107 8655
chr19 13056669 13064456 + RAD23A ENSG00000179262.5 13056669 0.55 1.0 17108 15932
chr19 13064972 13068050 - GADD45GIP1 ENSG00000179271.1 13068050 0.7 0.99 17109 27313
chr19 13075973 13085567 + DAND5 ENSG00000179284.4 13075973 0.96 0.84 17110 35236
chr19 13106422 13209610 + NFIX ENSG00000008441.12 13106422 0.8 0.99 17111 65685
chr19 13209847 13213975 - LYL1 ENSG00000104903.4 13213975 0.92 0.93 17112 27146
chr19 13215716 13228381 - TRMT1 ENSG00000104907.8 13228381 0.6 1.0 17113 12740
chr19 13228917 13251955 + NACC1 ENSG00000160877.5 13228917 0.67 1.0 17114 12204
Expression level of Genes
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miRNAs possibly regulated by vista28677[chr19:13140737-13141121]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results