EnhancerDB
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  3. vista28687[chr19:13180372-13180812]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28687[chr19:13180372-13180812]
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Tissue distribution of vista28687
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Transcription factor that possibly regulate vista28687[chr19:13180372-13180812]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 13180292 13180999 GATA1 UCSC Txn Factor no Conserved 108388654
chr19 13180332 13181094 POLR2A UCSC Txn Factor no Conserved 108388656
chr19 13180386 13180751 CCNT2 UCSC Txn Factor no Conserved 108388659
chr19 13180435 13181088 GATA2 UCSC Txn Factor no Conserved 108388664
chr19 13180436 13180852 MYC UCSC Txn Factor no Conserved 108388666
chr19 13180437 13180793 RCOR1 UCSC Txn Factor no Conserved 108388667
chr19 13180441 13180759 TAL1 UCSC Txn Factor no Conserved 108388669
chr19 13180444 13180774 TEAD4 UCSC Txn Factor no Conserved 108388671
chr19 13180449 13180751 PML UCSC Txn Factor no Conserved 108388675
chr19 13180451 13180767 EP300 UCSC Txn Factor no Conserved 108388677
chr19 13180458 13180843 MAX UCSC Txn Factor no Conserved 108388679
chr19 13180489 13180696 NR2F2 UCSC Txn Factor no Conserved 108388689
chr19 13180528 13180680 STAT5A UCSC Txn Factor no Conserved 108388698
chr19 13180375 13180393 ESR1 JASPAR yes 70808273
chr19 13180375 13180393 ESR1 JASPAR yes 112507736
chr19 13180376 13180396 ESR1 JASPAR yes 70808274
chr19 13180376 13180396 ESR1 JASPAR yes 112507737
chr19 13180377 13180381 LFA1 TRANSFAC yes 70808275
chr19 13180377 13180381 LFA1 TRANSFAC yes 112507738
chr19 13180403 13180424 ZNF263 JASPAR yes 70808276
chr19 13180403 13180424 ZNF263 JASPAR yes 112507739
chr19 13180406 13180412 PEA3 TRANSFAC yes 70808277
chr19 13180406 13180412 PEA3 TRANSFAC yes 112507740
chr19 13180406 13180427 ZNF263 JASPAR yes 70808278
chr19 13180406 13180427 ZNF263 JASPAR yes 112507741
chr19 13180407 13180428 ZNF263 JASPAR yes 70808279
chr19 13180407 13180428 ZNF263 JASPAR yes 112507742
chr19 13180413 13180431 ESR1 JASPAR yes 70808280
chr19 13180413 13180431 ESR1 JASPAR yes 112507743
chr19 13180417 13180427 ZNF740 JASPAR yes 70808281
chr19 13180417 13180427 ZNF740 JASPAR yes 112507744
chr19 13180435 13180453 ESR1 JASPAR yes 70808282
chr19 13180435 13180453 ESR1 JASPAR yes 112507745
chr19 13180448 13180462 GLIS3 JASPAR yes 70808283
chr19 13180448 13180462 GLIS3 JASPAR yes 112507746
chr19 13180530 13180534 H4TF2 TRANSFAC yes 70808284
chr19 13180530 13180534 H4TF2 TRANSFAC yes 112507747
chr19 13180533 13180539 SP1 TRANSFAC yes 70808285
chr19 13180533 13180539 SP1 TRANSFAC yes 112507748
chr19 13180533 13180547 ZIC1 JASPAR yes 70808286
chr19 13180533 13180547 ZIC1 JASPAR yes 112507749
chr19 13180533 13180548 ZIC3 JASPAR yes 70808287
chr19 13180533 13180548 ZIC4 JASPAR yes 70808288
chr19 13180533 13180548 ZIC3 JASPAR yes 112507750
chr19 13180533 13180548 ZIC4 JASPAR yes 112507751
chr19 13180547 13180553 NFIC JASPAR yes 70808289
chr19 13180547 13180553 NFIC JASPAR yes 112507752
chr19 13180555 13180559 LFA1 TRANSFAC yes 70808290
chr19 13180555 13180559 LFA1 TRANSFAC yes 112507753
chr19 13180566 13180571 SP1 TRANSFAC yes 70808291
chr19 13180566 13180571 SP1 TRANSFAC yes 112507754
chr19 13180580 13180594 GATA2 JASPAR yes 70808292
chr19 13180580 13180594 GATA2 JASPAR yes 112507755
chr19 13180582 13180590 GATA3 JASPAR yes 70808293
chr19 13180582 13180590 GATA3 JASPAR yes 112507756
chr19 13180583 13180597 POU4F1 JASPAR yes 70808294
chr19 13180583 13180597 POU4F1 JASPAR yes 112507757
chr19 13180616 13180619 MYB TRANSFAC yes 70808295
chr19 13180616 13180619 MYB TRANSFAC yes 112507758
chr19 13180621 13180627 ZNF354C JASPAR yes 70808296
chr19 13180621 13180627 ZNF354C JASPAR yes 112507759
chr19 13180628 13180639 FOXH1 JASPAR yes 70808297
chr19 13180628 13180639 FOXH1 JASPAR yes 112507760
chr19 13180632 13180636 YY1 TRANSFAC yes 70808298
chr19 13180632 13180636 YY1 TRANSFAC yes 112507761
chr19 13180638 13180648 TFAP4 JASPAR yes 70808299
chr19 13180638 13180648 TFAP4 JASPAR yes 112507762
chr19 13180651 13180665 GATA2 JASPAR yes 70808300
chr19 13180651 13180665 GATA2 JASPAR yes 112507763
chr19 13180653 13180659 GATA1 TRANSFAC yes 70808301
chr19 13180653 13180659 GATA1 TRANSFAC yes 112507764
chr19 13180672 13180680 GATA3 JASPAR yes 70808302
chr19 13180672 13180680 GATA3 JASPAR yes 112507765
chr19 13180693 13180714 ZNF263 JASPAR yes 70808303
chr19 13180693 13180714 ZNF263 JASPAR yes 112507766
chr19 13180699 13180714 TFAP2C JASPAR yes 70808304
chr19 13180699 13180714 TFAP2C JASPAR yes 112507767
chr19 13180704 13180709 TFAP2A TRANSFAC yes 70808305
chr19 13180704 13180709 TFAP2A TRANSFAC yes 112507768
chr19 13180704 13180710 MZF1 JASPAR yes 70808306
chr19 13180704 13180710 MZF1 JASPAR yes 112507769
chr19 13180704 13180714 SP1 JASPAR yes 70808307
chr19 13180704 13180714 SP1 JASPAR yes 112507770
chr19 13180706 13180712 MAZ TRANSFAC yes 70808308
chr19 13180706 13180712 MAZ TRANSFAC yes 112507771
chr19 13180711 13180715 LFA1 TRANSFAC yes 70808309
chr19 13180711 13180715 LFA1 TRANSFAC yes 112507772
chr19 13180723 13180728 SP1 TRANSFAC yes 70808310
chr19 13180723 13180728 SP1 TRANSFAC yes 112507773
chr19 13180723 13180733 REL JASPAR yes 70808311
chr19 13180723 13180733 REL JASPAR yes 112507774
chr19 13180726 13180740 SPI1 JASPAR yes 70808312
chr19 13180726 13180740 SPI1 JASPAR yes 112507775
chr19 13180727 13180735 EHF JASPAR yes 70808313
chr19 13180727 13180735 EHF JASPAR yes 112507776
chr19 13180739 13180743 NFE TRANSFAC yes 70808314
chr19 13180739 13180743 NFE TRANSFAC yes 112507777
chr19 13180753 13180766 NFKB1 JASPAR yes 70808315
chr19 13180753 13180766 NFKB2 JASPAR yes 70808316
chr19 13180753 13180766 NFKB1 JASPAR yes 112507778
chr19 13180753 13180766 NFKB2 JASPAR yes 112507779
chr19 13180758 13180763 GATA2 JASPAR yes 70808317
chr19 13180758 13180763 GATA2 JASPAR yes 112507780
chr19 13180761 13180767 SP1 TRANSFAC yes 70808318
chr19 13180761 13180767 SP1 TRANSFAC yes 112507781
chr19 13180761 13180771 SP1 JASPAR yes 70808319
chr19 13180761 13180771 SP1 JASPAR yes 112507782
chr19 13180762 13180777 TFAP2A JASPAR yes 70808320
chr19 13180762 13180777 TFAP2C JASPAR yes 70808321
chr19 13180762 13180777 TFAP2A JASPAR yes 112507783
chr19 13180762 13180777 TFAP2C JASPAR yes 112507784
chr19 13180764 13180772 SP1 TRANSFAC yes 70808322
chr19 13180764 13180772 SP1 TRANSFAC yes 112507785
chr19 13180764 13180778 EBF1 JASPAR yes 70808323
chr19 13180764 13180778 EBF1 JASPAR yes 112507786
chr19 13180770 13180783 NFKB1 JASPAR yes 70808324
chr19 13180770 13180783 NFKB1 JASPAR yes 112507787
chr19 13180771 13180782 NFKB1 JASPAR yes 70808325
chr19 13180771 13180782 NFKB1 JASPAR yes 112507788
chr19 13180772 13180777 ETS2 TRANSFAC yes 70808326
chr19 13180772 13180777 ETS2 TRANSFAC yes 112507789
chr19 13180772 13180782 RELA JASPAR yes 70808327
chr19 13180772 13180782 RELA JASPAR yes 112507790
chr19 13180773 13180788 TP53 JASPAR yes 70808328
chr19 13180773 13180788 TP53 JASPAR yes 112507791
chr19 13180786 13180791 ETS2 TRANSFAC yes 70808329
chr19 13180786 13180791 ETS2 TRANSFAC yes 112507792
chr19 13180793 13180806 ZBED1 JASPAR yes 70808330
chr19 13180793 13180806 ZBED1 JASPAR yes 112507793
SNP sites on vista28687[chr19:13180372-13180812]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 13180402 rs117277299 G C
CCNT2 GATA1 POLR2A
5448585
chr19 13180461 rs370361510 C T
CCNT2 EP300 GATA1 GATA2 GLIS3 MAX MYC PML POLR2A RCOR1 TAL1 TEAD4
5448586
chr19 13180691 rs547368773 C G
CCNT2 EP300 GATA1 GATA2 MAX MYC NR2F2 PML POLR2A RCOR1 TAL1 TEAD4
5448587
Genes possibly regulated by vista28687[chr19:13180372-13180812]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 13106422 13209610 + NFIX ENSG00000008441.12 13106422 0.8 0.99 17111 26050
chr19 13209847 13213975 - LYL1 ENSG00000104903.4 13213975 0.92 0.93 17112 66837
chr19 13215716 13228381 - TRMT1 ENSG00000104907.8 13228381 0.6 1.0 17113 52431
chr19 13228917 13251955 + NACC1 ENSG00000160877.5 13228917 0.67 1.0 17114 51895
chr19 13254872 13261197 - STX10 ENSG00000104915.10 13261197 0.58 1.0 17115 19615
chr19 13261229 13265722 + IER2 ENSG00000160888.6 13261229 0.7 1.0 17116 19583
Expression level of Genes
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miRNAs possibly regulated by vista28687[chr19:13180372-13180812]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results