EnhancerDB
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  3. rs117277299[chr19:13180402]
Enhancers that have rs117277299[chr19:13180402]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 13160145 13191995 enh17930
Astrocyte Colon (HCT116) Pancreas Uterus Kidney Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Prostate (PC-3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Lung Muscle (A673) Heart
chr19 13180372 13180812 vista28687
VISTA
Transcript factors that have rs117277299[chr19:13180402]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 13179715 13180636 ZNF274 GTRD no Blood (GM12878) 108388647
chr19 13180005 13182585 ZNF274 GTRD no Blood (GM12878) 108388648
chr19 13180005 13182585 ZNF274 GTRD no Blood (GM12878) 108388649
chr19 13180057 13180781 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108388650
chr19 13180065 13181138 ZNF274 GTRD no Blood (GM12878) 108388651
chr19 13180249 13180649 ZNF274 GTRD no Bone Marrow (K562) 108388652
chr19 13180263 13180907 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108388653
chr19 13180292 13180999 GATA1 UCSC Txn Factor no Conserved 108388654
chr19 13180300 13180796 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108388655
chr19 13180332 13181094 POLR2A UCSC Txn Factor no Conserved 108388656
chr19 13180346 13180750 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108388657
chr19 13180380 13180847 TCF7L2 GTRD no Colon (HCT116) 21850661
chr19 13180380 13180847 TCF7L2 GTRD no Colon (HCT116) 108388658
chr19 13180386 13180751 CCNT2 UCSC Txn Factor no Conserved 108388659
chr19 13180386 13180751 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108388660
chr19 13180392 13180712 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108388661
Genes associated with rs117277299[chr19:13180402], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More