EnhancerDB
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  3. vista28725[chr19:13995440-13995781]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista28725[chr19:13995440-13995781]
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Tissue distribution of vista28725
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Transcription factor that possibly regulate vista28725[chr19:13995440-13995781]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr19 13995438 13995453 FOXP1 JASPAR yes 70811175
chr19 13995438 13995453 FOXP1 JASPAR yes 112540310
chr19 13995439 13995454 FOXP1 JASPAR yes 70811176
chr19 13995439 13995454 FOXP1 JASPAR yes 112540311
chr19 13995440 13995455 FOXP1 JASPAR yes 70811177
chr19 13995440 13995455 FOXP1 JASPAR yes 112540312
chr19 13995441 13995456 FOXP1 JASPAR yes 70811178
chr19 13995441 13995456 FOXP1 JASPAR yes 112540313
chr19 13995441 13995462 IRF1 JASPAR yes 70811179
chr19 13995441 13995462 IRF1 JASPAR yes 112540314
chr19 13995442 13995457 FOXP1 JASPAR yes 70811180
chr19 13995442 13995457 FOXP1 JASPAR yes 112540315
chr19 13995442 13995463 IRF1 JASPAR yes 70811181
chr19 13995442 13995463 IRF1 JASPAR yes 112540316
chr19 13995443 13995458 FOXP1 JASPAR yes 70811182
chr19 13995443 13995458 FOXP1 JASPAR yes 112540317
chr19 13995458 13995468 GABPA JASPAR yes 70811183
chr19 13995458 13995468 GABPA JASPAR yes 112540318
chr19 13995460 13995466 ETS1 JASPAR yes 70811184
chr19 13995460 13995466 SPI1 JASPAR yes 70811185
chr19 13995460 13995466 ETS1 JASPAR yes 112540319
chr19 13995460 13995466 SPI1 JASPAR yes 112540320
chr19 13995476 13995496 RREB1 JASPAR yes 70811186
chr19 13995476 13995496 RREB1 JASPAR yes 112540321
chr19 13995486 13995496 ZNF740 JASPAR yes 70811187
chr19 13995486 13995496 ZNF740 JASPAR yes 112540322
chr19 13995489 13995509 RREB1 JASPAR yes 70811188
chr19 13995489 13995509 RREB1 JASPAR yes 112540323
chr19 13995493 13995508 RUNX2 JASPAR yes 70811189
chr19 13995493 13995508 RUNX2 JASPAR yes 112540324
chr19 13995503 13995512 SNAI2 JASPAR yes 70811190
chr19 13995503 13995512 SNAI2 JASPAR yes 112540325
chr19 13995503 13995513 ID4 JASPAR yes 70811191
chr19 13995503 13995513 TCF3 JASPAR yes 70811192
chr19 13995503 13995513 TCF4 JASPAR yes 70811193
chr19 13995503 13995513 ID4 JASPAR yes 112540326
chr19 13995503 13995513 TCF3 JASPAR yes 112540327
chr19 13995503 13995513 TCF4 JASPAR yes 112540328
chr19 13995531 13995540 SNAI2 JASPAR yes 70811194
chr19 13995531 13995540 SNAI2 JASPAR yes 112540329
chr19 13995531 13995541 FIGLA JASPAR yes 70811195
chr19 13995531 13995541 FIGLA JASPAR yes 112540330
chr19 13995533 13995548 RFX5 JASPAR yes 70811196
chr19 13995533 13995548 RFX5 JASPAR yes 112540331
chr19 13995542 13995547 SP1 TRANSFAC yes 70811197
chr19 13995542 13995547 SP1 TRANSFAC yes 112540332
chr19 13995543 13995548 SP1 TRANSFAC yes 70811198
chr19 13995543 13995548 SP1 TRANSFAC yes 112540333
chr19 13995555 13995560 SP1 TRANSFAC yes 70811199
chr19 13995555 13995560 SP1 TRANSFAC yes 112540334
chr19 13995563 13995568 SP1 TRANSFAC yes 70811200
chr19 13995563 13995568 SP1 TRANSFAC yes 112540335
chr19 13995574 13995579 SP1 TRANSFAC yes 70811201
chr19 13995574 13995579 SP1 TRANSFAC yes 112540336
chr19 13995578 13995593 TFAP2A JASPAR yes 70811202
chr19 13995578 13995593 TFAP2C JASPAR yes 70811203
chr19 13995578 13995593 TFAP2A JASPAR yes 112540337
chr19 13995578 13995593 TFAP2C JASPAR yes 112540338
chr19 13995581 13995592 TFAP2A JASPAR yes 70811204
chr19 13995581 13995592 TFAP2B JASPAR yes 70811205
chr19 13995581 13995592 TFAP2C JASPAR yes 70811206
chr19 13995581 13995592 TFAP2A JASPAR yes 112540339
chr19 13995581 13995592 TFAP2B JASPAR yes 112540340
chr19 13995581 13995592 TFAP2C JASPAR yes 112540341
chr19 13995582 13995591 TFAP2A JASPAR yes 70811207
chr19 13995582 13995591 TFAP2A JASPAR yes 112540342
chr19 13995606 13995625 RFX2 JASPAR yes 70811208
chr19 13995606 13995625 RFX2 JASPAR yes 112540343
chr19 13995608 13995616 MEIS2 JASPAR yes 70811209
chr19 13995608 13995616 MEIS3 JASPAR yes 70811210
chr19 13995608 13995616 MEIS2 JASPAR yes 112540344
chr19 13995608 13995616 MEIS3 JASPAR yes 112540345
chr19 13995608 13995620 IRF1 JASPAR yes 70811211
chr19 13995608 13995620 IRF1 JASPAR yes 112540346
chr19 13995608 13995623 RFX5 JASPAR yes 70811212
chr19 13995608 13995623 RFX5 JASPAR yes 112540347
chr19 13995609 13995613 NFE TRANSFAC yes 70811213
chr19 13995609 13995613 NFE TRANSFAC yes 112540348
chr19 13995610 13995626 RFX2 JASPAR yes 70811214
chr19 13995610 13995626 RFX3 JASPAR yes 70811215
chr19 13995610 13995626 RFX4 JASPAR yes 70811216
chr19 13995610 13995626 RFX5 JASPAR yes 70811217
chr19 13995610 13995626 RFX2 JASPAR yes 112540349
chr19 13995610 13995626 RFX3 JASPAR yes 112540350
chr19 13995610 13995626 RFX4 JASPAR yes 112540351
chr19 13995610 13995626 RFX5 JASPAR yes 112540352
chr19 13995611 13995630 RFX2 JASPAR yes 70811218
chr19 13995611 13995630 RFX2 JASPAR yes 112540353
chr19 13995616 13995626 NFATC3 JASPAR yes 70811219
chr19 13995616 13995626 NFATC3 JASPAR yes 112540354
chr19 13995622 13995632 MYF6 JASPAR yes 70811220
chr19 13995622 13995632 MYF6 JASPAR yes 112540355
chr19 13995627 13995631 NFE TRANSFAC yes 70811221
chr19 13995627 13995631 NFE TRANSFAC yes 112540356
chr19 13995648 13995652 ESR1 TRANSFAC yes 70811222
chr19 13995648 13995652 ESR1 TRANSFAC yes 112540357
chr19 13995660 13995673 SMAD2 JASPAR yes 70811223
chr19 13995660 13995673 SMAD2 JASPAR yes 112540358
chr19 13995701 13995716 TFAP2A JASPAR yes 70811224
chr19 13995701 13995716 TFAP2A JASPAR yes 112540359
chr19 13995704 13995715 TFAP2A JASPAR yes 70811225
chr19 13995704 13995715 TFAP2A JASPAR yes 112540360
chr19 13995704 13995716 TFAP2B JASPAR yes 70811226
chr19 13995704 13995716 TFAP2C JASPAR yes 70811227
chr19 13995704 13995716 TFAP2B JASPAR yes 112540361
chr19 13995704 13995716 TFAP2C JASPAR yes 112540362
chr19 13995706 13995726 RREB1 JASPAR yes 70811228
chr19 13995706 13995726 RREB1 JASPAR yes 112540363
chr19 13995728 13995744 ZNF143 JASPAR yes 70811229
chr19 13995728 13995744 ZNF143 JASPAR yes 112540364
chr19 13995729 13995734 SP1 TRANSFAC yes 70811230
chr19 13995729 13995734 SP1 TRANSFAC yes 112540365
chr19 13995729 13995743 PLAG1 JASPAR yes 70811231
chr19 13995729 13995743 PLAG1 JASPAR yes 112540366
chr19 13995734 13995749 HSF1 JASPAR yes 70811232
chr19 13995734 13995749 HSF1 JASPAR yes 112540367
chr19 13995739 13995754 HSF1 JASPAR yes 70811233
chr19 13995739 13995754 HSF1 JASPAR yes 112540368
chr19 13995754 13995775 REST JASPAR yes 70811234
chr19 13995754 13995775 REST JASPAR yes 112540369
chr19 13995762 13995767 SP1 TRANSFAC yes 70811235
chr19 13995762 13995767 SP1 TRANSFAC yes 112540370
chr19 13995763 13995773 ZNF740 JASPAR yes 70811236
chr19 13995763 13995773 ZNF740 JASPAR yes 112540371
chr19 13995764 13995769 TFAP2A TRANSFAC yes 70811237
chr19 13995764 13995769 TFAP2A TRANSFAC yes 112540372
chr19 13995764 13995770 MZF1 JASPAR yes 70811238
chr19 13995764 13995770 MZF1 JASPAR yes 112540373
chr19 13995764 13995774 SP1 JASPAR yes 70811239
chr19 13995764 13995774 SP1 JASPAR yes 112540374
chr19 13995765 13995774 SP1 TRANSFAC yes 70811240
chr19 13995765 13995774 SP1 TRANSFAC yes 112540375
chr19 13995766 13995772 MAZ TRANSFAC yes 70811241
chr19 13995766 13995772 MAZ TRANSFAC yes 112540376
SNP sites on vista28725[chr19:13995440-13995781]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr19 13995441 rs569044027 C CA,CAA
FOXP1 IRF1
5452383
chr19 13995526 rs7248632 A G no 5452384
chr19 13995561 rs199932789 CACCCGCCCTAA C no 5452385
chr19 13995565 rs76374744 C T
SP1
5452386
chr19 13995577 rs569314457 G A
SP1
5452387
chr19 13995590 rs552054285 G C
TFAP2A TFAP2B TFAP2C
5452388
Genes possibly regulated by vista28725[chr19:13995440-13995781]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr19 13890884 13900972 - AC008686.1 ENSG00000214109.3 13900972 1.0 1.0 17121 5532
chr19 13906274 13943044 + ZSWIM4 ENSG00000132003.5 13906274 0.69 1.0 17122 10834
chr19 13972877 13991571 + NANOS3 ENSG00000187556.6 13972877 0.81 1.0 17123 77437
chr19 13993161 14017265 - C19orf57 ENSG00000132016.7 14017265 0.81 1.0 17124 78516
chr19 14017014 14041692 + CC2D1A ENSG00000132024.13 14017014 0.56 1.0 17125 78767
chr19 14042000 14064204 - PODNL1 ENSG00000132000.7 14064204 0.89 0.99 17126 31577
chr19 14063304 14072254 + DCAF15 ENSG00000132017.6 14063304 0.67 1.0 17127 32477
Expression level of Genes
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miRNAs possibly regulated by vista28725[chr19:13995440-13995781]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results