-
Home
- SNP
- rs552054285[chr19:13995590]
Enhancers that have rs552054285[chr19:13995590]
Back to top
| Chrom. |
Start |
End |
Enhancer ID |
Tissues that enhancer appears |
More |
| chr19 |
13993885 |
13998035 |
enh109827 |
|
|
| chr19 |
13995440 |
13995781 |
vista28725 |
|
|
Transcript factors that have rs552054285[chr19:13995590]
Back to top
| Chrom. |
Start |
End |
TF name |
Source |
Predicted site? |
Tissue |
id |
More |
|
chr19
|
13995035
|
13995780
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
108390755
|
|
|
chr19
|
13995059
|
13995720
|
ZNF143
|
GTRD
|
no
|
Epithelial (MCF-7)
|
108390756
|
|
|
chr19
|
13995092
|
13995599
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
108390757
|
|
|
chr19
|
13995578
|
13995593
|
TFAP2A
|
JASPAR
|
yes
|
|
70811202
|
|
|
chr19
|
13995578
|
13995593
|
TFAP2C
|
JASPAR
|
yes
|
|
70811203
|
|
|
chr19
|
13995578
|
13995593
|
TFAP2A
|
JASPAR
|
yes
|
|
112540337
|
|
|
chr19
|
13995578
|
13995593
|
TFAP2C
|
JASPAR
|
yes
|
|
112540338
|
|
|
chr19
|
13995581
|
13995592
|
TFAP2A
|
JASPAR
|
yes
|
|
70811204
|
|
|
chr19
|
13995581
|
13995592
|
TFAP2B
|
JASPAR
|
yes
|
|
70811205
|
|
|
chr19
|
13995581
|
13995592
|
TFAP2C
|
JASPAR
|
yes
|
|
70811206
|
|
|
chr19
|
13995581
|
13995592
|
TFAP2A
|
JASPAR
|
yes
|
|
112540339
|
|
|
chr19
|
13995581
|
13995592
|
TFAP2B
|
JASPAR
|
yes
|
|
112540340
|
|
|
chr19
|
13995581
|
13995592
|
TFAP2C
|
JASPAR
|
yes
|
|
112540341
|
|
|
chr19
|
13995582
|
13995591
|
TFAP2A
|
JASPAR
|
yes
|
|
70811207
|
|
|
chr19
|
13995582
|
13995591
|
TFAP2A
|
JASPAR
|
yes
|
|
112540342
|
|
Genes associated with rs552054285[chr19:13995590], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
| Chrom. |
Start |
End |
Strand |
Gene name |
Ensembl ID |
TSS of gene |
Distance between TSS and SNP |
Tissue |
q Value |
id |
More |