EnhancerDB
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  3. vista2949[chr1:111762260-111762740]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista2949[chr1:111762260-111762740]
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Tissue distribution of vista2949
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Transcription factor that possibly regulate vista2949[chr1:111762260-111762740]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 111762140 111765455 POLR2A UCSC Txn Factor no Conserved 107821986
chr1 111762140 111765455 POLR2A UCSC Txn Factor no Conserved 107821987
chr1 111762252 111762813 ATF2 UCSC Txn Factor no Conserved 107821990
chr1 111762273 111762780 BCL3 UCSC Txn Factor no Conserved 107821992
chr1 111762276 111762826 RUNX3 UCSC Txn Factor no Conserved 107821994
chr1 111762278 111762858 NFIC UCSC Txn Factor no Conserved 107821996
chr1 111762464 111762780 EBF1 UCSC Txn Factor no Conserved 107822015
chr1 111762474 111762724 SPI1 UCSC Txn Factor no Conserved 107822017
chr1 111762512 111762746 IRF4 UCSC Txn Factor no Conserved 107822024
chr1 111762561 111762871 POU2F2 UCSC Txn Factor no Conserved 107822035
chr1 111762298 111762304 SOX10 JASPAR yes 31514442
chr1 111762298 111762304 SOX10 JASPAR yes 118351521
chr1 111762319 111762338 REST JASPAR yes 31514443
chr1 111762319 111762338 REST JASPAR yes 118351522
chr1 111762324 111762338 PLAG1 JASPAR yes 31514444
chr1 111762324 111762338 PLAG1 JASPAR yes 118351523
chr1 111762331 111762345 GLIS2 JASPAR yes 31514445
chr1 111762331 111762345 GLIS3 JASPAR yes 31514446
chr1 111762331 111762345 GLIS2 JASPAR yes 118351524
chr1 111762331 111762345 GLIS3 JASPAR yes 118351525
chr1 111762335 111762341 SP1 TRANSFAC yes 31514447
chr1 111762335 111762341 SP1 TRANSFAC yes 118351526
chr1 111762347 111762361 MTF1 JASPAR yes 31514448
chr1 111762347 111762361 MTF1 JASPAR yes 118351527
chr1 111762353 111762367 MTF1 JASPAR yes 31514449
chr1 111762353 111762367 MTF1 JASPAR yes 118351528
chr1 111762366 111762371 MYC TRANSFAC yes 31514450
chr1 111762366 111762371 MYC TRANSFAC yes 118351529
chr1 111762373 111762379 MAZ TRANSFAC yes 31514451
chr1 111762373 111762379 MAZ TRANSFAC yes 118351530
chr1 111762380 111762390 SREBF1 JASPAR yes 31514452
chr1 111762380 111762390 SREBF2 JASPAR yes 31514453
chr1 111762380 111762390 SREBF1 JASPAR yes 118351531
chr1 111762380 111762390 SREBF2 JASPAR yes 118351532
chr1 111762387 111762391 YY1 TRANSFAC yes 31514454
chr1 111762387 111762391 YY1 TRANSFAC yes 118351533
chr1 111762388 111762403 FOXP1 JASPAR yes 31514455
chr1 111762388 111762403 FOXP1 JASPAR yes 118351534
chr1 111762389 111762398 SRY JASPAR yes 31514456
chr1 111762389 111762398 SRY JASPAR yes 118351535
chr1 111762389 111762400 FOXP2 JASPAR yes 31514457
chr1 111762389 111762400 FOXP2 JASPAR yes 118351536
chr1 111762389 111762401 FOXC2 JASPAR yes 31514458
chr1 111762389 111762401 FOXC2 JASPAR yes 118351537
chr1 111762390 111762401 FOXC1 JASPAR yes 31514459
chr1 111762390 111762401 FOXC1 JASPAR yes 118351538
chr1 111762391 111762399 FOXO3 JASPAR yes 31514460
chr1 111762391 111762399 FOXO3 JASPAR yes 118351539
chr1 111762391 111762402 FOXA1 JASPAR yes 31514461
chr1 111762391 111762402 FOXA1 JASPAR yes 118351540
chr1 111762414 111762425 CEBPB JASPAR yes 31514462
chr1 111762414 111762425 CEBPB JASPAR yes 118351541
chr1 111762424 111762439 FOXP1 JASPAR yes 31514463
chr1 111762424 111762439 FOXP1 JASPAR yes 118351542
chr1 111762426 111762437 FOXC1 JASPAR yes 31514464
chr1 111762426 111762437 FOXC1 JASPAR yes 118351543
chr1 111762426 111762438 FOXC2 JASPAR yes 31514465
chr1 111762426 111762438 FOXC2 JASPAR yes 118351544
chr1 111762427 111762438 FOXP2 JASPAR yes 31514466
chr1 111762427 111762438 FOXP2 JASPAR yes 118351545
chr1 111762428 111762436 FOXO3 JASPAR yes 31514467
chr1 111762428 111762436 FOXO3 JASPAR yes 118351546
chr1 111762429 111762438 SRY JASPAR yes 31514468
chr1 111762429 111762438 SRY JASPAR yes 118351547
chr1 111762430 111762442 PBX1 JASPAR yes 31514469
chr1 111762430 111762442 PBX1 JASPAR yes 118351548
chr1 111762447 111762451 YY1 TRANSFAC yes 31514470
chr1 111762447 111762451 YY1 TRANSFAC yes 118351549
chr1 111762512 111762519 NKX3-1 JASPAR yes 31514471
chr1 111762512 111762519 NKX3-1 JASPAR yes 118351550
chr1 111762522 111762532 TBX21 JASPAR yes 31514472
chr1 111762522 111762532 TBX21 JASPAR yes 118351551
chr1 111762522 111762533 TBX20 JASPAR yes 31514473
chr1 111762522 111762533 TBX2 JASPAR yes 31514474
chr1 111762522 111762533 TBX20 JASPAR yes 118351552
chr1 111762522 111762533 TBX2 JASPAR yes 118351553
chr1 111762522 111762535 EOMES JASPAR yes 31514475
chr1 111762522 111762535 EOMES JASPAR yes 118351554
chr1 111762523 111762531 MGA JASPAR yes 31514476
chr1 111762523 111762531 TBX1 JASPAR yes 31514477
chr1 111762523 111762531 MGA JASPAR yes 118351555
chr1 111762523 111762531 TBX1 JASPAR yes 118351556
chr1 111762523 111762533 TBR1 JASPAR yes 31514478
chr1 111762523 111762533 TBR1 JASPAR yes 118351557
chr1 111762533 111762537 YY1 TRANSFAC yes 31514479
chr1 111762533 111762537 YY1 TRANSFAC yes 118351558
chr1 111762539 111762549 NFATC3 JASPAR yes 31514480
chr1 111762539 111762549 NFATC3 JASPAR yes 118351559
chr1 111762585 111762606 ZNF263 JASPAR yes 31514481
chr1 111762585 111762606 ZNF263 JASPAR yes 118351560
chr1 111762592 111762613 IRF1 JASPAR yes 31514482
chr1 111762592 111762613 IRF1 JASPAR yes 118351561
chr1 111762595 111762602 PEA3 TRANSFAC yes 31514483
chr1 111762595 111762602 PEA3 TRANSFAC yes 118351562
chr1 111762596 111762610 STAT1 JASPAR yes 31514484
chr1 111762596 111762610 STAT1 JASPAR yes 118351563
chr1 111762596 111762611 STAT2 JASPAR yes 31514485
chr1 111762596 111762611 STAT2 JASPAR yes 118351564
chr1 111762608 111762628 RREB1 JASPAR yes 31514486
chr1 111762608 111762628 RREB1 JASPAR yes 118351565
chr1 111762612 111762617 SP1 TRANSFAC yes 31514487
chr1 111762612 111762617 SP1 TRANSFAC yes 118351566
chr1 111762616 111762621 SP1 TRANSFAC yes 31514488
chr1 111762616 111762621 SP1 TRANSFAC yes 118351567
chr1 111762625 111762631 PEA3 TRANSFAC yes 31514489
chr1 111762625 111762631 PEA3 TRANSFAC yes 118351568
chr1 111762626 111762636 TEAD1 JASPAR yes 31514490
chr1 111762626 111762636 TEAD4 JASPAR yes 31514491
chr1 111762626 111762636 TEAD1 JASPAR yes 118351569
chr1 111762626 111762636 TEAD4 JASPAR yes 118351570
chr1 111762641 111762656 SOX21 JASPAR yes 31514492
chr1 111762641 111762656 SOX21 JASPAR yes 118351571
chr1 111762641 111762657 SOX4 JASPAR yes 31514493
chr1 111762641 111762657 SOX4 JASPAR yes 118351572
chr1 111762642 111762648 SOX10 JASPAR yes 31514494
chr1 111762642 111762648 SOX10 JASPAR yes 118351573
chr1 111762647 111762659 MEF2A JASPAR yes 31514495
chr1 111762647 111762659 MEF2D JASPAR yes 31514496
chr1 111762647 111762659 MEF2A JASPAR yes 118351574
chr1 111762647 111762659 MEF2D JASPAR yes 118351575
chr1 111762648 111762657 SOX9 JASPAR yes 31514497
chr1 111762648 111762657 SOX9 JASPAR yes 118351576
chr1 111762701 111762711 TBR1 JASPAR yes 31514498
chr1 111762701 111762711 TBR1 JASPAR yes 118351577
chr1 111762711 111762725 CREB3L1 JASPAR yes 31514499
chr1 111762711 111762725 CREB3L1 JASPAR yes 118351578
chr1 111762727 111762746 REST JASPAR yes 31514500
chr1 111762727 111762746 REST JASPAR yes 118351579
SNP sites on vista2949[chr1:111762260-111762740]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 111762338 rs563538258 C A,T
ATF2 BCL3 GLIS2 GLIS3 NFIC PLAG1 POLR2A REST RUNX3 SP1
557264
chr1 111762428 rs4838892 A C
ATF2 BCL3 FOXC1 FOXC2 FOXO3 FOXP1 FOXP2 NFIC POLR2A RUNX3
557265
chr1 111762473 rs116139733 C T
ATF2 BCL3 EBF1 NFIC POLR2A RUNX3
557266
chr1 111762474 rs143802693 G A,T
ATF2 BCL3 EBF1 NFIC POLR2A RUNX3 SPI1
557267
chr1 111762482 rs2764546 G A
ATF2 BCL3 EBF1 NFIC POLR2A RUNX3 SPI1
557268
chr1 111762526 rs4838893 G A
ATF2 BCL3 EBF1 EOMES IRF4 MGA NFIC POLR2A RUNX3 SPI1 TBR1 TBX1 TBX2 TBX20 TBX21
557269
chr1 111762724 rs146930297 C T
ATF2 BCL3 CREB3L1 EBF1 IRF4 NFIC POLR2A POU2F2 RUNX3 SPI1
557270
Genes possibly regulated by vista2949[chr1:111762260-111762740]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 111659955 111682838 - DRAM2 ENSG00000156171.10 111682838 0.65 1.0 1007 20578
chr1 111682249 111727724 + CEPT1 ENSG00000134255.9 111682249 0.78 0.99 1008 19989
chr1 111729796 111747157 - DENND2D ENSG00000162777.12 111747157 0.9 1.0 1009 84897
chr1 111743393 111786062 + CHI3L2 ENSG00000064886.9 111743393 0.98 0.99 1010 81133
chr1 111833484 111863188 + CHIA ENSG00000134216.14 111833484 1.0 0.0 1011 29256
Expression level of Genes
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miRNAs possibly regulated by vista2949[chr1:111762260-111762740]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results