EnhancerDB
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  3. rs563538258[chr1:111762338]
Enhancers that have rs563538258[chr1:111762338]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 111752645 111768115 enh564
Skin (Keratinocyte) Liver (HepG2) Large Intestine Blood (T-cell) Esophagus Liver Blood (OCI-LY7) Blood (GM12878) Placenta Peripheral Blood (MM.1S) Blood (Karpas-422) Breast Pancreas (Panc1) Thymus Stomach
chr1 111762260 111762740 vista2949
VISTA
Transcript factors that have rs563538258[chr1:111762338]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 111761995 111762531 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21329149
chr1 111761995 111762531 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107821980
chr1 111762083 111762353 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21329150
chr1 111762083 111762353 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107821981
chr1 111762101 111762537 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21329151
chr1 111762101 111762537 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107821982
chr1 111762102 111762850 ZBTB33 GTRD no Brain (SK-N-SH) 107821983
chr1 111762126 111762804 ZBTB33 GTRD no Brain (SK-N-SH) 107821984
chr1 111762135 111762647 ZBTB33 GTRD no Brain (SK-N-SH) 107821985
chr1 111762140 111765455 POLR2A UCSC Txn Factor no Conserved 107821986
chr1 111762140 111765455 POLR2A UCSC Txn Factor no Conserved 107821987
chr1 111762158 111762636 ZBTB33 GTRD no Brain (SK-N-SH) 107821988
chr1 111762180 111762616 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21329152
chr1 111762180 111762616 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107821989
chr1 111762252 111762813 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21329153
chr1 111762252 111762813 ATF2 UCSC Txn Factor no Conserved 107821990
chr1 111762252 111762813 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107821991
chr1 111762273 111762780 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21329154
chr1 111762273 111762780 BCL3 UCSC Txn Factor no Conserved 107821992
chr1 111762273 111762780 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107821993
chr1 111762276 111762826 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21329155
chr1 111762276 111762826 RUNX3 UCSC Txn Factor no Conserved 107821994
chr1 111762276 111762826 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107821995
chr1 111762278 111762858 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21329156
chr1 111762278 111762858 NFIC UCSC Txn Factor no Conserved 107821996
chr1 111762278 111762858 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107821997
chr1 111762290 111762480 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21329157
chr1 111762290 111762480 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107821998
chr1 111762319 111762338 REST JASPAR yes 31514443
chr1 111762319 111762338 REST JASPAR yes 118351522
chr1 111762324 111762338 PLAG1 JASPAR yes 31514444
chr1 111762324 111762338 PLAG1 JASPAR yes 118351523
chr1 111762331 111762345 GLIS2 JASPAR yes 31514445
chr1 111762331 111762345 GLIS3 JASPAR yes 31514446
chr1 111762331 111762345 GLIS2 JASPAR yes 118351524
chr1 111762331 111762345 GLIS3 JASPAR yes 118351525
chr1 111762331 111762847 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21329158
chr1 111762331 111762847 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107821999
chr1 111762335 111762341 SP1 TRANSFAC yes 31514447
chr1 111762335 111762341 SP1 TRANSFAC yes 118351526
Genes associated with rs563538258[chr1:111762338], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More