EnhancerDB
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  3. vista35419[chr2:238578306-238578453]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista35419[chr2:238578306-238578453]
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Tissue distribution of vista35419
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Transcription factor that possibly regulate vista35419[chr2:238578306-238578453]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr2 238578182 238578461 PAX5 UCSC Txn Factor no Conserved 108435935
chr2 238578213 238578531 RUNX3 UCSC Txn Factor no Conserved 108435936
chr2 238578213 238578531 RUNX3 UCSC Txn Factor no Conserved 108435937
chr2 238578301 238578318 PAX1 JASPAR yes 22242061
chr2 238578301 238578318 PAX9 JASPAR yes 22242062
chr2 238578301 238578318 PAX1 JASPAR yes 82130022
chr2 238578301 238578318 PAX9 JASPAR yes 82130023
chr2 238578302 238578321 PAX5 JASPAR yes 22242063
chr2 238578302 238578321 PAX5 JASPAR yes 82130024
chr2 238578378 238578391 HNF1B JASPAR yes 22242064
chr2 238578378 238578391 HNF1B JASPAR yes 82130025
chr2 238578386 238578401 RUNX2 JASPAR yes 22242065
chr2 238578386 238578401 RUNX2 JASPAR yes 82130026
chr2 238578387 238578390 MYB TRANSFAC yes 22242066
chr2 238578387 238578390 MYB TRANSFAC yes 82130027
chr2 238578403 238578415 MEF2A JASPAR yes 22242067
chr2 238578403 238578415 MEF2A JASPAR yes 82130028
chr2 238578411 238578414 MYB TRANSFAC yes 22242068
chr2 238578411 238578414 MYB TRANSFAC yes 82130029
chr2 238578417 238578428 HOXA10 JASPAR yes 22242069
chr2 238578417 238578428 HOXC11 JASPAR yes 22242070
chr2 238578417 238578428 HOXA10 JASPAR yes 82130030
chr2 238578417 238578428 HOXC11 JASPAR yes 82130031
chr2 238578418 238578426 NKX6-1 JASPAR yes 22242071
chr2 238578418 238578426 NKX6-1 JASPAR yes 82130032
chr2 238578418 238578428 HOXC10 JASPAR yes 22242072
chr2 238578418 238578428 HOXD11 JASPAR yes 22242073
chr2 238578418 238578428 HOXC10 JASPAR yes 82130033
chr2 238578418 238578428 HOXD11 JASPAR yes 82130034
chr2 238578418 238578434 POU4F2 JASPAR yes 22242074
chr2 238578418 238578434 POU4F3 JASPAR yes 22242075
chr2 238578418 238578434 POU4F2 JASPAR yes 82130035
chr2 238578418 238578434 POU4F3 JASPAR yes 82130036
chr2 238578420 238578424 YY1 TRANSFAC yes 22242076
chr2 238578420 238578424 YY1 TRANSFAC yes 82130037
chr2 238578421 238578433 HNF1B JASPAR yes 22242077
chr2 238578421 238578433 HNF1B JASPAR yes 82130038
chr2 238578440 238578455 JUND JASPAR yes 22242078
chr2 238578440 238578455 JUND JASPAR yes 82130039
chr2 238578443 238578458 JUND JASPAR yes 22242079
chr2 238578443 238578458 JUND JASPAR yes 82130040
chr2 238578444 238578457 JUN JASPAR yes 22242080
chr2 238578444 238578457 JUN JASPAR yes 82130041
chr2 238578445 238578452 JUN TRANSFAC yes 22242081
chr2 238578445 238578452 JUN TRANSFAC yes 82130042
chr2 238578449 238578466 BCL6B JASPAR yes 22242082
chr2 238578449 238578466 BCL6B JASPAR yes 82130043
SNP sites on vista35419[chr2:238578306-238578453]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr2 238578307 rs7607559 C T
PAX1 PAX5 PAX9 RUNX3
6482251
chr2 238578316 rs144797307 G C
PAX1 PAX5 PAX9 RUNX3
6482252
chr2 238578365 rs4663780 T C
PAX5 RUNX3
6482253
chr2 238578435 rs200221599 CGGCT C
PAX5 RUNX3
6482254
Genes possibly regulated by vista35419[chr2:238578306-238578453]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr2 238482965 238510257 - RAB17 ENSG00000124839.8 238510257 0.89 1.0 3290 31951
chr2 238499663 238504624 + AC104667.3 ENSG00000234949.2 238499663 0.86 1.0 3291 21357
chr2 238536219 238722325 + LRRFIP1 ENSG00000124831.14 238536219 0.62 1.0 3292 57913
Expression level of Genes
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miRNAs possibly regulated by vista35419[chr2:238578306-238578453]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results