EnhancerDB
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  3. vista39975[chr3:12220728-12221239]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista39975[chr3:12220728-12221239]
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Tissue distribution of vista39975
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Transcription factor that possibly regulate vista39975[chr3:12220728-12221239]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 12220742 12220762 TP53 JASPAR yes 462124
chr3 12220742 12220762 TP53 JASPAR yes 70937945
chr3 12220755 12220759 H4TF2 TRANSFAC yes 462125
chr3 12220755 12220759 H4TF2 TRANSFAC yes 70937946
chr3 12220758 12220762 H1TF2 TRANSFAC yes 462126
chr3 12220758 12220762 NFE TRANSFAC yes 462127
chr3 12220758 12220762 SRF TRANSFAC yes 462128
chr3 12220758 12220762 H1TF2 TRANSFAC yes 70937947
chr3 12220758 12220762 NFE TRANSFAC yes 70937948
chr3 12220758 12220762 SRF TRANSFAC yes 70937949
chr3 12220762 12220765 MYB TRANSFAC yes 462129
chr3 12220762 12220765 MYB TRANSFAC yes 70937950
chr3 12220796 12220816 TP63 JASPAR yes 462130
chr3 12220796 12220816 TP63 JASPAR yes 70937951
chr3 12220801 12220805 H4TF2 TRANSFAC yes 462131
chr3 12220801 12220805 H4TF2 TRANSFAC yes 70937952
chr3 12220855 12220865 ELK1 JASPAR yes 462132
chr3 12220855 12220865 ELK1 JASPAR yes 70937953
chr3 12220857 12220866 ELK4 JASPAR yes 462133
chr3 12220857 12220866 ELK4 JASPAR yes 70937954
chr3 12220857 12220867 ELK1 JASPAR yes 462134
chr3 12220857 12220867 ELK3 JASPAR yes 462135
chr3 12220857 12220867 ETS1 JASPAR yes 462136
chr3 12220857 12220867 ETV1 JASPAR yes 462137
chr3 12220857 12220867 ETV4 JASPAR yes 462138
chr3 12220857 12220867 FEV JASPAR yes 462139
chr3 12220857 12220867 FLI1 JASPAR yes 462140
chr3 12220857 12220867 ELK1 JASPAR yes 70937955
chr3 12220857 12220867 ELK3 JASPAR yes 70937956
chr3 12220857 12220867 ETS1 JASPAR yes 70937957
chr3 12220857 12220867 ETV1 JASPAR yes 70937958
chr3 12220857 12220867 ETV4 JASPAR yes 70937959
chr3 12220857 12220867 FEV JASPAR yes 70937960
chr3 12220857 12220867 FLI1 JASPAR yes 70937961
chr3 12220857 12220868 ELK4 JASPAR yes 462141
chr3 12220857 12220868 ELK4 JASPAR yes 70937962
chr3 12220858 12220879 IRF1 JASPAR yes 462142
chr3 12220858 12220879 IRF1 JASPAR yes 70937963
chr3 12220859 12220865 ETS1 JASPAR yes 462143
chr3 12220859 12220865 SPI1 JASPAR yes 462144
chr3 12220859 12220865 ETS1 JASPAR yes 70937964
chr3 12220859 12220865 SPI1 JASPAR yes 70937965
chr3 12220862 12220876 STAT1 JASPAR yes 462145
chr3 12220862 12220876 STAT1 JASPAR yes 70937966
chr3 12220862 12220877 STAT2 JASPAR yes 462146
chr3 12220862 12220877 STAT2 JASPAR yes 70937967
chr3 12220864 12220885 IRF1 JASPAR yes 462147
chr3 12220864 12220885 IRF1 JASPAR yes 70937968
chr3 12220868 12220883 FOXP1 JASPAR yes 462148
chr3 12220868 12220883 FOXP1 JASPAR yes 70937969
chr3 12220868 12220889 IRF1 JASPAR yes 462149
chr3 12220868 12220889 IRF1 JASPAR yes 70937970
chr3 12220869 12220884 FOXP1 JASPAR yes 462150
chr3 12220869 12220884 FOXP1 JASPAR yes 70937971
chr3 12220869 12220890 IRF1 JASPAR yes 462151
chr3 12220869 12220890 IRF1 JASPAR yes 70937972
chr3 12220870 12220885 FOXP1 JASPAR yes 462152
chr3 12220870 12220885 FOXP1 JASPAR yes 70937973
chr3 12220870 12220891 IRF1 JASPAR yes 462153
chr3 12220870 12220891 IRF1 JASPAR yes 70937974
chr3 12220871 12220886 FOXP1 JASPAR yes 462154
chr3 12220871 12220886 FOXP1 JASPAR yes 70937975
chr3 12220871 12220892 IRF1 JASPAR yes 462155
chr3 12220871 12220892 IRF1 JASPAR yes 70937976
chr3 12220872 12220887 FOXP1 JASPAR yes 462156
chr3 12220872 12220887 FOXP1 JASPAR yes 70937977
chr3 12220872 12220893 IRF1 JASPAR yes 462157
chr3 12220872 12220893 IRF1 JASPAR yes 70937978
chr3 12220873 12220888 FOXP1 JASPAR yes 462158
chr3 12220873 12220888 FOXP1 JASPAR yes 70937979
chr3 12220873 12220894 IRF1 JASPAR yes 462159
chr3 12220873 12220894 IRF1 JASPAR yes 70937980
chr3 12220874 12220889 FOXP1 JASPAR yes 462160
chr3 12220874 12220889 FOXP1 JASPAR yes 70937981
chr3 12220874 12220895 IRF1 JASPAR yes 462161
chr3 12220874 12220895 IRF1 JASPAR yes 70937982
chr3 12220875 12220890 FOXP1 JASPAR yes 462162
chr3 12220875 12220890 FOXP1 JASPAR yes 70937983
chr3 12220875 12220896 IRF1 JASPAR yes 462163
chr3 12220875 12220896 IRF1 JASPAR yes 70937984
chr3 12220876 12220891 FOXP1 JASPAR yes 462164
chr3 12220876 12220891 FOXP1 JASPAR yes 70937985
chr3 12220876 12220897 IRF1 JASPAR yes 462165
chr3 12220876 12220897 IRF1 JASPAR yes 70937986
chr3 12220877 12220892 FOXP1 JASPAR yes 462166
chr3 12220877 12220892 FOXP1 JASPAR yes 70937987
chr3 12220877 12220898 IRF1 JASPAR yes 462167
chr3 12220877 12220898 IRF1 JASPAR yes 70937988
chr3 12220878 12220893 FOXP1 JASPAR yes 462168
chr3 12220878 12220893 FOXP1 JASPAR yes 70937989
chr3 12220878 12220899 IRF1 JASPAR yes 462169
chr3 12220878 12220899 IRF1 JASPAR yes 70937990
chr3 12220879 12220894 FOXP1 JASPAR yes 462170
chr3 12220879 12220894 FOXP1 JASPAR yes 70937991
chr3 12220879 12220900 IRF1 JASPAR yes 462171
chr3 12220879 12220900 IRF1 JASPAR yes 70937992
chr3 12220880 12220895 FOXP1 JASPAR yes 462172
chr3 12220880 12220895 FOXP1 JASPAR yes 70937993
chr3 12220880 12220901 IRF1 JASPAR yes 462173
chr3 12220880 12220901 IRF1 JASPAR yes 70937994
chr3 12220881 12220896 FOXP1 JASPAR yes 462174
chr3 12220881 12220896 FOXP1 JASPAR yes 70937995
chr3 12220882 12220897 FOXP1 JASPAR yes 462175
chr3 12220882 12220897 FOXP1 JASPAR yes 70937996
chr3 12220882 12220903 IRF1 JASPAR yes 462176
chr3 12220882 12220903 IRF1 JASPAR yes 70937997
chr3 12220883 12220898 FOXP1 JASPAR yes 462177
chr3 12220883 12220898 FOXP1 JASPAR yes 70937998
chr3 12220930 12220947 RARA JASPAR yes 462178
chr3 12220930 12220947 RARA JASPAR yes 70937999
chr3 12220942 12220953 USF1 JASPAR yes 462179
chr3 12220942 12220953 USF1 JASPAR yes 70938000
chr3 12220943 12220953 TFEB JASPAR yes 462180
chr3 12220943 12220953 TFEC JASPAR yes 462181
chr3 12220943 12220953 TFEB JASPAR yes 70938001
chr3 12220943 12220953 TFEC JASPAR yes 70938002
chr3 12220943 12220954 USF2 JASPAR yes 462182
chr3 12220943 12220954 USF2 JASPAR yes 70938003
chr3 12220973 12220976 MYB TRANSFAC yes 462183
chr3 12220973 12220976 MYB TRANSFAC yes 70938004
chr3 12221014 12221021 ETS1 TRANSFAC yes 462184
chr3 12221014 12221021 ETS1 TRANSFAC yes 70938005
chr3 12221019 12221036 ESR1 JASPAR yes 462185
chr3 12221019 12221036 ESR1 JASPAR yes 70938006
chr3 12221058 12221073 MEF2A JASPAR yes 462186
chr3 12221058 12221073 MEF2A JASPAR yes 70938007
chr3 12221060 12221072 HNF1B JASPAR yes 462187
chr3 12221060 12221072 HNF1B JASPAR yes 70938008
chr3 12221064 12221068 YY1 TRANSFAC yes 462188
chr3 12221064 12221068 YY1 TRANSFAC yes 70938009
chr3 12221068 12221079 BATF JASPAR yes 462189
chr3 12221068 12221079 BATF JASPAR yes 70938010
chr3 12221071 12221085 POU1F1 JASPAR yes 462190
chr3 12221071 12221085 POU1F1 JASPAR yes 70938011
chr3 12221096 12221115 RFX2 JASPAR yes 462191
chr3 12221096 12221115 RFX2 JASPAR yes 70938012
chr3 12221100 12221116 RFX2 JASPAR yes 462192
chr3 12221100 12221116 RFX3 JASPAR yes 462193
chr3 12221100 12221116 RFX4 JASPAR yes 462194
chr3 12221100 12221116 RFX5 JASPAR yes 462195
chr3 12221100 12221116 RFX2 JASPAR yes 70938013
chr3 12221100 12221116 RFX3 JASPAR yes 70938014
chr3 12221100 12221116 RFX4 JASPAR yes 70938015
chr3 12221100 12221116 RFX5 JASPAR yes 70938016
chr3 12221101 12221120 RFX2 JASPAR yes 462196
chr3 12221101 12221120 RFX2 JASPAR yes 70938017
chr3 12221109 12221124 JUND JASPAR yes 462197
chr3 12221109 12221124 JUND JASPAR yes 70938018
chr3 12221110 12221123 JUN JASPAR yes 462198
chr3 12221110 12221123 JUN JASPAR yes 70938019
chr3 12221111 12221118 JUN TRANSFAC yes 462199
chr3 12221111 12221118 JUN TRANSFAC yes 70938020
chr3 12221117 12221121 YY1 TRANSFAC yes 462200
chr3 12221117 12221121 YY1 TRANSFAC yes 70938021
chr3 12221126 12221130 YY1 TRANSFAC yes 462201
chr3 12221126 12221130 YY1 TRANSFAC yes 70938022
chr3 12221134 12221148 JUN JASPAR yes 462202
chr3 12221134 12221148 JUN JASPAR yes 70938023
chr3 12221137 12221148 FOSL2 JASPAR yes 462203
chr3 12221137 12221148 JUNB JASPAR yes 462204
chr3 12221137 12221148 FOSL2 JASPAR yes 70938024
chr3 12221137 12221148 JUNB JASPAR yes 70938025
chr3 12221138 12221149 FOS JASPAR yes 462205
chr3 12221138 12221149 FOSL1 JASPAR yes 462206
chr3 12221138 12221149 JUND JASPAR yes 462207
chr3 12221138 12221149 FOS JASPAR yes 70938026
chr3 12221138 12221149 FOSL1 JASPAR yes 70938027
chr3 12221138 12221149 JUND JASPAR yes 70938028
chr3 12221139 12221146 JUN TRANSFAC yes 462208
chr3 12221139 12221146 JUN TRANSFAC yes 70938029
chr3 12221147 12221152 GATA2 JASPAR yes 462209
chr3 12221147 12221152 GATA2 JASPAR yes 70938030
chr3 12221150 12221157 NKX3-1 JASPAR yes 462210
chr3 12221150 12221157 NKX3-1 JASPAR yes 70938031
chr3 12221154 12221157 MYB TRANSFAC yes 462211
chr3 12221154 12221157 MYB TRANSFAC yes 70938032
chr3 12221166 12221176 MAX JASPAR yes 462212
chr3 12221166 12221176 MAX JASPAR yes 70938033
chr3 12221166 12221177 USF1 JASPAR yes 462213
chr3 12221166 12221177 USF2 JASPAR yes 462214
chr3 12221166 12221177 USF1 JASPAR yes 70938034
chr3 12221166 12221177 USF2 JASPAR yes 70938035
chr3 12221168 12221180 PKNOX2 JASPAR yes 462215
chr3 12221168 12221180 PKNOX2 JASPAR yes 70938036
chr3 12221186 12221190 YY1 TRANSFAC yes 462216
chr3 12221186 12221190 YY1 TRANSFAC yes 70938037
chr3 12221200 12221203 MYB TRANSFAC yes 462217
chr3 12221200 12221203 MYB TRANSFAC yes 70938038
chr3 12221209 12221213 YY1 TRANSFAC yes 462218
chr3 12221209 12221213 YY1 TRANSFAC yes 70938039
SNP sites on vista39975[chr3:12220728-12221239]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 12220770 rs11328894 AG A no 6552887
chr3 12220832 rs188467040 A G no 6552888
chr3 12220874 rs552250629 GAAA G
FOXP1 IRF1 STAT1 STAT2
6552889
chr3 12220905 rs111900711 C T no 6552890
chr3 12221083 rs140381105 C T
POU1F1
6552891
chr3 12221108 rs732863 A G
RFX2 RFX3 RFX4 RFX5
6552892
chr3 12221128 rs78513075 A C,G
YY1
6552893
Genes possibly regulated by vista39975[chr3:12220728-12221239]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 12194551 12200851 - TIMP4 ENSG00000157150.4 12200851 0.96 0.95 3414 80123
Expression level of Genes
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miRNAs possibly regulated by vista39975[chr3:12220728-12221239]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results