EnhancerDB
  1. Home
  2. Enhancers
  3. vista39988[chr3:12504126-12504446]
View enhancers around input chromosomal region
Back to top

Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista39988[chr3:12504126-12504446]
Back to top
Tissue distribution of vista39988
Back to top
Transcription factor that possibly regulate vista39988[chr3:12504126-12504446]
Back to top
Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 12503946 12504169 FOXA1 UCSC Txn Factor no Conserved 108528243
chr3 12504138 12504144 GATA3 JASPAR yes 483832
chr3 12504138 12504144 GATA3 JASPAR yes 70938674
chr3 12504146 12504157 GCM1 JASPAR yes 483833
chr3 12504146 12504157 GCM1 JASPAR yes 70938675
chr3 12504163 12504174 EBF1 JASPAR yes 483834
chr3 12504163 12504174 EBF1 JASPAR yes 70938676
chr3 12504174 12504187 ELF1 JASPAR yes 483835
chr3 12504174 12504187 ELF1 JASPAR yes 70938677
chr3 12504177 12504183 PEA3 TRANSFAC yes 483836
chr3 12504177 12504183 PEA3 TRANSFAC yes 70938678
chr3 12504177 12504187 ETV6 JASPAR yes 483837
chr3 12504177 12504187 ETV6 JASPAR yes 70938679
chr3 12504177 12504188 ELK4 JASPAR yes 483838
chr3 12504177 12504188 FLI1 JASPAR yes 483839
chr3 12504177 12504188 ELK4 JASPAR yes 70938680
chr3 12504177 12504188 FLI1 JASPAR yes 70938681
chr3 12504178 12504186 EHF JASPAR yes 483840
chr3 12504178 12504186 EHF JASPAR yes 70938682
chr3 12504179 12504186 SPI1 JASPAR yes 483841
chr3 12504179 12504186 SPI1 JASPAR yes 70938683
chr3 12504188 12504207 CTCF JASPAR yes 483842
chr3 12504188 12504207 CTCF JASPAR yes 70938684
chr3 12504189 12504202 TFAP2A JASPAR yes 483843
chr3 12504189 12504202 TFAP2B JASPAR yes 483844
chr3 12504189 12504202 TFAP2C JASPAR yes 483845
chr3 12504189 12504202 TFAP2A JASPAR yes 70938685
chr3 12504189 12504202 TFAP2B JASPAR yes 70938686
chr3 12504189 12504202 TFAP2C JASPAR yes 70938687
chr3 12504194 12504209 NR2C2 JASPAR yes 483846
chr3 12504194 12504209 NR2C2 JASPAR yes 70938688
chr3 12504197 12504206 SP1 TRANSFAC yes 483847
chr3 12504197 12504206 SP1 TRANSFAC yes 70938689
chr3 12504197 12504207 SP1 JASPAR yes 483848
chr3 12504197 12504207 SP1 JASPAR yes 70938690
chr3 12504199 12504205 MAZ TRANSFAC yes 483849
chr3 12504199 12504205 MAZ TRANSFAC yes 70938691
chr3 12504200 12504210 MZF1 JASPAR yes 483850
chr3 12504200 12504210 MZF1 JASPAR yes 70938692
chr3 12504204 12504208 LFA1 TRANSFAC yes 483851
chr3 12504204 12504208 LFA1 TRANSFAC yes 70938693
chr3 12504227 12504248 REST JASPAR yes 483852
chr3 12504227 12504248 REST JASPAR yes 70938694
chr3 12504228 12504247 REST JASPAR yes 483853
chr3 12504228 12504247 REST JASPAR yes 70938695
chr3 12504249 12504253 YY1 TRANSFAC yes 483854
chr3 12504249 12504253 YY1 TRANSFAC yes 70938696
chr3 12504253 12504274 IRF1 JASPAR yes 483855
chr3 12504253 12504274 IRF1 JASPAR yes 70938697
chr3 12504257 12504271 SPIC JASPAR yes 483856
chr3 12504257 12504271 SPIC JASPAR yes 70938698
chr3 12504257 12504272 PRDM1 JASPAR yes 483857
chr3 12504257 12504272 PRDM1 JASPAR yes 70938699
chr3 12504267 12504281 ONECUT2 JASPAR yes 483858
chr3 12504267 12504281 ONECUT3 JASPAR yes 483859
chr3 12504267 12504281 ONECUT2 JASPAR yes 70938700
chr3 12504267 12504281 ONECUT3 JASPAR yes 70938701
chr3 12504287 12504297 NFKB1 JASPAR yes 483860
chr3 12504287 12504297 NFKB1 JASPAR yes 70938702
chr3 12504296 12504312 ZNF143 JASPAR yes 483861
chr3 12504296 12504312 ZNF143 JASPAR yes 70938703
chr3 12504298 12504313 RUNX2 JASPAR yes 483862
chr3 12504298 12504313 RUNX2 JASPAR yes 70938704
chr3 12504301 12504313 GLI2 JASPAR yes 483863
chr3 12504301 12504313 GLI2 JASPAR yes 70938705
chr3 12504302 12504312 RUNX3 JASPAR yes 483864
chr3 12504302 12504312 RUNX3 JASPAR yes 70938706
chr3 12504303 12504312 RUNX2 JASPAR yes 483865
chr3 12504303 12504312 RUNX2 JASPAR yes 70938707
chr3 12504315 12504326 NFE2L2 JASPAR yes 483866
chr3 12504315 12504326 NFE2L2 JASPAR yes 70938708
chr3 12504347 12504353 MYC TRANSFAC yes 483867
chr3 12504347 12504353 MYC TRANSFAC yes 70938709
chr3 12504363 12504374 CEBPA JASPAR yes 483868
chr3 12504363 12504374 CEBPA JASPAR yes 70938710
chr3 12504375 12504379 YY1 TRANSFAC yes 483869
chr3 12504375 12504379 YY1 TRANSFAC yes 70938711
chr3 12504403 12504409 YY1 JASPAR yes 483870
chr3 12504403 12504409 YY1 JASPAR yes 70938712
chr3 12504406 12504417 EBF1 JASPAR yes 483871
chr3 12504406 12504417 EBF1 JASPAR yes 70938713
chr3 12504436 12504443 NKX3-1 JASPAR yes 483872
chr3 12504436 12504443 NKX3-1 JASPAR yes 70938714
chr3 12504437 12504445 FOXC1 JASPAR yes 483873
chr3 12504437 12504445 FOXC1 JASPAR yes 70938715
SNP sites on vista39988[chr3:12504126-12504446]
Back to top
chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 12504224 rs145668340 C T no 6554877
chr3 12504275 rs11438123 A AT
ONECUT2 ONECUT3
6554878
chr3 12504283 rs77756133 T A no 6554879
chr3 12504290 rs1619599 G A
NFKB1
6554880
chr3 12504295 rs1699346 C A
NFKB1
6554881
chr3 12504301 rs117275422 G T
GLI2 RUNX2 ZNF143
6554882
chr3 12504400 rs553417069 T C no 6554883
chr3 12504404 rs142485591 G A
YY1
6554884
Genes possibly regulated by vista39988[chr3:12504126-12504446]
Back to top
Details of Genes
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 12525931 12581122 + TSEN2 ENSG00000154743.13 12525931 0.7 0.99 3416 78515
chr3 12556433 12602558 - C3orf83 ENSG00000225526.4 12602558 0.88 1.0 3417 1888
chr3 12598513 12625212 + MKRN2 ENSG00000075975.11 12598513 0.54 0.99 3418 5933
Expression level of Genes
Back to top
miRNAs possibly regulated by vista39988[chr3:12504126-12504446]
Back to top
Details of miRNAs
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
Back to top
No results