EnhancerDB
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  3. vista39994[chr3:12688995-12689498]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista39994[chr3:12688995-12689498]
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Tissue distribution of vista39994
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Transcription factor that possibly regulate vista39994[chr3:12688995-12689498]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 12689103 12689451 FOXA1 UCSC Txn Factor no Conserved 108528251
chr3 12689105 12689430 CEBPB UCSC Txn Factor no Conserved 108528252
chr3 12689109 12689499 EP300 UCSC Txn Factor no Conserved 108528253
chr3 12689110 12689440 FOXA2 UCSC Txn Factor no Conserved 108528254
chr3 12689150 12689458 RUNX3 UCSC Txn Factor no Conserved 108528255
chr3 12688986 12689000 PLAG1 JASPAR yes 492606
chr3 12688986 12689000 PLAG1 JASPAR yes 70938853
chr3 12688990 12688999 NKX2-8 JASPAR yes 492607
chr3 12688990 12688999 NKX2-8 JASPAR yes 70938854
chr3 12688990 12689000 NKX2-3 JASPAR yes 492608
chr3 12688990 12689000 NKX2-3 JASPAR yes 70938855
chr3 12688995 12689015 ESR1 JASPAR yes 492609
chr3 12688995 12689015 ESR1 JASPAR yes 70938856
chr3 12689002 12689013 USF1 JASPAR yes 492610
chr3 12689002 12689013 USF2 JASPAR yes 492611
chr3 12689002 12689013 USF1 JASPAR yes 70938857
chr3 12689002 12689013 USF2 JASPAR yes 70938858
chr3 12689003 12689013 SREBF2 JASPAR yes 492612
chr3 12689003 12689013 SREBF2 JASPAR yes 70938859
chr3 12689005 12689010 USF2 TRANSFAC yes 492613
chr3 12689005 12689010 USF2 TRANSFAC yes 70938860
chr3 12689021 12689025 H4TF2 TRANSFAC yes 492614
chr3 12689021 12689025 H4TF2 TRANSFAC yes 70938861
chr3 12689025 12689042 ESR1 JASPAR yes 492615
chr3 12689025 12689042 ESR1 JASPAR yes 70938862
chr3 12689025 12689043 ESR2 JASPAR yes 492616
chr3 12689025 12689043 ESR2 JASPAR yes 70938863
chr3 12689029 12689043 TLX1 JASPAR yes 492617
chr3 12689029 12689043 TLX1 JASPAR yes 70938864
chr3 12689054 12689064 TEAD1 JASPAR yes 492618
chr3 12689054 12689064 TEAD4 JASPAR yes 492619
chr3 12689054 12689064 TEAD1 JASPAR yes 70938865
chr3 12689054 12689064 TEAD4 JASPAR yes 70938866
chr3 12689054 12689066 TEAD1 JASPAR yes 492620
chr3 12689054 12689066 TEAD1 JASPAR yes 70938867
chr3 12689055 12689063 TEAD3 JASPAR yes 492621
chr3 12689055 12689063 TEAD3 JASPAR yes 70938868
chr3 12689065 12689084 PAX5 JASPAR yes 492622
chr3 12689065 12689084 PAX5 JASPAR yes 70938869
chr3 12689067 12689071 LFA1 TRANSFAC yes 492623
chr3 12689067 12689071 LFA1 TRANSFAC yes 70938870
chr3 12689085 12689089 NFE TRANSFAC yes 492624
chr3 12689085 12689089 NFE TRANSFAC yes 70938871
chr3 12689091 12689111 RREB1 JASPAR yes 492625
chr3 12689091 12689111 RREB1 JASPAR yes 70938872
chr3 12689092 12689104 FOXI1 JASPAR yes 492626
chr3 12689092 12689104 FOXI1 JASPAR yes 70938873
chr3 12689092 12689112 RREB1 JASPAR yes 492627
chr3 12689092 12689112 RREB1 JASPAR yes 70938874
chr3 12689095 12689115 RREB1 JASPAR yes 492628
chr3 12689095 12689115 RREB1 JASPAR yes 70938875
chr3 12689096 12689108 FOXI1 JASPAR yes 492629
chr3 12689096 12689108 FOXI1 JASPAR yes 70938876
chr3 12689096 12689116 RREB1 JASPAR yes 492630
chr3 12689096 12689116 RREB1 JASPAR yes 70938877
chr3 12689099 12689119 RREB1 JASPAR yes 492631
chr3 12689099 12689119 RREB1 JASPAR yes 70938878
chr3 12689100 12689112 FOXI1 JASPAR yes 492632
chr3 12689100 12689112 FOXI1 JASPAR yes 70938879
chr3 12689100 12689120 RREB1 JASPAR yes 492633
chr3 12689100 12689120 RREB1 JASPAR yes 70938880
chr3 12689101 12689116 FOXP1 JASPAR yes 492634
chr3 12689101 12689116 FOXP1 JASPAR yes 70938881
chr3 12689104 12689116 FOXI1 JASPAR yes 492635
chr3 12689104 12689116 FOXI1 JASPAR yes 70938882
chr3 12689104 12689124 RREB1 JASPAR yes 492636
chr3 12689104 12689124 RREB1 JASPAR yes 70938883
chr3 12689106 12689121 FOXP1 JASPAR yes 492637
chr3 12689106 12689121 FOXP1 JASPAR yes 70938884
chr3 12689108 12689128 RREB1 JASPAR yes 492638
chr3 12689108 12689128 RREB1 JASPAR yes 70938885
chr3 12689112 12689124 FOXC2 JASPAR yes 492639
chr3 12689112 12689124 FOXC2 JASPAR yes 70938886
chr3 12689113 12689125 FOXI1 JASPAR yes 492640
chr3 12689113 12689125 FOXI1 JASPAR yes 70938887
chr3 12689114 12689128 ONECUT3 JASPAR yes 492641
chr3 12689114 12689128 ONECUT3 JASPAR yes 70938888
chr3 12689114 12689129 FOXP1 JASPAR yes 492642
chr3 12689114 12689129 FOXP1 JASPAR yes 70938889
chr3 12689116 12689128 FOXC2 JASPAR yes 492643
chr3 12689116 12689128 FOXC2 JASPAR yes 70938890
chr3 12689117 12689129 FOXI1 JASPAR yes 492644
chr3 12689117 12689129 FOXI1 JASPAR yes 70938891
chr3 12689120 12689131 PROP1 JASPAR yes 492645
chr3 12689120 12689131 PROP1 JASPAR yes 70938892
chr3 12689129 12689138 NKX2-8 JASPAR yes 492646
chr3 12689129 12689138 NKX2-8 JASPAR yes 70938893
chr3 12689129 12689139 NKX2-3 JASPAR yes 492647
chr3 12689129 12689139 NKX2-3 JASPAR yes 70938894
chr3 12689130 12689138 ISL2 JASPAR yes 492648
chr3 12689130 12689138 ISL2 JASPAR yes 70938895
chr3 12689130 12689139 NKX3-2 JASPAR yes 492649
chr3 12689130 12689139 NKX3-2 JASPAR yes 70938896
chr3 12689136 12689140 ESR1 TRANSFAC yes 492650
chr3 12689136 12689140 ESR1 TRANSFAC yes 70938897
chr3 12689145 12689155 NFATC3 JASPAR yes 492651
chr3 12689145 12689155 NFATC3 JASPAR yes 70938898
chr3 12689147 12689154 NFATC2 JASPAR yes 492652
chr3 12689147 12689154 NFATC2 JASPAR yes 70938899
chr3 12689158 12689161 MYB TRANSFAC yes 492653
chr3 12689158 12689161 MYB TRANSFAC yes 70938900
chr3 12689160 12689173 EOMES JASPAR yes 492654
chr3 12689160 12689173 EOMES JASPAR yes 70938901
chr3 12689162 12689172 TBR1 JASPAR yes 492655
chr3 12689162 12689172 TBR1 JASPAR yes 70938902
chr3 12689162 12689173 TBX20 JASPAR yes 492656
chr3 12689162 12689173 TBX2 JASPAR yes 492657
chr3 12689162 12689173 TBX20 JASPAR yes 70938903
chr3 12689162 12689173 TBX2 JASPAR yes 70938904
chr3 12689163 12689173 TBX21 JASPAR yes 492658
chr3 12689163 12689173 TBX21 JASPAR yes 70938905
chr3 12689176 12689194 MAFF JASPAR yes 492659
chr3 12689176 12689194 MAFF JASPAR yes 70938906
chr3 12689178 12689189 NRL JASPAR yes 492660
chr3 12689178 12689189 NRL JASPAR yes 70938907
chr3 12689178 12689193 MAFK JASPAR yes 492661
chr3 12689178 12689193 MAFK JASPAR yes 70938908
chr3 12689184 12689195 FOXA1 JASPAR yes 492662
chr3 12689184 12689195 FOXA1 JASPAR yes 70938909
chr3 12689184 12689199 FOXA1 JASPAR yes 492663
chr3 12689184 12689199 FOXA1 JASPAR yes 70938910
chr3 12689185 12689196 FOXC1 JASPAR yes 492664
chr3 12689185 12689196 FOXC1 JASPAR yes 70938911
chr3 12689185 12689201 SRF JASPAR yes 492665
chr3 12689185 12689201 SRF JASPAR yes 70938912
chr3 12689214 12689217 MYB TRANSFAC yes 492666
chr3 12689214 12689217 MYB TRANSFAC yes 70938913
chr3 12689218 12689236 RARA JASPAR yes 492667
chr3 12689218 12689236 RARA JASPAR yes 70938914
chr3 12689224 12689244 PPARG JASPAR yes 492668
chr3 12689224 12689244 PPARG JASPAR yes 70938915
chr3 12689228 12689232 LFA1 TRANSFAC yes 492669
chr3 12689228 12689232 LFA1 TRANSFAC yes 70938916
chr3 12689254 12689268 CREB3L1 JASPAR yes 492670
chr3 12689254 12689268 CREB3L1 JASPAR yes 70938917
chr3 12689260 12689271 FOXB1 JASPAR yes 492671
chr3 12689260 12689271 FOXB1 JASPAR yes 70938918
chr3 12689268 12689272 YY1 TRANSFAC yes 492672
chr3 12689268 12689272 YY1 TRANSFAC yes 70938919
chr3 12689274 12689295 ZNF263 JASPAR yes 492673
chr3 12689274 12689295 ZNF263 JASPAR yes 70938920
chr3 12689277 12689298 ZNF263 JASPAR yes 492674
chr3 12689277 12689298 ZNF263 JASPAR yes 70938921
chr3 12689302 12689317 RUNX2 JASPAR yes 492675
chr3 12689302 12689317 RUNX2 JASPAR yes 70938922
chr3 12689303 12689313 RUNX3 JASPAR yes 492676
chr3 12689303 12689313 RUNX3 JASPAR yes 70938923
chr3 12689303 12689314 RUNX1 JASPAR yes 492677
chr3 12689303 12689314 RUNX1 JASPAR yes 70938924
chr3 12689314 12689328 BATF3 JASPAR yes 492678
chr3 12689314 12689328 BATF3 JASPAR yes 70938925
chr3 12689316 12689329 DUXA JASPAR yes 492679
chr3 12689316 12689329 DUXA JASPAR yes 70938926
chr3 12689317 12689320 MYB TRANSFAC yes 492680
chr3 12689317 12689320 MYB TRANSFAC yes 70938927
chr3 12689317 12689328 DUX4 JASPAR yes 492681
chr3 12689317 12689328 DUX4 JASPAR yes 70938928
chr3 12689329 12689337 MEIS2 JASPAR yes 492682
chr3 12689329 12689337 MEIS3 JASPAR yes 492683
chr3 12689329 12689337 MEIS2 JASPAR yes 70938929
chr3 12689329 12689337 MEIS3 JASPAR yes 70938930
chr3 12689331 12689348 ZNF410 JASPAR yes 492684
chr3 12689331 12689348 ZNF410 JASPAR yes 70938931
chr3 12689337 12689351 FOXF2 JASPAR yes 492685
chr3 12689337 12689351 FOXF2 JASPAR yes 70938932
chr3 12689337 12689352 FOXP1 JASPAR yes 492686
chr3 12689337 12689352 FOXP1 JASPAR yes 70938933
chr3 12689338 12689349 FOXA1 JASPAR yes 492687
chr3 12689338 12689349 FOXH1 JASPAR yes 492688
chr3 12689338 12689349 FOXA1 JASPAR yes 70938934
chr3 12689338 12689349 FOXH1 JASPAR yes 70938935
chr3 12689338 12689353 FOXA1 JASPAR yes 492689
chr3 12689338 12689353 FOXA1 JASPAR yes 70938936
chr3 12689339 12689351 FOXC2 JASPAR yes 492690
chr3 12689339 12689351 FOXC2 JASPAR yes 70938937
chr3 12689340 12689351 FOXP2 JASPAR yes 492691
chr3 12689340 12689351 FOXP2 JASPAR yes 70938938
chr3 12689340 12689352 FOXI1 JASPAR yes 492692
chr3 12689340 12689352 FOXI1 JASPAR yes 70938939
chr3 12689342 12689350 FOXG1 JASPAR yes 492693
chr3 12689342 12689350 FOXG1 JASPAR yes 70938940
chr3 12689344 12689350 HiNF-A TRANSFAC yes 492694
chr3 12689344 12689350 HiNF-A TRANSFAC yes 70938941
chr3 12689352 12689363 CEBPB JASPAR yes 492695
chr3 12689352 12689363 CEBPB JASPAR yes 70938942
chr3 12689423 12689427 YY1 TRANSFAC yes 492696
chr3 12689423 12689427 YY1 TRANSFAC yes 70938943
chr3 12689428 12689446 IRF2 JASPAR yes 492697
chr3 12689428 12689446 IRF2 JASPAR yes 70938944
chr3 12689436 12689439 MYB TRANSFAC yes 492698
chr3 12689436 12689439 MYB TRANSFAC yes 70938945
chr3 12689438 12689453 MEF2C JASPAR yes 492699
chr3 12689438 12689453 MEF2C JASPAR yes 70938946
chr3 12689439 12689454 MEF2A JASPAR yes 492700
chr3 12689439 12689454 MEF2A JASPAR yes 70938947
chr3 12689440 12689452 MEF2A JASPAR yes 492701
chr3 12689440 12689452 MEF2D JASPAR yes 492702
chr3 12689440 12689452 MEF2A JASPAR yes 70938948
chr3 12689440 12689452 MEF2D JASPAR yes 70938949
chr3 12689472 12689481 SRY JASPAR yes 492703
chr3 12689472 12689481 SRY JASPAR yes 70938950
chr3 12689479 12689491 POU2F1 JASPAR yes 492704
chr3 12689479 12689491 POU2F1 JASPAR yes 70938951
chr3 12689479 12689492 POU3F3 JASPAR yes 492705
chr3 12689479 12689492 POU3F3 JASPAR yes 70938952
chr3 12689480 12689492 POU3F1 JASPAR yes 492706
chr3 12689480 12689492 POU3F1 JASPAR yes 70938953
chr3 12689481 12689490 POU3F4 JASPAR yes 492707
chr3 12689481 12689490 POU5F1B JASPAR yes 492708
chr3 12689481 12689490 POU3F4 JASPAR yes 70938954
chr3 12689481 12689490 POU5F1B JASPAR yes 70938955
SNP sites on vista39994[chr3:12688995-12689498]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 12689091 rs34420595 TCAAA T
RREB1
6555846
chr3 12689091 rs556728478 TCAAA T
RREB1
6555847
chr3 12689091 rs754917139 TCAAA T
RREB1
6555848
chr3 12689178 rs139629541 G T
CEBPB EP300 FOXA1 FOXA2 MAFF MAFK NRL RUNX3
6555849
chr3 12689259 rs145256118 T C
CEBPB CREB3L1 EP300 FOXA1 FOXA2 RUNX3
6555850
chr3 12689278 rs536623951 T C
CEBPB EP300 FOXA1 FOXA2 RUNX3 ZNF263
6555851
chr3 12689331 rs118069048 T A,C
CEBPB EP300 FOXA1 FOXA2 MEIS2 MEIS3 RUNX3 ZNF410
6555852
chr3 12689451 rs55762590 C T
EP300 FOXA1 MEF2A MEF2C MEF2D RUNX3
6555853
Genes possibly regulated by vista39994[chr3:12688995-12689498]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 12556433 12602558 - C3orf83 ENSG00000225526.4 12602558 0.88 1.0 3417 13563
chr3 12598513 12625212 + MKRN2 ENSG00000075975.11 12598513 0.54 0.99 3418 9518
chr3 12625100 12705725 - RAF1 ENSG00000132155.7 12705725 0.61 1.0 3419 83773
Expression level of Genes
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miRNAs possibly regulated by vista39994[chr3:12688995-12689498]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results