EnhancerDB
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  3. vista40162[chr3:16551037-16551376]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista40162[chr3:16551037-16551376]
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Tissue distribution of vista40162
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Transcription factor that possibly regulate vista40162[chr3:16551037-16551376]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 16548942 16558839 POLR2A UCSC Txn Factor no Conserved 108528470
chr3 16548942 16558839 POLR2A UCSC Txn Factor no Conserved 108528471
chr3 16548942 16558839 POLR2A UCSC Txn Factor no Conserved 108528472
chr3 16548942 16558839 POLR2A UCSC Txn Factor no Conserved 108528473
chr3 16548942 16558839 POLR2A UCSC Txn Factor no Conserved 108528474
chr3 16548942 16558839 POLR2A UCSC Txn Factor no Conserved 108528475
chr3 16548942 16558839 POLR2A UCSC Txn Factor no Conserved 108528476
chr3 16551372 16551608 SPI1 UCSC Txn Factor no Conserved 108528480
chr3 16551026 16551040 SPIC JASPAR yes 736191
chr3 16551026 16551040 SPIC JASPAR yes 70947014
chr3 16551054 16551066 MEF2B JASPAR yes 736192
chr3 16551054 16551066 MEF2D JASPAR yes 736193
chr3 16551054 16551066 MEF2B JASPAR yes 70947015
chr3 16551054 16551066 MEF2D JASPAR yes 70947016
chr3 16551056 16551060 TEAD2 TRANSFAC yes 736194
chr3 16551056 16551060 TEAD2 TRANSFAC yes 70947017
chr3 16551056 16551066 MNX1 JASPAR yes 736195
chr3 16551056 16551066 MNX1 JASPAR yes 70947018
chr3 16551059 16551071 FOXI1 JASPAR yes 736196
chr3 16551059 16551071 FOXI1 JASPAR yes 70947019
chr3 16551060 16551072 FOXC2 JASPAR yes 736197
chr3 16551060 16551072 FOXC2 JASPAR yes 70947020
chr3 16551060 16551073 POU2F2 JASPAR yes 736198
chr3 16551060 16551073 POU2F2 JASPAR yes 70947021
chr3 16551062 16551066 YY1 TRANSFAC yes 736199
chr3 16551062 16551066 YY1 TRANSFAC yes 70947022
chr3 16551068 16551072 YY1 TRANSFAC yes 736200
chr3 16551068 16551072 YY1 TRANSFAC yes 70947023
chr3 16551069 16551079 HOXD13 JASPAR yes 736201
chr3 16551069 16551079 HOXD13 JASPAR yes 70947024
chr3 16551069 16551080 HOXA10 JASPAR yes 736202
chr3 16551069 16551080 HOXA10 JASPAR yes 70947025
chr3 16551074 16551083 SRY JASPAR yes 736203
chr3 16551074 16551083 SRY JASPAR yes 70947026
chr3 16551076 16551079 MYB TRANSFAC yes 736204
chr3 16551076 16551079 MYB TRANSFAC yes 70947027
chr3 16551080 16551094 POU1F1 JASPAR yes 736205
chr3 16551080 16551094 POU1F1 JASPAR yes 70947028
chr3 16551084 16551098 ONECUT3 JASPAR yes 736206
chr3 16551084 16551098 ONECUT3 JASPAR yes 70947029
chr3 16551091 16551102 CDX2 JASPAR yes 736207
chr3 16551091 16551102 CDX2 JASPAR yes 70947030
chr3 16551092 16551103 HOXA10 JASPAR yes 736208
chr3 16551092 16551103 HOXA10 JASPAR yes 70947031
chr3 16551093 16551102 CDX1 JASPAR yes 736209
chr3 16551093 16551102 CDX1 JASPAR yes 70947032
chr3 16551114 16551129 PRDM1 JASPAR yes 736210
chr3 16551114 16551129 PRDM1 JASPAR yes 70947033
chr3 16551119 16551125 TCF4 TRANSFAC yes 736211
chr3 16551119 16551125 TCF4 TRANSFAC yes 70947034
chr3 16551131 16551149 NR3C1 JASPAR yes 736212
chr3 16551131 16551149 NR3C1 JASPAR yes 70947035
chr3 16551169 16551177 FOXO3 JASPAR yes 736213
chr3 16551169 16551177 FOXO3 JASPAR yes 70947036
chr3 16551171 16551178 NFATC2 JASPAR yes 736214
chr3 16551171 16551178 NFATC2 JASPAR yes 70947037
chr3 16551181 16551199 ESR2 JASPAR yes 736215
chr3 16551181 16551199 ESR2 JASPAR yes 70947038
chr3 16551182 16551197 ESR2 JASPAR yes 736216
chr3 16551182 16551197 ESR2 JASPAR yes 70947039
chr3 16551214 16551219 SP1 TRANSFAC yes 736217
chr3 16551214 16551219 SP1 TRANSFAC yes 70947040
chr3 16551218 16551236 RARA JASPAR yes 736218
chr3 16551218 16551236 RARA JASPAR yes 70947041
chr3 16551227 16551238 TBX2 JASPAR yes 736219
chr3 16551227 16551238 TBX2 JASPAR yes 70947042
chr3 16551238 16551242 NFE TRANSFAC yes 736220
chr3 16551238 16551242 NFE TRANSFAC yes 70947043
chr3 16551238 16551245 MEIS1 JASPAR yes 736221
chr3 16551238 16551245 MEIS1 JASPAR yes 70947044
chr3 16551244 16551255 EBF1 JASPAR yes 736222
chr3 16551244 16551255 EBF1 JASPAR yes 70947045
chr3 16551256 16551268 GLI2 JASPAR yes 736223
chr3 16551256 16551268 GLI2 JASPAR yes 70947046
chr3 16551298 16551302 H1TF2 TRANSFAC yes 736224
chr3 16551298 16551302 NFE TRANSFAC yes 736225
chr3 16551298 16551302 SRF TRANSFAC yes 736226
chr3 16551298 16551302 H1TF2 TRANSFAC yes 70947047
chr3 16551298 16551302 NFE TRANSFAC yes 70947048
chr3 16551298 16551302 SRF TRANSFAC yes 70947049
chr3 16551298 16551313 FOXA1 JASPAR yes 736227
chr3 16551298 16551313 FOXA1 JASPAR yes 70947050
chr3 16551300 16551312 FOXC2 JASPAR yes 736228
chr3 16551300 16551312 FOXC2 JASPAR yes 70947051
chr3 16551300 16551314 FOXF2 JASPAR yes 736229
chr3 16551300 16551314 FOXF2 JASPAR yes 70947052
chr3 16551301 16551309 FOXD1 JASPAR yes 736230
chr3 16551301 16551309 FOXG1 JASPAR yes 736231
chr3 16551301 16551309 FOXO3 JASPAR yes 736232
chr3 16551301 16551309 FOXD1 JASPAR yes 70947053
chr3 16551301 16551309 FOXG1 JASPAR yes 70947054
chr3 16551301 16551309 FOXO3 JASPAR yes 70947055
chr3 16551301 16551312 FOXC1 JASPAR yes 736233
chr3 16551301 16551312 FOXC1 JASPAR yes 70947056
chr3 16551302 16551309 FOXD2 JASPAR yes 736234
chr3 16551302 16551309 FOXI1 JASPAR yes 736235
chr3 16551302 16551309 FOXL1 JASPAR yes 736236
chr3 16551302 16551309 FOXO4 JASPAR yes 736237
chr3 16551302 16551309 FOXO6 JASPAR yes 736238
chr3 16551302 16551309 FOXP3 JASPAR yes 736239
chr3 16551302 16551309 FOXD2 JASPAR yes 70947057
chr3 16551302 16551309 FOXI1 JASPAR yes 70947058
chr3 16551302 16551309 FOXL1 JASPAR yes 70947059
chr3 16551302 16551309 FOXO4 JASPAR yes 70947060
chr3 16551302 16551309 FOXO6 JASPAR yes 70947061
chr3 16551302 16551309 FOXP3 JASPAR yes 70947062
chr3 16551302 16551313 FOXA1 JASPAR yes 736240
chr3 16551302 16551313 FOXA1 JASPAR yes 70947063
chr3 16551351 16551358 CEBPA TRANSFAC yes 736241
chr3 16551351 16551358 CEBPA TRANSFAC yes 70947064
chr3 16551352 16551363 E2F6 JASPAR yes 736242
chr3 16551352 16551363 E2F6 JASPAR yes 70947065
chr3 16551364 16551370 MZF1 JASPAR yes 736243
chr3 16551364 16551370 MZF1 JASPAR yes 70947066
chr3 16551368 16551384 ZNF143 JASPAR yes 736244
chr3 16551368 16551384 ZNF143 JASPAR yes 70947067
chr3 16551369 16551375 HiNF-A TRANSFAC yes 736245
chr3 16551369 16551375 HiNF-A TRANSFAC yes 70947068
chr3 16551370 16551386 SOX8 JASPAR yes 736246
chr3 16551370 16551386 SOX8 JASPAR yes 70947069
SNP sites on vista40162[chr3:16551037-16551376]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 16551170 rs150941338 T C
FOXO3 POLR2A
6582511
chr3 16551210 rs566361750 A C
POLR2A
6582512
chr3 16551213 rs2881513 C G
POLR2A
6582513
chr3 16551287 rs1429163 G A
POLR2A
6582514
chr3 16551339 rs114112919 C T
POLR2A
6582515
Genes possibly regulated by vista40162[chr3:16551037-16551376]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 16355081 16555533 - RFTN1 ENSG00000131378.9 16555533 0.73 0.99 3452 95843
Expression level of Genes
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miRNAs possibly regulated by vista40162[chr3:16551037-16551376]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results