EnhancerDB
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Chromosome characteristics of POLR2A[chr3:16548942-16558839]
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Enhancers possibly regulated by POLR2A[chr3:16548942-16558839]
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Chrom Start End Enhancer ID Tissues that enhancer appears More
chr3 16543630 16553835 enh87227
Stomach Blood (T-cell) Blood (GM12878)
chr3 16549018 16549298 vista40160
VISTA
chr3 16550067 16550455 vista40161
VISTA
chr3 16551037 16551376 vista40162
VISTA
chr3 16551639 16552079 vista40163
VISTA
chr3 16552919 16553213 vista40164
VISTA
chr3 16556249 16556592 vista40165
VISTA
chr3 16557386 16557712 vista40166
VISTA
SNP sites on POLR2A[chr3:16548942-16558839]
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Chrom Position dbSNP ID Reference Allele Alternative Allele id More
chr3 16549042 rs141880140 C T 6582472
chr3 16549126 rs35258603 C CACACACAT,CACACAT,CAT 6582473
chr3 16549128 rs78623763 C T 6582474
chr3 16549160 rs146495544 C T 6582475
chr3 16549170 rs531283545 TAC T 6582476
chr3 16549231 rs115607078 C T 6582477
chr3 16549256 rs575260679 A G 6582478
chr3 16549258 rs551442917 ACT A 6582479
chr3 16549258 rs57998160 ACT A 6582480
chr3 16549285 rs79179204 C A 6582481
chr3 16549309 rs76366598 C T 6582482
chr3 16549313 rs373267747 C T 6582483
chr3 16549315 rs201161542 CACAT C 6582484
chr3 16549315 rs57105411 CACAT C 6582485
chr3 16549315 rs768194109 CACAT C 6582486
chr3 16549329 rs34533718 CAT C 6582487
chr3 16549329 rs60220246 CAT C 6582488
chr3 16549346 rs142953005 A T 6582489
chr3 16549347 rs577064161 T C 6582490
chr3 16549363 rs545941180 C T 6582491
chr3 16549401 rs186345075 C T 6582492
chr3 16549523 rs530082629 T C 6582493
chr3 16549611 rs138082989 C T 6582494
chr3 16549770 rs552875592 C T 6582495
chr3 16549894 rs1896822 C G 6582496
chr3 16550063 rs148657345 C T 6582497
chr3 16550164 rs144288205 CA C 6582498
chr3 16550195 rs10558755 ACACG A 6582499
chr3 16550195 rs59865038 ACACG A 6582500
chr3 16550195 rs776183697 ACACG A 6582501
chr3 16550201 rs113943168 ACG A 6582502
chr3 16550201 rs57822813 ACG A 6582503
chr3 16550205 rs11928652 A G 6582504
chr3 16550341 rs546934395 A G,T 6582505
chr3 16550441 rs143393274 G T 6582506
chr3 16550594 rs77831087 C G 6582507
chr3 16550714 rs548374640 C A 6582508
chr3 16550717 rs181498539 A C 6582509
chr3 16550969 rs541999486 C A 6582510
chr3 16551170 rs150941338 T C 6582511
chr3 16551210 rs566361750 A C 6582512
chr3 16551213 rs2881513 C G 6582513
chr3 16551287 rs1429163 G A 6582514
chr3 16551339 rs114112919 C T 6582515
chr3 16551400 rs140594446 G C 6582516
chr3 16551407 rs57319001 A C 6582517
chr3 16551540 rs28680533 G A 6582518
chr3 16551615 rs577268421 G C 6582519
chr3 16551795 rs11128793 C A 6582520
chr3 16551818 rs185362645 C T 6582521
chr3 16551842 rs188566983 G A 6582522
chr3 16551858 rs570406568 C T 6582523
chr3 16551887 rs533057326 C A 6582524
chr3 16551894 rs78349102 T C 6582525
chr3 16551911 rs192769045 C G 6582526
chr3 16551929 rs73146258 A G 6582527
chr3 16551983 rs74952110 G A 6582528
chr3 16552112 rs111626185 C T 6582529
chr3 16552179 rs114664165 G T 6582530
chr3 16552221 rs73146259 G C 6582531
chr3 16552456 rs535430252 C T 6582532
chr3 16552624 rs142498548 G A 6582533
chr3 16552629 rs564671807 G A,C 6582534
chr3 16552664 rs28429262 C T 6582535
chr3 16552688 rs201617894 CTG C 6582536
chr3 16552696 rs182379882 A G 6582537
chr3 16552729 rs79704898 G C 6582538
chr3 16552759 rs28491048 T G 6582539
chr3 16552787 rs11915576 A C 6582540
chr3 16552816 rs28554145 T G 6582541
chr3 16552826 rs28678787 A G 6582542
chr3 16552866 rs558570439 G GT 6582543
chr3 16553146 rs1346604 G C 6582544
chr3 16553257 rs557575300 T C 6582545
chr3 16553262 rs574315163 A C 6582546
chr3 16553326 rs2033285 A T 6582547
chr3 16553448 rs115680130 A C 6582548
chr3 16553680 rs2881514 A G 6582549
chr3 16553760 rs536944113 T TTTG 6582550
chr3 16553824 rs2346910 G A 6582551
chr3 16553832 rs542863371 C T 6582552
chr3 16553876 rs552987633 A G 6582553
chr3 16553883 rs2346911 G A 6582554
chr3 16553899 rs2346912 A G 6582555
chr3 16553932 rs530451049 T A 6582556
chr3 16553933 rs2346913 A T 6582557
chr3 16553934 rs2346914 A T 6582558
chr3 16553969 rs4685343 G A 6582559
chr3 16553995 rs183984402 G A 6582560
chr3 16554076 rs13323915 G A 6582561
chr3 16554090 rs376309099 G A 6582562
chr3 16554106 rs542853266 T C 6582563
chr3 16554137 rs368540469 GGGCACCAGC G 6582564
chr3 16554246 rs3821786 T C 6582565
chr3 16554254 rs3821785 G C 6582566
chr3 16554352 rs3821784 G A 6582567
chr3 16554372 rs150580094 G T 6582568
chr3 16554492 rs138648422 G A 6582569
chr3 16554813 rs553146185 C A 6582570
chr3 16554822 rs538886192 G A 6582571
chr3 16554833 rs558187335 A C 6582572
chr3 16554863 rs569068301 C A 6582573
chr3 16554933 rs540155692 C A,G 6582574
chr3 16554939 rs111262017 CG C 6582575
chr3 16555223 rs2303849 C T 6582576
chr3 16555249 rs2303848 C T 6582577
chr3 16555470 rs373832632 C T 6582578
chr3 16555572 rs1366700 T C 6582579
chr3 16555576 rs13325015 G A 6582580
chr3 16555675 rs1366701 C A 6582581
chr3 16555746 rs6781595 T A 6582582
chr3 16555868 rs112671394 A AGATGT 6582583
chr3 16555868 rs200862993 A AGATGT 6582584
chr3 16555877 rs116184645 G A 6582585
chr3 16555906 rs6768991 G C 6582586
chr3 16556033 rs191743361 G A 6582587
chr3 16556039 rs1429161 C G,T 6582588
chr3 16556066 rs531828939 G A 6582589
chr3 16556199 rs1429162 C A,G,T 6582590
chr3 16556533 rs73146271 A G 6582591
chr3 16556605 rs73146272 G A 6582592
chr3 16556628 rs73146274 C G 6582593
chr3 16556878 rs375060788 T C 6582594
chr3 16556935 rs145153487 CT C 6582595
chr3 16557163 rs148603944 A G 6582596
chr3 16557188 rs115205119 C A 6582597
chr3 16557241 rs188230203 C T 6582598
chr3 16557353 rs73026232 G A 6582599
chr3 16557369 rs34829414 G T 6582600
chr3 16557553 rs181643678 G A 6582601
chr3 16557593 rs545797229 G A 6582602
chr3 16557668 rs77606669 C T 6582603
chr3 16557687 rs118076630 A C 6582604
chr3 16557690 rs78020946 C T 6582605
chr3 16557827 rs139685141 A AC 6582606
chr3 16557827 rs566418255 A AC 6582607
chr3 16557828 rs73146277 C G,T 6582608
chr3 16557834 rs116435094 G A,C,T 6582609
chr3 16557865 rs181123807 A C 6582610
chr3 16557866 rs185199124 C G 6582611
chr3 16557884 rs115885835 G C 6582612
chr3 16558117 rs543350555 C A 6582613
chr3 16558160 rs59876076 G T 6582614
chr3 16558191 rs115269258 C A,T 6582615
chr3 16558244 rs75052058 C T 6582616
chr3 16558327 rs183959540 G C 6582617
chr3 16558378 rs114253442 C T 6582618
chr3 16558426 rs144815545 C G 6582619
chr3 16558493 rs187178105 C T 6582620
Genes possibly regulated by POLR2A[chr3:16548942-16558839]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance to TFBS id More
chr3 16355081 16555533 - RFTN1 ENSG00000131378.9 16555533 0.73 0.99 0 3452
Expression level of Genes
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miRNAs possibly regulated by POLR2A[chr3:16548942-16558839]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End strand miRNA Name miRBase ID TSS TSI of Normal tissues TSI of Cancer tissues Distance to TFBS id More
Expression level of miRNAs
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No results