EnhancerDB
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  3. vista40163[chr3:16551639-16552079]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista40163[chr3:16551639-16552079]
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Tissue distribution of vista40163
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Transcription factor that possibly regulate vista40163[chr3:16551639-16552079]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 16548942 16558839 POLR2A UCSC Txn Factor no Conserved 108528470
chr3 16548942 16558839 POLR2A UCSC Txn Factor no Conserved 108528471
chr3 16548942 16558839 POLR2A UCSC Txn Factor no Conserved 108528472
chr3 16548942 16558839 POLR2A UCSC Txn Factor no Conserved 108528473
chr3 16548942 16558839 POLR2A UCSC Txn Factor no Conserved 108528474
chr3 16548942 16558839 POLR2A UCSC Txn Factor no Conserved 108528475
chr3 16548942 16558839 POLR2A UCSC Txn Factor no Conserved 108528476
chr3 16551540 16551928 EBF1 UCSC Txn Factor no Conserved 108528481
chr3 16551542 16552222 NFIC UCSC Txn Factor no Conserved 108528482
chr3 16551551 16552077 FOXM1 UCSC Txn Factor no Conserved 108528483
chr3 16551566 16552021 RUNX3 UCSC Txn Factor no Conserved 108528484
chr3 16551594 16552028 RELA UCSC Txn Factor no Conserved 108528485
chr3 16551612 16552044 EP300 UCSC Txn Factor no Conserved 108528486
chr3 16551684 16551687 MYB TRANSFAC yes 736276
chr3 16551684 16551687 MYB TRANSFAC yes 70947070
chr3 16551686 16551692 SOX10 JASPAR yes 736277
chr3 16551686 16551692 SOX10 JASPAR yes 70947071
chr3 16551703 16551709 NFE2 TRANSFAC yes 736278
chr3 16551703 16551709 NFE2 TRANSFAC yes 70947072
chr3 16551708 16551728 RREB1 JASPAR yes 736279
chr3 16551708 16551728 RREB1 JASPAR yes 70947073
chr3 16551710 16551724 FOXF2 JASPAR yes 736280
chr3 16551710 16551724 FOXF2 JASPAR yes 70947074
chr3 16551710 16551725 FOXP1 JASPAR yes 736281
chr3 16551710 16551725 FOXP1 JASPAR yes 70947075
chr3 16551711 16551722 FOXA1 JASPAR yes 736282
chr3 16551711 16551722 FOXH1 JASPAR yes 736283
chr3 16551711 16551722 FOXA1 JASPAR yes 70947076
chr3 16551711 16551722 FOXH1 JASPAR yes 70947077
chr3 16551711 16551726 FOXA1 JASPAR yes 736284
chr3 16551711 16551726 FOXA1 JASPAR yes 70947078
chr3 16551712 16551724 FOXC2 JASPAR yes 736285
chr3 16551712 16551724 FOXC2 JASPAR yes 70947079
chr3 16551713 16551724 FOXP2 JASPAR yes 736286
chr3 16551713 16551724 FOXP2 JASPAR yes 70947080
chr3 16551713 16551725 FOXI1 JASPAR yes 736287
chr3 16551713 16551725 FOXI1 JASPAR yes 70947081
chr3 16551715 16551723 FOXG1 JASPAR yes 736288
chr3 16551715 16551723 FOXG1 JASPAR yes 70947082
chr3 16551717 16551723 HiNF-A TRANSFAC yes 736289
chr3 16551717 16551723 HiNF-A TRANSFAC yes 70947083
chr3 16551766 16551776 NFKB1 JASPAR yes 736290
chr3 16551766 16551776 NFKB1 JASPAR yes 70947084
chr3 16551797 16551801 H1TF2 TRANSFAC yes 736291
chr3 16551797 16551801 NFE TRANSFAC yes 736292
chr3 16551797 16551801 SRF TRANSFAC yes 736293
chr3 16551797 16551801 H1TF2 TRANSFAC yes 70947085
chr3 16551797 16551801 NFE TRANSFAC yes 70947086
chr3 16551797 16551801 SRF TRANSFAC yes 70947087
chr3 16551797 16551803 NFYC TRANSFAC yes 736294
chr3 16551797 16551803 NFYC TRANSFAC yes 70947088
chr3 16551807 16551817 NFKB1 JASPAR yes 736295
chr3 16551807 16551817 NFKB1 JASPAR yes 70947089
chr3 16551810 16551824 EBF1 JASPAR yes 736296
chr3 16551810 16551824 EBF1 JASPAR yes 70947090
chr3 16551855 16551867 INSM1 JASPAR yes 736297
chr3 16551855 16551867 INSM1 JASPAR yes 70947091
chr3 16551865 16551869 YY1 TRANSFAC yes 736298
chr3 16551865 16551869 YY1 TRANSFAC yes 70947092
chr3 16551869 16551884 MEF2A JASPAR yes 736299
chr3 16551869 16551884 MEF2A JASPAR yes 70947093
chr3 16551869 16551887 SRF JASPAR yes 736300
chr3 16551869 16551887 SRF JASPAR yes 70947094
chr3 16551870 16551885 MEF2C JASPAR yes 736301
chr3 16551870 16551885 MEF2C JASPAR yes 70947095
chr3 16551886 16551898 PBX1 JASPAR yes 736302
chr3 16551886 16551898 PBX1 JASPAR yes 70947096
chr3 16551890 16551902 PBX1 JASPAR yes 736303
chr3 16551890 16551902 PBX1 JASPAR yes 70947097
chr3 16551900 16551911 CEBPB JASPAR yes 736304
chr3 16551900 16551911 CEBPB JASPAR yes 70947098
chr3 16551901 16551912 CEBPA JASPAR yes 736305
chr3 16551901 16551912 CEBPA JASPAR yes 70947099
chr3 16551902 16551913 TBX20 JASPAR yes 736306
chr3 16551902 16551913 TBX20 JASPAR yes 70947100
chr3 16551929 16551939 RELA JASPAR yes 736307
chr3 16551929 16551939 RELA JASPAR yes 70947101
chr3 16551929 16551940 NFKB1 JASPAR yes 736308
chr3 16551929 16551940 NFKB1 JASPAR yes 70947102
chr3 16551950 16551965 MEF2C JASPAR yes 736309
chr3 16551950 16551965 MEF2C JASPAR yes 70947103
chr3 16551951 16551966 MEF2A JASPAR yes 736310
chr3 16551951 16551966 MEF2A JASPAR yes 70947104
chr3 16551952 16551964 MEF2A JASPAR yes 736311
chr3 16551952 16551964 MEF2B JASPAR yes 736312
chr3 16551952 16551964 MEF2D JASPAR yes 736313
chr3 16551952 16551964 MEF2A JASPAR yes 70947105
chr3 16551952 16551964 MEF2B JASPAR yes 70947106
chr3 16551952 16551964 MEF2D JASPAR yes 70947107
chr3 16551953 16551963 MEF2A JASPAR yes 736314
chr3 16551953 16551963 MEF2A JASPAR yes 70947108
chr3 16551956 16551972 POU4F2 JASPAR yes 736315
chr3 16551956 16551972 POU4F3 JASPAR yes 736316
chr3 16551956 16551972 POU4F2 JASPAR yes 70947109
chr3 16551956 16551972 POU4F3 JASPAR yes 70947110
chr3 16551958 16551972 POU4F1 JASPAR yes 736317
chr3 16551958 16551972 POU4F1 JASPAR yes 70947111
chr3 16552003 16552007 YY1 TRANSFAC yes 736318
chr3 16552003 16552007 YY1 TRANSFAC yes 70947112
chr3 16552005 16552016 STAT3 JASPAR yes 736319
chr3 16552005 16552016 STAT3 JASPAR yes 70947113
chr3 16552021 16552031 NFKB1 JASPAR yes 736320
chr3 16552021 16552031 NFKB1 JASPAR yes 70947114
chr3 16552024 16552031 SPI1 JASPAR yes 736321
chr3 16552024 16552031 SPI1 JASPAR yes 70947115
chr3 16552035 16552041 SP1 TRANSFAC yes 736322
chr3 16552035 16552041 SP1 TRANSFAC yes 70947116
chr3 16552043 16552053 HOXA13 JASPAR yes 736323
chr3 16552043 16552053 HOXB13 JASPAR yes 736324
chr3 16552043 16552053 HOXD13 JASPAR yes 736325
chr3 16552043 16552053 HOXA13 JASPAR yes 70947117
chr3 16552043 16552053 HOXB13 JASPAR yes 70947118
chr3 16552043 16552053 HOXD13 JASPAR yes 70947119
chr3 16552045 16552049 TEAD2 TRANSFAC yes 736326
chr3 16552045 16552049 TEAD2 TRANSFAC yes 70947120
chr3 16552045 16552050 TBP TRANSFAC yes 736327
chr3 16552045 16552050 TBP TRANSFAC yes 70947121
chr3 16552045 16552051 TFIID TRANSFAC yes 736328
chr3 16552045 16552051 TFIID TRANSFAC yes 70947122
chr3 16552045 16552056 FOXC1 JASPAR yes 736329
chr3 16552045 16552056 FOXC1 JASPAR yes 70947123
chr3 16552058 16552064 MZF1 JASPAR yes 736330
chr3 16552058 16552064 MZF1 JASPAR yes 70947124
SNP sites on vista40163[chr3:16551639-16552079]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 16551795 rs11128793 C A
EBF1 EP300 FOXM1 NFIC POLR2A RELA RUNX3
6582520
chr3 16551818 rs185362645 C T
EBF1 EP300 FOXM1 NFIC POLR2A RELA RUNX3
6582521
chr3 16551842 rs188566983 G A
EBF1 EP300 FOXM1 NFIC POLR2A RELA RUNX3
6582522
chr3 16551858 rs570406568 C T
EBF1 EP300 FOXM1 INSM1 NFIC POLR2A RELA RUNX3
6582523
chr3 16551887 rs533057326 C A
EBF1 EP300 FOXM1 NFIC PBX1 POLR2A RELA RUNX3 SRF
6582524
chr3 16551894 rs78349102 T C
EBF1 EP300 FOXM1 NFIC PBX1 POLR2A RELA RUNX3
6582525
chr3 16551911 rs192769045 C G
CEBPA CEBPB EBF1 EP300 FOXM1 NFIC POLR2A RELA RUNX3 TBX20
6582526
chr3 16551929 rs73146258 A G
EP300 FOXM1 NFIC NFKB1 POLR2A RELA RUNX3
6582527
chr3 16551983 rs74952110 G A
EP300 FOXM1 NFIC POLR2A RELA RUNX3
6582528
Genes possibly regulated by vista40163[chr3:16551639-16552079]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 16355081 16555533 - RFTN1 ENSG00000131378.9 16555533 0.73 0.99 3452 96546
Expression level of Genes
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miRNAs possibly regulated by vista40163[chr3:16551639-16552079]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results