EnhancerDB
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  3. vista40166[chr3:16557386-16557712]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista40166[chr3:16557386-16557712]
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Tissue distribution of vista40166
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Transcription factor that possibly regulate vista40166[chr3:16557386-16557712]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 16548942 16558839 POLR2A UCSC Txn Factor no Conserved 108528470
chr3 16548942 16558839 POLR2A UCSC Txn Factor no Conserved 108528471
chr3 16548942 16558839 POLR2A UCSC Txn Factor no Conserved 108528472
chr3 16548942 16558839 POLR2A UCSC Txn Factor no Conserved 108528473
chr3 16548942 16558839 POLR2A UCSC Txn Factor no Conserved 108528474
chr3 16548942 16558839 POLR2A UCSC Txn Factor no Conserved 108528475
chr3 16548942 16558839 POLR2A UCSC Txn Factor no Conserved 108528476
chr3 16557477 16557654 SPI1 UCSC Txn Factor no Conserved 108528487
chr3 16557386 16557394 NR4A2 JASPAR yes 70947235
chr3 16557398 16557408 SP1 JASPAR yes 70947236
chr3 16557399 16557407 SP1 TRANSFAC yes 70947237
chr3 16557399 16557419 RREB1 JASPAR yes 70947238
chr3 16557430 16557435 GATA2 JASPAR yes 70947239
chr3 16557436 16557455 RFX2 JASPAR yes 70947240
chr3 16557440 16557456 RFX2 JASPAR yes 70947241
chr3 16557440 16557456 RFX3 JASPAR yes 70947242
chr3 16557440 16557456 RFX4 JASPAR yes 70947243
chr3 16557440 16557456 RFX5 JASPAR yes 70947244
chr3 16557441 16557460 RFX2 JASPAR yes 70947245
chr3 16557443 16557458 RFX5 JASPAR yes 70947246
chr3 16557446 16557455 NFIX JASPAR yes 70947247
chr3 16557447 16557453 NFIC JASPAR yes 70947248
chr3 16557462 16557474 PKNOX1 JASPAR yes 70947249
chr3 16557462 16557474 PKNOX2 JASPAR yes 70947250
chr3 16557462 16557474 TGIF1 JASPAR yes 70947251
chr3 16557462 16557474 TGIF2 JASPAR yes 70947252
chr3 16557483 16557489 SP1 TRANSFAC yes 70947253
chr3 16557483 16557494 E2F1 JASPAR yes 70947254
chr3 16557484 16557489 SP1 TRANSFAC yes 70947255
chr3 16557502 16557506 NFE TRANSFAC yes 70947256
chr3 16557518 16557530 ZBTB7B JASPAR yes 70947257
chr3 16557524 16557528 ESR1 TRANSFAC yes 70947258
chr3 16557546 16557567 ZNF263 JASPAR yes 70947259
chr3 16557554 16557562 MGA JASPAR yes 70947260
chr3 16557554 16557562 TBX15 JASPAR yes 70947261
chr3 16557554 16557562 TBX1 JASPAR yes 70947262
chr3 16557554 16557562 TBX4 JASPAR yes 70947263
chr3 16557554 16557562 TBX5 JASPAR yes 70947264
chr3 16557556 16557567 FLI1 JASPAR yes 70947265
chr3 16557557 16557567 ETV6 JASPAR yes 70947266
chr3 16557557 16557570 ELF1 JASPAR yes 70947267
chr3 16557558 16557565 SPI1 JASPAR yes 70947268
chr3 16557558 16557566 EHF JASPAR yes 70947269
chr3 16557577 16557580 MYB TRANSFAC yes 70947270
chr3 16557583 16557590 NKX3-1 JASPAR yes 70947271
chr3 16557594 16557615 ZNF263 JASPAR yes 70947272
chr3 16557609 16557620 NFKB1 JASPAR yes 70947273
chr3 16557632 16557640 MEIS2 JASPAR yes 70947274
chr3 16557632 16557640 MEIS3 JASPAR yes 70947275
chr3 16557633 16557645 PKNOX1 JASPAR yes 70947276
chr3 16557633 16557645 PKNOX2 JASPAR yes 70947277
chr3 16557633 16557645 TGIF1 JASPAR yes 70947278
chr3 16557633 16557645 TGIF2 JASPAR yes 70947279
chr3 16557638 16557642 ESR1 TRANSFAC yes 70947280
chr3 16557645 16557651 YY1 JASPAR yes 70947281
chr3 16557647 16557659 INSM1 JASPAR yes 70947282
chr3 16557662 16557666 H4TF2 TRANSFAC yes 70947283
chr3 16557693 16557697 H4TF2 TRANSFAC yes 70947284
chr3 16557706 16557711 TFAP2A TRANSFAC yes 70947285
SNP sites on vista40166[chr3:16557386-16557712]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 16557553 rs181643678 G A
POLR2A SPI1 ZNF263
6582601
chr3 16557593 rs545797229 G A
POLR2A SPI1
6582602
chr3 16557668 rs77606669 C T
POLR2A
6582603
chr3 16557687 rs118076630 A C
POLR2A
6582604
chr3 16557690 rs78020946 C T
POLR2A
6582605
Genes possibly regulated by vista40166[chr3:16557386-16557712]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 16355081 16555533 - RFTN1 ENSG00000131378.9 16555533 0.73 0.99 3452 98147
Expression level of Genes
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miRNAs possibly regulated by vista40166[chr3:16557386-16557712]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results