EnhancerDB
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  3. vista4058[chr1:179555221-179555646]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista4058[chr1:179555221-179555646]
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Tissue distribution of vista4058
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Transcription factor that possibly regulate vista4058[chr1:179555221-179555646]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 179555362 179555807 CTCF UCSC Txn Factor no Conserved 107847626
chr1 179555446 179555731 E2F1 UCSC Txn Factor no Conserved 107847630
chr1 179555221 179555225 TEAD2 TRANSFAC yes 118406370
chr1 179555221 179555226 TBP TRANSFAC yes 118406371
chr1 179555233 179555254 IRF1 JASPAR yes 118406372
chr1 179555242 179555246 YY1 TRANSFAC yes 118406373
chr1 179555286 179555304 NR3C1 JASPAR yes 118406374
chr1 179555287 179555302 AR JASPAR yes 118406375
chr1 179555287 179555304 NR3C1 JASPAR yes 118406376
chr1 179555287 179555304 NR3C2 JASPAR yes 118406377
chr1 179555289 179555304 AR JASPAR yes 118406378
chr1 179555292 179555296 YY1 TRANSFAC yes 118406379
chr1 179555294 179555300 TCF4 TRANSFAC yes 118406380
chr1 179555308 179555323 FOXP1 JASPAR yes 118406381
chr1 179555309 179555324 FOXP1 JASPAR yes 118406382
chr1 179555310 179555316 TBP TRANSFAC yes 118406383
chr1 179555310 179555325 FOXP1 JASPAR yes 118406384
chr1 179555310 179555331 IRF1 JASPAR yes 118406385
chr1 179555311 179555326 FOXP1 JASPAR yes 118406386
chr1 179555311 179555332 IRF1 JASPAR yes 118406387
chr1 179555312 179555327 FOXP1 JASPAR yes 118406388
chr1 179555312 179555333 IRF1 JASPAR yes 118406389
chr1 179555313 179555328 FOXP1 JASPAR yes 118406390
chr1 179555313 179555334 IRF1 JASPAR yes 118406391
chr1 179555314 179555329 FOXP1 JASPAR yes 118406392
chr1 179555314 179555335 IRF1 JASPAR yes 118406393
chr1 179555315 179555330 FOXP1 JASPAR yes 118406394
chr1 179555315 179555336 IRF1 JASPAR yes 118406395
chr1 179555316 179555331 FOXP1 JASPAR yes 118406396
chr1 179555316 179555337 IRF1 JASPAR yes 118406397
chr1 179555317 179555332 FOXP1 JASPAR yes 118406398
chr1 179555318 179555333 FOXP1 JASPAR yes 118406399
chr1 179555318 179555339 IRF1 JASPAR yes 118406400
chr1 179555319 179555334 FOXP1 JASPAR yes 118406401
chr1 179555332 179555345 JUN JASPAR yes 118406402
chr1 179555333 179555347 ATF7 JASPAR yes 118406403
chr1 179555333 179555347 BATF3 JASPAR yes 118406404
chr1 179555334 179555338 YY1 TRANSFAC yes 118406405
chr1 179555334 179555346 DBP JASPAR yes 118406406
chr1 179555334 179555346 HLF JASPAR yes 118406407
chr1 179555334 179555346 JDP2 JASPAR yes 118406408
chr1 179555334 179555349 JUND JASPAR yes 118406409
chr1 179555335 179555353 MAFF JASPAR yes 118406410
chr1 179555336 179555351 MAFK JASPAR yes 118406411
chr1 179555338 179555351 JUN JASPAR yes 118406412
chr1 179555340 179555351 NRL JASPAR yes 118406413
chr1 179555375 179555384 TFAP2A JASPAR yes 118406414
chr1 179555408 179555423 NR2C2 JASPAR yes 118406415
chr1 179555415 179555426 TFAP2A JASPAR yes 118406416
chr1 179555415 179555427 TFAP2A JASPAR yes 118406417
chr1 179555416 179555425 TFAP2A JASPAR yes 118406418
chr1 179555487 179555506 PAX5 JASPAR yes 118406419
chr1 179555501 179555506 SP1 TRANSFAC yes 118406420
chr1 179555501 179555515 PLAG1 JASPAR yes 118406421
chr1 179555502 179555517 TFAP2C JASPAR yes 118406422
chr1 179555503 179555514 TFAP2A JASPAR yes 118406423
chr1 179555504 179555513 TFAP2A JASPAR yes 118406424
chr1 179555530 179555541 FLI1 JASPAR yes 118406425
chr1 179555531 179555539 EHF JASPAR yes 118406426
chr1 179555569 179555574 SP1 TRANSFAC yes 118406427
chr1 179555574 179555586 TFAP2A JASPAR yes 118406428
chr1 179555574 179555586 TFAP2B JASPAR yes 118406429
chr1 179555604 179555614 FIGLA JASPAR yes 118406430
chr1 179555604 179555614 TCF4 JASPAR yes 118406431
chr1 179555606 179555615 ZEB1 JASPAR yes 118406432
chr1 179555608 179555613 SP1 TRANSFAC yes 118406433
SNP sites on vista4058[chr1:179555221-179555646]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 179555365 rs6677468 C T
CTCF
760451
chr1 179555385 rs6677476 C G
CTCF
760452
chr1 179555431 rs200622406 CGCTCGGAGCTCGGA C
CTCF
760453
chr1 179555431 rs564934724 C CGCTCGGA
CTCF
760454
chr1 179555431 rs879901572 C CGCTCGGA
CTCF
760455
chr1 179555486 rs78429855 G A
CTCF E2F1
760456
chr1 179555576 rs186171834 G T
CTCF E2F1 TFAP2A TFAP2B
760457
chr1 179555619 rs116481161 C T
CTCF E2F1
760458
Genes possibly regulated by vista4058[chr1:179555221-179555646]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 179443716 179457805 - AL160286.1 ENSG00000269064.1 179457805 0.0 0.0 1609 2584
chr1 179519674 179545087 - NPHS2 ENSG00000116218.8 179545087 1.0 0.0 1610 89866
chr1 179560748 179660407 + TDRD5 ENSG00000162782.11 179560748 0.94 0.99 1611 94898
Expression level of Genes
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miRNAs possibly regulated by vista4058[chr1:179555221-179555646]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results